Citrus Sinensis ID: 041936
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 402 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LE47 | 408 | Pentatricopeptide repeat- | yes | no | 0.997 | 0.982 | 0.584 | 1e-141 | |
| Q9SAB4 | 405 | Pentatricopeptide repeat- | no | no | 0.992 | 0.985 | 0.509 | 1e-119 | |
| Q8GW57 | 397 | Pentatricopeptide repeat- | no | no | 0.758 | 0.768 | 0.328 | 5e-51 | |
| Q9M065 | 412 | Pentatricopeptide repeat- | no | no | 0.907 | 0.885 | 0.311 | 7e-49 | |
| Q9LG23 | 398 | Pentatricopeptide repeat- | no | no | 0.907 | 0.917 | 0.287 | 5e-46 | |
| Q9LK58 | 551 | Pentatricopeptide repeat- | no | no | 0.746 | 0.544 | 0.327 | 1e-45 | |
| Q9LK57 | 394 | Pentatricopeptide repeat- | no | no | 0.922 | 0.941 | 0.286 | 2e-44 | |
| Q9ZU67 | 418 | Pentatricopeptide repeat- | no | no | 0.860 | 0.827 | 0.300 | 5e-43 | |
| Q8LDU5 | 466 | Pentatricopeptide repeat- | no | no | 0.910 | 0.785 | 0.278 | 2e-36 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.753 | 0.405 | 0.282 | 2e-30 |
| >sp|Q8LE47|PPR87_ARATH Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana GN=PPR336 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 502 bits (1293), Expect = e-141, Method: Compositional matrix adjust.
Identities = 238/407 (58%), Positives = 320/407 (78%), Gaps = 6/407 (1%)
Query: 2 GFISRLRTNLNLF----SQKHHRYLAT-SSILSSGDKTPLTSKDKTRAALTLLKSESNPE 56
+SR+R++ +LF + R L++ S+ILS KTPLTSK+K++AAL+LLKSE +P+
Sbjct: 2 ALLSRIRSSTSLFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKDPD 61
Query: 57 KILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEE-LKTRPDLQNERFHAH 115
+ILEICRAA+LTP+ +DR+AFS A+ L+E +F+ +S L+ ++ RPDL++ERF AH
Sbjct: 62 RILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSERFAAH 121
Query: 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTY 175
+I+LY QANM +H++R F+++++ ++ +V + NALL A +AKDYKE KRV+IE PK Y
Sbjct: 122 AIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPKMY 181
Query: 176 GIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDV 235
GI+PDL+TYNR+IK FCES +SS+YSI+AEM+RK IKPN+SSFG +++GFY E+K ++V
Sbjct: 182 GIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSDEV 241
Query: 236 NKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYG 295
KVL MM+ G+ GVS YN+RI SLCK +K EAKALLD MLS GMKPN+VTYSH I+G
Sbjct: 242 GKVLAMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLIHG 301
Query: 296 FCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN 355
FC + +FEEAKK ++IM N G P+S YFT++Y++CKGGD+ETAL CKES+ K WVP+
Sbjct: 302 FCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWVPS 361
Query: 356 FTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLPQ 402
F+ MKSLV GLA SKV EAKELIG VKEKFT+NV+ WNE+EA LPQ
Sbjct: 362 FSIMKSLVNGLAKDSKVEEAKELIGQVKEKFTRNVELWNEVEAALPQ 408
|
May be involved in translation through its association with polysomes. Could bind RNA. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SAB4|PPR33_ARATH Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidopsis thaliana GN=At1g11630 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/402 (50%), Positives = 295/402 (73%), Gaps = 3/402 (0%)
Query: 2 GFISRLRTNLNLFSQKHHRYLATSSILSSGDKTPLTSKDK-TRAALTLLKSESNPEKILE 60
F+ R+RT+ QK ++ SS S LTSK K +R L+LLKSE+NP++ILE
Sbjct: 2 AFLFRIRTS-EFILQKATQFRLKSSSSSIFTLKSLTSKQKKSRDTLSLLKSENNPDRILE 60
Query: 61 ICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEE-LKTRPDLQNERFHAHSIIL 119
ICR+ +L+P+ H+DR+ FS+A+ L+ +F +SQ L+ ++ +PD ++E F +IIL
Sbjct: 61 ICRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVRAIIL 120
Query: 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP 179
YG+ANM + +++TF+ ++++++ +V + NALL A +AKDYKE RV++E PK YGI+P
Sbjct: 121 YGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYGIEP 180
Query: 180 DLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVL 239
DL+TYNR+I+ CES +SS+YSI+AEM+RK IKP A+SFG ++ GFYKEEK+++V KV+
Sbjct: 181 DLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEVRKVM 240
Query: 240 QMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKD 299
+MM+ +G+ GV+ YN+ I LCK +K AEAKAL+D ++S M+PNSVTYS I+GFC +
Sbjct: 241 RMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSE 300
Query: 300 GNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTM 359
N +EA + +M +G P+S YFT+++ +CKGGD+ETAL C+ES+ K WVP+F+ M
Sbjct: 301 ENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRESMEKNWVPSFSVM 360
Query: 360 KSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLP 401
K LV GLA SKV EAKELI +VKEKFT+NVD WNE+EA LP
Sbjct: 361 KWLVNGLASRSKVDEAKELIAVVKEKFTRNVDLWNEVEAALP 402
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GW57|PP134_ARATH Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidopsis thaliana GN=At1g80150 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 202 bits (513), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 180/341 (52%)
Query: 45 ALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTR 104
AL LKSE +PEK+ + +A A +R AF +++L+ A + I LE KT
Sbjct: 41 ALVKLKSERDPEKLYNLFKANATNRLVIENRFAFEDTVSRLAGAGRLDFIEDLLEHQKTL 100
Query: 105 PDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEV 164
P + E F I+LYG+A MT+ A+ TF MD + + SV +FNA L L+ D +
Sbjct: 101 PQGRREGFIVRIIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTI 160
Query: 165 KRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVA 224
+ P YGI D ++N IK+FCE AY + EM++ + P+ ++ L++
Sbjct: 161 WEFLHDAPSKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTTLIS 220
Query: 225 GFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284
YK E+ N + +M G K ++ +NVRI L R+ +A LL M ++P
Sbjct: 221 ALYKHERCVIGNGLWNLMVLKGCKPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKLQVEP 280
Query: 285 NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFC 344
+S+TY+ I GF + A++ Y M G PN +Y TM++++CK G+++ A C
Sbjct: 281 DSITYNMVIKGFFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGNFDLAYTMC 340
Query: 345 KESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385
K+ + K W PN T++ L+ GL ++ +AK ++ LV +
Sbjct: 341 KDCMRKKWYPNLDTVEMLLKGLVKKGQLDQAKSIMELVHRR 381
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M065|PP352_ARATH Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (494), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 203/369 (55%), Gaps = 4/369 (1%)
Query: 35 PLTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLD-RLAFSIAINKLSEANYFNG 93
P + K A + L+ E +P+K L+I + S + R A + + +L++ F+
Sbjct: 26 PSSGKISVSKAKSTLRKEHDPDKALKIYANVSDHSASPVSSRYAQELTVRRLAKCRRFSD 85
Query: 94 ISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153
I +E K P ++ E F++ I YGQA+M HA+RTF++MD++ S +FNALL
Sbjct: 86 IETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLN 145
Query: 154 ALTIAKDYKEVKRVFIEFPKTYG-IKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSI 212
A +K++ +V ++F E P+ Y I PD +Y +IK++C+S A I+ +M K +
Sbjct: 146 ACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGM 205
Query: 213 KPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKA 272
+ +F +++ YK+ + E + + M + G + + YNVRI S K K
Sbjct: 206 EVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVRIMSAQK-ESPERVKE 264
Query: 273 LLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMC 332
L++EM S G+KP++++Y++ + +C+ G +EAKK Y + + +PN++ + T+++ +C
Sbjct: 265 LIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLC 324
Query: 333 KGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKN-VD 391
YE K+S+ +P+F T+K LV GL K +AK LI VK+KF + ++
Sbjct: 325 YSRLYEQGYAIFKKSVYMHKIPDFNTLKHLVVGLVENKKRDDAKGLIRTVKKKFPPSFLN 384
Query: 392 TWNEIEAGL 400
W ++E L
Sbjct: 385 AWKKLEEEL 393
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LG23|PPR82_ARATH Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (470), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/365 (28%), Positives = 189/365 (51%)
Query: 19 HRYLATSSILSSGDKTPLTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAF 78
R+ + ++++S ++ +L+ E NP++I+E + A + + +
Sbjct: 18 RRFSSAATVVSEPTAVTAAISPPQKSLTSLVNGERNPKRIVEKFKKACESERFRTNIAVY 77
Query: 79 SIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDE 138
+ +L A + + + LEE K D+ E F A I LYG+A M E+A + F+EM
Sbjct: 78 DRTVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPN 137
Query: 139 HKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSS 198
+ SV +FNALL A ++K + V+ +F E P IKPD+ +YN +IKA CE
Sbjct: 138 RDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLP 197
Query: 199 SAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRI 258
A ++L E++ K +KP+ +F L+ Y + ++E ++ M + + YN R+
Sbjct: 198 EAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARL 257
Query: 259 HSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS 318
L K E L E+ + G+KP+ +++ I G +G +EA+ +Y+ + G
Sbjct: 258 LGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGYR 317
Query: 319 PNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKEL 378
P+ + + ++ MCK GD+E+A+ KE+ +K ++ TT++ LV L SK EA+E+
Sbjct: 318 PDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVGQTTLQQLVDELVKGSKREEAEEI 377
Query: 379 IGLVK 383
+ + K
Sbjct: 378 VKIAK 382
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 159/302 (52%)
Query: 78 FSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMD 137
+S I +L EA F+ I + L+ K D+++E F ++LYG + M EHA + F EM
Sbjct: 90 YSAFIRRLREAKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMP 149
Query: 138 EHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197
E +V +FNALL A +K E + F E P+ GI PDL TYN +IKA C
Sbjct: 150 ELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSM 209
Query: 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVR 257
SI E+++ +P+ SF L+ FY+ E + + +++ +M+ + + YN R
Sbjct: 210 DDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSR 269
Query: 258 IHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL 317
+ L + +K +A L+D M ++G+ P+ TY+ I + D N EE K Y M GL
Sbjct: 270 VRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGL 329
Query: 318 SPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKE 377
+P++ Y ++ +CK GD + A+ +E+I + K +V L GA K+ EA +
Sbjct: 330 TPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQ 389
Query: 378 LI 379
L+
Sbjct: 390 LV 391
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LK57|PP226_ARATH Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 189/377 (50%), Gaps = 6/377 (1%)
Query: 7 LRTNLNLFSQKHHRYLATSSILSSGDKTPLTSKDKTRAALTLLKSESNPEKILEICRAAA 66
LR N + + + R+ S +++ TP K + +TL+ E +P+ I E + A
Sbjct: 9 LRGNFSFSTHTNRRFF---SAVTAAAATPSPPKP---SLITLVNDERDPKFITEKFKKAC 62
Query: 67 LTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMT 126
+ + + +L+ A F + + LEE P++ E F A I LYG+ M
Sbjct: 63 QAEWFRKNIAVYERTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMF 122
Query: 127 EHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNR 186
E+A + F EM E + + +FNALL A +K + V+ +F E P I+PD+ +YN
Sbjct: 123 ENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNT 182
Query: 187 VIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG 246
+IK C + A +++ E++ K +KP+ +F L+ Y + K+E+ ++ M
Sbjct: 183 LIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKN 242
Query: 247 MKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAK 306
+K + YN R+ L K E +L D++ +KP+ T++ I GF +G +EA
Sbjct: 243 VKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAI 302
Query: 307 KFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGL 366
+Y+ + +G P V+ +++ +CK GD E+A CKE AK + + ++ +V L
Sbjct: 303 TWYKEIEKNGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVLQEVVDAL 362
Query: 367 AGASKVSEAKELIGLVK 383
SK EA+E++ L K
Sbjct: 363 VKGSKQDEAEEIVELAK 379
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZU67|PP162_ARATH Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (444), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 191/356 (53%), Gaps = 10/356 (2%)
Query: 49 LKSESNPEKILEICRAAALTPESHLD-RLAFSIAINKLSEANYFNGISQYLEELKTRPDL 107
L+ +P+K L I ++ + S L R A + + +L+++ F+ I +E K P +
Sbjct: 40 LRKVQDPDKALAIYKSVSNNSTSPLSSRYAMELTVQRLAKSQRFSDIEALIESHKNNPKI 99
Query: 108 QNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRV 167
+ E F + I YG+A+M +HA++ F+EMD+ +V +FNALL A + ++ V ++
Sbjct: 100 KTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQL 159
Query: 168 FIEFPKTY-GIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGF 226
F EFP+ Y I PD +Y +IK++C+S A I+ +M+ K ++ +F ++
Sbjct: 160 FDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSL 219
Query: 227 YKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNS 286
YK ++ + M G ++YNVR+ + K K L++EM S G+KP++
Sbjct: 220 YKNGLVDEAESLWIEMVNKGCDLDNTVYNVRLMNAAK-ESPERVKELMEEMSSVGLKPDT 278
Query: 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL-SPNSSVYFTMVYFMCKGGDYETALGFCK 345
V+Y++ + +C G EAKK Y GL PN++ + T+++ +C G Y+ L K
Sbjct: 279 VSYNYLMTAYCVKGMMSEAKKVYE-----GLEQPNAATFRTLIFHLCINGLYDQGLTVFK 333
Query: 346 ESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDT-WNEIEAGL 400
+S +P+F T K L GL +++ +A+ + +VK+KF + T W ++E L
Sbjct: 334 KSAIVHKIPDFKTCKHLTEGLVKNNRMEDARGVARIVKKKFPPRLVTEWKKLEEKL 389
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 176/370 (47%), Gaps = 4/370 (1%)
Query: 28 LSSGDKTPLTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSE 87
+ S K+P+ S + + L+ S+S+P EI A+ P R + I I KL
Sbjct: 40 IVSNPKSPIGSPTRVQK---LIASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGR 96
Query: 88 ANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGA 147
YFN I L + ++ + I +Y +A + E + TF +M E
Sbjct: 97 GRYFNLIDDVLAKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKH 156
Query: 148 FNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207
N +L L + Y + + + +G+ P+ +YN +++AFC + D S AY + +M
Sbjct: 157 LNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKM 216
Query: 208 DRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKC 267
+ + P+ S+ L+ GF ++ + ++L M G Y ++SLC+ +
Sbjct: 217 LERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQL 276
Query: 268 AEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTM 327
EA LL M KG P+ V Y+ I GFC++ +A+K M ++G SPNS Y T+
Sbjct: 277 REAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTL 336
Query: 328 VYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLV-KEKF 386
+ +C G ++ + +E I+KG+ P+F+ LV G KV EA +++ +V K
Sbjct: 337 IGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGE 396
Query: 387 TKNVDTWNEI 396
T + DTW +
Sbjct: 397 TLHSDTWEMV 406
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 141/304 (46%), Gaps = 1/304 (0%)
Query: 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKE 135
+++++ IN L +S L E+ R +E + I Y + A+ E
Sbjct: 276 ISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAE 335
Query: 136 MDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS 195
M H L SV + +L+ ++ A + F++ + G+ P+ TY ++ F +
Sbjct: 336 MLRHGLTPSVITYTSLIHSMCKAGNMNRAME-FLDQMRVRGLCPNERTYTTLVDGFSQKG 394
Query: 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYN 255
+ AY +L EM+ P+ ++ AL+ G K ED VL+ M+ G+ V Y+
Sbjct: 395 YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454
Query: 256 VRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315
+ C+ EA + EM+ KG+KP+++TYS I GFC+ +EA Y M
Sbjct: 455 TVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV 514
Query: 316 GLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEA 375
GL P+ Y ++ C GD E AL E + KG +P+ T L+ GL S+ EA
Sbjct: 515 GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREA 574
Query: 376 KELI 379
K L+
Sbjct: 575 KRLL 578
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 402 | ||||||
| 449454724 | 405 | PREDICTED: pentatricopeptide repeat-cont | 0.952 | 0.945 | 0.641 | 1e-147 | |
| 359494840 | 396 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.997 | 0.615 | 1e-142 | |
| 147767812 | 396 | hypothetical protein VITISV_027645 [Viti | 0.982 | 0.997 | 0.615 | 1e-142 | |
| 18407365 | 408 | pentatricopeptide repeat-containing prot | 0.997 | 0.982 | 0.584 | 1e-139 | |
| 297837243 | 408 | pentatricopeptide repeat-containing prot | 0.997 | 0.982 | 0.582 | 1e-138 | |
| 255554937 | 397 | pentatricopeptide repeat-containing prot | 0.917 | 0.929 | 0.638 | 1e-137 | |
| 21553755 | 407 | putative membrane-associated salt-induci | 0.997 | 0.985 | 0.578 | 1e-134 | |
| 356555650 | 388 | PREDICTED: pentatricopeptide repeat-cont | 0.965 | 1.0 | 0.581 | 1e-134 | |
| 297849542 | 403 | pentatricopeptide repeat-containing prot | 0.995 | 0.992 | 0.521 | 1e-123 | |
| 224113615 | 401 | predicted protein [Populus trichocarpa] | 0.975 | 0.977 | 0.547 | 1e-119 |
| >gi|449454724|ref|XP_004145104.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucumis sativus] gi|449471723|ref|XP_004153390.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucumis sativus] gi|449530564|ref|XP_004172264.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/385 (64%), Positives = 312/385 (81%), Gaps = 2/385 (0%)
Query: 18 HHRYLATSSILSSGDKTPLTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLA 77
H+R L+T ILS PL++K K+RAAL+LLK+E NPE+I++ICRAA+LTPE HLDR+A
Sbjct: 23 HYRSLST--ILSPDSSNPLSAKQKSRAALSLLKTEENPERIIDICRAASLTPEFHLDRIA 80
Query: 78 FSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMD 137
FS+AI+KLS+ +F+GI ++LEELK+RPDL+NERF H+I+LYGQANM +HA+RTFK++D
Sbjct: 81 FSVAISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAIVLYGQANMLDHAIRTFKQID 140
Query: 138 EHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197
E +RHSV NALL A +AKDYKE+KRV++EFPK YGI+PD+DTYNRVIKAF ES S
Sbjct: 141 ELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGIEPDIDTYNRVIKAFSESGSS 200
Query: 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVR 257
SS SI+AEMDRK +KPNA++F +AG Y EEK+EDV KVL +ME+YG++ GV+ YN R
Sbjct: 201 SSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEKVLNLMEKYGVRRGVATYNAR 260
Query: 258 IHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL 317
I SLCKL++ EAKAL D MLS+GM PNSVTY I+GFCK+GN +EAK ++ M NSG
Sbjct: 261 IRSLCKLKRSTEAKALFDGMLSRGMDPNSVTYCELIHGFCKEGNLDEAKSIFKRMINSGC 320
Query: 318 SPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKE 377
P+S YFT+ YF+C+GGDYETA C ES+ KGWVPNF+TMKSLV GL SKV EAK+
Sbjct: 321 QPDSECYFTLTYFLCRGGDYETAFKICLESMKKGWVPNFSTMKSLVDGLVSISKVEEAKQ 380
Query: 378 LIGLVKEKFTKNVDTWNEIEAGLPQ 402
LIG +KE+F+KNV+ W+EIEAGLPQ
Sbjct: 381 LIGQIKERFSKNVEKWSEIEAGLPQ 405
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494840|ref|XP_003634851.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/401 (61%), Positives = 314/401 (78%), Gaps = 6/401 (1%)
Query: 2 GFISRLRTNLNLFSQKHHRYLATSSILSSGDKTPLTSKDKTRAALTLLKSESNPEKILEI 61
F+SRLR HR SSILS TPL+SK+K+RAAL+LLKSE +P++ILEI
Sbjct: 2 AFLSRLRP------ISSHRCRFFSSILSPDSATPLSSKEKSRAALSLLKSEQDPQRILEI 55
Query: 62 CRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYG 121
CRAAALTPESHLDR+AFS+AI+KL+++ +F+ I +L+ELK RPDL+ ERF +H+I+L+G
Sbjct: 56 CRAAALTPESHLDRVAFSVAISKLADSKHFDSIRHFLDELKARPDLRTERFVSHAIVLFG 115
Query: 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL 181
QA M AVRTF++M + + +V + NALL + +AK+YKE R+F+EFPKTYGI+ +L
Sbjct: 116 QAGMLNDAVRTFEQMHQLGVDRTVRSLNALLFSCILAKNYKEANRIFLEFPKTYGIELNL 175
Query: 182 DTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQM 241
D+YN V+KAF ES SSS YSILAEM RK +KPNA+SFG L+AGFY EEKYEDV KVL+M
Sbjct: 176 DSYNTVLKAFSESGSSSSGYSILAEMGRKGVKPNATSFGILLAGFYNEEKYEDVGKVLKM 235
Query: 242 MERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN 301
ME Y M+ G+S YN+RI SLCKL+K +EAKALLD +L++ MKPNS TY H I+GFCK+GN
Sbjct: 236 MEEYKMQPGISTYNIRIQSLCKLKKSSEAKALLDGILARRMKPNSETYCHLIHGFCKEGN 295
Query: 302 FEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKS 361
+EAKK ++ M N G P+S YFT+VYF+C+GGD+E+AL FCKE + KGW PN +TM S
Sbjct: 296 LDEAKKLFKDMVNRGCKPDSDCYFTLVYFLCQGGDFESALRFCKECMEKGWFPNISTMTS 355
Query: 362 LVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLPQ 402
LV GL SKV EA+ELIG +KEKF++NVD WNEIEAGLPQ
Sbjct: 356 LVNGLVSISKVEEARELIGQIKEKFSRNVDKWNEIEAGLPQ 396
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147767812|emb|CAN77919.1| hypothetical protein VITISV_027645 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/401 (61%), Positives = 314/401 (78%), Gaps = 6/401 (1%)
Query: 2 GFISRLRTNLNLFSQKHHRYLATSSILSSGDKTPLTSKDKTRAALTLLKSESNPEKILEI 61
F+SRLR HR SSILS TPL+SK+K+RAAL+LLKSE +P++ILEI
Sbjct: 2 AFLSRLRP------ISSHRCRFFSSILSPDSATPLSSKEKSRAALSLLKSEQDPQRILEI 55
Query: 62 CRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYG 121
CRAAALTPESHLDR+AFS+AI+KL+++ +F+ I +L+ELK RPDL+ ERF +H+I+L+G
Sbjct: 56 CRAAALTPESHLDRVAFSVAISKLADSKHFDSIRHFLDELKARPDLRTERFVSHAIVLFG 115
Query: 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL 181
QA M AVRTF++M + + +V + NALL + +AK+YKE R+F+EFPKTYGI+ +L
Sbjct: 116 QAGMLNDAVRTFEQMHQLGVDRTVRSLNALLFSCILAKNYKEANRIFLEFPKTYGIELNL 175
Query: 182 DTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQM 241
D+YN V+KAF ES SSS YSILAEM RK +KPNA+SFG L+AGFY EEKYEDV KVL+M
Sbjct: 176 DSYNTVLKAFSESGSSSSGYSILAEMGRKGVKPNATSFGILLAGFYNEEKYEDVGKVLKM 235
Query: 242 MERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN 301
ME Y M+ G+S YN+RI SLCKL+K +EAKALLD +L++ MKPNS TY H I+GFCK+GN
Sbjct: 236 MEEYKMQPGISTYNIRIQSLCKLKKSSEAKALLDGILARRMKPNSETYCHLIHGFCKEGN 295
Query: 302 FEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKS 361
+EAKK ++ M N G P+S YFT+VYF+C+GGD+E+AL FCKE + KGW PN +TM S
Sbjct: 296 LDEAKKLFKDMVNRGCKPDSDCYFTLVYFLCQGGDFESALRFCKECMEKGWFPNISTMTS 355
Query: 362 LVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLPQ 402
LV GL SKV EA+ELIG +KEKF++NVD WNEIEAGLPQ
Sbjct: 356 LVNGLVSISKVEEAQELIGQIKEKFSRNVDKWNEIEAGLPQ 396
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18407365|ref|NP_564786.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806489|sp|Q8LE47.2|PPR87_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g61870, mitochondrial; AltName: Full=Protein PENTATRICOPEPTIDE REPEAT 336; Flags: Precursor gi|16226403|gb|AAL16159.1|AF428391_1 At1g61870/F8K4_8 [Arabidopsis thaliana] gi|3367521|gb|AAC28506.1| Similar to gb|U08285 membrane-associated salt-inducible protein from Nicotiana tabacum. ESTs gb|T44131 and gb|T04378 come from this gene [Arabidopsis thaliana] gi|17065564|gb|AAL32936.1| Unknown protein [Arabidopsis thaliana] gi|32815835|gb|AAP88326.1| At1g61870 [Arabidopsis thaliana] gi|332195777|gb|AEE33898.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 238/407 (58%), Positives = 320/407 (78%), Gaps = 6/407 (1%)
Query: 2 GFISRLRTNLNLF----SQKHHRYLAT-SSILSSGDKTPLTSKDKTRAALTLLKSESNPE 56
+SR+R++ +LF + R L++ S+ILS KTPLTSK+K++AAL+LLKSE +P+
Sbjct: 2 ALLSRIRSSTSLFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKDPD 61
Query: 57 KILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEE-LKTRPDLQNERFHAH 115
+ILEICRAA+LTP+ +DR+AFS A+ L+E +F+ +S L+ ++ RPDL++ERF AH
Sbjct: 62 RILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSERFAAH 121
Query: 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTY 175
+I+LY QANM +H++R F+++++ ++ +V + NALL A +AKDYKE KRV+IE PK Y
Sbjct: 122 AIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPKMY 181
Query: 176 GIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDV 235
GI+PDL+TYNR+IK FCES +SS+YSI+AEM+RK IKPN+SSFG +++GFY E+K ++V
Sbjct: 182 GIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSDEV 241
Query: 236 NKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYG 295
KVL MM+ G+ GVS YN+RI SLCK +K EAKALLD MLS GMKPN+VTYSH I+G
Sbjct: 242 GKVLAMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLIHG 301
Query: 296 FCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN 355
FC + +FEEAKK ++IM N G P+S YFT++Y++CKGGD+ETAL CKES+ K WVP+
Sbjct: 302 FCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWVPS 361
Query: 356 FTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLPQ 402
F+ MKSLV GLA SKV EAKELIG VKEKFT+NV+ WNE+EA LPQ
Sbjct: 362 FSIMKSLVNGLAKDSKVEEAKELIGQVKEKFTRNVELWNEVEAALPQ 408
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297837243|ref|XP_002886503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297332344|gb|EFH62762.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/407 (58%), Positives = 319/407 (78%), Gaps = 6/407 (1%)
Query: 2 GFISRLRTNLNLF----SQKHHRYLAT-SSILSSGDKTPLTSKDKTRAALTLLKSESNPE 56
+SR+R++ +LF + R L++ S+ILS KTPLTSK+K++AAL+LLKSE +P+
Sbjct: 2 ALLSRIRSSTSLFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKDPD 61
Query: 57 KILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEE-LKTRPDLQNERFHAH 115
+ILEICRAA+LTP+ H+DR+AFS A+ L+E +F+ +S L+ ++ R DL++ERF AH
Sbjct: 62 RILEICRAASLTPDCHIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRQDLKSERFAAH 121
Query: 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTY 175
+I+LY QANM +H++R F+++++ ++ +V + NALL A +AKDYKE KRV+IE PK Y
Sbjct: 122 AIVLYAQANMLDHSLRVFRDLEKFEIPRTVKSLNALLFACLVAKDYKEAKRVYIEMPKMY 181
Query: 176 GIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDV 235
GI+PDL+TYNR+IK FCES +SS+YSI+AEM+RK IKPN+SSFG +++GFY E+K ++V
Sbjct: 182 GIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYSEDKNDEV 241
Query: 236 NKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYG 295
KVL MM+ G+ GVS YN+RI SLCK +K EAKALLD MLS GMKPN+VTYSH I G
Sbjct: 242 GKVLVMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLIRG 301
Query: 296 FCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN 355
FC + +FEEAKK +++M N G P+S YFT++Y++CKGGD+ETAL CKES+ K WVP+
Sbjct: 302 FCNEDDFEEAKKLFKVMVNRGCKPDSECYFTLIYYLCKGGDFETALVLCKESMEKNWVPS 361
Query: 356 FTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLPQ 402
F+ MKSLV GLA SKV EAKELIG VKEKFT+NV+ WNE+EA LPQ
Sbjct: 362 FSIMKSLVNGLAKDSKVDEAKELIGQVKEKFTRNVELWNEVEAALPQ 408
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255554937|ref|XP_002518506.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223542351|gb|EEF43893.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/376 (63%), Positives = 305/376 (81%), Gaps = 7/376 (1%)
Query: 34 TPLTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNG 93
TPL+SK++TRAA++LLKSE NP+KI+EIC +A+LTPE+HLDR+AFS+AI KLS++N F+
Sbjct: 22 TPLSSKERTRAAISLLKSEENPQKIIEICNSASLTPEAHLDRIAFSVAITKLSKSNNFSF 81
Query: 94 ISQYLEELK-TRPDLQ-NERFHAHSIILYGQANMTEHAVRTFKEMDEHKL----RHSVGA 147
I Q+L++L+ +RPDL+ +ERF AH+I+L+GQA M +HAVRTFKE + SV
Sbjct: 82 IQQFLDDLRVSRPDLRTSERFAAHAIVLFGQAAMVDHAVRTFKEYHTDVIGLGNNGSVKV 141
Query: 148 FNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207
FNALL A +AKDY EVKRVF+EFPK Y I+P+LD+YN VIK+FC+S SSS +S+LAEM
Sbjct: 142 FNALLFACYLAKDYSEVKRVFLEFPKNYNIEPNLDSYNTVIKSFCDSESSSSGFSVLAEM 201
Query: 208 DRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMM-ERYGMKSGVSMYNVRIHSLCKLRK 266
DRK +KPNA++FG L+AGFYKEEKYEDV KVL+MM ++YG++ GVS YN+RI SLCKL+K
Sbjct: 202 DRKRLKPNATTFGHLLAGFYKEEKYEDVGKVLEMMKDKYGIRPGVSTYNIRIQSLCKLKK 261
Query: 267 CAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFT 326
AEAKALLD MLS+ MKPNSVTY+H I+GFC +G+ E K+ ++ M N G P+S+ YFT
Sbjct: 262 SAEAKALLDGMLSRQMKPNSVTYAHLIHGFCNEGDLEGGKRLFKDMVNRGYQPDSACYFT 321
Query: 327 MVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKF 386
+++++CKG D+ETAL CKESI K WVPN TMKSLV GLAG KV EAKELI +KEKF
Sbjct: 322 LLHYLCKGQDFETALRICKESIGKDWVPNIATMKSLVNGLAGIGKVDEAKELIAKIKEKF 381
Query: 387 TKNVDTWNEIEAGLPQ 402
TKNV TW EIEAGLP+
Sbjct: 382 TKNVSTWEEIEAGLPR 397
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21553755|gb|AAM62848.1| putative membrane-associated salt-inducible protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/406 (57%), Positives = 317/406 (78%), Gaps = 5/406 (1%)
Query: 2 GFISRLRTNLNLF----SQKHHRYLAT-SSILSSGDKTPLTSKDKTRAALTLLKSESNPE 56
+SR+R++ +LF + R L++ S+IL+ KTPLTSK+K++AAL+LLKSE +P+
Sbjct: 2 ALLSRIRSSTSLFRYLNASPQIRSLSSASTILAPDSKTPLTSKEKSKAALSLLKSEKDPD 61
Query: 57 KILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHS 116
+ILEICRAA+LTP+ H+DR+AFS A+ L+E N+F+ +S L+ L++ERF AH+
Sbjct: 62 RILEICRAASLTPDCHIDRIAFSAAVENLAEKNHFSAVSNLLDGFIENRHLKSERFAAHA 121
Query: 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYG 176
I+LY QANM +H++R F+++++ ++ +V + NALL A +AKDYKE KRV+IE PK YG
Sbjct: 122 IVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPKMYG 181
Query: 177 IKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVN 236
I+PDL+TYNR+IK FCES +SS+YSI+AEM+RK IKPN+SSFG +++GFY E+K ++V
Sbjct: 182 IEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSDEVG 241
Query: 237 KVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGF 296
KVL MM+ G+ GVS YN+RI SLCK +K EAKALLD MLS GMKPN+VTYSH I+GF
Sbjct: 242 KVLAMMKARGVNIGVSTYNIRIQSLCKKKKSKEAKALLDGMLSAGMKPNTVTYSHLIHGF 301
Query: 297 CKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNF 356
C + +FEEAKK +++M N G P+S YFT++Y++CKGGD+ETAL CKES+ K WVP+F
Sbjct: 302 CNEDDFEEAKKLFKVMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWVPSF 361
Query: 357 TTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLPQ 402
+ MKSLV GLA SKV EAKELIG VKEKFT+NV+ WNE+EA LPQ
Sbjct: 362 SIMKSLVNGLAKDSKVEEAKELIGQVKEKFTRNVELWNEVEAALPQ 407
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555650|ref|XP_003546143.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/392 (58%), Positives = 307/392 (78%), Gaps = 4/392 (1%)
Query: 11 LNLFSQKHHRYLATSSILSSGDKTPLTSKDKTRAALTLLKSESNPEKILEICRAAALTPE 70
+++FS+ H +T+SILS TPLTSK KTR+A+ LLKSE+NPE+IL+ICRAAALTP+
Sbjct: 1 MSIFSRLRH--YSTTSILSPNSSTPLTSKQKTRSAIHLLKSETNPERILDICRAAALTPD 58
Query: 71 SHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAV 130
SH+DR AFS+A++KL+ A++F GI +L++LKTRPDL+NE+F +H+I+LYGQANM +HA+
Sbjct: 59 SHIDRRAFSLAVSKLAAAHHFAGIRTFLDDLKTRPDLRNEKFLSHAIVLYGQANMLDHAI 118
Query: 131 RTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190
RTF E D R SV N+LL A +AK+YKE+ R+++EFPKTY I+P+LDTYN VIKA
Sbjct: 119 RTFTE-DLPSPR-SVKTLNSLLFAALLAKNYKELTRIYLEFPKTYSIQPNLDTYNTVIKA 176
Query: 191 FCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG 250
F ES +SS YS+LAEMD+ +I PN ++ ++GFY+E+K++DV KVL++ME+Y +
Sbjct: 177 FAESGSTSSVYSVLAEMDKNNIAPNVTTLNNSLSGFYREKKFDDVGKVLKLMEKYSVFPS 236
Query: 251 VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYR 310
+S YNVRI SLCKL++ +EAKALL+ M+ G KPNSV+Y+ I+GFCK+G+ EEAK+ +R
Sbjct: 237 ISTYNVRIQSLCKLKRSSEAKALLEGMVCNGRKPNSVSYACLIHGFCKEGDLEEAKRLFR 296
Query: 311 IMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGAS 370
M G P+ YFT+V+F+C GG++E AL KE + KGWVPNFTTMKSLV GLAGA
Sbjct: 297 DMKRRGYLPDGECYFTLVHFLCCGGEFEAALEVAKECMGKGWVPNFTTMKSLVNGLAGAL 356
Query: 371 KVSEAKELIGLVKEKFTKNVDTWNEIEAGLPQ 402
KV EAKE+I +KEKF ++ D W+EIEAGLPQ
Sbjct: 357 KVDEAKEVIKQIKEKFAESGDKWDEIEAGLPQ 388
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297849542|ref|XP_002892652.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338494|gb|EFH68911.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 210/403 (52%), Positives = 297/403 (73%), Gaps = 3/403 (0%)
Query: 2 GFISRLRTNLNLFSQKHHRYLATSSILSSGDKTPLTSKDK-TRAALTLLKSESNPEKILE 60
F+ R+RT+ +L Q ++ SS S LTSK K +RA L+LLKSE+NP +ILE
Sbjct: 2 AFLFRIRTSESLV-QNVTQFRLQSSSSSIFTLNSLTSKQKKSRATLSLLKSENNPNRILE 60
Query: 61 ICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEE-LKTRPDLQNERFHAHSIIL 119
ICR+A+LTP+ H+DR+ FS+A+ L++ +F +SQ L+ ++ +PD ++E F +IIL
Sbjct: 61 ICRSASLTPDYHVDRIIFSVAVVTLAKEKHFVAVSQLLDGFIQNQPDPKSESFAVRAIIL 120
Query: 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP 179
YG+ANM + +++TF++++++++ +V + NALL A +AKDYKE RV++E PK YGI+P
Sbjct: 121 YGRANMLDRSIQTFRDLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYGIEP 180
Query: 180 DLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVL 239
DL+TYNR+I+ CES +S +YSI+AEM+RK +KP ASSFG ++ GFYKEEK++DV KV+
Sbjct: 181 DLETYNRMIRVLCESGSTSLSYSIVAEMERKWVKPTASSFGLMIDGFYKEEKFDDVRKVM 240
Query: 240 QMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKD 299
+MM+ +G+ GV+ YN+ I LCK +K AEAKAL+D ++S M+PNSVTYS I+GFC +
Sbjct: 241 RMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSE 300
Query: 300 GNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTM 359
N +EA + +M SG P+S YFT++ +CKGGD+ETAL C+ES+ K WVP+F+ M
Sbjct: 301 ENLDEAMNLFEVMVYSGYKPDSECYFTLIRCLCKGGDFETALILCRESMEKNWVPSFSIM 360
Query: 360 KSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLPQ 402
K LV GLA SKV EAKELI VKEKFT+NVD WNE+EA LPQ
Sbjct: 361 KWLVNGLASVSKVDEAKELIAQVKEKFTRNVDLWNEVEAALPQ 403
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113615|ref|XP_002316521.1| predicted protein [Populus trichocarpa] gi|222859586|gb|EEE97133.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 224/409 (54%), Positives = 291/409 (71%), Gaps = 17/409 (4%)
Query: 2 GFISRLRTNLNLFSQKHHRYLATSSILSSGDKTPLTSKDKTRAALTLLKSESNPEKILEI 61
+RLR L +HH +TS PL+SK KT AAL+LLKSE+NPEKILEI
Sbjct: 2 ALFARLRLRLQFLHLRHHINFSTS---------PLSSKSKTCAALSLLKSETNPEKILEI 52
Query: 62 CRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKT-RPDLQNERFHAHSIILY 120
CR+A LTP +H+DR+ FS+AI+KL+++N F+ I +L +L+T RPDL+ RF AHSIILY
Sbjct: 53 CRSACLTPYAHIDRITFSVAIDKLAKSNNFSYIDDFLTDLRTSRPDLRTVRFAAHSIILY 112
Query: 121 GQANMTEHAVRTFKEMDEHKLRH------SVGAFNALLLALTIAKDYKEVKRVFIEFPKT 174
GQA M + A+R FKE E SV NALL + +AK Y EV RVF++F K
Sbjct: 113 GQAGMIDQAIRLFKEYHEKNQNDVVLTSGSVKLLNALLFSCILAKKYDEVNRVFVDFSKR 172
Query: 175 YGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYED 234
Y I+P+L+T+N VI++FCES SSS YS+L EMD K +KPN ++FG L AGFY+EEKYED
Sbjct: 173 YKIEPNLETFNTVIQSFCESGSSSSCYSVLNEMDMKGVKPNETTFGHLFAGFYREEKYED 232
Query: 235 VNKVLQMMER-YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFI 293
V V +M+E YG+ +G+ +YN+RIHSLCKL++ EA LL+ LSKG+ PN VTYSH I
Sbjct: 233 VGTVSKMIEEDYGISAGIGVYNIRIHSLCKLKRAREANVLLEGCLSKGITPNGVTYSHLI 292
Query: 294 YGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWV 353
GFC +G+ EEAK+ ++ M N G P S Y T+VYF+ KGGD+E+A CKES+ K V
Sbjct: 293 LGFCMEGDLEEAKRLFKSMENRGCQPAYSCYATLVYFLGKGGDFESAYRVCKESMGKKMV 352
Query: 354 PNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLPQ 402
PNF+TMK LV GLA + +V +AKELIG VKE+F+KN++ WNE+EAGLPQ
Sbjct: 353 PNFSTMKILVQGLASSGEVDKAKELIGEVKERFSKNIELWNEVEAGLPQ 401
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 402 | ||||||
| TAIR|locus:2036833 | 408 | PPR336 "pentatricopeptide repe | 0.992 | 0.977 | 0.575 | 6.8e-127 | |
| TAIR|locus:2027387 | 405 | AT1G11630 [Arabidopsis thalian | 0.990 | 0.982 | 0.498 | 8.1e-108 | |
| TAIR|locus:2115375 | 412 | AT4G36680 [Arabidopsis thalian | 0.932 | 0.910 | 0.305 | 8.5e-49 | |
| TAIR|locus:2016249 | 397 | AT1G80150 "AT1G80150" [Arabido | 0.893 | 0.904 | 0.320 | 8.8e-47 | |
| TAIR|locus:2012120 | 398 | AT1G55890 [Arabidopsis thalian | 0.905 | 0.914 | 0.285 | 5.6e-45 | |
| TAIR|locus:2090014 | 551 | AT3G13150 "AT3G13150" [Arabido | 0.865 | 0.631 | 0.302 | 5e-44 | |
| TAIR|locus:2090034 | 394 | AT3G13160 [Arabidopsis thalian | 0.922 | 0.941 | 0.283 | 7.3e-43 | |
| TAIR|locus:2046288 | 418 | AT2G18520 [Arabidopsis thalian | 0.870 | 0.837 | 0.294 | 1.2e-42 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.694 | 0.373 | 0.280 | 4.3e-29 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.674 | 0.430 | 0.289 | 9.1e-29 |
| TAIR|locus:2036833 PPR336 "pentatricopeptide repeat 336" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1246 (443.7 bits), Expect = 6.8e-127, P = 6.8e-127
Identities = 233/405 (57%), Positives = 313/405 (77%)
Query: 4 ISRLRTNLNLF----SQKHHRYLATSS-ILSSGDKTPLTSKDKTRAALTLLKSESNPEKI 58
+SR+R++ +LF + R L+++S ILS KTPLTSK+K++AAL+LLKSE +P++I
Sbjct: 4 LSRIRSSTSLFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKDPDRI 63
Query: 59 LEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEE-LKTRPDLQNERFHAHSI 117
LEICRAA+LTP+ +DR+AFS A+ L+E +F+ +S L+ ++ RPDL++ERF AH+I
Sbjct: 64 LEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSERFAAHAI 123
Query: 118 ILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGI 177
+LY QANM +H++R F+++++ ++ +V + NALL A +AKDYKE KRV+IE PK YGI
Sbjct: 124 VLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPKMYGI 183
Query: 178 KPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNK 237
+PDL+TYNR+IK FCE I+AEM+RK IKPN+SSFG +++GFY E+K ++V K
Sbjct: 184 EPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSDEVGK 243
Query: 238 VLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFC 297
VL MM+ G+ GVS YN+RI SLCK +K EAKALLD MLS GMKPN+VTYSH I+GFC
Sbjct: 244 VLAMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLIHGFC 303
Query: 298 KDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFT 357
+ +FEEAKK ++IM N G P+S YFT++Y++CKGGD+ETAL CKES+ K WVP+F+
Sbjct: 304 NEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWVPSFS 363
Query: 358 TMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLPQ 402
MKSLV GLA SKV EAKELIG VKEKFT+NV+ WNE+EA LPQ
Sbjct: 364 IMKSLVNGLAKDSKVEEAKELIGQVKEKFTRNVELWNEVEAALPQ 408
|
|
| TAIR|locus:2027387 AT1G11630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
Identities = 200/401 (49%), Positives = 288/401 (71%)
Query: 3 FISRLRTNLNLFSQKHHRYLATSSILSSGDKTPLTSKDK-TRAALTLLKSESNPEKILEI 61
F+ R+RT+ QK ++ SS S LTSK K +R L+LLKSE+NP++ILEI
Sbjct: 3 FLFRIRTS-EFILQKATQFRLKSSSSSIFTLKSLTSKQKKSRDTLSLLKSENNPDRILEI 61
Query: 62 CRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEE-LKTRPDLQNERFHAHSIILY 120
CR+ +L+P+ H+DR+ FS+A+ L+ +F +SQ L+ ++ +PD ++E F +IILY
Sbjct: 62 CRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVRAIILY 121
Query: 121 GQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD 180
G+ANM + +++TF+ ++++++ +V + NALL A +AKDYKE RV++E PK YGI+PD
Sbjct: 122 GRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYGIEPD 181
Query: 181 LDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQ 240
L+TYNR+I+ CE I+AEM+RK IKP A+SFG ++ GFYKEEK+++V KV++
Sbjct: 182 LETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEVRKVMR 241
Query: 241 MMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300
MM+ +G+ GV+ YN+ I LCK +K AEAKAL+D ++S M+PNSVTYS I+GFC +
Sbjct: 242 MMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEE 301
Query: 301 NFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMK 360
N +EA + +M +G P+S YFT+++ +CKGGD+ETAL C+ES+ K WVP+F+ MK
Sbjct: 302 NLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRESMEKNWVPSFSVMK 361
Query: 361 SLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLP 401
LV GLA SKV EAKELI +VKEKFT+NVD WNE+EA LP
Sbjct: 362 WLVNGLASRSKVDEAKELIAVVKEKFTRNVDLWNEVEAALP 402
|
|
| TAIR|locus:2115375 AT4G36680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 116/380 (30%), Positives = 206/380 (54%)
Query: 25 SSILSSGDKT-PLTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLD-RLAFSIAI 82
+S + G T P + K A + L+ E +P+K L+I + S + R A + +
Sbjct: 15 ASAAADGTTTAPSSGKISVSKAKSTLRKEHDPDKALKIYANVSDHSASPVSSRYAQELTV 74
Query: 83 NKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLR 142
+L++ F+ I +E K P ++ E F++ I YGQA+M HA+RTF++MD++
Sbjct: 75 RRLAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTP 134
Query: 143 HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYG-IKPDLDTYNRVIKAFCEXXXXXXXX 201
S +FNALL A +K++ +V ++F E P+ Y I PD +Y +IK++C+
Sbjct: 135 RSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAI 194
Query: 202 XILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSL 261
I+ +M K ++ +F +++ YK+ + E + + M + G + + YNVRI S
Sbjct: 195 EIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVRIMSA 254
Query: 262 CKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS 321
K K L++EM S G+KP++++Y++ + +C+ G +EAKK Y + + +PN+
Sbjct: 255 QK-ESPERVKELIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGLEGNNCAPNA 313
Query: 322 SVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGL 381
+ + T+++ +C YE K+S+ +P+F T+K LV GL K +AK LI
Sbjct: 314 ATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIPDFNTLKHLVVGLVENKKRDDAKGLIRT 373
Query: 382 VKEKFTKN-VDTWNEIEAGL 400
VK+KF + ++ W ++E L
Sbjct: 374 VKKKFPPSFLNAWKKLEEEL 393
|
|
| TAIR|locus:2016249 AT1G80150 "AT1G80150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 117/365 (32%), Positives = 187/365 (51%)
Query: 21 YLATSSILSSGDKTPLTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSI 80
Y++T S G K PL AL LKSE +PEK+ + +A A +R AF
Sbjct: 23 YVSTESNQIQGLK-PLEEP-----ALVKLKSERDPEKLYNLFKANATNRLVIENRFAFED 76
Query: 81 AINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHK 140
+++L+ A + I LE KT P + E F I+LYG+A MT+ A+ TF MD +
Sbjct: 77 TVSRLAGAGRLDFIEDLLEHQKTLPQGRREGFIVRIIMLYGKAGMTKQALDTFFNMDLYG 136
Query: 141 LRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXX 200
+ SV +FNA L L+ D + + P YGI D ++N IK+FCE
Sbjct: 137 CKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSFCELGILDGA 196
Query: 201 XXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHS 260
+ EM++ + P+ ++ L++ YK E+ N + +M G K ++ +NVRI
Sbjct: 197 YMAMREMEKSGLTPDVVTYTTLISALYKHERCVIGNGLWNLMVLKGCKPNLTTFNVRIQF 256
Query: 261 LCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN 320
L R+ +A LL M ++P+S+TY+ I GF + A++ Y M G PN
Sbjct: 257 LVNRRRAWDANDLLLLMPKLQVEPDSITYNMVIKGFFLARFPDMAERVYTAMHGKGYKPN 316
Query: 321 SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIG 380
+Y TM++++CK G+++ A CK+ + K W PN T++ L+ GL ++ +AK ++
Sbjct: 317 LKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPNLDTVEMLLKGLVKKGQLDQAKSIME 376
Query: 381 LVKEK 385
LV +
Sbjct: 377 LVHRR 381
|
|
| TAIR|locus:2012120 AT1G55890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 104/364 (28%), Positives = 187/364 (51%)
Query: 20 RYLATSSILSSGDKTPLTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFS 79
R+ + ++++S ++ +L+ E NP++I+E + A + + +
Sbjct: 19 RFSSAATVVSEPTAVTAAISPPQKSLTSLVNGERNPKRIVEKFKKACESERFRTNIAVYD 78
Query: 80 IAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH 139
+ +L A + + + LEE K D+ E F A I LYG+A M E+A + F+EM
Sbjct: 79 RTVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNR 138
Query: 140 KLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXX 199
+ SV +FNALL A ++K + V+ +F E P IKPD+ +YN +IKA CE
Sbjct: 139 DCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPE 198
Query: 200 XXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIH 259
+L E++ K +KP+ +F L+ Y + ++E ++ M + + YN R+
Sbjct: 199 AVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARLL 258
Query: 260 SLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP 319
L K E L E+ + G+KP+ +++ I G +G +EA+ +Y+ + G P
Sbjct: 259 GLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGYRP 318
Query: 320 NSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELI 379
+ + + ++ MCK GD+E+A+ KE+ +K ++ TT++ LV L SK EA+E++
Sbjct: 319 DKATFALLLPAMCKAGDFESAIELFKETFSKRYLVGQTTLQQLVDELVKGSKREEAEEIV 378
Query: 380 GLVK 383
+ K
Sbjct: 379 KIAK 382
|
|
| TAIR|locus:2090014 AT3G13150 "AT3G13150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 108/357 (30%), Positives = 178/357 (49%)
Query: 23 ATSSILSSGDKTPLTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAI 82
A+++ + G ++ +KD + LT EK C + + L +S I
Sbjct: 44 ASTASVGDGGQSSNDAKDSKNSKLT-----QKVEKFKRSCESESFRQVHGL----YSAFI 94
Query: 83 NKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLR 142
+L EA F+ I + L+ K D+++E F ++LYG + M EHA + F EM E
Sbjct: 95 RRLREAKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELNCE 154
Query: 143 HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXX 202
+V +FNALL A +K E + F E P+ GI PDL TYN +IKA C
Sbjct: 155 RTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILS 214
Query: 203 ILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLC 262
I E+++ +P+ SF L+ FY+ E + + +++ +M+ + + YN R+ L
Sbjct: 215 IFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLT 274
Query: 263 KLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSS 322
+ +K +A L+D M ++G+ P+ TY+ I + D N EE K Y M GL+P++
Sbjct: 275 RNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTV 334
Query: 323 VYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELI 379
Y ++ +CK GD + A+ +E+I + K +V L GA K+ EA +L+
Sbjct: 335 TYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQLV 391
|
|
| TAIR|locus:2090034 AT3G13160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 107/377 (28%), Positives = 186/377 (49%)
Query: 7 LRTNLNLFSQKHHRYLATSSILSSGDKTPLTSKDKTRAALTLLKSESNPEKILEICRAAA 66
LR N + + + R+ S +++ TP K + +TL+ E +P+ I E + A
Sbjct: 9 LRGNFSFSTHTNRRFF---SAVTAAAATPSPPKP---SLITLVNDERDPKFITEKFKKAC 62
Query: 67 LTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMT 126
+ + + +L+ A F + + LEE P++ E F A I LYG+ M
Sbjct: 63 QAEWFRKNIAVYERTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMF 122
Query: 127 EHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNR 186
E+A + F EM E + + +FNALL A +K + V+ +F E P I+PD+ +YN
Sbjct: 123 ENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNT 182
Query: 187 VIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG 246
+IK C ++ E++ K +KP+ +F L+ Y + K+E+ ++ M
Sbjct: 183 LIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKN 242
Query: 247 MKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAK 306
+K + YN R+ L K E +L D++ +KP+ T++ I GF +G +EA
Sbjct: 243 VKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAI 302
Query: 307 KFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGL 366
+Y+ + +G P V+ +++ +CK GD E+A CKE AK + + ++ +V L
Sbjct: 303 TWYKEIEKNGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVLQEVVDAL 362
Query: 367 AGASKVSEAKELIGLVK 383
SK EA+E++ L K
Sbjct: 363 VKGSKQDEAEEIVELAK 379
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| TAIR|locus:2046288 AT2G18520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 106/360 (29%), Positives = 191/360 (53%)
Query: 45 ALTLLKSESNPEKILEICRAAALTPESHLD-RLAFSIAINKLSEANYFNGISQYLEELKT 103
A + L+ +P+K L I ++ + S L R A + + +L+++ F+ I +E K
Sbjct: 36 AKSKLRKVQDPDKALAIYKSVSNNSTSPLSSRYAMELTVQRLAKSQRFSDIEALIESHKN 95
Query: 104 RPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKE 163
P ++ E F + I YG+A+M +HA++ F+EMD+ +V +FNALL A + ++
Sbjct: 96 NPKIKTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFER 155
Query: 164 VKRVFIEFPKTYG-IKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGAL 222
V ++F EFP+ Y I PD +Y +IK++C+ I+ +M+ K ++ +F +
Sbjct: 156 VPQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTI 215
Query: 223 VAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGM 282
+ YK ++ + M G ++YNVR+ + K K L++EM S G+
Sbjct: 216 LGSLYKNGLVDEAESLWIEMVNKGCDLDNTVYNVRLMNAAK-ESPERVKELMEEMSSVGL 274
Query: 283 KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS-PNSSVYFTMVYFMCKGGDYETAL 341
KP++V+Y++ + +C G EAKK Y GL PN++ + T+++ +C G Y+ L
Sbjct: 275 KPDTVSYNYLMTAYCVKGMMSEAKKVYE-----GLEQPNAATFRTLIFHLCINGLYDQGL 329
Query: 342 GFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDT-WNEIEAGL 400
K+S +P+F T K L GL +++ +A+ + +VK+KF + T W ++E L
Sbjct: 330 TVFKKSAIVHKIPDFKTCKHLTEGLVKNNRMEDARGVARIVKKKFPPRLVTEWKKLEEKL 389
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| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 332 (121.9 bits), Expect = 4.3e-29, P = 4.3e-29
Identities = 79/282 (28%), Positives = 143/282 (50%)
Query: 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK-DYKEVKRVFIEFPKTYGIK 178
Y + ++ + A+ H V ++NA+L A +K + + VF E ++ +
Sbjct: 144 YSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQ-VS 202
Query: 179 PDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKV 238
P++ TYN +I+ FC + +M+ K PN ++ L+ G+ K K +D K+
Sbjct: 203 PNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKL 262
Query: 239 LQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK 298
L+ M G++ + YNV I+ LC+ + E +L EM +G + VTY+ I G+CK
Sbjct: 263 LRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCK 322
Query: 299 DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTT 358
+GNF +A + M GL+P+ Y ++++ MCK G+ A+ F + +G PN T
Sbjct: 323 EGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERT 382
Query: 359 MKSLVTGLAGASKVSEAKELIGLVKEK-FTKNVDTWNEIEAG 399
+LV G + ++EA ++ + + F+ +V T+N + G
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALING 424
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| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 79/273 (28%), Positives = 134/273 (49%)
Query: 129 AVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI 188
A+ K+M++ K+ V + ++ AL K+ + +F E GI+P++ TYN +I
Sbjct: 239 ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNK-GIRPNVVTYNSLI 297
Query: 189 KAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMK 248
+ C +L++M + I PN +F AL+ F KE K + K+ M + +
Sbjct: 298 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 357
Query: 249 SGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKF 308
+ Y+ I+ C + EAK + + M+SK PN VTY+ I GFCK EE +
Sbjct: 358 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL 417
Query: 309 YRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG 368
+R MS GL N+ Y T++ + + GD + A K+ ++ G P+ T L+ GL
Sbjct: 418 FREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCK 477
Query: 369 ASKVSEAKELIG-LVKEKFTKNVDTWNEIEAGL 400
K+ +A + L K K ++ T+N + G+
Sbjct: 478 YGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8LE47 | PPR87_ARATH | No assigned EC number | 0.5847 | 0.9975 | 0.9828 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | PPR336 | PPR336 (pentatricopeptide repeat 336); pentatricopeptide repeat 336 (PPR336); LOCATED IN- mitochondrion, membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- pentatricopeptide (PPR) repeat-containing protein (TAIR-AT1G11630.1); Has 14567 Blast hits to 4457 proteins in 161 species- Archae - 4; Bacteria - 12; Metazoa - 280; Fungi - 232; Plants - 13581; Viruses - 0; Other Eukaryotes - 458 (source- NCBI BLink). ; May be involved in translation t [...] (408 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT1G67580 | protein kinase family protein; protein kinase family protein; FUNCTIONS IN- protein serine/thre [...] (752 aa) | • | 0.855 | |||||||
 | CYCA2;3 | CYCA2;3 (CYCLIN A2;3); cyclin-dependent protein kinase regulator; A2-type cyclin. Negatively re [...] (450 aa) | • | 0.823 | |||||||
 | AT5G60960 | pentatricopeptide (PPR) repeat-containing protein; pentatricopeptide (PPR) repeat-containing pr [...] (521 aa) | • | • | 0.819 | ||||||
 | SIM | SIM (SIAMESE); cyclin-dependent protein kinase inhibitor; Encodes a novel nuclear 14-kD protein [...] (127 aa) | • | 0.784 | |||||||
 | ATSPS1F | ATSPS1F (sucrose phosphate synthase 1F); sucrose-phosphate synthase/ transferase, transferring [...] (1043 aa) | • | 0.768 | |||||||
 | AT1G52930 | brix domain-containing protein; brix domain-containing protein; LOCATED IN- cellular_component [...] (320 aa) | • | 0.766 | |||||||
 | AT1G60770 | pentatricopeptide (PPR) repeat-containing protein; pentatricopeptide (PPR) repeat-containing pr [...] (491 aa) | • | • | • | 0.737 | |||||
 | AT3G58660 | 60S ribosomal protein-related; 60S ribosomal protein-related; FUNCTIONS IN- structural constitu [...] (446 aa) | • | 0.730 | |||||||
 | ROC2 | ROC2 (ROTAMASE CYCLOPHILIN 2); cyclosporin A binding / peptidyl-prolyl cis-trans isomerase; rot [...] (176 aa) | • | 0.730 | |||||||
 | AT3G23620 | brix domain-containing protein; brix domain-containing protein; FUNCTIONS IN- molecular_functio [...] (314 aa) | • | 0.712 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 402 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 1e-15
Identities = 51/217 (23%), Positives = 103/217 (47%), Gaps = 8/217 (3%)
Query: 175 YGI------KPDLDTYNRVIKAFCESSDSSSAYSILAEM--DRKSIKPNASSFGALVAGF 226
YGI KPD +N +I A +S A+ +LAEM + I P+ + GAL+
Sbjct: 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589
Query: 227 YKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNS 286
+ + +V QM+ Y +K +Y + ++S + A ++ D+M KG+KP+
Sbjct: 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649
Query: 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKE 346
V +S + G+ ++A + + G+ + Y +++ +++ AL ++
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709
Query: 347 SIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383
+ P +TM +L+T L +++ +A E++ +K
Sbjct: 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746
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Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 5e-12
Identities = 23/48 (47%), Positives = 26/48 (54%)
Query: 251 VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK 298
V YN I CK K EA L +EM +G+KPN TYS I G CK
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 5e-11
Identities = 54/264 (20%), Positives = 104/264 (39%), Gaps = 7/264 (2%)
Query: 127 EHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNR 186
+ A R K + L FN L+ ++D RV + + G+K D Y
Sbjct: 423 KEAFRFAKLIRNPTLST----FNMLMSVCASSQDIDGALRV-LRLVQEAGLKADCKLYTT 477
Query: 187 VIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG 246
+I +S + + + EM ++ N +FGAL+ G + + +M
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 247 MKSGVSMYNVRIHSLCKLRKCAEAKALLDEML--SKGMKPNSVTYSHFIYGFCKDGNFEE 304
+K ++N I + + A +L EM + + P+ +T + G +
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 305 AKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVT 364
AK+ Y+++ + VY V + GD++ AL + KG P+ +LV
Sbjct: 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 365 GLAGASKVSEAKELIGLVKEKFTK 388
A + +A E++ +++ K
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIK 681
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Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 9e-11
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 11/197 (5%)
Query: 175 YGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALV--AGFYK--EE 230
Y IK + Y + + + D A SI +M +K +KP+ F ALV AG ++
Sbjct: 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667
Query: 231 KYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYS 290
+E +LQ + G+K G Y+ + + + +A L +++ S ++P T +
Sbjct: 668 AFE----ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723
Query: 291 HFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMC-KGGDYETALGFCKESIA 349
I C+ +A + M GL PN+ Y +++ + D + L ++
Sbjct: 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITY-SILLVASERKDDADVGLDLLSQAKE 782
Query: 350 KGWVPNFTTMKSLVTGL 366
G PN + + TGL
Sbjct: 783 DGIKPNLVMCRCI-TGL 798
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Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 42/206 (20%), Positives = 90/206 (43%), Gaps = 15/206 (7%)
Query: 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL 181
A + A ++ + E+ ++ + + + + + D+ ++ + K G+KPD
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDE 649
Query: 182 DTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALV-----AGFYKE--EKYED 234
++ ++ + D A+ IL + ++ IK S+ +L+ A +K+ E YED
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709
Query: 235 VNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIY 294
+ + ++ VS N I +LC+ + +A +L EM G+ PN++TYS +
Sbjct: 710 IKSI-------KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762
Query: 295 GFCKDGNFEEAKKFYRIMSNSGLSPN 320
+ + + G+ PN
Sbjct: 763 ASERKDDADVGLDLLSQAKEDGIKPN 788
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Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 1e-09
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 284 PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333
P+ VTY+ I G+CK G EEA K + M G+ PN Y ++ +CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 4e-08
Identities = 44/201 (21%), Positives = 95/201 (47%), Gaps = 14/201 (6%)
Query: 68 TPESHLDRLAFSIAINKLSEA---NYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN 124
TPE ++IA+N S+ ++ I +++ +PD E F + + + G A
Sbjct: 613 TPE------VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD---EVFFSALVDVAGHAG 663
Query: 125 MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTY 184
+ A ++ + ++ ++++L+ A + AK++K+ ++ + K+ ++P + T
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTM 722
Query: 185 NRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244
N +I A CE + A +L+EM R + PN ++ L+ +++ + +L +
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782
Query: 245 YGMKSGVSMYNVRIHSLCKLR 265
G+K + M I LC R
Sbjct: 783 DGIKPNLVMCRC-ITGLCLRR 802
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Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 5e-08
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 179 PDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK 228
PD+ TYN +I +C+ A + EM ++ IKPN ++ L+ G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 2e-07
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 280 KGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMS 313
KG+KP+ VTY+ I G C+ G +EA + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
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This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 8e-06
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS 321
VTY+ I G CK G EEA + ++ M G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
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This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-05
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 253 MYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNS 286
YN I LCK + EA L EM +G++P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 8/122 (6%)
Query: 209 RKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYN--VRIHSLCKLRK 266
AS++ ALV + V V +E G + M N + +H C +
Sbjct: 116 GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM-- 173
Query: 267 CAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFT 326
+A+ L DEM + N ++ I G GN+ EA +R M G +
Sbjct: 174 LIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV 229
Query: 327 MV 328
M+
Sbjct: 230 ML 231
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 59/278 (21%), Positives = 116/278 (41%), Gaps = 30/278 (10%)
Query: 134 KEMDEHKLRH----SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIK 189
+E+ H +R V NAL+ D + VF P+ D ++N +I
Sbjct: 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR-----DCISWNAMIS 261
Query: 190 AFCESSDSSSAYSILAEMDRKSIKPNASSFGALVA--GFYKEEKYEDVNKVLQMMERYGM 247
+ E+ + + M S+ P+ + ++++ +E+ + M Y +
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG------REMHGYVV 315
Query: 248 KSG----VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFE 303
K+G VS+ N I L EA+ + M +K ++V+++ I G+ K+G +
Sbjct: 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPD 371
Query: 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKG-GDYETALGFCKESIAKGWVPNFTTMKSL 362
+A + Y +M +SP+ + V C GD + + + + KG + +L
Sbjct: 372 KALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430
Query: 363 VTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400
+ + + +A E+ + E K+V +W I AGL
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGL 465
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 57/270 (21%), Positives = 108/270 (40%), Gaps = 17/270 (6%)
Query: 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYG 176
I +Y + E A F M E + A+N++L + +E ++ E + G
Sbjct: 266 IDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDS-G 320
Query: 177 IKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVN 236
+ D T++ +I+ F + A A + R + + ALV + K + ED
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 237 KVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGF 296
V M R + S +N I + +A + + M+++G+ PN VT+ +
Sbjct: 381 NVFDRMPRKNLIS----WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
Query: 297 CKDGNFEEAKKFYRIMS-NSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN 355
G E+ + ++ MS N + P + Y M+ + + G + A + +
Sbjct: 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-------P 489
Query: 356 FTTMKSLVTGLAGASKVSEAKELIGLVKEK 385
F ++ L A ++ + EL L EK
Sbjct: 490 FKPTVNMWAALLTACRIHKNLELGRLAAEK 519
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 144 SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFC 192
V +N L+ +E ++F E K GIKP++ TY+ +I C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEM-KKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 4e-04
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 181 LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKP 214
L+TYN ++ A ++ D A ++L EM +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL 317
VTY+ I G+CK G EEA + ++ M G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.002
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 176 GIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207
G+KPD+ TYN +I C + A +L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 183 TYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNA 216
TYN +I C++ A + EM + I+P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP 319
TY+ + K G+ + A M SGL P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 64/288 (22%), Positives = 115/288 (39%), Gaps = 43/288 (14%)
Query: 145 VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSIL 204
++AL+ A K + VK V+ ++ G +PD NRV+ + A +
Sbjct: 123 ASTYDALVEACIALKSIRCVKAVY-WHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181
Query: 205 AEMDRKSIKPNASSFGALV-AGFYKE------EKYEDVN----KVLQMMERYGMKSGVSM 253
EM +++ + G LV AG Y+E E +ED + + +M R G +
Sbjct: 182 DEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241
Query: 254 YNVRIHSLCKLR------------------KCA---EAKALLDEMLSKGMKPNSVTYSHF 292
++H C L+ KC +A+ + D M K +V ++
Sbjct: 242 AGQQLHC-CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSM 296
Query: 293 IYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGW 352
+ G+ G EEA Y M +SG+S + + M+ + E A I G+
Sbjct: 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356
Query: 353 VPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFT-KNVDTWNEIEAG 399
+ +LV + ++ +A+ V ++ KN+ +WN + AG
Sbjct: 357 PLDIVANTALVDLYSKWGRMEDARN----VFDRMPRKNLISWNALIAG 400
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 252 SMYNVRIHSLCKLRKCAEAKALLDEMLSKGM 282
YN I CK K EA L EM KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 402 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.8 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.73 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.71 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.71 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.69 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.66 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.63 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.61 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.6 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.58 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.58 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.53 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.52 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.51 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.51 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.5 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.49 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.48 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.48 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.48 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.45 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.43 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.38 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.38 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.37 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.34 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.31 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.31 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.3 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.29 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.28 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.28 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.27 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.26 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.23 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.22 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.21 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.2 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.17 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.15 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.14 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.12 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.1 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.1 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.06 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.02 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.01 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.95 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.94 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.92 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.92 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.9 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.89 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.88 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.88 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.87 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.82 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.82 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.81 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.81 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.8 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.8 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.8 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.79 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.79 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.79 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.75 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.74 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.74 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.74 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.73 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.73 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.72 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.7 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.69 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.69 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.65 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.64 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.6 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.6 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.6 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.57 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.57 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.55 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.54 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.49 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.49 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.45 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.44 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.41 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.41 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.4 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.39 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.34 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.31 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.28 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.28 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.21 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.21 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.21 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.21 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.2 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.18 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.17 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.14 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.14 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.99 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.97 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.97 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.95 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.94 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.92 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.9 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.88 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.87 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.86 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.86 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.85 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.85 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.84 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.83 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.83 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.81 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.79 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.79 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.77 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.76 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.76 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.75 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.74 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.74 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.72 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.71 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.71 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.67 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.67 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.66 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.64 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.6 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.59 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.59 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.58 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.55 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.53 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.52 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.49 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.49 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.48 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.47 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.44 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.43 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.41 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.33 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.3 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.29 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.23 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.23 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.2 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.19 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.19 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.17 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.15 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.11 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.09 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.08 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.01 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.01 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.0 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.0 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.96 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.86 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.84 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.83 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.79 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.78 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.77 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 96.75 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.73 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.71 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.66 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.65 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.62 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.61 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.53 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.48 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.45 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.43 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.42 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.4 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.39 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.34 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.34 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.29 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.27 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.26 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 96.26 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.15 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.14 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.05 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.98 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.95 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.94 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.94 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.93 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.9 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.84 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.79 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.74 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.73 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.73 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.61 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 95.61 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.61 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.49 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.47 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.42 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.37 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.36 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.32 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.2 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.11 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.03 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.02 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.95 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 94.83 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.74 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.59 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.51 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.41 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.36 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 94.33 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.32 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 94.27 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.16 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.11 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.1 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 94.01 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 93.74 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.71 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.69 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 93.63 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 93.58 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.32 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.25 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.16 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.12 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.0 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.74 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.58 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.57 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.44 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.28 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.21 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.18 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.11 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.05 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.03 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.67 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.53 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.32 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.31 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.19 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.19 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 90.9 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.52 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.32 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.31 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.17 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.96 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.81 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.75 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.51 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.4 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.0 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 88.91 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 88.77 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.53 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.68 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.51 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.96 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.84 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.79 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 86.7 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 86.63 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.44 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.86 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.63 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 85.56 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 85.11 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.81 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 84.69 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 84.62 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.47 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 83.99 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.87 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 82.85 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.34 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.22 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.81 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 81.64 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.49 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 81.0 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.94 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.57 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.33 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 80.29 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-57 Score=437.94 Aligned_cols=362 Identities=16% Similarity=0.203 Sum_probs=304.0
Q ss_pred CCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHH
Q 041936 37 TSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHS 116 (402)
Q Consensus 37 ~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 116 (402)
++...++.+++.+...++.+.|.++|+.+... +..||..+|+.+|.+|++.|++++|.++|++|...+..|+..+|+.+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34556677788888888888888888887665 67788888888888888888888888888888877778888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh-cCCCCCHHHHHHHHHHHHhcC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT-YGIKPDLDTYNRVIKAFCESS 195 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~~ 195 (402)
|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. .|+.||..+|+++|.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 8888888888888888888888888888888888888888888888888888888542 567888888888888888888
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 041936 276 EMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN 355 (402)
Q Consensus 276 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 355 (402)
+|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhc-CCCChhhHHHHHhc
Q 041936 356 FTTMKSLVTGLAGASKVSEAKELIGLVKEK-FTKNVDTWNEIEAG 399 (402)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~ 399 (402)
..+|+.++.+|.+.|++++|.+++++|.+. ..||..+|++|+..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888888888888888888888888888775 77888888888754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=436.71 Aligned_cols=362 Identities=18% Similarity=0.267 Sum_probs=336.4
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHhhcCCCC-------------------------------CCCHHHHHHHHHHHHhc
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAAALTPES-------------------------------HLDRLAFSIAINKLSEA 88 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~ 88 (402)
..+..++..+.+.|+++.|+++|++|....-. .||..+|+.++.+|++.
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASS 450 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 33444555555556666666666666443211 17889999999999999
Q ss_pred CCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 041936 89 NYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVF 168 (402)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 168 (402)
|++++|.++|+.|...+..++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 041936 169 IEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR--KSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG 246 (402)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (402)
++| ...|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|
T Consensus 531 ~~M-~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 531 GIM-RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHH-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999 5569999999999999999999999999999999986 6789999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 041936 247 MKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFT 326 (402)
Q Consensus 247 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 326 (402)
+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc-CCCChhhHHHHHhcCCC
Q 041936 327 MVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK-FTKNVDTWNEIEAGLPQ 402 (402)
Q Consensus 327 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 402 (402)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+. ..||..+|++++.+|++
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999875 88999999999999863
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-52 Score=400.37 Aligned_cols=349 Identities=14% Similarity=0.179 Sum_probs=310.3
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHH
Q 041936 41 KTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILY 120 (402)
Q Consensus 41 ~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 120 (402)
.++.++..+...|++++|+++|+++....+..||..+|+.++.+|++.++++.+.+++..|...+..++..+++.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 57788999999999999999999998777788999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC--------------------
Q 041936 121 GQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD-------------------- 180 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------------- 180 (402)
.+.|++++|.++|++|. .||..+||.++.+|++.|++++|.++|++|.+ .|+.|+
T Consensus 169 ~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 169 VKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred hcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999997 58999999999999999999999999999943 355555
Q ss_pred ---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 181 ---------------LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 181 ---------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 44556777788888888888888888853 47788888888888888888888888888888
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 041936 246 GMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYF 325 (402)
Q Consensus 246 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 325 (402)
|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||..+|+
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n 395 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWN 395 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHH
Confidence 888888888888888888888888888888888888888888888888888888899999998888864 6888999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc--CCCChhhHHHHHhcCCC
Q 041936 326 TMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK--FTKNVDTWNEIEAGLPQ 402 (402)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 402 (402)
.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+. ..|+..+|++|+.+|++
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999763 77899999999998864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-52 Score=399.73 Aligned_cols=349 Identities=14% Similarity=0.176 Sum_probs=316.6
Q ss_pred CCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHH
Q 041936 37 TSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHS 116 (402)
Q Consensus 37 ~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 116 (402)
++...++.++..+...++.+.+.+++..+... +..||..+|+.++..|++.|++++|.++|++|.. ++..+|+.+
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~l 195 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTI 195 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHH
Confidence 35566778888888888888888888777655 6778888888888888888888888888888863 567788888
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCC-----------------------------------HHHHHHHHHHHHHcCCH
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHS-----------------------------------VGAFNALLLALTIAKDY 161 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~~~~~ 161 (402)
+.+|.+.|++++|+++|++|.+.|+.|+ ..+|+.|+.+|++.|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 8888888888888888888877665554 45567888999999999
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQM 241 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (402)
++|.++|++|. ++|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..
T Consensus 276 ~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 350 (697)
T PLN03081 276 EDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350 (697)
T ss_pred HHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999995 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041936 242 MERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS 321 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 321 (402)
|.+.|+.||..+|++++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 9999999999999999999999999999999999996 469999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 322 SVYFTMVYFMCKGGDYETALGFCKESIA-KGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
.||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|++++|.+++++|. ..|+..+|++|+.+|
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTAC 504 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Confidence 9999999999999999999999999986 5999999999999999999999999999998875 679999999999987
Q ss_pred C
Q 041936 401 P 401 (402)
Q Consensus 401 ~ 401 (402)
.
T Consensus 505 ~ 505 (697)
T PLN03081 505 R 505 (697)
T ss_pred H
Confidence 4
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-50 Score=395.63 Aligned_cols=350 Identities=15% Similarity=0.186 Sum_probs=275.8
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH
Q 041936 39 KDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII 118 (402)
Q Consensus 39 ~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 118 (402)
...++.++..+.+.|+.+.|.++|+.+. .||..+|+.+|.+|++.|++++|.++|++|...+..|+..+|+.++.
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 3445677788888888888888888774 24667888888888888888888888888887777888888888888
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChh
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSS 198 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 198 (402)
+|.+.|+.+.|.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~ 371 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPD 371 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHH
Confidence 888888888888888888888888888888888888888888888888888874 467778888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 199 SAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 199 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
+|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|++++.+|++.|++++|.++|++|.
T Consensus 372 ~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred HHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 88888888887788888888888887777777777777777777777777777777777777777777666666666553
Q ss_pred HC------------------------------CC----------------------------------------------
Q 041936 279 SK------------------------------GM---------------------------------------------- 282 (402)
Q Consensus 279 ~~------------------------------~~---------------------------------------------- 282 (402)
+. ++
T Consensus 452 ~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi 531 (857)
T PLN03077 452 EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALL 531 (857)
T ss_pred CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHH
Confidence 32 12
Q ss_pred -------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 041936 283 -------------------KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGF 343 (402)
Q Consensus 283 -------------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 343 (402)
.||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++
T Consensus 532 ~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 3455567777778888888888888888888888888888888888888888888888888
Q ss_pred HHHHH-hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 344 CKESI-AKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 344 ~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
|+.|. +.|+.|+..+|+.++.+|.+.|++++|.+++++|. ..||..+|++|+.+|
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--~~pd~~~~~aLl~ac 667 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP--ITPDPAVWGALLNAC 667 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Confidence 88887 56888888888888888888888888888888875 568888888888876
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=392.83 Aligned_cols=351 Identities=14% Similarity=0.102 Sum_probs=279.5
Q ss_pred CccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHH
Q 041936 38 SKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSI 117 (402)
Q Consensus 38 ~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 117 (402)
+...++.++..+.+.|++++|+++|+.|... +..||..+|+.++.+|+..++++.+.+++..+...+..++..+++.++
T Consensus 151 d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 3456777777777777888888888777654 677777888888888777777777777777777777777777888888
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 118 ILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|.++|++| ...|+.||..||+.++.+|++.|++
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M-~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHHHhcCCh
Confidence 88888888888888888876 467778888888888888888888888888 4457888888888888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 277 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (402)
+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888775 467778888888888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH
Q 041936 278 LSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFT 357 (402)
Q Consensus 278 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 357 (402)
.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~v 456 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVI 456 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCee
Confidence 888888888888888888888888888888888888888888888888888888888888888888887753 5677
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcCCC
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLPQ 402 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 402 (402)
+|+.++.+|.+.|+.++|.++|++|.....||..||++++.+|++
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR 501 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh
Confidence 888888888888888888888888877778888888888887753
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-22 Score=203.74 Aligned_cols=342 Identities=13% Similarity=0.023 Sum_probs=207.1
Q ss_pred HHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC
Q 041936 46 LTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANM 125 (402)
Q Consensus 46 l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 125 (402)
...+...|+++.|.+.|+.+....+ .+...+..+...+...|++++|.++++.+.. ..+.+...+..+...+.+.|+
T Consensus 472 ~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 548 (899)
T TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVLT-IDPKNLRAILALAGLYLRTGN 548 (899)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHHHHcCC
Confidence 3334444555555555544432211 1223444444455555555555555555542 123334445555555555555
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041936 126 TEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILA 205 (402)
Q Consensus 126 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 205 (402)
.++|..+++++.+.+ +.+...+..++..+...|++++|..+++.+.+. .+.+...|..+...+...|++++|...|+
T Consensus 549 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 625 (899)
T TIGR02917 549 EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFK 625 (899)
T ss_pred HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555443 344455555556666666666666666665432 24455566666666666666666666666
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 041936 206 EMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPN 285 (402)
Q Consensus 206 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 285 (402)
++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|..+++.+.+.+ +.+
T Consensus 626 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 702 (899)
T TIGR02917 626 KLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKA 702 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 666543 3345556666666666666666666666666543 3445666666666666677777777776666653 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041936 286 SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTG 365 (402)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (402)
...+..+...+...|++++|...|..+...+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~ 779 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAEL 779 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5566667777777777777777777777653 444566667777777777777777777777654 5567777777777
Q ss_pred HHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhc
Q 041936 366 LAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAG 399 (402)
Q Consensus 366 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 399 (402)
|.+.|++++|.+.|+++.+..|++...++.+...
T Consensus 780 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 813 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWL 813 (899)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7778888888888888877777777777666544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-22 Score=202.15 Aligned_cols=337 Identities=13% Similarity=0.068 Sum_probs=200.1
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 041936 51 SESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAV 130 (402)
Q Consensus 51 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 130 (402)
..|+.+.|..+++.+....+ .+...+..++..+...|++++|.++++.+.. ..+.+...+..+..++...|++++|.
T Consensus 545 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELNP--QEIEPALALAQYYLGKGQLKKALAILNEAAD-AAPDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCc--cchhHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34444444444444432211 1233444445555555555555555555542 22334445555555555555555555
Q ss_pred HHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 131 RTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
..|+.+.+.+ +.+...+..+..++...|++++|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.+.
T Consensus 622 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 622 SSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555443 3444455555555555555555555555554321 333455555556666666666666666665554
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041936 211 SIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYS 290 (402)
Q Consensus 211 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 290 (402)
+ +.+...+..+...+...|++++|.+.|+.+...+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+.
T Consensus 699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 774 (899)
T TIGR02917 699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRT 774 (899)
T ss_pred C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 3 3345556666666666666666666666666543 333555566666666777777777776666653 22556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 041936 291 HFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGAS 370 (402)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (402)
.+...|...|++++|...|+++.+... .+...+..+...+...|+ ++|..+++++.+.. +.+..++..+...+...|
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 677777777777777777777776532 356667777777777777 66777777776653 345566667777778888
Q ss_pred ChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 371 KVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
++++|.+.++++.+..+.+..++..+..+|
T Consensus 852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 881 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALAL 881 (899)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 888888888888887777777777666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-22 Score=180.49 Aligned_cols=294 Identities=11% Similarity=0.087 Sum_probs=227.8
Q ss_pred HHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC---HHHHHHHHHHHHHcCC
Q 041936 84 KLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHS---VGAFNALLLALTIAKD 160 (402)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 160 (402)
.+...|++++|...|+++... .+.+...+..+...+...|++++|..+++.+...+..++ ...+..+...|...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV-DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 456778889999999888843 455667788888888899999999999988876532221 2467778888889999
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHhccCCHHHHH
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPN----ASSFGALVAGFYKEEKYEDVN 236 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~ 236 (402)
+++|..+|+++.+. .+++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999888643 245677888888899999999999999998887653322 123556777788889999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041936 237 KVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG 316 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 316 (402)
+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9999888754 34566777788888899999999999999887633323456788888899999999999999988875
Q ss_pred CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChHHHHHHHHHHHhc
Q 041936 317 LSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG---ASKVSEAKELIGLVKEK 385 (402)
Q Consensus 317 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 385 (402)
.|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.++
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 456666688888888999999999999888875 5788888877777664 45888888888888764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-22 Score=179.62 Aligned_cols=310 Identities=13% Similarity=0.075 Sum_probs=254.0
Q ss_pred HhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCc---hHHHHHHHHHHHhcCC
Q 041936 49 LKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQN---ERFHAHSIILYGQANM 125 (402)
Q Consensus 49 l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~ 125 (402)
....|+++.|++.|+.+....+ .+..++..+...+...|++++|..+++.+...+.... ...+..+...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP--ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3466899999999999976532 3556889999999999999999999999986543322 2467788889999999
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC---HHHHHHHHHHHHhcCChhHHHH
Q 041936 126 TEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD---LDTYNRVIKAFCESSDSSSAYS 202 (402)
Q Consensus 126 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~ 202 (402)
+++|+.+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.....+. ...+..+...+.+.|++++|.+
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999998764 567889999999999999999999999999764322221 2245667888899999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 041936 203 ILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGM 282 (402)
Q Consensus 203 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 282 (402)
.|+++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 999998764 33566788889999999999999999999987652223466888999999999999999999999887
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc---cCChHHHHHHHHHHHhCCCCCCHHHH
Q 041936 283 KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK---GGDYETALGFCKESIAKGWVPNFTTM 359 (402)
Q Consensus 283 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~ 359 (402)
.|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-- 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR-- 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC--
Confidence 456667788999999999999999999999875 6888888888877664 568999999999999887777766
Q ss_pred HHHHHHHHcCCCh
Q 041936 360 KSLVTGLAGASKV 372 (402)
Q Consensus 360 ~~l~~~~~~~g~~ 372 (402)
..|.++|..
T Consensus 355 ----~~c~~cg~~ 363 (389)
T PRK11788 355 ----YRCRNCGFT 363 (389)
T ss_pred ----EECCCCCCC
Confidence 235556553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-20 Score=174.45 Aligned_cols=339 Identities=11% Similarity=-0.008 Sum_probs=273.5
Q ss_pred CccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHH
Q 041936 38 SKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSI 117 (402)
Q Consensus 38 ~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 117 (402)
....+..++..+-..|+++.|+.+++......+..+ ..+..++......|++++|...++++.. ..|.+...+..+.
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~-~~P~~~~a~~~la 117 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR--DLLRRWVISPLASSQPDAVLQVVNKLLA-VNVCQPEDVLLVA 117 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch--hHHHHHhhhHhhcCCHHHHHHHHHHHHH-hCCCChHHHHHHH
Confidence 344556677778889999999999988876655544 3455566667789999999999999983 3566677888889
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 118 ILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
..+...|++++|...+++..+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCH
Confidence 99999999999999999998875 6677889999999999999999999999885542 2233334333 347889999
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH----HHHH
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAE----AKAL 273 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~ 273 (402)
++|...++.+.+....++...+..+..++...|++++|+..+++..... +.+...+..+...+...|++++ |...
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 9999999998876433445555666788899999999999999999875 5567788889999999999986 8999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 041936 274 LDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWV 353 (402)
Q Consensus 274 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 353 (402)
|++..+.... +...+..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|...++++.+.+
T Consensus 273 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-- 348 (656)
T PRK15174 273 WRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK-- 348 (656)
T ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--
Confidence 9999886332 5678899999999999999999999999986422 45677788899999999999999999998864
Q ss_pred CCH-HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC
Q 041936 354 PNF-TTMKSLVTGLAGASKVSEAKELIGLVKEKFTK 388 (402)
Q Consensus 354 ~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 388 (402)
|+. ..+..+..++...|+.++|...|++..+..|.
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 443 34444567889999999999999998876433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-18 Score=163.83 Aligned_cols=306 Identities=9% Similarity=0.071 Sum_probs=251.1
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALT 156 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (402)
-...++..+.+.|++++|..+++..... .+.+...+..++.+....|++++|+..|+++.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~-~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLT-AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHh-CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3456677888999999999999998843 44455666677778888999999999999999876 677888999999999
Q ss_pred HcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 041936 157 IAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVN 236 (402)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 236 (402)
..|++++|...+++..+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHH
Confidence 9999999999999997542 44567788899999999999999999998877642 233344333 3478899999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHH
Q 041936 237 KVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEE----AKKFYRIM 312 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~m 312 (402)
..++.+.+....++...+..+...+.+.|++++|...++++.+.... +...+..+...+...|++++ |...|++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 99999887653344455566678889999999999999999987433 57778889999999999986 89999999
Q ss_pred HhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChh
Q 041936 313 SNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVD 391 (402)
Q Consensus 313 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 391 (402)
.+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...++.+.+..|.+..
T Consensus 277 l~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 277 LQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 88632 256788999999999999999999999999875 556777888899999999999999999999987555543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-17 Score=158.06 Aligned_cols=327 Identities=10% Similarity=-0.007 Sum_probs=180.5
Q ss_pred HHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHH
Q 041936 48 LLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTE 127 (402)
Q Consensus 48 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 127 (402)
.+...|+++.|++.|+.+... .|+...|..+..++.+.|++++|++.++.... ..+.....+..+..+|...|+++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~-l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALE-LDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCCHH
Confidence 445678999999999887643 35677899999999999999999999999884 34556677777888888888888
Q ss_pred HHHHHHHHhHhCC-------------------------------------------------------------------
Q 041936 128 HAVRTFKEMDEHK------------------------------------------------------------------- 140 (402)
Q Consensus 128 ~A~~~~~~~~~~~------------------------------------------------------------------- 140 (402)
+|+..|......+
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 8876543322110
Q ss_pred -----------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC-HHHH
Q 041936 141 -----------------------------------LRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD-LDTY 184 (402)
Q Consensus 141 -----------------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 184 (402)
.+.....|+.+...+...|++++|+..|++.++. .|+ ...|
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l---~P~~~~~~ 368 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL---DPRVTQSY 368 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHH
Confidence 0011122333334444455555555555554322 222 3344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 041936 185 NRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKL 264 (402)
Q Consensus 185 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 264 (402)
..+...+...|++++|...|+++.+.. +.+..+|..+...+...|++++|...|++..+.. +.+...+..+..++.+.
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHC
Confidence 455555555555555555555554432 2234455555555555555555555555555443 23344444555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HhHHHHHHHHHccCChH
Q 041936 265 RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS------SVYFTMVYFMCKGGDYE 338 (402)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~~~g~~~ 338 (402)
|++++|+..|++..... +-+...++.+...+...|++++|...|++..+.....+. ..++.....+...|+++
T Consensus 447 g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 447 GSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 55555555555555431 113445555555555555666666555555543211000 01111111222345566
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 339 TALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
+|..++++..+.. +.+...+..+...+.+.|++++|.+.|++..+.
T Consensus 526 eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 526 EAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666665555543 233344555566666666666666666665543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-16 Score=162.53 Aligned_cols=331 Identities=11% Similarity=0.016 Sum_probs=230.0
Q ss_pred HHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCC-CCchHHH------------H
Q 041936 48 LLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPD-LQNERFH------------A 114 (402)
Q Consensus 48 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~------------~ 114 (402)
.+...|++++|.+.|+.+....+ -+...+..+...+.+.|++++|...|++...... ......+ .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34567899999999988875432 2567889999999999999999999999884322 2221111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH-------
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV------- 187 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l------- 187 (402)
.....+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhc
Confidence 22446778999999999999998876 5677788889999999999999999999986542 2223333222
Q ss_pred -----------------------------------HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH
Q 041936 188 -----------------------------------IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKY 232 (402)
Q Consensus 188 -----------------------------------i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 232 (402)
...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 233445788888888888887763 33556677788888888888
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC--------------------------------
Q 041936 233 EDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK-------------------------------- 280 (402)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------------------------------- 280 (402)
++|...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 88888888877643 223333333333334444444444444332110
Q ss_pred -------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 041936 281 -------GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWV 353 (402)
Q Consensus 281 -------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 353 (402)
..+.+...+..+...+.+.|++++|+..|++..+... .+...+..++..|...|++++|.+.++.+.+.. +
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p 668 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-N 668 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence 0123444566677778888888888888888887532 246777788888888888888888888777653 3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 041936 354 PNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFT 387 (402)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (402)
.+..++..+..++...|++++|.++++.+....+
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 4556666777788888888888888888877543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-16 Score=151.76 Aligned_cols=348 Identities=12% Similarity=0.083 Sum_probs=216.4
Q ss_pred CccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHH
Q 041936 38 SKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSI 117 (402)
Q Consensus 38 ~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 117 (402)
.+..+...+.+..-.|+.++|++++....... ..+...+..+...+...|++++|.+++++.... .+.+...+..++
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 34455667777777888888887777765421 223445777777778888888888888877632 445556666777
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 118 ILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
.++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCh
Confidence 77778888888888888877664 45555 7777777778888888888887776542 22334444455555444444
Q ss_pred hHHH----------------------------------------------HHHHHHHhC-CCCCCHh-hHH----HHHHH
Q 041936 198 SSAY----------------------------------------------SILAEMDRK-SIKPNAS-SFG----ALVAG 225 (402)
Q Consensus 198 ~~a~----------------------------------------------~~~~~~~~~-g~~~~~~-~~~----~l~~~ 225 (402)
++|+ +.++.+.+. ...|+.. .+. ..+.+
T Consensus 167 e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 167 APALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 4333 333333322 1111111 111 11233
Q ss_pred HhccCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCC
Q 041936 226 FYKEEKYEDVNKVLQMMERYGMK-SGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP---NSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~ 301 (402)
+...|++++|+..|+.+.+.+.+ |+. .-..+...|...|++++|+.+|+++.+..... .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 45667788888888887766521 221 12224567777788888888888776542211 12345555666777788
Q ss_pred HHHHHHHHHHHHhCCC-----------CCC---HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 302 FEEAKKFYRIMSNSGL-----------SPN---SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 302 ~~~a~~~~~~m~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
+++|..+++.+..... .|+ ...+..+...+...|+.++|...++++.... +.+...+..+...+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 8888888777776421 122 1234455666777788888888887777654 556677777777777
Q ss_pred cCCChHHHHHHHHHHHhcCCCChhhHH
Q 041936 368 GASKVSEAKELIGLVKEKFTKNVDTWN 394 (402)
Q Consensus 368 ~~g~~~~a~~~~~~~~~~~~~~~~~~~ 394 (402)
..|++++|++.++++.+..|.+...+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 777788888887777776666544443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-16 Score=158.05 Aligned_cols=334 Identities=10% Similarity=-0.008 Sum_probs=243.9
Q ss_pred HHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHH------------HHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHH
Q 041936 45 ALTLLKSESNPEKILEICRAAALTPESHLDRLAF------------SIAINKLSEANYFNGISQYLEELKTRPDLQNERF 112 (402)
Q Consensus 45 ~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 112 (402)
.-.++...|++++|.+.|+.+....+..+....+ ......+.+.|++++|.+.++++... .+.+...
T Consensus 309 Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-~P~~~~a 387 (1157)
T PRK11447 309 LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV-DNTDSYA 387 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHH
Confidence 3455567789999999998886543333322222 12244567889999999999999843 4556677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHH-----------------------------------------
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNAL----------------------------------------- 151 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----------------------------------------- 151 (402)
+..+..++...|++++|++.|++..+.. +.+...+..+
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 466 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ 466 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence 7788889999999999999999988764 3334333322
Q ss_pred -HHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 152 -LLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 152 -~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...+
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCC
Confidence 233456789999999999886542 3356677888999999999999999999988753 223433333333344445
Q ss_pred CHHHHHHHHHHHHHC---------------------------------------CCCCChhhHHHHHHHHHccCCHHHHH
Q 041936 231 KYEDVNKVLQMMERY---------------------------------------GMKSGVSMYNVRIHSLCKLRKCAEAK 271 (402)
Q Consensus 231 ~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~ll~~~~~~~~~~~a~ 271 (402)
+.++|...++.+... ..+.+...+..+...+.+.|++++|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 555554444332110 12455567778888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 272 ALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 272 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
..|++..+.... +...+..++..+...|++++|.+.++...+... .+...+..+..++...|++++|.++++++....
T Consensus 624 ~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 624 AAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999987432 677889999999999999999999998876522 245566778888999999999999999998753
Q ss_pred C--CC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 352 W--VP---NFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 352 ~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
. +| +...+..+...+...|++++|++.|+.....
T Consensus 702 ~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 702 KSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred ccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2 22 2356677788999999999999999998764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-15 Score=148.56 Aligned_cols=343 Identities=10% Similarity=-0.003 Sum_probs=257.8
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 041936 42 TRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYG 121 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 121 (402)
...+-..+...++++.|.+.++......+ .+...+..+...+...|++++|...++++... .+.+.. +..+..++.
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEP--QNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHH
Confidence 45566678889999999999998765432 24556778888899999999999999999844 555566 878888999
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------------------------------
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFI-------------------------------- 169 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------------------------------- 169 (402)
..|++++|+..++++.+.. +.+...+..+..++...+..++|+..++
T Consensus 128 ~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 9999999999999999875 5566666777777777777665555444
Q ss_pred --------------HchhhcCCCCCHH-HHH----HHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhcc
Q 041936 170 --------------EFPKTYGIKPDLD-TYN----RVIKAFCESSDSSSAYSILAEMDRKSIK-PNASSFGALVAGFYKE 229 (402)
Q Consensus 170 --------------~~~~~~~~~p~~~-~~~----~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~ 229 (402)
.+.+.....|+.. .+. ..+..+...|++++|++.|+++.+.+.+ |+. ....+..+|...
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~ 285 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhc
Confidence 3322111122211 111 1133456779999999999999987632 222 223357789999
Q ss_pred CCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHH
Q 041936 230 EKYEDVNKVLQMMERYGMKS---GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGM-----------KPN---SVTYSHF 292 (402)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~l 292 (402)
|++++|+..|+++.+..... .......+..++...|++++|..+++.+.+... .|+ ...+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 99999999999987653111 123456667788999999999999999987631 123 2345567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKV 372 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 372 (402)
...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.+++..... +.+...+......+.+.|++
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCH
Confidence 788899999999999999998863 2357788899999999999999999999999875 45577777888889999999
Q ss_pred HHHHHHHHHHHhcCCCChhh
Q 041936 373 SEAKELIGLVKEKFTKNVDT 392 (402)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~ 392 (402)
++|+.+++++.+..|.|..+
T Consensus 444 ~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 444 RQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHH
Confidence 99999999999987776654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.8e-16 Score=147.00 Aligned_cols=305 Identities=13% Similarity=-0.012 Sum_probs=241.9
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALT 156 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (402)
.+......+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.++...+.+ +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4556777889999999999999998843 3356788889999999999999999999999876 667889999999999
Q ss_pred HcCCHHHHHHHHHHchhhcCC---------------------------CC-CHHHHHHH---------------------
Q 041936 157 IAKDYKEVKRVFIEFPKTYGI---------------------------KP-DLDTYNRV--------------------- 187 (402)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~~~~---------------------------~p-~~~~~~~l--------------------- 187 (402)
..|++++|+..|.......+. .| +...+..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999998766543211111 00 00000000
Q ss_pred ---------HHHH------HhcCChhHHHHHHHHHHhCC-CCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 041936 188 ---------IKAF------CESSDSSSAYSILAEMDRKS-IKP-NASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG 250 (402)
Q Consensus 188 ---------i~~~------~~~~~~~~a~~~~~~~~~~g-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 250 (402)
+..+ ...+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..+++..+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 0000 11257889999999998765 223 45678888889999999999999999998864 344
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 041936 251 VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYF 330 (402)
Q Consensus 251 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 330 (402)
...|..+...+...|++++|...|++..+... .+...|..+...+...|++++|...|++..+... .+...+..+...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHH
Confidence 66888889999999999999999999988742 2577889999999999999999999999998642 246778888899
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC
Q 041936 331 MCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTK 388 (402)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 388 (402)
+.+.|++++|...+++.++.. +.+...+..+...+...|++++|++.|++..+..+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 999999999999999998764 556888999999999999999999999998886443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-15 Score=141.97 Aligned_cols=350 Identities=11% Similarity=0.045 Sum_probs=218.2
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHH
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIIL 119 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 119 (402)
.....++. ..+.|+.+.|++.|+......+..+ +..+ .++..+...|+.++|+.++++.. .+.+........+...
T Consensus 36 ~~y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~l 111 (822)
T PRK14574 36 TQYDSLII-RARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARA 111 (822)
T ss_pred HHHHHHHH-HHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHH
Confidence 44444444 4557899999999988875443321 1223 77777888899999999999988 4444445555555678
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhH
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSS 199 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 199 (402)
+...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHH
Confidence 999999999999999999876 666778888888999999999999999998644 5666666445444544566666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHH----------------------------------------
Q 041936 200 AYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVL---------------------------------------- 239 (402)
Q Consensus 200 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~---------------------------------------- 239 (402)
|++.++++.+.. +-+...+..+..++.+.|-...|.++.
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 888898888863 334555555555554444333322222
Q ss_pred --------HHHHHC-CCCCC-hhhHH----HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041936 240 --------QMMERY-GMKSG-VSMYN----VRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEA 305 (402)
Q Consensus 240 --------~~~~~~-~~~~~-~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 305 (402)
+.+... +-.|. ...|. -.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 222221 00121 11111 12334555666777777777777666443334556666777777777777
Q ss_pred HHHHHHHHhCC-----CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC-------------CCCCHH-HHHHHHHHH
Q 041936 306 KKFYRIMSNSG-----LSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG-------------WVPNFT-TMKSLVTGL 366 (402)
Q Consensus 306 ~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~-~~~~l~~~~ 366 (402)
+.++..+.... ..++......|..+|...+++++|..+++++.+.. ..||-. .+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 77777665432 11233334566666677777777777777666521 011222 223345556
Q ss_pred HcCCChHHHHHHHHHHHhcCCCChhhHHHHHh
Q 041936 367 AGASKVSEAKELIGLVKEKFTKNVDTWNEIEA 398 (402)
Q Consensus 367 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 398 (402)
.-.|+..+|++.++++....|.|...+..+-+
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~ 458 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALAS 458 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66677777777777776666666666555433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-17 Score=142.69 Aligned_cols=329 Identities=12% Similarity=0.060 Sum_probs=237.7
Q ss_pred HHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHH------------
Q 041936 45 ALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERF------------ 112 (402)
Q Consensus 45 ~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------ 112 (402)
.-..++..|+.+.|++.++.+....+. ....|..+..++...|+.+.|.+.|.+...- .+.....
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~p~--fida~inla~al~~~~~~~~a~~~~~~alql-nP~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELKPK--FIDAYINLAAALVTQGDLELAVQCFFEALQL-NPDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcCch--hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc-CcchhhhhcchhHHHHhhc
Confidence 445788899999999999888644322 3467888888888888888888888776621 2211222
Q ss_pred ----------------------HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 041936 113 ----------------------HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIE 170 (402)
Q Consensus 113 ----------------------~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 170 (402)
|..+...+..+|+...|++.|++..+.+ +--...|-.|...|...+.+++|...|.+
T Consensus 199 rl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred ccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 2233333445566666666666655543 23345666666677777777777776666
Q ss_pred chhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 041936 171 FPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPN-ASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKS 249 (402)
Q Consensus 171 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 249 (402)
..... +.....+..+...|-..|.+|.|+..|++.++. .|+ ...|+.|..++-..|++.+|...|.+..... +-
T Consensus 278 Al~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ 352 (966)
T KOG4626|consen 278 ALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN 352 (966)
T ss_pred HHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc
Confidence 54321 223455666666677778888888888887775 344 5678888888888888888888888877654 34
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHH
Q 041936 250 GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPN-SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTM 327 (402)
Q Consensus 250 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l 327 (402)
.....+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|+..|++.+. ++|+ ...|+.+
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~Nm 428 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNM 428 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhc
Confidence 4667788888888888888888888887765 343 45678888889999999999999998887 5676 5788889
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 041936 328 VYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFT 387 (402)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (402)
...|-..|+.+.|.+.+.+++..+ +-=.+.++.|...|-..|+..+|++-+++..+.-|
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999888764 33356788899999999999999999999887533
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-17 Score=142.86 Aligned_cols=298 Identities=14% Similarity=0.072 Sum_probs=177.0
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHH-HHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGA-FNALL 152 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~ 152 (402)
-.++|+.+.+.+-..|++++|+.+++.+.+ ..+...+.|..+..++...|+.+.|.+.|.+..+.+ |+... ...+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aie-l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIE-LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHh-cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 346899999999999999999999999984 345567788889999999999999999999988764 44433 23344
Q ss_pred HHHHHcCCHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccC
Q 041936 153 LALTIAKDYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPN-ASSFGALVAGFYKEE 230 (402)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~ 230 (402)
..+...|++++|...|.+.++. .|. ...|+.|...+-..|+...|++.|++..+. .|+ ...|-.|...|...+
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~---qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIET---QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhh---CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHh
Confidence 4445566666666666555432 222 234555555555555555555555555543 222 334444555554444
Q ss_pred C----------------------------------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 041936 231 K----------------------------------YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 231 ~----------------------------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (402)
. .+-|+..|++..+.. +--...|+.+..++-..|++.+|.+.|.+
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 4 455555554444432 11234455555555555666666666655
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 041936 277 MLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN 355 (402)
Q Consensus 277 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 355 (402)
....... -....+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|...+++.++. .|+
T Consensus 346 aL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~ 420 (966)
T KOG4626|consen 346 ALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPT 420 (966)
T ss_pred HHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cch
Confidence 5544111 2334555556666666666666666555542 233 344555666666666666666666666543 333
Q ss_pred -HHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 356 -FTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 356 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
...|+.+...|-..|+.+.|.+.+.+...-
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 245555666666666666666666655543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.8e-14 Score=135.96 Aligned_cols=345 Identities=10% Similarity=0.065 Sum_probs=237.8
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 041936 44 AALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQA 123 (402)
Q Consensus 44 ~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 123 (402)
..+.++...|+.+.|+..++... .+ ..........+...+...|++++|.++++++.. ..+.+...+..++..+.+.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~-~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~-~dP~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ-SS-MNISSRGLASAARAYRNEKRWDQALALWQSSLK-KDPTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc-cC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHhhc
Confidence 56677777889999999998887 22 222333444446678888999999999999984 4555677777888899999
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhH----
Q 041936 124 NMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSS---- 199 (402)
Q Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~---- 199 (402)
++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +.+...+..++....+.|-...
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 9999999999998876 4555566555555555666666999999987652 3344444555554444443322
Q ss_pred --------------------------------------------HHHHHHHHHhC-CCCCC-HhhH----HHHHHHHhcc
Q 041936 200 --------------------------------------------AYSILAEMDRK-SIKPN-ASSF----GALVAGFYKE 229 (402)
Q Consensus 200 --------------------------------------------a~~~~~~~~~~-g~~~~-~~~~----~~l~~~~~~~ 229 (402)
|+.-++.+... +-.|. ...| .-.+-++...
T Consensus 226 ~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 226 AKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 23333333321 11122 1112 1234566778
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHH
Q 041936 230 EKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG-----MKPNSVTYSHFIYGFCKDGNFEE 304 (402)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~ 304 (402)
|++.++++.|+.+...+.+....+-..+.++|...+.+++|..+|+.+.... ..++......|..++...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 8889999999998887765555677788888888999999999998886642 12244445778888888899999
Q ss_pred HHHHHHHHHhCCC-----------CCC--H-HhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 041936 305 AKKFYRIMSNSGL-----------SPN--S-SVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGAS 370 (402)
Q Consensus 305 a~~~~~~m~~~~~-----------~~~--~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (402)
|..+++++.+... .|| - ..+..++..+.-.|+..+|++.++++.... +-|......+...+...|
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 9999988887311 122 2 334455666778889999999998887765 668888888888888888
Q ss_pred ChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 371 KVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
.+.+|++.++......|.+..+....
T Consensus 465 ~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 465 LPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred CHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 88888888877766655555544433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-13 Score=133.93 Aligned_cols=323 Identities=11% Similarity=0.025 Sum_probs=225.6
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhc-CC-CCCchHHHHHHHHHHHhcCC---HH
Q 041936 53 SNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKT-RP-DLQNERFHAHSIILYGQANM---TE 127 (402)
Q Consensus 53 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~~li~~~~~~~~---~~ 127 (402)
+...++.+.++.+-...+- +......+.-...+.|+.++|.++++.... .+ ...+..+...++..|.+.+. ..
T Consensus 356 ~~~~~~~~~~~~~y~~~~~--~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPA--NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 4445555555555444111 445556666667788888888888888774 21 12244455577777777655 33
Q ss_pred HHHHH----------------------HH---HhHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC
Q 041936 128 HAVRT----------------------FK---EMDEHKLRH--SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD 180 (402)
Q Consensus 128 ~A~~~----------------------~~---~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 180 (402)
++..+ .. ...... ++ +...|..+..++.. ++.++|+..+.+.... .|+
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd 508 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPD 508 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCc
Confidence 33322 11 111111 34 66777878877776 7888888877777544 466
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 041936 181 LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHS 260 (402)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 260 (402)
......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...++...+.. +.....+..+...
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~ 585 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ 585 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 544444455556889999999999887654 4445556677778888899999999998888765 3333333344444
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH
Q 041936 261 LCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETA 340 (402)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 340 (402)
..+.|++++|...+++..+. .|+...|..+..++.+.|++++|+..+++...... -+...+..+..++...|++++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 45569999999999988876 45677888888889999999999999999888632 2466777888888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC
Q 041936 341 LGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKN 389 (402)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 389 (402)
...+++..+.. +-+...+..+..++...|++++|+..+++..+..|.+
T Consensus 663 i~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 663 REMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 99999888865 5577888888889999999999999999988765444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.4e-17 Score=140.35 Aligned_cols=258 Identities=10% Similarity=0.107 Sum_probs=60.8
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC
Q 041936 82 INKLSEANYFNGISQYLEELKTRP-DLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKD 160 (402)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (402)
...+.+.|++++|.++++...... .+.+..++..+...+...++++.|.+.++++...+ +-+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 444445555555555553322122 23334444444444555555555555555555443 2233444444444 45555
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKS-IKPNASSFGALVAGFYKEEKYEDVNKVL 239 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 239 (402)
+++|.+++....+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 93 ~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555443222 2333444444455555555555555555544321 2234444444445555555555555555
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041936 240 QMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 319 (402)
++..+.. +.+....+.++..+...|+.+++.++++...... +.|...+..+..+|...|+.++|..+|++..+.. +.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 5554443 2234444445555555555555444444444332 2233334444445555555555555555544421 11
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHH
Q 041936 320 NSSVYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 320 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
|......+..++...|+.++|.++.+++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 3444444444555555555555444433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.9e-14 Score=118.95 Aligned_cols=305 Identities=16% Similarity=0.201 Sum_probs=217.3
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+..++..+|.++++-...++|.+++++............++.+|.+-. +....+++.+|.+..+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 456889999999999999999999998887777788888888876543 2233778888988888999999999999
Q ss_pred HHHHcCCHHH----HHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHhC----CC----CCCHhhHH
Q 041936 154 ALTIAKDYKE----VKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSS-AYSILAEMDRK----SI----KPNASSFG 220 (402)
Q Consensus 154 ~~~~~~~~~~----a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~----g~----~~~~~~~~ 220 (402)
+..+.|+++. |.+++.+| ++.|+.|...+|..+|..+++.++..+ +..++.++... .+ +.|...|.
T Consensus 282 c~akfg~F~~ar~aalqil~Em-KeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEM-KEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHH-HHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 9999997765 56777888 677999999999999999888887754 44444444432 22 22455677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCC----CCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMERYG----MKSG---VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFI 293 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 293 (402)
..|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 78888888888888887776554321 2233 2335566777788888888888888888877778888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC-Ch--------H-----HHHHHH-------HHHHhCCC
Q 041936 294 YGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGG-DY--------E-----TALGFC-------KESIAKGW 352 (402)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~a~~~~-------~~~~~~~~ 352 (402)
++....|.++-.-++|..++..|...+...-.-++..+++.. +. . -|..++ .++.+.
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~-- 518 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ-- 518 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--
Confidence 888888888888888888888776555555555555555443 11 0 011111 122222
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 353 VPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 353 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
..+....+.+.-.+.+.|..++|.++|..+..+
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 334445566666677888888888888877543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-13 Score=124.25 Aligned_cols=284 Identities=11% Similarity=0.059 Sum_probs=200.2
Q ss_pred cCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHH--HHHHHHHHcCCHHHHH
Q 041936 88 ANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFN--ALLLALTIAKDYKEVK 165 (402)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 165 (402)
.|+++.|.+.+.........| .-.+.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 488888887777655332221 222333344557888888888888888765 44443322 3366788888888888
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhccCCHHHHHHH
Q 041936 166 RVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNA-------SSFGALVAGFYKEEKYEDVNKV 238 (402)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 238 (402)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888886542 445667788888888888899998888888887644222 1233334434444555666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041936 239 LQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS 318 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 318 (402)
++.+.+. .+.+......+...+...|+.++|..++++..+. .||... .++.+....++.+++.+..+...+...
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P- 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG- 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-
Confidence 6665443 2456777888888888999999999999888774 444422 233444456888888888888887632
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 319 PNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 319 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
-|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 25666778888889999999999999988875 68888888888899999999999988887754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-13 Score=123.95 Aligned_cols=285 Identities=11% Similarity=0.082 Sum_probs=219.3
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHH--HHHHHHHhcCCHHHH
Q 041936 52 ESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHA--HSIILYGQANMTEHA 129 (402)
Q Consensus 52 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~A 129 (402)
.|+++.|.+.........+. | ...|-.......+.|+++.|.+.+.++.+. .++..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-P-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-h-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 58999999887765443222 1 223434455558899999999999998743 33332222 336688999999999
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH------HHHHHHHHHHHhcCChhHHHHH
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL------DTYNRVIKAFCESSDSSSAYSI 203 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~~~~~~~~~a~~~ 203 (402)
...++.+.+.+ +-+......+...|.+.|++++|.+++..+.+.....++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999887 7788899999999999999999999999996553332221 1334444444455666777777
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 041936 204 LAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMK 283 (402)
Q Consensus 204 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (402)
++.+.+. .+.+......+...+...|+.++|.+++++..+. +++... .++.+.+..++.+++.+..+...+....
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 7776544 3557888999999999999999999999999874 455422 2334445669999999999999987433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 284 PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 284 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
|...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667889999999999999999999999984 68999999999999999999999999998765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-13 Score=124.98 Aligned_cols=299 Identities=10% Similarity=-0.002 Sum_probs=209.9
Q ss_pred HHHHHHHH--HhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 78 FSIAINKL--SEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 78 ~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
...+..++ ...|+++.|.+.+....+.. +.....+.....++.+.|+++.|.+.+.+..+....+.....-.....+
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 34444444 34689999999998876432 2223334455667888899999999999987653122223444457888
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH-HHHHHH---hccCC
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFG-ALVAGF---YKEEK 231 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~l~~~~---~~~~~ 231 (402)
...|+++.|...++.+.+.. +-+......+...+...|++++|.+.+..+.+.++. +...+. .-..++ ...+.
T Consensus 164 l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999996653 446667888999999999999999999999988654 333332 111211 22233
Q ss_pred HHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHH
Q 041936 232 YEDVNKVLQMMERYGM---KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVT---YSHFIYGFCKDGNFEEA 305 (402)
Q Consensus 232 ~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~a 305 (402)
.+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHH
Confidence 3333345554444321 2377888889999999999999999999999873 33331 11122223345778888
Q ss_pred HHHHHHHHhCCCCCC-H--HhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 041936 306 KKFYRIMSNSGLSPN-S--SVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLV 382 (402)
Q Consensus 306 ~~~~~~m~~~~~~~~-~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 382 (402)
.+.++...+. .|+ . ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 319 ~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 319 EKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888887765 233 3 5667889999999999999999996444444789988999999999999999999999987
Q ss_pred Hh
Q 041936 383 KE 384 (402)
Q Consensus 383 ~~ 384 (402)
..
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 55
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=137.29 Aligned_cols=262 Identities=15% Similarity=0.120 Sum_probs=115.6
Q ss_pred HHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC
Q 041936 46 LTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANM 125 (402)
Q Consensus 46 l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 125 (402)
-.++...|+++.|+++++..........|...|..+.......++++.|.+.++.+... .+.+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-DKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc-ccccc
Confidence 45566779999999999654333212234556666667777789999999999999844 33466667777777 79999
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041936 126 TEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILA 205 (402)
Q Consensus 126 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 205 (402)
+++|.+++....+. .++...+..++..+...++++++.++++.+......+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887654 4667778889999999999999999999986544456788889999999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 041936 206 EMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPN 285 (402)
Q Consensus 206 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 285 (402)
+..+.. +-|......++..+...|+.+++.++++...+.. +.+...+..+..+|...|+.++|...|++..... +.|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 999873 3357788999999999999999999998887765 5666778899999999999999999999998863 337
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041936 286 SVTYSHFIYGFCKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 314 (402)
......+..++...|+.++|.++..+...
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 88888999999999999999999887654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-13 Score=110.99 Aligned_cols=297 Identities=11% Similarity=0.094 Sum_probs=219.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCH------HHHHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSV------GAFNA 150 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~ 150 (402)
.|..-++.+. .++.++|.++|-+|. ...+.+.+...++...|.+.|..|.|+++.+.+.++ ||. .....
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l-~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~q 112 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEML-QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQ 112 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHH-hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence 4544444443 457889999998888 466777888888999999999999999999988763 332 33455
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----hhHHHHHHHH
Q 041936 151 LLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNA----SSFGALVAGF 226 (402)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~ 226 (402)
|..-|...|-+|.|+.+|..+.+.. ..-.....-|+..|-...+|++|+++-+++.+.+-++.. ..|.-+...+
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 6777888999999999998886432 223456777888999999999999999988887644432 3466677777
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041936 227 YKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAK 306 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 306 (402)
....+.+.|...+.+..+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++..
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 191 LASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 77888999999999888765 44455555666888899999999999999998855444567788899999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChHHHHHHHHHHH
Q 041936 307 KFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG---ASKVSEAKELIGLVK 383 (402)
Q Consensus 307 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 383 (402)
.++.++.+... ....-..+-.......-.+.|..++.+-+.+ +|+...+..++..-.. .|...+...++..|.
T Consensus 270 ~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 270 NFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 99999888643 3333444444445555667777777666655 7899999999887654 345666666777766
Q ss_pred hc
Q 041936 384 EK 385 (402)
Q Consensus 384 ~~ 385 (402)
..
T Consensus 346 ge 347 (389)
T COG2956 346 GE 347 (389)
T ss_pred HH
Confidence 53
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-13 Score=121.63 Aligned_cols=290 Identities=11% Similarity=0.027 Sum_probs=211.1
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 041936 51 SESNPEKILEICRAAALTPESHLDR-LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHA 129 (402)
Q Consensus 51 ~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 129 (402)
..|+++.|.+.+...... .|++ ..+-.......+.|+++.|.++++...+................+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 368999999999776543 2333 344455677888899999999999987433222223444457788999999999
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHH-HHHH---HHHhcCChhHHHHHHH
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYN-RVIK---AFCESSDSSSAYSILA 205 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~---~~~~~~~~~~a~~~~~ 205 (402)
...++.+.+.. |.+...+..+...+...|++++|.+++..+.+. ++. +...+. .-.. .....+..++..+.+.
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999886 678888999999999999999999999999654 333 332231 1111 1133333333444555
Q ss_pred HHHhCC---CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHccCCHHHHHHHHHHHHH
Q 041936 206 EMDRKS---IKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSM---YNVRIHSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 206 ~~~~~g---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (402)
.+.+.. .+.+...+..+...+...|+.++|.+++++..+.. |+... .....-.....++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 555442 12378889999999999999999999999999865 43331 12222233445788899999998887
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 280 KGMKPNS--VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 280 ~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6222 33 556688899999999999999999644444578988899999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-12 Score=121.63 Aligned_cols=337 Identities=13% Similarity=0.111 Sum_probs=260.9
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH
Q 041936 39 KDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII 118 (402)
Q Consensus 39 ~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 118 (402)
++.+..|-.++.+ |+.++|.+++.+...+.+. ....|..+...+-+.|+.+++...+-.+- .-.+.+...|..+..
T Consensus 140 ~~ll~eAN~lfar-g~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 140 RQLLGEANNLFAR-GDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAA-HLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCChHHHHHHHH
Confidence 4555566666665 9999999999988766433 55789999999999999999988776655 445677799999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHH----HHHHHHHHhc
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTY----NRVIKAFCES 194 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~----~~li~~~~~~ 194 (402)
...+.|.++.|.-.|.+..+.+ +++...+-.-...|-+.|+...|.+-|.++....+ +.|..-+ -.+++.+...
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987 67777777778899999999999999999965422 2222223 3345667777
Q ss_pred CChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-------------------------
Q 041936 195 SDSSSAYSILAEMDRK-SIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMK------------------------- 248 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------------- 248 (402)
++-+.|.+.++..... +-..+...++++...+.+...++.|......+......
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 8889999999887763 23446678889999999999999999888777652211
Q ss_pred --CChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 041936 249 --SGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGM--KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVY 324 (402)
Q Consensus 249 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 324 (402)
++..+ -.+.-++.+.+..+....+...+....+ .-+...|.-+..+|...|++.+|+.+|..+......-+...|
T Consensus 374 ~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 22222 1223344455555555666666666553 335668889999999999999999999999987555568899
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 325 FTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
-.+..+|...|..++|.+.++..+... +.+...-..|...+.+.|+.++|.+++..+.
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999874 5566666778888999999999999999865
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-13 Score=112.55 Aligned_cols=303 Identities=17% Similarity=0.241 Sum_probs=227.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHH--HHhcCCHHH-HHHHHHHhHhCC-------------
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIIL--YGQANMTEH-AVRTFKEMDEHK------------- 140 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~-A~~~~~~~~~~~------------- 140 (402)
+=+.++. +...|.+..+--+|+.|...+.+.++.+-..++.. |....++-- -.+.|-.|...|
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 4444444 45678889999999999988888888776666542 322222211 122233332211
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 041936 141 ------LRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKP 214 (402)
Q Consensus 141 ------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~ 214 (402)
.+.+..+|..+|.++|+-...+.|.++|++. .....+.+..+||.+|.+-.-.. ..+++.+|....+.|
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~-~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEH-RAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTP 271 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHH-HHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCC
Confidence 2456788999999999999999999999998 44466788899999987654332 278899999999999
Q ss_pred CHhhHHHHHHHHhccCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH-HHHHHHHHHH----CCCCC-
Q 041936 215 NASSFGALVAGFYKEEKYED----VNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAE-AKALLDEMLS----KGMKP- 284 (402)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~p- 284 (402)
|..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ...+|
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999998765 55778899999999999999999999999888755 4444444443 22333
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 041936 285 ---NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG----LSPN---SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVP 354 (402)
Q Consensus 285 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 354 (402)
|...|...+..|....+.+-|.++-.-+.... +.|+ ..-|..+..+.|.....+....+++.|+-.-+-|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 45567788888889999999988877665431 2233 2345677778888889999999999999887788
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 355 NFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
+..+...++++..-.|.++-..++|.++..-
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 9999999999999999999998998888764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-12 Score=127.92 Aligned_cols=333 Identities=9% Similarity=0.037 Sum_probs=244.8
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcCCcc---hHHHH------------------
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAAAL-TPESHLDRLAFSIAINKLSEANYFN---GISQY------------------ 97 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~------------------ 97 (402)
..+..+--.+...|+.++|-++++.... +....++...-..++..+.+.+... ++..+
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG 456 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh
Confidence 3455566667778889999999988866 4445555556667777777776522 22222
Q ss_pred ----HHHhh-c-CCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041936 98 ----LEELK-T-RPDLQ--NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFI 169 (402)
Q Consensus 98 ----~~~~~-~-~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 169 (402)
++... . ...+. +...+..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...|+
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 11111 0 11233 56677777777766 8999999988887765 3555444445556678999999999999
Q ss_pred HchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 041936 170 EFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKS 249 (402)
Q Consensus 170 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 249 (402)
++... +|+...+..+...+.+.|++++|.+.+++..+.+ +.+...+..+.......|++++|...+++..+.. |
T Consensus 534 ka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P 607 (987)
T PRK09782 534 KISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--P 607 (987)
T ss_pred HHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--C
Confidence 87533 5566667777888899999999999999998864 2233344444445556699999999999998865 6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041936 250 GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVY 329 (402)
Q Consensus 250 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 329 (402)
+...|..+..++.+.|++++|...+++..+.... +...++.+..++...|+.++|+..+++..+... -+...+..+..
T Consensus 608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~ 685 (987)
T PRK09782 608 SANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAY 685 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 7888999999999999999999999999987432 567788888899999999999999999988633 25678889999
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 330 FMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
++...|++++|...+++..+.. +-+..+.........+..+++.|.+-++....
T Consensus 686 al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 686 VNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998864 22334545555666666777777777666554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-12 Score=107.93 Aligned_cols=273 Identities=11% Similarity=0.091 Sum_probs=211.7
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH--HHHHHHHHHHHhcCCh
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL--DTYNRVIKAFCESSDS 197 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~ 197 (402)
+.-.++.++|.+.|-+|.+.. +.+..+.-+|.+.|-+.|..|.|+++.+.+.++.+.+-+. .....|.+-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 344678999999999999865 5666777789999999999999999999997654433322 2345677888999999
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHccCCHHHHHHH
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG----VSMYNVRIHSLCKLRKCAEAKAL 273 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~ 273 (402)
|.|+++|..+.+.| ..-......|+..|-...+|++|+++-+++.+.+-.+. ...|.-+...+....+++.|...
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999875 33566788999999999999999999999988764332 34566777777788999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 041936 274 LDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWV 353 (402)
Q Consensus 274 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 353 (402)
+.+..+.... .+..-..+.+.+...|+++.|.+.++...+.+...-..+...|..+|...|+.++...++..+.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 9999887433 3445556778889999999999999999998766667888999999999999999999999998873
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHh
Q 041936 354 PNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEA 398 (402)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 398 (402)
+....-..+.+.-....-.+.|...+.+-..+ .|+...+..+|.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-~Pt~~gf~rl~~ 323 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR-KPTMRGFHRLMD 323 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh-CCcHHHHHHHHH
Confidence 34444444555444455556666665554443 466666666654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-12 Score=112.71 Aligned_cols=299 Identities=11% Similarity=0.017 Sum_probs=209.3
Q ss_pred CCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC--CCHHHHHHHHHHHHHcCCHH-HHH
Q 041936 89 NYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLR--HSVGAFNALLLALTIAKDYK-EVK 165 (402)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~-~a~ 165 (402)
.+.+++.+-.+.+...|.+....+-+....+.-...+++.|+.+|+++.+...- .|..+|..++..--....+. -|.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 344445544455544555555444444455555666667777777766655310 23445554443222211111 122
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 166 RVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
.+++ + . +--+.|+.++.+-|.-.++.++|...|++.++.+ +-....|+.+.+-|....+...|.+.|+...+.
T Consensus 321 ~v~~-i---d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 321 NVSN-I---D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHH-h---c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 2221 1 1 2234566777777888889999999999999875 335678999999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 041936 246 GMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYF 325 (402)
Q Consensus 246 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 325 (402)
. +.|-..|-.+.++|.-.+.+.-|+-.|++...... -|...|.+|.++|.+.++.++|++.|.+....|-. +...+.
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~ 470 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALV 470 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHH
Confidence 6 77889999999999999999999999999988632 37889999999999999999999999999987643 668899
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhC----CC-CC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHh
Q 041936 326 TMVYFMCKGGDYETALGFCKESIAK----GW-VP-NFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEA 398 (402)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 398 (402)
.+...|-+.++.++|.+.+++.++. |. .| .....--|...+.+.+++++|.......... .+...--++|++
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-~~e~eeak~LlR 548 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-ETECEEAKALLR 548 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 9999999999999999999887662 32 22 2233334566678888988888877666653 444444444444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-13 Score=123.02 Aligned_cols=287 Identities=12% Similarity=0.006 Sum_probs=220.7
Q ss_pred CCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC--CCCCHHHHHHHHHHHHHcCCHH-HHH
Q 041936 89 NYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHK--LRHSVGAFNALLLALTIAKDYK-EVK 165 (402)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~-~a~ 165 (402)
-+..+|...|..+. .....+..+...+..+|...+++++|.++|+.+.+.. .-.+..+|.+.+..+-+.-.+. -|.
T Consensus 333 y~~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 35678888888844 4455566778888899999999999999999998753 1235677877775554322221 233
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 166 RVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKP-NASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
.+.+.. +-.+.+|..+..+|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|+|...|+....
T Consensus 412 ~Li~~~------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 412 DLIDTD------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHhhC------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 333333 346789999999999999999999999999885 44 678999999999999999999999998875
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 041936 245 YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVY 324 (402)
Q Consensus 245 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 324 (402)
.. +.+-..|--+.-.|.+.++++.|+-.|++..+.+.. +.+....+...+.+.|+.|+|++++++......+ |+..-
T Consensus 484 ~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 VD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred CC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 32 223334445667899999999999999999987544 6667777888889999999999999999886544 34444
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC
Q 041936 325 FTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTK 388 (402)
Q Consensus 325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 388 (402)
-..+..+...++.++|++.++++++. ++.+...+-.+...|.+.|+.+.|+.-|.-+.+..|+
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 44556677789999999999999886 3556677888899999999999999999888876443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-11 Score=104.00 Aligned_cols=284 Identities=12% Similarity=0.082 Sum_probs=147.3
Q ss_pred CCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 041936 89 NYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVF 168 (402)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 168 (402)
|+|.+|+++..+-.+.+..|. -.|...+.+.-+.|+.+.+-+++.+..+..-.++...+-+........|+.+.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 555555555555443322222 2233334444455555555555555554322344444445555555555555555555
Q ss_pred HHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhccCCHHHHHHHHHH
Q 041936 169 IEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNA-------SSFGALVAGFYKEEKYEDVNKVLQM 241 (402)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (402)
+++.+.. +-.........++|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...++.
T Consensus 177 ~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 5543321 223444555555555555555555555555555533332 2455555555554444444444444
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC
Q 041936 242 MERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS-GLSPN 320 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~ 320 (402)
.... ..-+...-.+++.-+.++|+.++|.++..+..+.+..|. -...-.+.+-++.+.-++..+.-.+. +. +
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 3322 133344455555666666666666666666666554444 11222344555555555555544433 22 2
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 321 SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 321 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
+..+..|...|.+.+.+.+|...|+...+. .|+.++|..+..++.+.|+.++|.++.++..-
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 355566666666666666666666655543 56666666666666666666666666666543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.2e-13 Score=118.59 Aligned_cols=287 Identities=14% Similarity=0.076 Sum_probs=222.8
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcC-C-CCCchHHHHHHHHHHHhcCCHHHHHH
Q 041936 54 NPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTR-P-DLQNERFHAHSIILYGQANMTEHAVR 131 (402)
Q Consensus 54 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~A~~ 131 (402)
+.++|+..|...... ..-+......+..+|...+++++|.++|+.+... + ...+.++|.+.+..+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 567788887773322 2223466777888999999999999999999832 2 23456788887754322 22233
Q ss_pred HH-HHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 132 TF-KEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP-DLDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 132 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.+ +.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++.+ .+.| ...+|+.+..-+....++|.|...|+..+.
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAi---Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAI---QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhh---ccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 32 2344443 6778899999999999999999999999986 3456 678999999999999999999999999876
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041936 210 KSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTY 289 (402)
Q Consensus 210 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 289 (402)
.. +-+-..|--++..|.+.++++.|+-.|++..+.+ +.+.+....+...+-+.|+.++|++++++....... |+..-
T Consensus 484 ~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 VD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred CC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 42 1123345557788999999999999999999887 667777888888999999999999999999987544 55554
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 041936 290 SHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN 355 (402)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 355 (402)
-..+..+...+++++|+..++++++. .|+ ...|..+...|-+.|+.+.|+.-|.-+.+.+.+++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 55677778899999999999999985 455 56778888999999999999999988887654433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.7e-13 Score=108.32 Aligned_cols=261 Identities=10% Similarity=0.061 Sum_probs=213.8
Q ss_pred HHHhcCCHHHHHHHHHHhHh---------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 119 LYGQANMTEHAVRTFKEMDE---------HKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
.|...+++..|........+ .+...|-.--+.+..+|.+.|.+.+|..-++.-.++ .|-+.||-.|-+
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLsk 264 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSK 264 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHH
Confidence 34556677777654443322 111223333367889999999999999999988766 788899999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 041936 190 AFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAE 269 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 269 (402)
.|.+..++..|+.++.+-.+. .+.|+....-+.+.+-..++.++|.++|+...+.. +.++....++...|.-.++++.
T Consensus 265 vY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 265 VYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEM 342 (478)
T ss_pred HHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHH
Confidence 999999999999999998886 34455555667788888999999999999998865 5666777777788888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHH
Q 041936 270 AKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN--SSVYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 270 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
|+.+|+++.+.|+. +...|+.+.-+|.-.+++|-++.-|.+....-..|+ ...|-.+.......||+..|.+.|+-.
T Consensus 343 AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 343 ALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred HHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 99999999999987 888999999999999999999999999887644444 456777888888899999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 041936 348 IAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKF 386 (402)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 386 (402)
+..+ ....+.++.|.-.-.+.|++++|..+++......
T Consensus 422 L~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 422 LTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8876 6678899999888899999999999999988763
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-11 Score=113.24 Aligned_cols=311 Identities=11% Similarity=0.073 Sum_probs=241.6
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041936 82 INKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY 161 (402)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (402)
.+.+...|++++|.+++.+++ +..+.....|..|...|-+.|+.+++...+-..-..+ +-|...|..+.....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvI-kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVI-KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHH-HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 344455599999999999999 4467777889999999999999999999888776665 77789999999999999999
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH----HHHHHHHhccCCHHHHHH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSF----GALVAGFYKEEKYEDVNK 237 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~~~~~~~~~~a~~ 237 (402)
+.|.-.|.+.++.. +++...+---+..|-+.|+...|..-|.++.....+.|..-+ -.+++.+...++-+.|.+
T Consensus 224 ~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999997653 556666666778899999999999999999887433333333 334566777888899999
Q ss_pred HHHHHHHC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH--------------------------H
Q 041936 238 VLQMMERY-GMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTY--------------------------S 290 (402)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--------------------------~ 290 (402)
.++..... +-..+...++.++..+.+...++.|......+......+|..-| .
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 88877662 23456677889999999999999999998888762222222111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 041936 291 HFIYGFCKDGNFEEAKKFYRIMSNSG--LSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG 368 (402)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (402)
.++-++.+.+..+....+.....+.. +.-+...|.-+..+|.+.|++.+|..++..+......-+...|-.+.++|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 23344555556666666666666665 3345678899999999999999999999999988556667899999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 369 ASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 369 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
.|..++|.+.|+.+....|.+...--+|
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~L 489 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITL 489 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhH
Confidence 9999999999999999877666544433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5e-11 Score=101.12 Aligned_cols=287 Identities=12% Similarity=0.095 Sum_probs=235.7
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 041936 52 ESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVR 131 (402)
Q Consensus 52 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 131 (402)
.|++..|...........+. ....|-.-..+.-+.|+.+.+..++.+.-+....++.....+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 58999999999876555332 2345666777888889999999999999877667777778888889999999999999
Q ss_pred HHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH-------HHHHHHHHHHHhcCChhHHHHHH
Q 041936 132 TFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL-------DTYNRVIKAFCESSDSSSAYSIL 204 (402)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~ 204 (402)
-++++.+.+ +.+.........+|.+.|++.....++..+.+. ++-.|. .+|..+++-....+..+.-...+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999887 778889999999999999999999999999554 554443 46777888777777777777788
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 041936 205 AEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284 (402)
Q Consensus 205 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 284 (402)
+....+ .+-++..-..++.-+.+.|+.++|.++..+..+.+..|. -...-.+.+-++.+.-++..+........
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~- 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE- 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-
Confidence 877655 455777888888899999999999999999998876665 22233456778888888888877765322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 285 NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
++..+.++...|.+.+.|.+|.+.|+...+ ..|+..+|+.+..++.+.|+..+|.+..++....
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 457888999999999999999999997777 4689999999999999999999999999987654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-11 Score=104.88 Aligned_cols=261 Identities=13% Similarity=0.089 Sum_probs=209.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCC-CCHHHHHHHHHHHHhcC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIK-PDLDTYNRVIKAFCESS 195 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~~ 195 (402)
..++....+.+++++-.+.....|.+-+...-+....+.-...++++|+.+|+++.+..... -|..+|..++..--...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 34566667888888888888888876666666666667778899999999999997653222 25667777765433222
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
. +..+.+-.-.--+--+.|+.++.+-|.-.++.++|...|++..+.+ +.....|+.+.+-|....+...|.+-|+
T Consensus 314 k----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 K----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred H----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 2 2222221111123456789999999999999999999999999987 5667889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 041936 276 EMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN 355 (402)
Q Consensus 276 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 355 (402)
..++.... |-..|-.+.++|.-.+...-|+-+|++..+... -|...|.+|..+|.+.++.++|.+.|+.....| ..+
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 99987433 888999999999999999999999999998632 368999999999999999999999999999877 446
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 356 FTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
...+..|...|-+.++.++|.+.|++..+.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 788999999999999999999999987763
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-10 Score=102.30 Aligned_cols=340 Identities=11% Similarity=0.041 Sum_probs=229.2
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH
Q 041936 39 KDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII 118 (402)
Q Consensus 39 ~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 118 (402)
...+..+..+=++.|.-+....+++.+...-+ -....|-......-..|++..|..++..... ..+.+..++...+.
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~~~p--kae~lwlM~ake~w~agdv~~ar~il~~af~-~~pnseeiwlaavK 626 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQCP--KAEILWLMYAKEKWKAGDVPAARVILDQAFE-ANPNSEEIWLAAVK 626 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHhcCCcHHHHHHHHHHHH-hCCCcHHHHHHHHH
Confidence 33444555555666677777777766654422 2334555555566666777777777777763 34457777777777
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH-HHHHHHHHHHHhcCCh
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL-DTYNRVIKAFCESSDS 197 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~ 197 (402)
.-....+++.|..+|.+.... .|+...|..-+..-.-.+..++|.+++++.++. -|+- ..|-.+...+-+.+++
T Consensus 627 le~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHH
Confidence 777777788888777776653 566677766666666677777788777777655 2332 3455556666667777
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 277 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (402)
+.|.+.|..=.+. ++-.+..|..+...--+.|.+-+|..++++..-.+ +.+...|-..|++-.+.|+.+.|..+..+.
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777766654443 33344556666666667777777888887777666 566777777788777888888887777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH
Q 041936 278 LSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFT 357 (402)
Q Consensus 278 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 357 (402)
.+. ++.+...|..-|-..-+.++-....+.+++. .-|+.....+...+-...++++|.++|.+.++.+ +..-.
T Consensus 780 LQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD 852 (913)
T KOG0495|consen 780 LQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGD 852 (913)
T ss_pred HHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cccch
Confidence 665 3334556666666555555544444433332 3466677777888888889999999999999876 55678
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHH
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNE 395 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 395 (402)
+|..+...+.++|.-+.-.++++....--|.--..|-+
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 88889999999999888888988877654444444443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-11 Score=103.18 Aligned_cols=200 Identities=13% Similarity=0.064 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Confidence 4556666677777777777777777776654 4456666777777777777777777777765432 334556666777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH
Q 041936 190 AFCESSDSSSAYSILAEMDRKSI-KPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCA 268 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 268 (402)
.+...|++++|.+.+++..+... ......+..+..++...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 77777777777777777765421 2234456666777777788888888887777654 334556777777777888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041936 269 EAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 269 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 314 (402)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 888888877765 233455666667777777888888777776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.6e-11 Score=111.50 Aligned_cols=250 Identities=13% Similarity=0.057 Sum_probs=169.2
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc
Q 041936 124 NMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI---------AKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES 194 (402)
Q Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 194 (402)
++.++|...|++..+.. +.+...|..+..++.. .+++++|...+++..+.. +-+...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence 34678889999888765 4455666666655442 234788898888886542 44667777888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 041936 195 SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALL 274 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (402)
|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+... .+...+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P-~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP-TRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999888864 33566788888888899999999999998888652 22233334444566678899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhC-CC
Q 041936 275 DEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAK-GW 352 (402)
Q Consensus 275 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~ 352 (402)
+++.+...+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|+..| +++...++.+.+. ..
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 88876532223445677778888899999999998887654 333 334455555667666 4777777766553 11
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 353 VPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 353 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
.+....+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2222222 33345556676666666 666653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-11 Score=100.90 Aligned_cols=201 Identities=10% Similarity=0.047 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 041936 144 SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALV 223 (402)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (402)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 34556666777777777777777777765432 3345566667777777777777777777776653 33455666667
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 041936 224 AGFYKEEKYEDVNKVLQMMERYGM-KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNF 302 (402)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 302 (402)
..+...|++++|.+.+++...... +.....+..+...+...|++++|...+++....... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 777777777777777777765321 223345555666677777777777777777665322 345666677777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 303 EEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 303 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
++|...+++..+. ...+...+..+...+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777777665 223445555666666677777777777666544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-10 Score=104.25 Aligned_cols=294 Identities=15% Similarity=0.126 Sum_probs=192.6
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc--
Q 041936 81 AINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIA-- 158 (402)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 158 (402)
....+...|++++|++.++.-. ........+.......+.+.|+.++|..+|..+.+.+ +.+..-|..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~-~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNE-KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhh-hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 3445677888888888887754 3344445667777778888888888888888888876 55555556666555322
Q ss_pred ---CCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHH
Q 041936 159 ---KDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS-SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYED 234 (402)
Q Consensus 159 ---~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 234 (402)
.+.+...++|+++... -|.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|....+.+-
T Consensus 88 ~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 2467777788877443 24333333332222222223 2345556667777754 356666666665555555
Q ss_pred HHHHHHHHHHC----C----------CCCChh--hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 041936 235 VNKVLQMMERY----G----------MKSGVS--MYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPN-SVTYSHFIYGFC 297 (402)
Q Consensus 235 a~~~~~~~~~~----~----------~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 297 (402)
..+++...... + -+|+.. ++..+.+.|-..|++++|++++++.++. .|+ +..|..-.+.+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 55555554321 1 123332 3455567777888888888888888876 444 567777788888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHHcC
Q 041936 298 KDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTM--------KSLVTGLAGA 369 (402)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~ 369 (402)
+.|++++|.+.++........ |...-+..+..+.+.|++++|.+++....+.+..|....+ .-...+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876543 6677777778888888888888888888766543333222 3446677888
Q ss_pred CChHHHHHHHHHHHhc
Q 041936 370 SKVSEAKELIGLVKEK 385 (402)
Q Consensus 370 g~~~~a~~~~~~~~~~ 385 (402)
|++..|++.|..+.+.
T Consensus 319 ~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKH 334 (517)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 8888888877776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-09 Score=95.12 Aligned_cols=349 Identities=11% Similarity=0.015 Sum_probs=276.0
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHh---hcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCC--CCchHHHH
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAA---ALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPD--LQNERFHA 114 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 114 (402)
..+-.+.++=..+|+.+..-.++... ....|+..+...|-.=...|-..|..-.+..+....+.-+. .....++.
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~ 520 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL 520 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence 33444445555666666666666443 24457777888888888888888888888888877763332 22345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES 194 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 194 (402)
.-...|.+.+.++-|..+|...++-- +.+...|......=-..|..++...+|++.... ++-....|-.....+-..
T Consensus 521 ~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKA 597 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhc
Confidence 77788889999999999999888764 566778888777777788999999999988654 345556677777788889
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 041936 195 SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALL 274 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (402)
|++..|..++....+.. +.+...|...+........++.|..+|.+.... .|+...|..-+...--.++.++|.+++
T Consensus 598 gdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred CCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 99999999999998874 447788999999999999999999999988875 478888887777777789999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 041936 275 DEMLSKGMKPN-SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWV 353 (402)
Q Consensus 275 ~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 353 (402)
++..+. -|+ ...|..+.+.+.+.++.+.|...|..-.+. +.-....|..+.+.=-+.|.+-.|..++++..-++ +
T Consensus 675 Ee~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-P 750 (913)
T KOG0495|consen 675 EEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-P 750 (913)
T ss_pred HHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-C
Confidence 998876 455 457888888999999999999988876654 32345677777777788899999999999998776 6
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHh
Q 041936 354 PNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEA 398 (402)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 398 (402)
-+...|-..|+.-.+.|+.+.|..+..+..+..|.+...|..-|-
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~ 795 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIW 795 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHH
Confidence 788999999999999999999999999999999999888876553
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.8e-11 Score=109.92 Aligned_cols=278 Identities=15% Similarity=0.113 Sum_probs=173.6
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC---CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCC
Q 041936 108 QNERFHAHSIILYGQANMTEHAVRTFKEMDEH---KLRHSV------GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIK 178 (402)
Q Consensus 108 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 178 (402)
+...+.+.+...+...|++.+|...|+..... ...++. .+-..+..++-..++.+.|.+.|..+.+. -
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---h 526 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---H 526 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---C
Confidence 44444455555555555555555555544332 011111 11112333344444555555555555443 2
Q ss_pred CCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhHHH
Q 041936 179 PDLDT-YNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG-MKSGVSMYNV 256 (402)
Q Consensus 179 p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 256 (402)
|.-+. |--+..+....+...+|..++....... ..++..++.+...+.+..++..|.+-|....+.- ..+|+.+.-.
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 22221 2222222223355666666666665542 3455666666667777777777777666555432 1245555555
Q ss_pred HHHHHHc------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 041936 257 RIHSLCK------------LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVY 324 (402)
Q Consensus 257 ll~~~~~------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 324 (402)
|.+.|.+ .+..++|+++|.+....... |...-|-+.-.++..|++.+|..+|....+... -...+|
T Consensus 606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~ 683 (1018)
T KOG2002|consen 606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVW 683 (1018)
T ss_pred hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCcee
Confidence 5555443 24567888888888876433 666677788888899999999999999998744 245678
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChh
Q 041936 325 FTMVYFMCKGGDYETALGFCKESIAK-GWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVD 391 (402)
Q Consensus 325 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 391 (402)
..+..+|...|++..|.++|+...+. .-.-++.+...|.+++.+.|.+.+|.+.+.......|.|..
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 88999999999999999999887765 44567888899999999999999999998888877555543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-10 Score=105.03 Aligned_cols=338 Identities=12% Similarity=0.074 Sum_probs=218.9
Q ss_pred CCChhHHHHHHHHh-hcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHH---HHhcCCHH
Q 041936 52 ESNPEKILEICRAA-ALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIIL---YGQANMTE 127 (402)
Q Consensus 52 ~~~~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~ 127 (402)
.+++..|+.+|+.+ ...|...||+. -.+..++.+.|+.+.|..-|..... -.|.+...+..|... +.....+.
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralq-Ldp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQ-LDPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHh-cChhhHHHHHHHHHHHHHccchHHHH
Confidence 45778888888775 35556666653 2333556777888888888877763 233444444333322 22334456
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041936 128 HAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIK-PDLDTYNRVIKAFCESSDSSSAYSILAE 206 (402)
Q Consensus 128 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~ 206 (402)
.+..++...-..+ +-++...+.|.+.|.-.|+++.++.+...+.+..... .-...|..+.++|...|++++|..+|.+
T Consensus 254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 6777777666555 5677788888888888899999888888876542111 1234578888889999999999999888
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC----CHHHHHHHHHHHHHCCC
Q 041936 207 MDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLR----KCAEAKALLDEMLSKGM 282 (402)
Q Consensus 207 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~ 282 (402)
..+..-.--...+.-+.+.+.+.|+++.+...|+.+.+.. +.+..+...+...|...+ ..++|..++.+..+.-
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 8776322113344567788888999999998888887764 445556666666666554 4566677776666653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC---CCCCC
Q 041936 283 KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMS----NSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK---GWVPN 355 (402)
Q Consensus 283 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~ 355 (402)
..|...|..+...+...+-+ .++.+|.... ..+..+.....|.+.......|++.+|...|+..... ...++
T Consensus 411 ~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 23666777776666554433 3366665443 3455567778888888888888888888888877654 11222
Q ss_pred H------HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 356 F------TTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 356 ~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
. .+--.+...+-..++++.|.+.|..+.+.+|.=+..|--+
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl 536 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRL 536 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh
Confidence 2 1222344555566778888888888777666555554433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.1e-11 Score=112.12 Aligned_cols=235 Identities=12% Similarity=0.084 Sum_probs=171.6
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHH---------hcCChhHHHHHHHH
Q 041936 142 RHSVGAFNALLLALTI-----AKDYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFC---------ESSDSSSAYSILAE 206 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~---------~~~~~~~a~~~~~~ 206 (402)
..+...|...+.+... .++.++|...|++..+. .|+ ...|..+..++. ..+++++|...+++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 4566666666655322 24689999999998754 444 455666655544 23457899999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 041936 207 MDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNS 286 (402)
Q Consensus 207 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 286 (402)
..+.. +-+...+..+..++...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +.
T Consensus 330 Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 330 ATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 99874 4467788888888999999999999999999876 455677888889999999999999999999987433 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041936 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGL 366 (402)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (402)
..+..++..+...|++++|...+++.......-+...+..+..++...|+.++|...++++.... +.+....+.+...|
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEY 485 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Confidence 23334455566789999999999998765322235556777888889999999999998876642 23344455566667
Q ss_pred HcCCChHHHHHHHHHHHhc
Q 041936 367 AGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 367 ~~~g~~~~a~~~~~~~~~~ 385 (402)
...| +.|...++.+.+.
T Consensus 486 ~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 486 CQNS--ERALPTIREFLES 502 (553)
T ss_pred hccH--HHHHHHHHHHHHH
Confidence 7777 4777777776664
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-10 Score=100.78 Aligned_cols=276 Identities=12% Similarity=0.050 Sum_probs=205.6
Q ss_pred HHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHh--cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041936 84 KLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQ--ANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY 161 (402)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (402)
.+.+.|+++.|.++++-+.+..........+.+...+.- ..++..|.++-+.....+ .-+......-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 467889999999998888755444444444444433333 346777777777665443 33343333333445567999
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHH---HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNR---VIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKV 238 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (402)
++|.+.|.+.... |...-.. +.-.+-..|+.++|++.|-++... +.-+..+...+.+.|-...+..+|+++
T Consensus 507 dka~~~ykeal~n-----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 507 DKAAEFYKEALNN-----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred HHHHHHHHHHHcC-----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 9999999988643 3322222 223466789999999999877543 334677888888999999999999998
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041936 239 LQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS 318 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 318 (402)
+.+.... ++.|......|...|-+.|+-..|.+.+-+-..- ++.+..+..+|...|....-+++++.+|++..- +.
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 8766543 4677888999999999999999998877655443 445788999999999999999999999998765 68
Q ss_pred CCHHhHHHHHHHH-HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 041936 319 PNSSVYFTMVYFM-CKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASK 371 (402)
Q Consensus 319 ~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (402)
|+..-|..++..| .+.|++++|+++++...++ ++.|..+...|++.+...|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 9999999888766 5689999999999988764 68899999999999988775
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.7e-10 Score=97.56 Aligned_cols=323 Identities=13% Similarity=0.070 Sum_probs=199.3
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 041936 51 SESNPEKILEICRAAALTPESHLD-RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHA 129 (402)
Q Consensus 51 ~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 129 (402)
..+.++.|++++.++.. ..|| +..|+....+|...|+|+++.+--.+..+- .+.-...+..-..++-..|++++|
T Consensus 127 ~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl-~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL-NPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred hcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHhhccHHHH
Confidence 45688999999999864 3455 788999999999999999998887776632 222233344445566677777766
Q ss_pred HHH----------------------HHH---------hHhCC--CCCCHHHHHHHHHHHH--------------------
Q 041936 130 VRT----------------------FKE---------MDEHK--LRHSVGAFNALLLALT-------------------- 156 (402)
Q Consensus 130 ~~~----------------------~~~---------~~~~~--~~~~~~~~~~l~~~~~-------------------- 156 (402)
+.- ++. +.+.+ +-|+.....+....+.
T Consensus 203 l~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~ 282 (606)
T KOG0547|consen 203 LFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAE 282 (606)
T ss_pred HHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHH
Confidence 431 111 11011 1133222222222111
Q ss_pred -------------------------------------------------------HcCCHHHHHHHHHHchhhcCCCCCH
Q 041936 157 -------------------------------------------------------IAKDYKEVKRVFIEFPKTYGIKPDL 181 (402)
Q Consensus 157 -------------------------------------------------------~~~~~~~a~~~~~~~~~~~~~~p~~ 181 (402)
-.|+.-.|.+-|+..++-. +.+.
T Consensus 283 ~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~--~~~~ 360 (606)
T KOG0547|consen 283 ALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD--PAFN 360 (606)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--cccc
Confidence 1123333333333333211 1111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 041936 182 DTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSL 261 (402)
Q Consensus 182 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (402)
..|--+..+|....+.++..+.|.+..+.+ +-|+.+|..-.+.+.-.+++++|..=|++.+... +-+...|-.+.-+.
T Consensus 361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 361 SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCAL 438 (606)
T ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHH
Confidence 114445556666666666677776666654 3355666666666666677777777777776654 34455566666666
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHhH--HHHHHHHHcc
Q 041936 262 CKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS-----PNSSVY--FTMVYFMCKG 334 (402)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~--~~l~~~~~~~ 334 (402)
.+.+.++++...|++.++. ++-.+..|+.....+...++++.|.+.|+..++.... .+...+ ..++.. .=.
T Consensus 439 Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk 516 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chh
Confidence 6777888888888888776 3335677888888888888888888888887764211 122111 122211 123
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 335 GDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
+++..|..++.+.++.+ +-....|..|...-.+.|+.++|+++|++...
T Consensus 517 ~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 78888888888888775 44667788888888999999999999987654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-11 Score=112.52 Aligned_cols=247 Identities=15% Similarity=0.138 Sum_probs=167.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHH
Q 041936 70 ESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFN 149 (402)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 149 (402)
|+.|++.+|..+|..|+..|+.+.|- +|.-|.....+.+...++.++......++.+.+. .|...+|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 78899999999999999999999998 9999998888999999999999999999877664 68889999
Q ss_pred HHHHHHHHcCCHHH---HHHHHHHchhh---cCCCCCHHHH--------------HHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 150 ALLLALTIAKDYKE---VKRVFIEFPKT---YGIKPDLDTY--------------NRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 150 ~l~~~~~~~~~~~~---a~~~~~~~~~~---~~~~p~~~~~--------------~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.|..+|...||+.. +.+.+..+... .|+-.....+ ...+....-.|-++.+.+++..+..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99999999998755 33322222111 1111111111 1122222233344444444433322
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041936 210 KSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTY 289 (402)
Q Consensus 210 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 289 (402)
.... . ++...++-+..... -.+++........-.|++.+|.+++.+-...|+++.|..++.+|.+.|.+.+.+-|
T Consensus 168 sa~~-~--p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 168 SAWN-A--PFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cccc-c--hHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 2100 0 11112333333222 23333332222111488888989988888889999999999999999888888877
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 041936 290 SHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGD 336 (402)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 336 (402)
..++-+ .++...++.++.-|.+.|+.|+..|+...+..+.+.|.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777755 77888888888888888999999888888877777554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-10 Score=94.85 Aligned_cols=233 Identities=11% Similarity=0.086 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
..-..+..+|.+.|-+.+|.+-|+.-.+. .|-+.||-.|-.+|.+..+++.|+.+|.+-.+. .+-|+....-+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 44456788999999999999999998776 678889999999999999999999999988654 24444445567788
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHH
Q 041936 191 FCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEA 270 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 270 (402)
+-..++.++|.++|+...+.. +.+++....+...|.-.++++-|+..|+++.+.|+ .+...|+.+.-+|.-.++++-+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhh
Confidence 888999999999999998874 55777888888889999999999999999999994 6677888888899999999999
Q ss_pred HHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 041936 271 KALLDEMLSKGMKPNS--VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESI 348 (402)
Q Consensus 271 ~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 348 (402)
+.-|++.......|+. ..|-.+....+..||+..|.+.|+.....+.. +...++.|...-.+.|++++|..++....
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999998876555553 46777888888999999999999998876533 57889999888899999999999999887
Q ss_pred hC
Q 041936 349 AK 350 (402)
Q Consensus 349 ~~ 350 (402)
..
T Consensus 457 s~ 458 (478)
T KOG1129|consen 457 SV 458 (478)
T ss_pred hh
Confidence 64
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.2e-10 Score=95.00 Aligned_cols=291 Identities=13% Similarity=0.141 Sum_probs=211.5
Q ss_pred CCCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc-CCcchHHHHHHHhhcCCCCCchHHHH
Q 041936 36 LTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEA-NYFNGISQYLEELKTRPDLQNERFHA 114 (402)
Q Consensus 36 ~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~ 114 (402)
+.-....+.+..++ .+|+.+.|.++++......+...+...-+.-.-.+.+. .++..|.++-+... ....-+.....
T Consensus 417 la~dlei~ka~~~l-k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al-n~dryn~~a~~ 494 (840)
T KOG2003|consen 417 LAIDLEINKAGELL-KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL-NIDRYNAAALT 494 (840)
T ss_pred hhhhhhhhHHHHHH-hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh-cccccCHHHhh
Confidence 33334445555544 47899999999998887765544444444433334444 48888888877766 22222332222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES 194 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 194 (402)
.-.......|++++|.+.|++.+..+-.-....|| +.-.+-..|++++|++.|-++..- +.-+......+...|--.
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i--l~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI--LLNNAEVLVQIANIYELL 571 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHh
Confidence 22233446799999999999988654222233333 333567889999999999877321 134667777888889999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 041936 195 SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALL 274 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (402)
.+...|++++.+.... ++.|+.+.+.|...|-+.|+-.+|.+.+-.--.. ++-+..+...|...|....-+++++.+|
T Consensus 572 ed~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred hCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999887665 6778899999999999999999998876554332 4667888888888899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 041936 275 DEMLSKGMKPNSVTYSHFIYGFC-KDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGD 336 (402)
Q Consensus 275 ~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 336 (402)
++..- +.|+..-|..++..|. +.|++.+|+++|+....+ +.-|......|++.+...|-
T Consensus 650 ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 650 EKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 98764 4899999998887665 589999999999999876 55578888889988888774
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-09 Score=97.30 Aligned_cols=291 Identities=16% Similarity=0.169 Sum_probs=203.1
Q ss_pred HHHhcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhc--
Q 041936 47 TLLKSESNPEKILEICRAAALTPESHLD-RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQA-- 123 (402)
Q Consensus 47 ~~l~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 123 (402)
.++...|++++|++.+..... ..+| ...+......+.+.|+.++|..++..+..+ .|.+...|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~---~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK---QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh---hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHhhhcc
Confidence 567888999999999976542 3344 445667788899999999999999999954 567777787777776333
Q ss_pred ---CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhH
Q 041936 124 ---NMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYK-EVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSS 199 (402)
Q Consensus 124 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 199 (402)
.+.+...++|+++.+.- |.......+.-.+.....+. .+...+..+.++ |+|+ +|+.+-..|......+-
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHcChhHHHH
Confidence 35778888999887653 44333333322222222333 344444555433 5543 56677777776666666
Q ss_pred HHHHHHHHHhC----C----------CCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 041936 200 AYSILAEMDRK----S----------IKPNA--SSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCK 263 (402)
Q Consensus 200 a~~~~~~~~~~----g----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 263 (402)
..+++...... + -+|+. .++.-+...|...|++++|++.+++.++.. +..+..|..-.+.+-+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 66666665432 1 12333 244566777889999999999999999875 3347788888999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh------H--HHHHHHHHccC
Q 041936 264 LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSV------Y--FTMVYFMCKGG 335 (402)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------~--~~l~~~~~~~g 335 (402)
.|++.+|.+.++........ |-..=+..+..+.+.|++++|.+++..+...+..|-... | .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887443 666666778888899999999999999988765433222 1 34567888999
Q ss_pred ChHHHHHHHHHHHh
Q 041936 336 DYETALGFCKESIA 349 (402)
Q Consensus 336 ~~~~a~~~~~~~~~ 349 (402)
++..|++.|....+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 98888877665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-12 Score=79.44 Aligned_cols=49 Identities=31% Similarity=0.730 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 041936 179 PDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFY 227 (402)
Q Consensus 179 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 227 (402)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-08 Score=87.59 Aligned_cols=333 Identities=11% Similarity=0.055 Sum_probs=211.0
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 041936 51 SESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAV 130 (402)
Q Consensus 51 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 130 (402)
++++..+|..+|+.+.... ..+...|-.-+..-.+...+..|..+++..... .|.-..++...+.+=-..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHH
Confidence 3456677888888776543 234557777788888888999999999988843 3444456666676677789999999
Q ss_pred HHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 131 RTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
++|+...+- .|+...|++.|..=.+.+.++.|..+|+..+ -+.|++.+|--..+.=-++|++..+..+|+...+.
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999987765 7999999999998888888888888888875 33577777666555555555555555444443321
Q ss_pred -C------------------------------------------------------------------------------
Q 041936 211 -S------------------------------------------------------------------------------ 211 (402)
Q Consensus 211 -g------------------------------------------------------------------------------ 211 (402)
|
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 0
Q ss_pred -CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh---------------------------------------
Q 041936 212 -IKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGV--------------------------------------- 251 (402)
Q Consensus 212 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------------------------- 251 (402)
-+.|-.+|--.+..-...|+.+...++|++.+.. ++|-.
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 0222233333444444556666666666665543 23311
Q ss_pred -----hhHHH----HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 041936 252 -----SMYNV----RIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSS 322 (402)
Q Consensus 252 -----~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 322 (402)
.||.. ....-.++.++..|.+++...+ |..|-..+|...|..-.+.+++|.+.+++++.++-+.. |..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~ 472 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCY 472 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhH
Confidence 11111 1111112233334444433332 34556666666666667777888888888888876433 566
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 323 VYFTMVYFMCKGGDYETALGFCKESIAKG-WVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
+|......=...|+.+.|..+|+-+++.. +......|...|..-...|.++.|..+++.+.+. .+...+|-++
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r-t~h~kvWisF 546 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR-TQHVKVWISF 546 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh-cccchHHHhH
Confidence 77777776677788888888888877752 2233455666666667788888888888888775 2223355443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=78.91 Aligned_cols=47 Identities=38% Similarity=0.771 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 285 NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-09 Score=93.24 Aligned_cols=276 Identities=9% Similarity=-0.024 Sum_probs=216.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI 188 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 188 (402)
+..+...-..-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++++.. |-...+|-.+.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHH
Confidence 33445555666778899999999999998876 7888888888889999999888877777776543 55678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH
Q 041936 189 KAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCA 268 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 268 (402)
--|.-.|+..+|.+.|.+..... +.=...|-.....|.-.|.-++|+..|...-+.- +-..--+--+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 88888999999999999876542 1124578888999999999999999998776531 111111223344577889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-C-CCHHhHHHHHHHHHccCChHHHHH
Q 041936 269 EAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GL-S-PNSSVYFTMVYFMCKGGDYETALG 342 (402)
Q Consensus 269 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~-~~~~~~~~l~~~~~~~g~~~~a~~ 342 (402)
.|.+.|....... +-|+...+-+.-.....+.+.+|..+|+..... +- . .-..+++.|..+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999988763 336777888877777889999999999987732 11 1 134568899999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChh
Q 041936 343 FCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVD 391 (402)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 391 (402)
.+++.+... +.+..++.++.-.|...|+++.|.+.|.+..-..|.|..
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 999998875 778999999999999999999999999998886555543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5e-08 Score=83.53 Aligned_cols=306 Identities=12% Similarity=0.027 Sum_probs=212.3
Q ss_pred HHHHHHHHhc--CCcchHHHHHHHhh-cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 79 SIAINKLSEA--NYFNGISQYLEELK-TRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 79 ~~l~~~~~~~--~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
..-+.++++. ++-..+...+-.+. ....+.+......+..++...|+.++|+..|++....+ +-+........-.+
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLL 276 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHH
Confidence 3334444433 33344444443333 24456677888888888888888888888888876544 33333444444556
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDV 235 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 235 (402)
.+.|+.+....+...+.... +.+...|-.-.......+++..|+.+-++.++.. +-+...|-.-...+...+++++|
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHH
Confidence 67788877777766664221 2344445555555666778888888888887763 33455666666778888999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHH
Q 041936 236 NKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFI-YGFC-KDGNFEEAKKFYRIMS 313 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~m~ 313 (402)
.-.|+..+... +-+..+|.-++.+|...|++.+|...-+..... +..+..+...+. ..|. ...--++|.++++.-.
T Consensus 354 ~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 354 VIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 88888887654 457788999999999999999888777766554 223455555442 2222 2233467888888776
Q ss_pred hCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhh
Q 041936 314 NSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDT 392 (402)
Q Consensus 314 ~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 392 (402)
. +.|+ ....+.+...|...|..+.+..++++.... .||....+.|.+.+...+.+.+|.+.|.......|.|..+
T Consensus 432 ~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 432 K--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred c--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 6 3455 345677788889999999999999998875 7899999999999999999999999999998877777665
Q ss_pred HH
Q 041936 393 WN 394 (402)
Q Consensus 393 ~~ 394 (402)
..
T Consensus 508 l~ 509 (564)
T KOG1174|consen 508 LR 509 (564)
T ss_pred HH
Confidence 43
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-09 Score=91.68 Aligned_cols=229 Identities=12% Similarity=0.079 Sum_probs=155.1
Q ss_pred hcCCHHHHHHHHHHhHhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChh
Q 041936 122 QANMTEHAVRTFKEMDEHK-LRH--SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSS 198 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 198 (402)
..+..+.++.-+.++.... ..| ....|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|+++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHH
Confidence 3467788888888887543 122 24567778888899999999999998886542 445778899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 199 SAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 199 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
+|.+.|++..+.. +-+..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+..
T Consensus 116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999988753 2346678888888888999999999999888764 433322222333455678899999997655
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CC-CHHhHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 041936 279 SKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS---GL--SP-NSSVYFTMVYFMCKGGDYETALGFCKESIAKGW 352 (402)
Q Consensus 279 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 352 (402)
... .|+...+ .+. ....|+...+ ..+..+.+. .. .| ....|..+...+.+.|++++|...|++..+.+
T Consensus 193 ~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~- 266 (296)
T PRK11189 193 EKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN- 266 (296)
T ss_pred hhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 432 3332222 222 2334555443 344444432 11 11 23578888888889999999999999888765
Q ss_pred CCCHHHHHH
Q 041936 353 VPNFTTMKS 361 (402)
Q Consensus 353 ~~~~~~~~~ 361 (402)
+|+..-+..
T Consensus 267 ~~~~~e~~~ 275 (296)
T PRK11189 267 VYNFVEHRY 275 (296)
T ss_pred CchHHHHHH
Confidence 445444433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.2e-09 Score=95.64 Aligned_cols=245 Identities=15% Similarity=0.121 Sum_probs=179.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh----cCC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 041936 140 KLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT----YGI-KPDLD-TYNRVIKAFCESSDSSSAYSILAEMDRK--- 210 (402)
Q Consensus 140 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 210 (402)
+.+.-..+...+...|...|++++|+.+++...+. .|. .|... ..+.+...|...+++++|..+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33344456667899999999999999999887543 232 23333 3445778889999999999999988653
Q ss_pred --C--CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH---C--C-CCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 041936 211 --S--IKPNASSFGALVAGFYKEEKYEDVNKVLQMMER---Y--G-MKSGV-SMYNVRIHSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 211 --g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--~-~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (402)
| .+.-..+++.|..+|.+.|++++|...+++..+ . + ..|.+ ..++.+...++..+++++|..+++...+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2 122245677888889999999998888876643 1 1 12333 3356677788899999999999987654
Q ss_pred C---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-CHHhHHHHHHHHHccCChHHHHHHHH
Q 041936 280 K---GMKPN----SVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GL--SP-NSSVYFTMVYFMCKGGDYETALGFCK 345 (402)
Q Consensus 280 ~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 345 (402)
. -+.++ ..+++.+...|...|++++|.+++++.+.. +- .+ ....++.+...|.+.+++++|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 2 12222 357999999999999999999999988754 11 12 24567888899999999998988887
Q ss_pred HHHhC----C--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 346 ESIAK----G--WVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 346 ~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
+...- | .+-...+|..|...|...|+++.|.++.+.+..
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 75432 2 233457889999999999999999999988764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-08 Score=88.02 Aligned_cols=303 Identities=13% Similarity=0.031 Sum_probs=174.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALT 156 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (402)
.+....+-|.+.|.+++|++++.+.+.. .+..+.+|.....+|...|+++++.+.-.+.++.+ +.-+..+..-.+++-
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l-~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL-CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE 194 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc-CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence 3455566788999999999999999843 22227789999999999999999999888877764 333445555566666
Q ss_pred HcCCHHHHHH----------------------HHHHc--------hh--hcCCCCCHHHHHHHHHHHHh-----------
Q 041936 157 IAKDYKEVKR----------------------VFIEF--------PK--TYGIKPDLDTYNRVIKAFCE----------- 193 (402)
Q Consensus 157 ~~~~~~~a~~----------------------~~~~~--------~~--~~~~~p~~~~~~~li~~~~~----------- 193 (402)
..|++++|+. ++++. .+ +..+-|+.....+....+..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 6666655432 22111 01 11223443333332222110
Q ss_pred --------------cC---ChhHHHHHHHHHHhC---CCCCC---------HhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 194 --------------SS---DSSSAYSILAEMDRK---SIKPN---------ASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 194 --------------~~---~~~~a~~~~~~~~~~---g~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
.+ .+..|.+.+.+-... ....+ ..+...-...+.-.|+.-.|..-|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 00 111122211111100 00111 11222222233445677777777777766
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 041936 245 YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVY 324 (402)
Q Consensus 245 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 324 (402)
... .+...|--+..+|...++.++....|.+....+.. +..+|..-.+.+.-.+++++|..=|++.+..... +...|
T Consensus 355 l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~ 431 (606)
T KOG0547|consen 355 LDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAY 431 (606)
T ss_pred cCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHH
Confidence 542 22222556666677777777777777777665433 4555666666666667777777777766664221 34555
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 325 FTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
..+..+..+.+++++++..|++.+++ ++..++.|+.....+...++++.|.+.|+...+.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 55555666666777777777776664 4556667777777777777777777777766654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.5e-09 Score=82.53 Aligned_cols=194 Identities=12% Similarity=0.029 Sum_probs=90.0
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC
Q 041936 81 AINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKD 160 (402)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (402)
+.-.|.+.|++..|.+-+++.+ ..++.....+..+...|.+.|+.+.|.+.|++..+.. +-+-.+.|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL-~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKAL-EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 3334445555555555555544 2234444444444445555555555555555544443 3344444555555555555
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQ 240 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (402)
+++|...|++.........-..+|..+.-+..+.|+.+.|...|++.++.. +-...+...+.....+.|++..|...++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555544332222233444445445555555555555555544432 1123334444444445555555555554
Q ss_pred HHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 241 MMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 241 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
.....+. ++..+.-..|+.--..|+.+.+.+.=..+.
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444442 444444444444444444444444433333
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-07 Score=85.74 Aligned_cols=304 Identities=10% Similarity=0.008 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhh-cCCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELK-TRPDLQN-ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
..|..+...+...|+.+.+.+.+.... ......+ ..........+...|++++|.+.+++..+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 455666666667788888766666554 2222222 2222233445778899999999999988764 555555542 22
Q ss_pred HHH----HcCCHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 041936 154 ALT----IAKDYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK 228 (402)
Q Consensus 154 ~~~----~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 228 (402)
.+. ..+..+.+.+.+.... ...|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA---PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC---cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 222 2455555666655421 22333 3445566778889999999999999999874 4456778888999999
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCh--hhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCC
Q 041936 229 EEKYEDVNKVLQMMERYGM-KSGV--SMYNVRIHSLCKLRKCAEAKALLDEMLSKGM-KPNSVTY-S--HFIYGFCKDGN 301 (402)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~~~ 301 (402)
.|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999998877532 1222 3455788889999999999999999865422 1122111 1 22333334444
Q ss_pred HHHHHHH--HHHHHhCCC--CCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCC------C--CHHHHHHHHHHHHcC
Q 041936 302 FEEAKKF--YRIMSNSGL--SPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWV------P--NFTTMKSLVTGLAGA 369 (402)
Q Consensus 302 ~~~a~~~--~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~ 369 (402)
.+.+..+ +........ ............++...|+.++|..+++.+...... . .........-++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333332 221111110 111122235667788899999999999988764211 0 112222223345689
Q ss_pred CChHHHHHHHHHHHhc
Q 041936 370 SKVSEAKELIGLVKEK 385 (402)
Q Consensus 370 g~~~~a~~~~~~~~~~ 385 (402)
|+.++|.+.+......
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-09 Score=96.37 Aligned_cols=245 Identities=17% Similarity=0.217 Sum_probs=172.4
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC-----C-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHchhh----
Q 041936 106 DLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH-----K-LRHSVG-AFNALLLALTIAKDYKEVKRVFIEFPKT---- 174 (402)
Q Consensus 106 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 174 (402)
.|.-..+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3444455666788899999999999999887653 2 123332 3445777888899999999999888542
Q ss_pred cCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCC-CCH-hhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 175 YGI--KPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK-----SIK-PNA-SSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 175 ~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----g~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
.|- +.-..+++.|...|.+.|++++|...++...+. |.. |.. ..++.+...|...+++++|..+++...+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 111 122356777888899999999999998876542 211 122 23566777788889999999998866441
Q ss_pred ---CCCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041936 246 ---GMKSG----VSMYNVRIHSLCKLRKCAEAKALLDEMLSK-----G-MKPN-SVTYSHFIYGFCKDGNFEEAKKFYRI 311 (402)
Q Consensus 246 ---~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 311 (402)
-+.++ ..+++.+...|...|++++|.+++++.+.. | ..+. ...++.+...|.+.+++++|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 12222 457888889999999999999999987653 1 1222 34677788888888899989888887
Q ss_pred HHh----CCCC-CC-HHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 312 MSN----SGLS-PN-SSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 312 m~~----~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
... .|.. |+ ..+|..|...|...|+++.|.++.+.....
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 542 2322 23 467888999999999999999988877664
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.7e-09 Score=89.50 Aligned_cols=219 Identities=14% Similarity=0.085 Sum_probs=133.3
Q ss_pred cCCcchHHHHHHHhhcCCC---CCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 041936 88 ANYFNGISQYLEELKTRPD---LQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEV 164 (402)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 164 (402)
.+..+.++.-+.++..... ......|......|...|+.++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3455666666666663221 1123456666667778888888888888877765 56677788888888888888888
Q ss_pred HHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 165 KRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 165 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
...|+...+.. +-+..+|..+...+...|++++|.+.|+...+.. |+..........+...++.++|...|.+...
T Consensus 118 ~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888776431 2245667777777777888888888888777653 3322222222233456678888888865543
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041936 245 YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK---GM--KP-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG 316 (402)
Q Consensus 245 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 316 (402)
.. .++...+ .+.. ...|+...+ +.+..+.+. .+ .| ....|..+...+.+.|++++|...|++..+.+
T Consensus 194 ~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 32 2322211 2222 234444433 244444322 11 11 23467777788888888888888888887654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-08 Score=90.34 Aligned_cols=285 Identities=13% Similarity=0.076 Sum_probs=208.7
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+........+.+-..+++.+..++.+.+. ..+++....+..-|..+...|+..+-..+=.++.+.- |....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~ll-e~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELL-EKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHH-hhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 44556666677777888999999888888 3456666666666778888888888777777777664 666778888887
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKY 232 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 232 (402)
-|.-.|...+|.+.|.+.. .+.|. ...|-.....|+-.|..+.|+..|...-+. ++-...-+--+.--|.+.+..
T Consensus 321 YYl~i~k~seARry~SKat---~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKAT---TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHh---hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 8888889999999988764 22333 346788888888888889988888776554 111222233445567788889
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC--CC---CC-CHHHHHHHHHHHHhcCCHHHHH
Q 041936 233 EDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK--GM---KP-NSVTYSHFIYGFCKDGNFEEAK 306 (402)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~---~p-~~~~~~~l~~~~~~~~~~~~a~ 306 (402)
+.|.+.|.+..... +-|+...+-+.-.....+.+.+|..+|+..... .+ .+ -..+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999998887654 566777777777777778888998888877632 01 11 2346788888899999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 041936 307 KFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG 368 (402)
Q Consensus 307 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (402)
..++...... .-+..++.++.-.|...|+++.|.+.|.+.+.. .|+..+...++..+..
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 9999888763 337788888888888899999999999888754 6777666666665443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-07 Score=82.40 Aligned_cols=310 Identities=11% Similarity=0.098 Sum_probs=209.3
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+...|..-.+.-...+++..|..+|+..+ ..+..+..++...+.+=.+...+..|..+++.....= |.-...|...+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERAL-dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERAL-DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 33445555555666788999999999998 4456777888888888899999999999999987652 333356777777
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYE 233 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 233 (402)
+=-..|++..|.++|+... ...|+...|.+.|+.=.+-+.++.|..+|++..-. .|+..+|--....-.+.|...
T Consensus 150 mEE~LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHhcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 7778899999999999986 45999999999999999999999999999998864 478888777766666677766
Q ss_pred HHHHHHHHHHHC-------------------------------------------------------------C------
Q 041936 234 DVNKVLQMMERY-------------------------------------------------------------G------ 246 (402)
Q Consensus 234 ~a~~~~~~~~~~-------------------------------------------------------------~------ 246 (402)
.|..+|+...+. |
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 666666544110 0
Q ss_pred -------------CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH-----HHH---HhcCCHH
Q 041936 247 -------------MKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNS--VTYSHFI-----YGF---CKDGNFE 303 (402)
Q Consensus 247 -------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~-----~~~---~~~~~~~ 303 (402)
-+-|-.+|--.++.-...|+.+...++|++.+.. ++|-. ..|...| .++ ....+.+
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 0223344445555556667888888888887765 34421 1121111 111 2356777
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHH----HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMV----YFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELI 379 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 379 (402)
.+.++|+..++. ++-...||..+- ..-.++.++..|.+++..++ |.-|...+|...|..-.+.+++|....++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777766652 222233333222 22234556666666666555 34566667776666666777777777777
Q ss_pred HHHHhcCCCChhhHH
Q 041936 380 GLVKEKFTKNVDTWN 394 (402)
Q Consensus 380 ~~~~~~~~~~~~~~~ 394 (402)
++..+-.|.|..+|.
T Consensus 461 Ekfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 461 EKFLEFSPENCYAWS 475 (677)
T ss_pred HHHHhcChHhhHHHH
Confidence 777766666666664
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-07 Score=83.93 Aligned_cols=326 Identities=16% Similarity=0.196 Sum_probs=189.7
Q ss_pred HhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH
Q 041936 49 LKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEH 128 (402)
Q Consensus 49 l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 128 (402)
|...|+-++|.+..+..... ..-+.+.|..+.-..-...++++|++.|.... ...+.+..++..+...-++.++++.
T Consensus 51 L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl-~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL-KIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 45677888888888776543 22355677777666666789999999999888 4567788888888888888888888
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH------HHHHhcCChhHHHH
Q 041936 129 AVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI------KAFCESSDSSSAYS 202 (402)
Q Consensus 129 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li------~~~~~~~~~~~a~~ 202 (402)
.......+.+.. +.....|..+..++.-.|+...|..++++..+...-.|+...|.-.. ....+.|..++|.+
T Consensus 128 ~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 128 YLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 888888877764 44556777888888888999999999988865543345555543322 22334455555555
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH-HHHccCCHHHHH-HHHH-----
Q 041936 203 ILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIH-SLCKLRKCAEAK-ALLD----- 275 (402)
Q Consensus 203 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~-~~~~----- 275 (402)
.+..-... +.-....-.+-...+.+.+++++|..++..++..+ ||..-|...+. ++.+-.+..++. .+|.
T Consensus 207 ~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 207 HLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 44443322 11111112223344455555556655555555543 44333332222 111111111111 1111
Q ss_pred -----------------------------HHHHCCC--------------------------------------------
Q 041936 276 -----------------------------EMLSKGM-------------------------------------------- 282 (402)
Q Consensus 276 -----------------------------~~~~~~~-------------------------------------------- 282 (402)
.+.+.|+
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 1111111
Q ss_pred --CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH
Q 041936 283 --KPNSV--TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFT 357 (402)
Q Consensus 283 --~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 357 (402)
+|... ++-.++..+-+.|+++.|..+++..+.+ .|+ ...|..-.+.+...|++++|..++++..+.+ .+|..
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~ 440 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRA 440 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHH
Confidence 22222 2334556666677777777777766653 344 2344444566666777777777777776655 45554
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
.-..-.....+.++.++|.++......
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 444555556666777777766665544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-08 Score=78.12 Aligned_cols=198 Identities=11% Similarity=0.008 Sum_probs=138.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAF 191 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 191 (402)
....+...|.+.|++..|..-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++..... +-+-...|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHH
Confidence 34456667788888888888888887776 5666777778888888888888888887775432 33445667777777
Q ss_pred HhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHH
Q 041936 192 CESSDSSSAYSILAEMDRKS-IKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEA 270 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 270 (402)
|..|.+++|.+.|++....- ...-..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 77888888888887776652 22234567777777777788888888887777654 33344566666777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041936 271 KALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 271 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 314 (402)
...++.....+. ++..+.-..|+.-...|+.+.+-++=..+..
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777777776654 5666666666666677777776666555554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-07 Score=78.41 Aligned_cols=311 Identities=11% Similarity=0.056 Sum_probs=230.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHH-H
Q 041936 71 SHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAF-N 149 (402)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~ 149 (402)
.+.+..-.--+-..+...|++..|+.-|.... .+++.+...+..-...|...|+-..|+.-+...++. +||-..- .
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAv-e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAV-EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 33455566667788888999999999999888 556666666666677899999999999999998876 5664332 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH--------------HHH--HHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 041936 150 ALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL--------------DTY--NRVIKAFCESSDSSSAYSILAEMDRKSIK 213 (402)
Q Consensus 150 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--------------~~~--~~li~~~~~~~~~~~a~~~~~~~~~~g~~ 213 (402)
.-...+.+.|.++.|..-|+..++. .|+. ..| ...+..+...|+...|+.....+++.. +
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 3345788999999999999988755 3321 112 223456677899999999999999874 5
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH----H
Q 041936 214 PNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVT----Y 289 (402)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----~ 289 (402)
.|...|..-..+|...|++..|+.=++...+.. ..++.++-.+-..+...|+.+.++...++..+. .||... |
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~Y 263 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFY 263 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHH
Confidence 688888888999999999999998888776654 355666666777888899999999999888775 555432 2
Q ss_pred HHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh---HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH
Q 041936 290 SHF---------IYGFCKDGNFEEAKKFYRIMSNSGLSPNSSV---YFTMVYFMCKGGDYETALGFCKESIAKGWVPNFT 357 (402)
Q Consensus 290 ~~l---------~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 357 (402)
-.+ +......++|.++.+..+...+......... +..+-.++...|++.+|++...+.++.. +.|..
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~ 342 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHH
Confidence 111 2233456778888888888777643322233 3445566677889999999999998864 45588
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhh
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDT 392 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 392 (402)
++.--..+|.-...+++|+.-|+...+..+.|...
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 88888999999999999999999998876665544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-09 Score=91.36 Aligned_cols=151 Identities=15% Similarity=0.245 Sum_probs=70.7
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 041936 224 AGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK----D 299 (402)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 299 (402)
.++...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCc
Confidence 3344455555555554321 23334444555555555555555555555543 112 222223333322 2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-HHHHHH
Q 041936 300 GNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKV-SEAKEL 378 (402)
Q Consensus 300 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~ 378 (402)
+.+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++.+..+.+ +-++.+...++.+....|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 2455566666655443 33455555555555555566666666555555443 33444444555555555554 444455
Q ss_pred HHHHHhc
Q 041936 379 IGLVKEK 385 (402)
Q Consensus 379 ~~~~~~~ 385 (402)
+.++...
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 5555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-06 Score=79.52 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=39.7
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhh
Q 041936 41 KTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELK 102 (402)
Q Consensus 41 ~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (402)
.+...++.+.+.+-|+.++.+++....- ++..-.--|..++..+++++|.+.+....
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVL 196 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhc
Confidence 3456777778888888888777766433 33445666777788888888877776665
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.9e-07 Score=80.12 Aligned_cols=344 Identities=13% Similarity=0.064 Sum_probs=208.1
Q ss_pred HHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCH
Q 041936 47 TLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMT 126 (402)
Q Consensus 47 ~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 126 (402)
....+.+++++|.+......... +-|...+..-+-++.+.+.|++|+.+.+.-. ........+..=..+..+.+..
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~--~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNG--ALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc--hhhhcchhhHHHHHHHHHcccH
Confidence 34455668888888888776553 3345566777778888899999986665532 1111111212233445678888
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcC---------------------------CCC
Q 041936 127 EHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYG---------------------------IKP 179 (402)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~p 179 (402)
|+|+..++-.. +.+..+...-...+.+.|++++|..+|+.+.+... ..|
T Consensus 96 Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 96 DEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 88888888332 23344566666778888888888888888744310 111
Q ss_pred CHHHHHHHH---HHHHhcCChhHHHHHHHHHHhCC-------CCCCH------h-hHHHHHHHHhccCCHHHHHHHHHHH
Q 041936 180 DLDTYNRVI---KAFCESSDSSSAYSILAEMDRKS-------IKPNA------S-SFGALVAGFYKEEKYEDVNKVLQMM 242 (402)
Q Consensus 180 ~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~g-------~~~~~------~-~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (402)
..+|..+- -.++..|++.+|+++++...+.+ -.-+. . .-..+.-++-..|+.++|.++|...
T Consensus 172 -e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 172 -EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred -cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 11333333 34557899999999998883221 01011 1 1223445566789999999999888
Q ss_pred HHCCCCCChhhH---------------------------------------------------HHHHHHHHcc-------
Q 041936 243 ERYGMKSGVSMY---------------------------------------------------NVRIHSLCKL------- 264 (402)
Q Consensus 243 ~~~~~~~~~~~~---------------------------------------------------~~ll~~~~~~------- 264 (402)
++.. ++|.... +.++..|...
T Consensus 251 i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7655 2322110 1111111111
Q ss_pred -------------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------H
Q 041936 265 -------------------------RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYR--------I 311 (402)
Q Consensus 265 -------------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~ 311 (402)
..+.++.+++...-+....-.....-.+++.....|+++.|.+++. .
T Consensus 330 ~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 330 SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 1122233333333332111123344556677788999999999999 5
Q ss_pred HHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCCHHH----HHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 312 MSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK--GWVPNFTT----MKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 312 m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
+.+.+..| .+...++..+.+.++.+.|..++.+.++- .-.+.... +.-+...-.+.|+.++|..+++++.+.
T Consensus 410 ~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 410 ILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 55544444 45566777788888777777777766542 11122233 333344445789999999999999999
Q ss_pred CCCChhhHHHHHhcCCC
Q 041936 386 FTKNVDTWNEIEAGLPQ 402 (402)
Q Consensus 386 ~~~~~~~~~~l~~~~~~ 402 (402)
.++|..+.-.++.+|++
T Consensus 488 n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 488 NPNDTDLLVQLVTAYAR 504 (652)
T ss_pred CCchHHHHHHHHHHHHh
Confidence 99999999999988864
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-09 Score=97.84 Aligned_cols=256 Identities=16% Similarity=0.122 Sum_probs=178.0
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhc
Q 041936 96 QYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTY 175 (402)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 175 (402)
.++-.+...|..|+..+|..+|.-|+..|+++.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45556666788899899999999999999999998 9999888777888899999999988888876655
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHH----hCCCCCCHhhHHHH--------------HHHHhccCCHHH
Q 041936 176 GIKPDLDTYNRVIKAFCESSDSSS---AYSILAEMD----RKSIKPNASSFGAL--------------VAGFYKEEKYED 234 (402)
Q Consensus 176 ~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~~~----~~g~~~~~~~~~~l--------------~~~~~~~~~~~~ 234 (402)
.|...||..|..+|...||+.. +.+.+..+. ..|+......+-.. +....-.|-++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6788899999999999999765 222222221 22322111111111 112222333444
Q ss_pred HHHHHHHHHHCC-CCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041936 235 VNKVLQMMERYG-MKSGVSMYNVRIHSLCKLR-KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIM 312 (402)
Q Consensus 235 a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 312 (402)
+++++..+.... ..|..+ +++-+.... .+++-..+.+...+ .|+..+|..++.+-...|+.+.|..++.+|
T Consensus 158 llkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 444443332211 011111 233222222 23333333333332 589999999999999999999999999999
Q ss_pred HhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 041936 313 SNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSE 374 (402)
Q Consensus 313 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 374 (402)
.+.|+..+..-|..++.+ .++..-+..+++-|.+.|+.|+.+|+...+..+.+.|....
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~ 289 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY 289 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh
Confidence 999999998888888765 78888899999999999999999999998888888666433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-07 Score=78.36 Aligned_cols=296 Identities=8% Similarity=0.027 Sum_probs=210.3
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 041936 54 NPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTF 133 (402)
Q Consensus 54 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 133 (402)
+...|.+.+-.+......+-+......+...+...|+.++|...|++... -++-+..........+.+.|+++....+.
T Consensus 211 ~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~ 289 (564)
T KOG1174|consen 211 KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-ANPDNVEAMDLYAVLLGQEGGCEQDSALM 289 (564)
T ss_pred ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-CChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence 33344444444444445666788899999999999999999999999873 22323222222233457889999888888
Q ss_pred HHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 041936 134 KEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIK 213 (402)
Q Consensus 134 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~ 213 (402)
..+.... ..+...|-.-+..+....+++.|+.+-++.++.. +.+...|-.-...+...+++++|.-.|+..+... +
T Consensus 290 ~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p 365 (564)
T KOG1174|consen 290 DYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-P 365 (564)
T ss_pred HHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-h
Confidence 8776543 3455556555666677888999999888876432 2334445444567778899999999999887753 4
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHH-ccCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 041936 214 PNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRI-HSLC-KLRKCAEAKALLDEMLSKGMKPN-SVTYS 290 (402)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~p~-~~~~~ 290 (402)
-+...|.-|+..|...|++.+|..+-++..+. ++.+..+...+. ..+. ....-++|..++++.... .|+ ....+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~ 442 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVN 442 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHH
Confidence 57889999999999999999998877765543 133444444432 2222 222347888888887765 566 34677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 041936 291 HFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMK 360 (402)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (402)
.+...|...|..+.++.++++... ..||....+.|...+...+.+++|.+.|..+...+ +.+..+..
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d-P~~~~sl~ 509 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD-PKSKRTLR 509 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-ccchHHHH
Confidence 788889999999999999999887 46899999999999999999999999999988765 33444433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-07 Score=78.09 Aligned_cols=335 Identities=12% Similarity=0.080 Sum_probs=217.7
Q ss_pred CCCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHH
Q 041936 36 LTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAH 115 (402)
Q Consensus 36 ~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 115 (402)
..+.+.+..++..+.+-.++..|.+++.......+ .+....+.+..+|-...++..|.+.++++.. ..|.-...-.-
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q-l~P~~~qYrlY 83 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQ-LHPELEQYRLY 83 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hChHHHHHHHH
Confidence 34567778888888888888889888877765432 2667788888888888899999999998872 23322222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh
Q 041936 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALL--LALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE 193 (402)
Q Consensus 116 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 193 (402)
-...+.+.+.+.+|+++...|.+. ++...-..-+ ......+++..+..++++...+ -+..+.+...-...+
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----Cccchhccchheeec
Confidence 345677888999999998888652 2222211122 2334567888888888877422 244444555555567
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh----------------------
Q 041936 194 SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGV---------------------- 251 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------------- 251 (402)
.|+++.|.+-|+...+-|--.....|+..+. ..+.|+++.|++...++.++|+....
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 8999999999998877653435567776664 45678899999999999998865311
Q ss_pred ------hhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 041936 252 ------SMYNVRIHSLCKLRKCAEAKALLDEMLSK-GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVY 324 (402)
Q Consensus 252 ------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 324 (402)
..+|.-...+.+.|+++.|.+.+.+|.-+ ....|++|...+.-.- ..+++.....-+.-+.+.+. ....||
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETF 313 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETF 313 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHH
Confidence 12333334456778888888888888643 2345777766554322 23455555555555555533 345788
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH-cCCChHHHHHHHHHHHh
Q 041936 325 FTMVYFMCKGGDYETALGFCKESIAKGW-VPNFTTMKSLVTGLA-GASKVSEAKELIGLVKE 384 (402)
Q Consensus 325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 384 (402)
..++-.||+..-++.|..++.+--.... -.+...|+. +.+++ -.-..++|.+-++.+..
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888889999888888888765433211 234444543 34443 34567888777766543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.9e-09 Score=88.53 Aligned_cols=250 Identities=11% Similarity=0.045 Sum_probs=131.0
Q ss_pred HHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 041936 85 LSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEV 164 (402)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 164 (402)
..-.|++..++.-.+ ...............+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344566666654444 222222223334445566677777666443 3333322 55555554444444333444555
Q ss_pred HHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 165 KRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 165 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
..-+++.........+..........+...|++++|+++++.. .+.+.....+.+|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555444322111122222223334455567777777766532 2455666667777777777777777777766
Q ss_pred CCCCCChhhHHHHHHH----HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041936 245 YGMKSGVSMYNVRIHS----LCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN 320 (402)
Q Consensus 245 ~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 320 (402)
.+ .|. +...+..+ +.-.+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+.. +
T Consensus 160 ~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~ 234 (290)
T PF04733_consen 160 ID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-D 234 (290)
T ss_dssp CS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-H
T ss_pred cC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-C
Confidence 43 332 22223332 22234577777777776554 4456677777777777777777777777776654322 4
Q ss_pred HHhHHHHHHHHHccCCh-HHHHHHHHHHHhC
Q 041936 321 SSVYFTMVYFMCKGGDY-ETALGFCKESIAK 350 (402)
Q Consensus 321 ~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 350 (402)
..+...++.+....|+. +.+.+++.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 55555666666666666 5566666666653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.2e-07 Score=79.58 Aligned_cols=271 Identities=13% Similarity=0.072 Sum_probs=171.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEHKL-RHSVG-AFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV 187 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 187 (402)
...+..+...+...|+.+.+.+.+....+... ..+.. ........+...|++++|..++++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-
Confidence 34455666677778888888777777654331 22321 22233445678899999999999986652 444444443
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 041936 188 IKAFCE----SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCK 263 (402)
Q Consensus 188 i~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 263 (402)
...+.. .+..+.+.+.++.. ....+........+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 223333 34455555555441 11122233445566778899999999999999999876 5567778888999999
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHhH-H--HHHHHHHccCC
Q 041936 264 LRKCAEAKALLDEMLSKGM-KPNS--VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL-SPNSSVY-F--TMVYFMCKGGD 336 (402)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~-~--~l~~~~~~~g~ 336 (402)
.|++++|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++..+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999999887532 2232 3456788889999999999999999865422 1112111 1 33333444554
Q ss_pred hHHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 337 YETALGF--CKESIAKGW--VPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 337 ~~~a~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
.+.+.++ +........ ............++...|+.+.|..+++.+...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4444443 211111110 111222235677788999999999999998764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-07 Score=77.18 Aligned_cols=293 Identities=13% Similarity=0.108 Sum_probs=210.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHH-HHHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNAL-LLAL 155 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~ 155 (402)
.+..++..+.+..+++.|++++..-.++ .+.+..-...+..+|....++..|-..++++... .|...-|... ...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er-~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELER-SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3677888888999999999999887643 4556677778888999999999999999998765 4655555433 4667
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFC--ESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYE 233 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 233 (402)
.+.+.+..|.++...|.. .|+...-..-+.+.. ..+++..+..++++....| +..+.+...-...+.|+++
T Consensus 89 Y~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 788899999999988842 233332222233332 4688888988888876544 4555666666678999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-------------C---------------
Q 041936 234 DVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP-------------N--------------- 285 (402)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-------------~--------------- 285 (402)
.|.+-|+...+-+--.....|+..+.-| +.|+.+.|++...+++++|++- |
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9999999887754344456677766544 6689999999999998887542 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041936 286 SVTYSHFIYGFCKDGNFEEAKKFYRIMSNS-GLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVT 364 (402)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (402)
...+|.-...+.+.++++.|.+.+..|... ....|+.|...+.-.= ..+++....+-+.-+.... +-..+||..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHH
Confidence 123677777788999999999999988755 3445777776554322 2345555555566666654 456788888888
Q ss_pred HHHcCCChHHHHHHHHHH
Q 041936 365 GLAGASKVSEAKELIGLV 382 (402)
Q Consensus 365 ~~~~~g~~~~a~~~~~~~ 382 (402)
.|++..-++.|..++-+-
T Consensus 319 lyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHhhhHHHhHHHHHHhhC
Confidence 999999999988887653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-06 Score=78.50 Aligned_cols=128 Identities=13% Similarity=0.045 Sum_probs=102.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMC 332 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~ 332 (402)
|......+.+.+..++|...+.+....- .-....|......+...|.+++|.+.|...... .|+ .....++..++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence 4445566677777777777777766542 234556777777788889999999999988874 444 567788999999
Q ss_pred ccCChHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 333 KGGDYETALG--FCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 333 ~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
+.|+...|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|.+.|+...+.
T Consensus 730 e~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9998888887 999999988 779999999999999999999999999988775
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-06 Score=78.19 Aligned_cols=332 Identities=14% Similarity=0.077 Sum_probs=207.0
Q ss_pred HhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH
Q 041936 49 LKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEH 128 (402)
Q Consensus 49 l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 128 (402)
.-+.|+++.|...|..+..-.+ ++...|+.-..+++..|++++|.+=-.+-. .-.|....-|.....++.-.|++++
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~-~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTR-RLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHH-hcCCchhhHHHHhHHHHHhcccHHH
Confidence 4467899999999987754322 377899999999999999999977665554 2345556778888889999999999
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHH-------------------------HHHHHHHchhh---------
Q 041936 129 AVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKE-------------------------VKRVFIEFPKT--------- 174 (402)
Q Consensus 129 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------------------------a~~~~~~~~~~--------- 174 (402)
|+.-|.+-++.. +.+...++.+..++.......+ -..+++.+.+.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999999988775 6677788888887722200000 00000000000
Q ss_pred ----------------------------cCCCC------------C----------HHHHHHHHHHHHhcCChhHHHHHH
Q 041936 175 ----------------------------YGIKP------------D----------LDTYNRVIKAFCESSDSSSAYSIL 204 (402)
Q Consensus 175 ----------------------------~~~~p------------~----------~~~~~~li~~~~~~~~~~~a~~~~ 204 (402)
.+..| | ..-..-+.++..+..+++.|.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 00011 0 011233444555556666666666
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH-------HHHHHccCCHHHHHHHHHHH
Q 041936 205 AEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVR-------IHSLCKLRKCAEAKALLDEM 277 (402)
Q Consensus 205 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~ 277 (402)
....+.. -+..-++....+|...|.+..+...-....+.|. -...-|+.+ ..+|.+.++++.++..|.+.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 6666543 3444555566666777776666665555554441 122223332 23455556777777777776
Q ss_pred HHCCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041936 278 LSKGMKPNSVTY-------------------------SHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMC 332 (402)
Q Consensus 278 ~~~~~~p~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 332 (402)
......|+..+= ..-...+.+.|++..|+..|.+++... +-|...|....-+|.
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYL 403 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHH
Confidence 655444433221 111345567788888888888888765 235777888888888
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC
Q 041936 333 KGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKN 389 (402)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 389 (402)
+.|.+..|+.-.+..++.. ++....|..=..++....++++|.+.|++..+..|.+
T Consensus 404 kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred HHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 8888888888777777764 4444555555555556667788888888777764444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6e-06 Score=75.10 Aligned_cols=339 Identities=16% Similarity=0.144 Sum_probs=232.2
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH
Q 041936 39 KDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII 118 (402)
Q Consensus 39 ~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 118 (402)
...+..+++.+. .+.+..-+.+.+......+.++++. ....-.+...|+-++|........ +++..+..-|..+.-
T Consensus 8 ~~lF~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHgesl--AmkGL~L~~lg~~~ea~~~vr~gl-r~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 8 NALFRRALKCYE-TKQYKKGLKLIKQILKKFPEHGESL--AMKGLTLNCLGKKEEAYELVRLGL-RNDLKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHH-HHHHHhHHHHHHHHHHhCCccchhH--HhccchhhcccchHHHHHHHHHHh-ccCcccchhHHHHHH
Confidence 345566666655 4566777777777766666666543 444445677899999999998887 567777778888888
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChh
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSS 198 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 198 (402)
.+....++++|++.|......+ +.|...|.-+.-.-.+.|+++..........+. .+-....|..++.++.-.|+..
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999998877 778888888877778888988888777776543 1334456888888999999999
Q ss_pred HHHHHHHHHHhCC-CCCCHhhHHHHH------HHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH
Q 041936 199 SAYSILAEMDRKS-IKPNASSFGALV------AGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAK 271 (402)
Q Consensus 199 ~a~~~~~~~~~~g-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 271 (402)
.|..++++..+.. ..|+...|.... ....+.|.+++|.+.+..-...- ......-.+-...+.+.+++++|.
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHH
Confidence 9999999998764 246666655433 23456788888887776554331 122223334556788899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH-HH----------------------------------HHHHHhC
Q 041936 272 ALLDEMLSKGMKPNSVTYSHFIYGFC-KDGNFEEAK-KF----------------------------------YRIMSNS 315 (402)
Q Consensus 272 ~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~-~~----------------------------------~~~m~~~ 315 (402)
.+|..+... .||..-|...+..+. +--+.-++. .+ +..+.+.
T Consensus 240 ~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 240 KVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 999999987 566655544333222 111111111 11 1112222
Q ss_pred CC----------------------------------------------CCCHH--hHHHHHHHHHccCChHHHHHHHHHH
Q 041936 316 GL----------------------------------------------SPNSS--VYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 316 ~~----------------------------------------------~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
|+ .|... ++-.++..+-+.|+++.|..+++..
T Consensus 318 g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 21 23332 2345566677788999999999888
Q ss_pred HhCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC
Q 041936 348 IAKGWVPN-FTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKN 389 (402)
Q Consensus 348 ~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 389 (402)
+++ .|+ ++.|..-.+.+...|++++|..++++..+...+|
T Consensus 398 IdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 398 IDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred hcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 876 444 3556566788888999999999999988764444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-05 Score=68.29 Aligned_cols=338 Identities=9% Similarity=0.065 Sum_probs=178.7
Q ss_pred HHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC
Q 041936 45 ALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN 124 (402)
Q Consensus 45 ~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 124 (402)
.+.-+.+..++..|..+++.........- ..+---+..++.+.|++++|...++.+.. ...++..+...+..++.-.|
T Consensus 28 ~Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 28 ELEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMN-KDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred hHHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhc-cCCCCcccchhHHHHHHHHH
Confidence 35566677888888888876653221111 12222344556778999999999999884 45566666777777777788
Q ss_pred CHHHHHHHHHHhHhCC--------------CC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCC
Q 041936 125 MTEHAVRTFKEMDEHK--------------LR-----------HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP 179 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~--------------~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 179 (402)
.+.+|..+-....+.. -. .+..---+|.+.....-.+++|+++|...... .|
T Consensus 106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ 182 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NP 182 (557)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---Ch
Confidence 8888887765543210 00 00011112222222233466777777777543 45
Q ss_pred CHHHHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc--cCCHHHHH--HHH----------HHHHH
Q 041936 180 DLDTYNR-VIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK--EEKYEDVN--KVL----------QMMER 244 (402)
Q Consensus 180 ~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~~~~~~a~--~~~----------~~~~~ 244 (402)
.-...|. +.-+|.+..-++-+.++++-..++ ++-+....|.......+ .|+..+.+ ++. +.+.+
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 5555554 344566777777788887777665 23233344443333222 12211111 010 11111
Q ss_pred CCC------------CCC-----hhhHHHHHHHHHccCCHHHHHHHHHHH------------------------------
Q 041936 245 YGM------------KSG-----VSMYNVRIHSLCKLRKCAEAKALLDEM------------------------------ 277 (402)
Q Consensus 245 ~~~------------~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~------------------------------ 277 (402)
.++ -|. ...-..++-.|.+.+++.+|..+.+++
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 000 000 011112222344444554444444332
Q ss_pred --------HHCCCC----C----------------CHHHH---------------HHHHHHHHhcCCHHHHHHHHHHHHh
Q 041936 278 --------LSKGMK----P----------------NSVTY---------------SHFIYGFCKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 278 --------~~~~~~----p----------------~~~~~---------------~~l~~~~~~~~~~~~a~~~~~~m~~ 314 (402)
-+.+.. | |+.+| -.+.++++..|++.+|+++|-.+..
T Consensus 342 AqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 342 AQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC
Confidence 111111 0 11111 1355667777888888888877765
Q ss_pred CCCCCCHHhH-HHHHHHHHccCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhh
Q 041936 315 SGLSPNSSVY-FTMVYFMCKGGDYETALGFCKESIAKGWVPNF-TTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDT 392 (402)
Q Consensus 315 ~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 392 (402)
..++ |..+| ..+.++|.+.++++.|++++-++.. +.+. .....+.+-|.+.+.+--|.+.|+.+.. ..|+...
T Consensus 422 ~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~-lDP~pEn 496 (557)
T KOG3785|consen 422 PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI-LDPTPEN 496 (557)
T ss_pred hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc-cCCCccc
Confidence 5554 44555 4455677888888888777655432 2222 2334445667788888777777777654 3455444
Q ss_pred H
Q 041936 393 W 393 (402)
Q Consensus 393 ~ 393 (402)
|
T Consensus 497 W 497 (557)
T KOG3785|consen 497 W 497 (557)
T ss_pred c
Confidence 4
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9e-07 Score=86.73 Aligned_cols=232 Identities=13% Similarity=0.097 Sum_probs=133.3
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC-CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC
Q 041936 105 PDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH-KLR---HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD 180 (402)
Q Consensus 105 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 180 (402)
+.|.+.-.|-..|..+.+.++.++|.+++++.+.. ++. --...|.++++.-..-|.-+...++|++..+- .-.
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDA 1529 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cch
Confidence 34455555666666666667777777776665532 111 11234555665555566666666666666332 112
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CChhhHHHHHH
Q 041936 181 LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMK-SGVSMYNVRIH 259 (402)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~ 259 (402)
...|..|...|.+.+.+++|-++++.|.+. +.....+|...+..+.+.++-+.|..++.+..+.-.. -......-.++
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 234566666677777777777777776665 2245566666666667766666777776666553211 12333444445
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHccCCh
Q 041936 260 SLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS--SVYFTMVYFMCKGGDY 337 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~~ 337 (402)
.-.+.|+.+.+..+|+.......+ -...|+..++.-.++|+.+.+..+|++.+..++.|-. ..|...+..=-..|+-
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 555667777777777766655222 3456677777777777777777777777766655542 3444444444444554
Q ss_pred HHHH
Q 041936 338 ETAL 341 (402)
Q Consensus 338 ~~a~ 341 (402)
..++
T Consensus 1688 ~~vE 1691 (1710)
T KOG1070|consen 1688 KNVE 1691 (1710)
T ss_pred hhHH
Confidence 4333
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-05 Score=71.92 Aligned_cols=157 Identities=7% Similarity=-0.023 Sum_probs=85.6
Q ss_pred HHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCH
Q 041936 47 TLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMT 126 (402)
Q Consensus 47 ~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 126 (402)
..+..+++..+....|+.+...-++.--...|...+......+-.+.+..+++..++. .+......+..+...++.
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccch
Confidence 3444566666666666666544444444456777777777777777888888777632 222244556666778888
Q ss_pred HHHHHHHHHhHhCC------CCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHchhhcCCCCCH--HHHHHHHHHHHhcC
Q 041936 127 EHAVRTFKEMDEHK------LRHSVGAFNALLLALTIAKDYK---EVKRVFIEFPKTYGIKPDL--DTYNRVIKAFCESS 195 (402)
Q Consensus 127 ~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~ 195 (402)
++|.+.+....... -+.+...|+.+-+...+.-+.- ....++..++. .-+|. ..|++|..-|.+.|
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~---rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR---RFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc---cCcHHHHHHHHHHHHHHHHhh
Confidence 88877776654211 1333344444444333332221 12222332221 12332 24666666666666
Q ss_pred ChhHHHHHHHHHHhC
Q 041936 196 DSSSAYSILAEMDRK 210 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~ 210 (402)
.+++|.++|++.+..
T Consensus 263 ~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT 277 (835)
T ss_pred hhHHHHHHHHHHHHh
Confidence 666666666665543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-06 Score=71.87 Aligned_cols=155 Identities=13% Similarity=0.116 Sum_probs=95.2
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041936 82 INKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY 161 (402)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (402)
+.-+....++..|+.+++--...+......+-.-+..++.+.|++++|+..+..+.+.. .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34455677888888888776633333223344445667889999999999999988755 66667776777777778888
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh------------------------------cCChhHHHHHHHHHHhCC
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE------------------------------SSDSSSAYSILAEMDRKS 211 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~------------------------------~~~~~~a~~~~~~~~~~g 211 (402)
.+|..+-....+ +...-..|+....+ .-.+.+|+++|.+....
T Consensus 108 ~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 108 IEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 888887766532 11222222222222 23356667777666654
Q ss_pred CCCCHhhHHHHH-HHHhccCCHHHHHHHHHHHHHC
Q 041936 212 IKPNASSFGALV-AGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 212 ~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
.|+-...|.-+ -+|.+..-++-+.++++-..+.
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 23333333332 3455666667777777655543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-06 Score=81.46 Aligned_cols=300 Identities=13% Similarity=0.103 Sum_probs=182.8
Q ss_pred hcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcC-C-------CCCchHHHHHHHHHHH
Q 041936 50 KSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTR-P-------DLQNERFHAHSIILYG 121 (402)
Q Consensus 50 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~~~~~~~~~~li~~~~ 121 (402)
-..|+.+.|+.-++.+.. ...|..+.+.|.+..+++-|.-.+..|... + ...+.+.-........
T Consensus 739 vtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 355778888777665543 358999999999999999998888777611 1 1111122223344467
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAY 201 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 201 (402)
..|.+++|+.+|.+.++ |..|=..|-..|.+++|.++-+.- .+ -.=-.||.....-+-..+|.+.|+
T Consensus 812 eLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~-DR---iHLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETK-DR---IHLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhc-cc---eehhhhHHHHHHHHHhhccHHHHH
Confidence 88999999999999875 444556778889999999887543 21 112246666667677778888888
Q ss_pred HHHHHHH----------hCC---------CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 041936 202 SILAEMD----------RKS---------IKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLC 262 (402)
Q Consensus 202 ~~~~~~~----------~~g---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 262 (402)
+.|++.. ... -..|...|......+-..|+.+.|+.+|....+ |-++++..|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 8776532 111 123445566667777788999999999887754 334444444
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------CCCC-----------C-C
Q 041936 263 KLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSN----------SGLS-----------P-N 320 (402)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----------~~~~-----------~-~ 320 (402)
-.|+.++|-++-++-. |....-.+.+.|...|++.+|..+|.+... .+++ | |
T Consensus 950 ~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d 1023 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSD 1023 (1416)
T ss_pred eccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchh
Confidence 4455555544433321 333333344444444555444444443221 0100 0 0
Q ss_pred H-----------HhHHHHHHHHHccCChHHHHHHHHH--------HHhC--CCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 041936 321 S-----------SVYFTMVYFMCKGGDYETALGFCKE--------SIAK--GWVPNFTTMKSLVTGLAGASKVSEAKELI 379 (402)
Q Consensus 321 ~-----------~~~~~l~~~~~~~g~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 379 (402)
. .-+...+..|.+.|.+.+|+++--+ ++.. .-..|+...+.-.+.+....++++|..++
T Consensus 1024 ~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL 1103 (1416)
T KOG3617|consen 1024 LVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLL 1103 (1416)
T ss_pred HHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 0 0122334567778888777765322 2222 33457778888888888888899888887
Q ss_pred HHHHh
Q 041936 380 GLVKE 384 (402)
Q Consensus 380 ~~~~~ 384 (402)
-...+
T Consensus 1104 ~~ar~ 1108 (1416)
T KOG3617|consen 1104 CLARE 1108 (1416)
T ss_pred HHHHH
Confidence 65544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.6e-06 Score=72.61 Aligned_cols=138 Identities=9% Similarity=0.025 Sum_probs=73.5
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK-DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
.+...++.++|+.+..++++.+ +-+..+|+....++...| ++++++..++++.+.. +.+..+|+-....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCch
Confidence 3445566666777666666654 444455555555555555 4566666666665432 23333444433333344432
Q ss_pred --hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 041936 198 --SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSL 261 (402)
Q Consensus 198 --~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (402)
+++..+++++.+.. +-|..+|+....++...|+++++++.++++++.+ +.+...|+.....+
T Consensus 123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl 186 (320)
T PLN02789 123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVI 186 (320)
T ss_pred hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHH
Confidence 45555565555543 2355556655556666666666666666666554 33444455444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-07 Score=81.56 Aligned_cols=253 Identities=11% Similarity=0.076 Sum_probs=174.5
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChh
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSS 198 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 198 (402)
.+.+.|++.+|.-.|+...+.+ |.+...|..|.......++-..|+..+.+..+-. +-+....-.|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHH
Confidence 4667888888888888888776 6778888888888888888888888888876431 334566777777888888888
Q ss_pred HHHHHHHHHHhCCCC-----C---CHhhHHHHHHHHhccCCHHHHHHHHHHH-HHCCCCCChhhHHHHHHHHHccCCHHH
Q 041936 199 SAYSILAEMDRKSIK-----P---NASSFGALVAGFYKEEKYEDVNKVLQMM-ERYGMKSGVSMYNVRIHSLCKLRKCAE 269 (402)
Q Consensus 199 ~a~~~~~~~~~~g~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~ 269 (402)
.|++.++.-+....+ + +...-.. ..+..........++|-++ ...+..+|..++..|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888888876554210 0 0000000 1222333344555555444 344434677777788888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHH
Q 041936 270 AKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESI 348 (402)
Q Consensus 270 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 348 (402)
|.+.|+........ |...||.|...++...+.++|+..|.+.++. +|+ ......|..+|...|.+++|.+.|-.++
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999988876332 6778899988888888899999999988884 555 3445556777888899998888876654
Q ss_pred hC---------CCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 041936 349 AK---------GWVPNFTTMKSLVTGLAGASKVSEAKELI 379 (402)
Q Consensus 349 ~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 379 (402)
.. ...++...|..|=.++.-.++.|.+.+..
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 31 12234567777766777777776555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-05 Score=80.64 Aligned_cols=308 Identities=8% Similarity=-0.028 Sum_probs=190.8
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCCC------CC--chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCH----HHH
Q 041936 81 AINKLSEANYFNGISQYLEELKTRPD------LQ--NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSV----GAF 148 (402)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~------~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~ 148 (402)
....+...|+++++..++......-. .+ .......+...+...|++++|...++...+.-...+. ...
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 34445567888888888877652111 11 1122222334566789999999999887653111121 244
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhcCC--CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-CHh
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFPKTYGI--KP--DLDTYNRVIKAFCESSDSSSAYSILAEMDRK----SIK--P-NAS 217 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~ 217 (402)
+.+...+...|++++|...+++......- .+ ...++..+...+...|++++|...+++.... |.. + ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 55666778889999998888877432110 11 1234455667778889999999888876542 211 1 123
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCC--CCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHH---
Q 041936 218 SFGALVAGFYKEEKYEDVNKVLQMMERYG--MKS--GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMK-PNSVTY--- 289 (402)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~--- 289 (402)
.+..+...+...|++++|...+++..... ..+ ....+..+...+...|+.++|.+.+......... .....+
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 34455566777899999998888765421 112 2334445566777889999999988887542111 011111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCChHHHHHHHHHHHhC----CCCC-CHHHH
Q 041936 290 --SHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN---SSVYFTMVYFMCKGGDYETALGFCKESIAK----GWVP-NFTTM 359 (402)
Q Consensus 290 --~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~ 359 (402)
...+..+...|+.+.|..++........... ...+..+..++...|+.++|...+++.... |... ...+.
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 1122444567888888888777554321111 111345667788899999999999887653 3222 23456
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhcCCC
Q 041936 360 KSLVTGLAGASKVSEAKELIGLVKEKFTK 388 (402)
Q Consensus 360 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 388 (402)
..+..++.+.|+.++|...+.+..+...+
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 66778888999999999999999886433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.6e-07 Score=79.40 Aligned_cols=225 Identities=15% Similarity=0.092 Sum_probs=168.2
Q ss_pred HHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH
Q 041936 153 LALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKY 232 (402)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 232 (402)
.-+.+.|++.+|.-.|+..+++. +-+...|..|......+++-..|+..+++..+.. +-|....-.|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34678899999999999987763 5567889999999999999999999999998864 34677778888888899988
Q ss_pred HHHHHHHHHHHHCCCC--------CChhhHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHH
Q 041936 233 EDVNKVLQMMERYGMK--------SGVSMYNVRIHSLCKLRKCAEAKALLDEMLS-KGMKPNSVTYSHFIYGFCKDGNFE 303 (402)
Q Consensus 233 ~~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~ 303 (402)
..|.+.++.-+....+ ++..+-.. ..+.....+....++|-++.. .+..+|......|.-.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 8999988866443210 00000000 122333445566666666654 444467778888888888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN-FTTMKSLVTGLAGASKVSEAKELIGLV 382 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 382 (402)
+|.+.|+..+..... |..+||.|...++...+.++|...|.++++. .|. +.....|.-.|...|.+++|.+.|-.+
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999985322 5788999999999999999999999999986 443 344556777899999999999988776
Q ss_pred Hhc
Q 041936 383 KEK 385 (402)
Q Consensus 383 ~~~ 385 (402)
...
T Consensus 525 L~m 527 (579)
T KOG1125|consen 525 LSM 527 (579)
T ss_pred HHh
Confidence 553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-06 Score=79.21 Aligned_cols=211 Identities=10% Similarity=0.131 Sum_probs=122.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC
Q 041936 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS 195 (402)
Q Consensus 116 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 195 (402)
+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+-.++ +||...|..+........
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhccChH
Confidence 3445555566666666655543 3445555666666666665555544332 556666666555555555
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.+++..|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 555555555443221 11111122233566666666666555543 3445566666666667777777777777
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 276 EMLSKGMKPN-SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 276 ~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
..... .|| ...||.+-.+|.+.++-.+|...+.+..+.+ .-+-..|...+....+.|.+++|.+.+..+.+
T Consensus 544 rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 544 RCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 66654 343 4567777777777777777777777777665 33455566666666677777777777766654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.1e-06 Score=71.85 Aligned_cols=207 Identities=7% Similarity=-0.035 Sum_probs=135.5
Q ss_pred HHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH--
Q 041936 85 LSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN-MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY-- 161 (402)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 161 (402)
+...++.++|+.+.++++. ..+.+...|..--.++...| ++++++..++++.+.+ +.+..+|+....++.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~-lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIR-LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHH-HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 4445677788888877773 23444455555545556666 5788888888888776 56666777666666666653
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc---CCH----HH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKE---EKY----ED 234 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---~~~----~~ 234 (402)
+++..+++++.+.. +-+..+|+-..-.+...|+++++++.++++++.+.. |...|+....++.+. |.. ++
T Consensus 125 ~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 56777887776543 446677887777888888899999999998887633 666777666555443 222 35
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041936 235 VNKVLQMMERYGMKSGVSMYNVRIHSLCKL----RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK 298 (402)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 298 (402)
..+....++... +-+...|+.+...+... +...+|.+.+.+....++. +......|+..|+.
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 556665666554 56677777777777662 3345577777776654322 55566667776664
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.3e-07 Score=82.36 Aligned_cols=221 Identities=11% Similarity=0.031 Sum_probs=181.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGA 221 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 221 (402)
+|-...-..+...+...|-...|..+|+++ ..|.-++.+|+..|+..+|..+..+..++ +||+..|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 344444456778899999999999999887 24888999999999999999999988874 789999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041936 222 LVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 301 (402)
+++.....--+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +.-..+|-....+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 999888777788998888765432 11222223345799999999999887763 2256788888888899999
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 041936 302 FEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIG 380 (402)
Q Consensus 302 ~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 380 (402)
++.|.+.|...... .|| ...|+.+-.+|.+.++-.+|...+++..+.+ .-+...|...+-...+.|.+++|.+.+.
T Consensus 535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999999874 454 6889999999999999999999999999987 6667778888888899999999999999
Q ss_pred HHHhc
Q 041936 381 LVKEK 385 (402)
Q Consensus 381 ~~~~~ 385 (402)
++.+.
T Consensus 612 rll~~ 616 (777)
T KOG1128|consen 612 RLLDL 616 (777)
T ss_pred HHHHh
Confidence 88763
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7e-06 Score=80.80 Aligned_cols=239 Identities=12% Similarity=0.079 Sum_probs=188.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD---LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASS 218 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 218 (402)
|-+...|-..|......++.++|.++.++....-++.-. ...|.++++.-...|.-+...++|+++.+.. -...+
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 455677899999999999999999999998764333222 2357777777777788889999999998852 23457
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 041936 219 FGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP-NSVTYSHFIYGFC 297 (402)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 297 (402)
|..|...|.+.+++++|.++|+.|.+.- ......|...+..+.+.++-+.|.+++.+..+.-.+- ........++.-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8899999999999999999999998864 3677889999999999999999999999988762221 2234455566667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCChHHH
Q 041936 298 KDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNF--TTMKSLVTGLAGASKVSEA 375 (402)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a 375 (402)
+.|+.+++..+|+.....-.+ ....|+.+++.-.++|+.+.+..+|++.+..++.|-. ..|...+..--+.|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 899999999999999876332 4678999999999999999999999999999876643 5677777777777886666
Q ss_pred HHHHHHHHh
Q 041936 376 KELIGLVKE 384 (402)
Q Consensus 376 ~~~~~~~~~ 384 (402)
+.+=.++.+
T Consensus 1691 E~VKarA~E 1699 (1710)
T KOG1070|consen 1691 EYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHH
Confidence 555444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-06 Score=81.02 Aligned_cols=181 Identities=7% Similarity=-0.064 Sum_probs=118.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 041936 71 SHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNA 150 (402)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 150 (402)
+..+...+-.+.....+.|.+++|..+++... .-.|........++..+.+.+++++|+..+++..+.. +.+....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~-~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH-QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 33456777777778888888888888887777 3345556666677777888888888888888877765 556667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 151 LLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
+..++.+.|++++|..+|+++... .+-+..++..+...+-..|+.++|...|++..+.- .+...-|+..+ +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------V 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------H
Confidence 777778888888888888887642 23346677777777778888888888888776652 23344444443 2
Q ss_pred CHHHHHHHHHHHHHCC----CCCChhhHHHHHHHHH
Q 041936 231 KYEDVNKVLQMMERYG----MKSGVSMYNVRIHSLC 262 (402)
Q Consensus 231 ~~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~ 262 (402)
+...-...++++.-.+ .+..+.+....|.-|.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIG 266 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHh
Confidence 3334444555554333 2223344444554444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.4e-05 Score=79.69 Aligned_cols=303 Identities=10% Similarity=0.037 Sum_probs=188.4
Q ss_pred HHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC------CCCH--HHHHHHHHH
Q 041936 83 NKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKL------RHSV--GAFNALLLA 154 (402)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~------~~~~--~~~~~l~~~ 154 (402)
..+...|+++.+..+++.+.......+..........+...|++++|..++....+.-- .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777776653111111222333445556788999999999987754210 1111 122233455
Q ss_pred HHHcCCHHHHHHHHHHchhhcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHhhHHHHHHHH
Q 041936 155 LTIAKDYKEVKRVFIEFPKTYGIKP---DLDTYNRVIKAFCESSDSSSAYSILAEMDRK----SIK-PNASSFGALVAGF 226 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~l~~~~ 226 (402)
+...|++++|...+++......... .....+.+...+...|++++|...+++.... |-. ....++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 6789999999999988754211111 1134456667778899999999999887643 211 1123455667778
Q ss_pred hccCCHHHHHHHHHHHHH----CCCC--C-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHH
Q 041936 227 YKEEKYEDVNKVLQMMER----YGMK--S-GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG--MKP--NSVTYSHFIYG 295 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~p--~~~~~~~l~~~ 295 (402)
...|++++|...+++... .+.. + ....+..+...+...|++++|...+++..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 899999999999887654 2211 1 22334455566777899999999998876531 112 23345556677
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--CCCCHH--hH--HHHHHHHHccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 041936 296 FCKDGNFEEAKKFYRIMSNSG--LSPNSS--VY--FTMVYFMCKGGDYETALGFCKESIAKGWVPN---FTTMKSLVTGL 366 (402)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 366 (402)
+...|++++|...+....... ...... .. ...+..+...|+.+.|..++........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 888999999999998875431 111111 10 1122444568999999999877654321111 11234667788
Q ss_pred HcCCChHHHHHHHHHHHhc
Q 041936 367 AGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 367 ~~~g~~~~a~~~~~~~~~~ 385 (402)
...|+.++|...+++....
T Consensus 702 ~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 702 ILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8999999999999988764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-06 Score=69.08 Aligned_cols=120 Identities=10% Similarity=0.060 Sum_probs=64.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHH
Q 041936 229 EEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYG-FCKDGN--FEEA 305 (402)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~--~~~a 305 (402)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444555555555555444 455555666666666666666666666665554322 44444545444 234444 3566
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 306 KKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 306 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
.+++++..+.+.. +...+..+...+...|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666554322 34455555555556666666666666655543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-05 Score=75.33 Aligned_cols=202 Identities=15% Similarity=0.176 Sum_probs=96.8
Q ss_pred CCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHH
Q 041936 37 TSKDKTRAALTLLKSESNPEKILEICRAAALTPESH-LDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAH 115 (402)
Q Consensus 37 ~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 115 (402)
.+....+-..+++-..+-|.+..++++.....+..- -+...-+.++-...+. +..++.++.+++..- +.+ .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdny-Da~------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNY-DAP------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccC-Cch------h
Confidence 344556667778888888888888888876555332 2333334444333333 445566666665421 111 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC
Q 041936 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS 195 (402)
Q Consensus 116 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 195 (402)
+...+...+-+++|..+|++.. .+....+.|+.- -+.++.|.+.-++.. .+..|..+..+-.+.|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcC
Confidence 2333455666677777766542 223333333321 233344444433331 2233455555555555
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 041936 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAE 269 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 269 (402)
.+.+|.+-|-+. -|+..|..+++...+.|.|++-.+.+....+..-+|.+ =+.+|-+|++.++..+
T Consensus 1119 ~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTE 1184 (1666)
T ss_pred chHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHH
Confidence 554444433222 13344445555555555555555544444443333322 2234444444444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-06 Score=72.90 Aligned_cols=186 Identities=14% Similarity=0.118 Sum_probs=124.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh---
Q 041936 179 PDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPN---ASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVS--- 252 (402)
Q Consensus 179 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 252 (402)
.....+..+...+...|++++|...|+++.... +.+ ..++..+..++...|++++|...++.+.+... .+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHH
Confidence 355667778888888999999999999887753 212 24667778888889999999999998887541 1221
Q ss_pred hHHHHHHHHHcc--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh
Q 041936 253 MYNVRIHSLCKL--------RKCAEAKALLDEMLSKGMKPNS-VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSV 323 (402)
Q Consensus 253 ~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 323 (402)
++..+..++... |+.++|.+.|+.+... .|+. ..+..+..... .... . ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------L--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------H--------HHH
Confidence 344444555543 6778888888888776 3332 22222211100 0000 0 001
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 041936 324 YFTMVYFMCKGGDYETALGFCKESIAKG--WVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKF 386 (402)
Q Consensus 324 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 386 (402)
...+...+.+.|++++|...++++.+.. -+.....+..+..++.+.|++++|...++.+...+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1245567888999999999999988762 12345788889999999999999999998887754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.4e-05 Score=68.40 Aligned_cols=329 Identities=14% Similarity=0.118 Sum_probs=190.5
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 041936 42 TRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYG 121 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 121 (402)
+.--+.++...+.++.|+.+.+.-... ..+...+..-..+.-+.+..++|+..++... ..+..+...-...+.
T Consensus 49 ~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlY 121 (652)
T KOG2376|consen 49 IRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLY 121 (652)
T ss_pred HhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHH
Confidence 333445566677788888665543321 1111111233445567788888888887322 233445555566778
Q ss_pred hcCCHHHHHHHHHHhHhCCCCC---------------------------CHHHHHHHH---HHHHHcCCHHHHHHHHHHc
Q 041936 122 QANMTEHAVRTFKEMDEHKLRH---------------------------SVGAFNALL---LALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~---------------------------~~~~~~~l~---~~~~~~~~~~~a~~~~~~~ 171 (402)
+.|++++|+++|+.+.+.+.+. ...+|..+. -.+...|++.+|+++++..
T Consensus 122 rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 122 RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 8888999988888886544220 011333322 2456678999999998877
Q ss_pred hhh--------c----CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH----HHHHHH---------
Q 041936 172 PKT--------Y----GIKPDLD-TYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSF----GALVAG--------- 225 (402)
Q Consensus 172 ~~~--------~----~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~--------- 225 (402)
.+. . ++.-+.. .-.-|...+...|+..+|..+|...++.. .+|.... |.++..
T Consensus 202 ~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~ 280 (652)
T KOG2376|consen 202 LRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDG 280 (652)
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCch
Confidence 211 0 0111111 12234556677899999999888887764 2333211 111110
Q ss_pred --------------------------------------Hhc--------------------------------cCCHHHH
Q 041936 226 --------------------------------------FYK--------------------------------EEKYEDV 235 (402)
Q Consensus 226 --------------------------------------~~~--------------------------------~~~~~~a 235 (402)
|.. ...+.++
T Consensus 281 ~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka 360 (652)
T KOG2376|consen 281 DLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKA 360 (652)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhh
Confidence 000 0001122
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041936 236 NKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLD--------EMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKK 307 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 307 (402)
.+++...-+....-...+.-..++.....|+++.|.+++. .+.+.+..|..+ ..+...+.+.++-+.|..
T Consensus 361 ~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~ 438 (652)
T KOG2376|consen 361 IELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASA 438 (652)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHH
Confidence 2222222221111113344556677788899999999999 555555555544 556666777777777777
Q ss_pred HHHHHHhC--CCCCCH----HhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 041936 308 FYRIMSNS--GLSPNS----SVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGL 381 (402)
Q Consensus 308 ~~~~m~~~--~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 381 (402)
++.+.+.- .-.+.. .++.-+...-.+.|.-++|...++++.+.. ++|..+...++.+|++. +++.|..+-..
T Consensus 439 vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 439 VLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 77766532 111122 233333334456799999999999999965 78999999999999886 67777776554
Q ss_pred H
Q 041936 382 V 382 (402)
Q Consensus 382 ~ 382 (402)
+
T Consensus 517 L 517 (652)
T KOG2376|consen 517 L 517 (652)
T ss_pred C
Confidence 4
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-05 Score=65.45 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=67.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----
Q 041936 188 IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCK---- 263 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---- 263 (402)
...|++.+++++|++..+... +......=+..+.+..+.+-|.+.++.|.+. .+..+.+-|.+++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 344555566666655555411 2222222333444555556666666666542 233344434333332
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 041936 264 LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGG 335 (402)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 335 (402)
.+.+.+|.-+|++|-+. ..|+..+.+-...++...|++++|..++++...+..+ ++.+...++.+-...|
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLG 255 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence 23455566666665543 3455555555555556666666666666666555332 3344433433333333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-05 Score=65.09 Aligned_cols=283 Identities=10% Similarity=-0.003 Sum_probs=202.0
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHH-H
Q 041936 108 QNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYN-R 186 (402)
Q Consensus 108 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~ 186 (402)
.+..-..-+...+...|++..|+.-|....+.+ +.+-.++-.-...|...|+...|+.-+...++. +||-..-. .
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQ 111 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHH
Confidence 344445556677888999999999999988654 333344444556788899999998888888643 78754322 2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC--CHhhH------------HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh
Q 041936 187 VIKAFCESSDSSSAYSILAEMDRKSIKP--NASSF------------GALVAGFYKEEKYEDVNKVLQMMERYGMKSGVS 252 (402)
Q Consensus 187 li~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 252 (402)
-...+.+.|.++.|..=|+..++..... ....+ ...+..+...|+...|+.....+.+.. +.|..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 2345678999999999999998863211 11111 223445667899999999999999876 67889
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh----HHHH-
Q 041936 253 MYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSV----YFTM- 327 (402)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l- 327 (402)
.|..-..+|...|++..|+.-++...+..-. +..++-.+-..+...|+.+.++...++..+. .||... |..+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence 9999999999999999999888777665333 5666667788888999999999999988874 455422 2221
Q ss_pred --------HHHHHccCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 328 --------VYFMCKGGDYETALGFCKESIAKGWVP---NFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 328 --------~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
+......+++.++.+-.+..++..... ....+..+-.++...|++.+|++...++.+..+.|+.++---
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 223345677888888887777764221 233455667778889999999999999999777777766443
Q ss_pred Hh
Q 041936 397 EA 398 (402)
Q Consensus 397 ~~ 398 (402)
..
T Consensus 348 Ae 349 (504)
T KOG0624|consen 348 AE 349 (504)
T ss_pred HH
Confidence 33
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.8e-05 Score=69.86 Aligned_cols=322 Identities=15% Similarity=0.076 Sum_probs=170.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC-CHHHHH
Q 041936 71 SHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRH-SVGAFN 149 (402)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~ 149 (402)
..-|...|..+.-++...|+++.+.+.|++... ......+.|..+...|...|.-..|+.+++.-......| +...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~-~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP-FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 335788899999999999999999999998873 334445667777888888888888888888755432123 333332
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHchhhcCCC---CCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhCC-CC
Q 041936 150 ALLLALT-IAKDYKEVKRVFIEFPKTYGIK---PDLDTYNRVIKAFCES-----------SDSSSAYSILAEMDRKS-IK 213 (402)
Q Consensus 150 ~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~---p~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~g-~~ 213 (402)
..-..|. +.+..++++.+-.+.+...+-+ .....|..+.-+|... ....++++.+++..+.+ ..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2222232 2344444444443332211100 0111222222222211 11233444444444332 12
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CC----------
Q 041936 214 PNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK-GM---------- 282 (402)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~---------- 282 (402)
|+...|.. --|+..++.+.|.+...+..+-+-..+...|..+.-.+...+++.+|+.+.+...+. |.
T Consensus 478 p~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 22222221 123334445555555555544433344444444444444444444444444433221 00
Q ss_pred --------------------------------------------------------------------------------
Q 041936 283 -------------------------------------------------------------------------------- 282 (402)
Q Consensus 283 -------------------------------------------------------------------------------- 282 (402)
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence
Q ss_pred ---C--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 283 ---K--PN------SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 283 ---~--p~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
. |+ ...|......+.+.+..++|...+.+..... ......|......+...|...+|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0 00 0012233344445555555555555554431 1233444555555666777777777777777654
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHH--HHHHHHhcCCCChhhHHHHH
Q 041936 352 WVPNFTTMKSLVTGLAGASKVSEAKE--LIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~ 397 (402)
+.++....++..++.+.|+..-|.. ++.++.+..|.|...|..+-
T Consensus 715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 4456677778888888887777777 88888887777777776553
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-08 Score=55.73 Aligned_cols=32 Identities=34% Similarity=0.806 Sum_probs=15.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 176 GIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 176 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-05 Score=69.64 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=53.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCCHHHHH
Q 041936 193 ESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG-VSMYNVRIHSLCKLRKCAEAK 271 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~ 271 (402)
..|++++|+..++.+... .+-|..........+.+.++.++|.+.++++.... |+ ....-.+.++|.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHH
Confidence 344555555555554443 12233333444445555555555555555555432 22 333344445555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041936 272 ALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKK 307 (402)
Q Consensus 272 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 307 (402)
.++++...... -|...|..|.++|...|+..++..
T Consensus 395 ~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 395 RILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHH
Confidence 55555544421 244555555555555555554443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-08 Score=55.47 Aligned_cols=30 Identities=37% Similarity=0.782 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041936 282 MKPNSVTYSHFIYGFCKDGNFEEAKKFYRI 311 (402)
Q Consensus 282 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 311 (402)
+.||..||+.+|.+|++.|++++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 334444444444444444444444444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.7e-06 Score=79.05 Aligned_cols=238 Identities=9% Similarity=0.045 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+...+..++..+...+++++|.++.+.... ..+....+|..+...+.+.++.+++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~-~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK-EHKKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 445566666666666666666666665442 2222233333333345555554443333 1222
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYE 233 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 233 (402)
......++..+..+...+.+ . .-+...+..+..+|-+.|+.++|..+++++++.. +-|+.+.|.+...|... +++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~-~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL-Y--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hcccccchhHHHHHHHHHHh-h--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 22223333222333333321 1 2233456667777777777777777777777665 44666777777777666 777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041936 234 DVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMS 313 (402)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 313 (402)
+|++++.+.... +...+++..+.++|.++....+. |...+- .+.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHHH
Confidence 777766665542 45556677777777777665221 222222 2222222
Q ss_pred hC-CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 314 NS-GLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 314 ~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
.. |..--..++..+-..|...++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 22 222234456666777888899999999999999876 446677777777775
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.7e-06 Score=67.05 Aligned_cols=119 Identities=8% Similarity=0.166 Sum_probs=71.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH-HccCC--HHHH
Q 041936 194 SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSL-CKLRK--CAEA 270 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a 270 (402)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445556666666555543 4456666666666666666666666666666654 34555555555543 45455 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 271 KALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 271 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
.+++++..+.+.. +...+..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666665333 4555666666666666666666666666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-06 Score=71.98 Aligned_cols=186 Identities=10% Similarity=-0.006 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCC-CC-CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCH---HH
Q 041936 73 LDRLAFSIAINKLSEANYFNGISQYLEELKTRP-DL-QNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSV---GA 147 (402)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~ 147 (402)
.....+......+...|++++|...++.+.... .. .....+..+..++...|++++|...++.+.+.. +.+. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 344566666667777777777777777766321 11 112345556667777777777777777776543 1111 13
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHchhhcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 041936 148 FNALLLALTIA--------KDYKEVKRVFIEFPKTYGIKPDL-DTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASS 218 (402)
Q Consensus 148 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 218 (402)
+..+..++... |+.++|.+.|+.+.+. .|+. ..+..+..... ... .. ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~------~~--------~~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHH------HH--------HHH
Confidence 44444445443 5667777777776544 2332 22211111100 000 00 001
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 219 FGALVAGFYKEEKYEDVNKVLQMMERYGM--KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
...+...+.+.|++++|...++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455667888888888888888876531 223467788888888889998888888887765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.7e-06 Score=66.43 Aligned_cols=159 Identities=14% Similarity=0.171 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 041936 185 NRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKL 264 (402)
Q Consensus 185 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 264 (402)
..+-..+...|+-+....+....... .+.|.......+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55555666667666666666654433 23355555567777777777777777777776655 67777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 041936 265 RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFC 344 (402)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 344 (402)
|+++.|..-|.+..+.... +...++.+...+.-.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777777765222 4556667777777777777777777777765432 4555566666667777777777765
Q ss_pred HHH
Q 041936 345 KES 347 (402)
Q Consensus 345 ~~~ 347 (402)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6e-05 Score=61.46 Aligned_cols=251 Identities=15% Similarity=0.158 Sum_probs=165.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
++.+.=.|.+..++..-...... +.+...-.-+-++|...|+...... ++ +. |-.|.......+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI-~~-~~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EI-KE-GKATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cc-cc-ccCChHHHHHHHHHHhhCcch
Confidence 34455567777776665554432 1233333345566777776654433 33 21 223444444444444444444
Q ss_pred hhHH-HHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 197 SSSA-YSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 197 ~~~a-~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
.+.- .++.+.+.......+......-...|++.|++++|++..+... +......=+..+.+..+++-|...++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 3344555555444444555555678899999999999887732 23334444556678889999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 276 EMLSKGMKPNSVTYSHFIYGFCK----DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 276 ~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
+|.+.. +..|.+-|..++.+ .+.+..|.-+|++|-++ ..|+..+.+....++...|++++|..++++...+.
T Consensus 162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 998752 56778878777765 45688999999999885 56889999999999999999999999999999986
Q ss_pred CCCCHHHHHHHHHHHHcCCChHH-HHHHHHHHHhc
Q 041936 352 WVPNFTTMKSLVTGLAGASKVSE-AKELIGLVKEK 385 (402)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 385 (402)
.-++.+...++..-...|...+ ..+.+.+....
T Consensus 238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 5567777777766666665544 44566666554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.4e-06 Score=66.21 Aligned_cols=158 Identities=11% Similarity=0.008 Sum_probs=97.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 041936 79 SIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIA 158 (402)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (402)
...-..+...|+-+....+..... ...+.+.......+....+.|++..|...|.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~-~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSA-IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhh-ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 444445555566666666665544 2334445555556666777777777777777766554 66777777777777777
Q ss_pred CCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041936 159 KDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKV 238 (402)
Q Consensus 159 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (402)
|+++.|..-|.+..+-. .-+....+.+...+.-.|+.+.|..++......+ .-|..+-..+.......|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 77777777766664432 2233446666666666777777777776666553 23555566666666667777777666
Q ss_pred HHH
Q 041936 239 LQM 241 (402)
Q Consensus 239 ~~~ 241 (402)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.9e-06 Score=65.08 Aligned_cols=100 Identities=10% Similarity=-0.003 Sum_probs=45.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 041936 292 FIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASK 371 (402)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (402)
....+...|++++|...|+....... .+...|..+..++...|++++|...|+...... +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 34444444455555544444444321 133444444444444555555555555444433 3344444444444444555
Q ss_pred hHHHHHHHHHHHhcCCCChhhH
Q 041936 372 VSEAKELIGLVKEKFTKNVDTW 393 (402)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~ 393 (402)
.++|...|+...+..|.+...|
T Consensus 108 ~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 108 PGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHHHHHHHHHHHHhCCCChHHH
Confidence 5555555555444433333333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.6e-05 Score=75.93 Aligned_cols=239 Identities=12% Similarity=0.113 Sum_probs=148.6
Q ss_pred CccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHH
Q 041936 38 SKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSI 117 (402)
Q Consensus 38 ~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 117 (402)
-...+..++..+...++++.|.++++......+..+....+..+ .+.+.++++.+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh-----------------hhh
Confidence 33445677888889999999999999777666555554444444 56667776665544 233
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 118 ILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
.......++.-+..+...|.+. .-+...+..+..+|-+.|+.+++..+|+++.+-. +-|+.+.|.+...|... +.
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hH
Confidence 3333444444444444455543 3444577788888889999999999999887653 55677888888888888 88
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 277 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (402)
++|.+++.+.... +...+++..+.++|.++.... +.+...+..+.+.....-
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~------------ 217 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHR------------ 217 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhh------------
Confidence 8888888877654 555667777777777777654 222222222222211110
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041936 278 LSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMC 332 (402)
Q Consensus 278 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 332 (402)
|..--..++-.+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 218 ---~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 ---EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ---ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11112334444555666666777777777777665332 4444555555554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0004 Score=62.40 Aligned_cols=154 Identities=7% Similarity=0.088 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041936 232 YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP-NSVTYSHFIYGFCKDGNFEEAKKFYR 310 (402)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 310 (402)
.+.....++++.......-..+|..+++...+..-+..|..+|.+..+.+..+ ++..+++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 34444555555443322234457778888888888999999999999887776 6667777777665 567888999998
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 041936 311 IMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN--FTTMKSLVTGLAGASKVSEAKELIGLVKEKFT 387 (402)
Q Consensus 311 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (402)
.-.+. ..-+.......+..+...++-..+..+|++....++.++ ...|..++..-..-|+...+.++-+++...++
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 76654 222334446677778888999999999999988855544 47899999998999999999998888777655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.4e-05 Score=73.41 Aligned_cols=211 Identities=12% Similarity=0.075 Sum_probs=156.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhh--cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 041936 79 SIAINKLSEANYFNGISQYLEELK--TRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALT 156 (402)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (402)
..+=..+.+.+.+..+..-+-++. .+..+.+...+..|.....+.|.+++|..+++...+.. +.+......+...+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~ 131 (694)
T PRK15179 53 QQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVK 131 (694)
T ss_pred HHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHH
Confidence 333344555555555555454443 24456678889999999999999999999999999875 666778888999999
Q ss_pred HcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 041936 157 IAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVN 236 (402)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 236 (402)
+.+++++|...+++..... +-+......+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|.
T Consensus 132 ~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSGG--SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred HhccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999987542 4455677788889999999999999999999843 445889999999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcC
Q 041936 237 KVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG----MKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~ 300 (402)
..|+...+.. .+....|+.++ +++..-..+++++.-.+ ..........++.-|....
T Consensus 209 ~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 209 DVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 9999998754 45555555544 33445556666665432 2233445566666665543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00014 Score=69.86 Aligned_cols=274 Identities=15% Similarity=0.163 Sum_probs=177.7
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 041936 73 LDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQ--NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNA 150 (402)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 150 (402)
.|++.-+..+.++...+-..+-+++++++.-.+... +...-+.++-... .-+..++.+..+++...+ .|+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-APD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-chh------
Confidence 355666777777777777777777777777333332 2333333433333 334556666666665433 232
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 151 LLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
+...+...+-+++|..+|++. ..+....+.|+. .-+..+.|.+.-++.. .+..|+.+..+-.+.|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf------~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF------DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh------cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcC
Confidence 333455666778888888765 235555555555 3455666666555442 3567888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041936 231 KYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYR 310 (402)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 310 (402)
...+|++-|-+. .|...|..+++...+.|.+++...++....+..-.|... ..++-+|++.++..+.++++
T Consensus 1119 ~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi- 1189 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI- 1189 (1666)
T ss_pred chHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-
Confidence 888888766443 456678889999999999999888888777776566554 46888888888887765544
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCh
Q 041936 311 IMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNV 390 (402)
Q Consensus 311 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 390 (402)
..||......+.+-|...|.++.|.-++.. ...|..|...++..|++..|...-++.. +.
T Consensus 1190 ------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn-----s~ 1249 (1666)
T KOG0985|consen 1190 ------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN-----ST 1249 (1666)
T ss_pred ------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc-----ch
Confidence 246777777777778888887777766643 3345566666677777777666555443 44
Q ss_pred hhHHHHHh
Q 041936 391 DTWNEIEA 398 (402)
Q Consensus 391 ~~~~~l~~ 398 (402)
.+|.-.-.
T Consensus 1250 ktWK~Vcf 1257 (1666)
T KOG0985|consen 1250 KTWKEVCF 1257 (1666)
T ss_pred hHHHHHHH
Confidence 55554433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00024 Score=63.62 Aligned_cols=317 Identities=15% Similarity=0.085 Sum_probs=203.1
Q ss_pred CccchHHHHHHHhcCCChhHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHH
Q 041936 38 SKDKTRAALTLLKSESNPEKILEICRAAA-LTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHS 116 (402)
Q Consensus 38 ~~~~~~~~l~~l~~~~~~~~al~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 116 (402)
.+..+..=.-.+.+.++++.|++--.... ..|.+ +..|+....++.-.|++++|..-|.+-+ ...+.+..++..+
T Consensus 35 nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w---~kgy~r~Gaa~~~lg~~~eA~~ay~~GL-~~d~~n~~L~~gl 110 (539)
T KOG0548|consen 35 NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW---AKGYSRKGAALFGLGDYEEAILAYSEGL-EKDPSNKQLKTGL 110 (539)
T ss_pred ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch---hhHHHHhHHHHHhcccHHHHHHHHHHHh-hcCCchHHHHHhH
Confidence 33344444455667788888887655443 33322 2478999999999999999999999988 4467778888888
Q ss_pred HHHHHhcCC---------------------------------------------------HHHHHHHHHHh-----HhCC
Q 041936 117 IILYGQANM---------------------------------------------------TEHAVRTFKEM-----DEHK 140 (402)
Q Consensus 117 i~~~~~~~~---------------------------------------------------~~~A~~~~~~~-----~~~~ 140 (402)
..++..... +..|.-.+... ...+
T Consensus 111 ~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~ 190 (539)
T KOG0548|consen 111 AQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASG 190 (539)
T ss_pred HHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccc
Confidence 887732200 00000000000 0000
Q ss_pred -------CCC------------C----------HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 041936 141 -------LRH------------S----------VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAF 191 (402)
Q Consensus 141 -------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 191 (402)
..| + ..-...+.++..+..++..|++-+....+. .-+..-++....+|
T Consensus 191 ~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el---~~~it~~~n~aA~~ 267 (539)
T KOG0548|consen 191 IEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL---ATDITYLNNIAAVY 267 (539)
T ss_pred cccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH---hhhhHHHHHHHHHH
Confidence 001 0 012334556666667777888887777543 33455566777788
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhh-------HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhH----------
Q 041936 192 CESSDSSSAYSILAEMDRKSIKPNASS-------FGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMY---------- 254 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------- 254 (402)
...|.+..+...-....+.|-. ...- +..+..+|.+.++++.+...|++.......|+...-
T Consensus 268 ~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~ 346 (539)
T KOG0548|consen 268 LERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKE 346 (539)
T ss_pred HhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH
Confidence 8888888887777776666522 2222 233445677788899999998887654434432211
Q ss_pred ---------------HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041936 255 ---------------NVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP 319 (402)
Q Consensus 255 ---------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 319 (402)
..-...+.+.|++..|...|.+++.... -|...|....-+|.+.|.+..|++-.+..++. .|
T Consensus 347 ~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p 423 (539)
T KOG0548|consen 347 AERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DP 423 (539)
T ss_pred HHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--Cc
Confidence 1123456678999999999999998853 37889999999999999999999988888875 33
Q ss_pred C-HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041936 320 N-SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGL 366 (402)
Q Consensus 320 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (402)
+ ...|..=..++....++++|.+.|.+..+.+ +.+......+.++.
T Consensus 424 ~~~kgy~RKg~al~~mk~ydkAleay~eale~d-p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 424 NFIKAYLRKGAALRAMKEYDKALEAYQEALELD-PSNAEAIDGYRRCV 470 (539)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 3 3445444555566678999999999998875 33333333333333
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.1e-05 Score=65.95 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=117.6
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 041936 225 GFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPN-SVTYSHFIYGFCKDGNFE 303 (402)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~ 303 (402)
.+...|++++|+..++.+.... +-|...+....+.+.+.++.++|.+.++++... .|+ ......+.+++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3557788999999999988764 455555666778899999999999999999987 555 556677888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
+|+.+++...... +-|+..|..|..+|...|+..++.....+ .+.-.|+++.|...+....
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 9999999988764 34788999999999999998888765543 4566788888888888888
Q ss_pred hcCCCChhhHH
Q 041936 384 EKFTKNVDTWN 394 (402)
Q Consensus 384 ~~~~~~~~~~~ 394 (402)
+....+..+|.
T Consensus 453 ~~~~~~~~~~a 463 (484)
T COG4783 453 QQVKLGFPDWA 463 (484)
T ss_pred HhccCCcHHHH
Confidence 87766666663
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-05 Score=72.27 Aligned_cols=139 Identities=14% Similarity=0.160 Sum_probs=100.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041936 222 LVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 301 (402)
.+.+......|.+|+.+++.++... .-..-|..+.+-|...|+++.|.++|.+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3455667788888888888887764 334457778888899999999988887532 34567788889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 041936 302 FEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGL 381 (402)
Q Consensus 302 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 381 (402)
|+.|.++-.+.. |.......|..-..-+-..|++.+|.+++-.. | .|+ ..|..|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 998888776654 33445566666666677788888888877433 3 343 356788888988888888765
Q ss_pred H
Q 041936 382 V 382 (402)
Q Consensus 382 ~ 382 (402)
-
T Consensus 876 ~ 876 (1636)
T KOG3616|consen 876 H 876 (1636)
T ss_pred h
Confidence 3
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.8e-05 Score=70.02 Aligned_cols=294 Identities=14% Similarity=0.124 Sum_probs=134.3
Q ss_pred CCCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHH
Q 041936 36 LTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAH 115 (402)
Q Consensus 36 ~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 115 (402)
..+.+.--.+++++...|.|-.|..... .......|......+..++.+..-+++|-++|+++.. +..
T Consensus 612 k~sdgd~laaiqlyika~~p~~a~~~a~---n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dk 679 (1636)
T KOG3616|consen 612 KESDGDGLAAIQLYIKAGKPAKAARAAL---NDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDK 679 (1636)
T ss_pred ccccCccHHHHHHHHHcCCchHHHHhhc---CHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHH
Confidence 3445555567777777777776665431 1112233555666666666766667777777776651 112
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc
Q 041936 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAF-NALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES 194 (402)
Q Consensus 116 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 194 (402)
.+.+|.+.+-+.+|+++-+-.- +..+.+. ......+...|+++.|+..|-+.. ..-..+.+....
T Consensus 680 ale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~----------~~~kaieaai~a 745 (1636)
T KOG3616|consen 680 ALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN----------CLIKAIEAAIGA 745 (1636)
T ss_pred HHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhh
Confidence 2333333333444444433211 1111111 112222333444444444443321 011223344444
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 041936 195 SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALL 274 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (402)
+.|.+|+.+++.+.++.. -..-|..+...|...|+++.|+++|-+.. .++-.|.+|.+.|+++.|.++-
T Consensus 746 kew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHH
Confidence 555555555555544421 22334445555555555555555553321 1334455555555555555544
Q ss_pred HHHHHCCCCCCHHHHHHHH--------------------------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 041936 275 DEMLSKGMKPNSVTYSHFI--------------------------YGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMV 328 (402)
Q Consensus 275 ~~~~~~~~~p~~~~~~~l~--------------------------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 328 (402)
.+.. |.......|..-. ..|-+.|..+..+++..+-... .-..|...+.
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~ 889 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFA 889 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHH
Confidence 4332 1222233333333 3344444444433333322111 1123444455
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 041936 329 YFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIG 380 (402)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 380 (402)
.-|-..|+...|..-|-+.. -|.+-++.|-..+.|++|.++-+
T Consensus 890 ~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 890 KELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 55555666666665554332 23444555666666666665543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-05 Score=61.48 Aligned_cols=90 Identities=11% Similarity=-0.080 Sum_probs=36.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 041936 188 IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKC 267 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 267 (402)
...+...|++++|...|+...... +.+...+..+..++...|++++|...|++..... +.+...+..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 333334444444444444443332 2233344444444444444444444444444332 23333344444444444444
Q ss_pred HHHHHHHHHHHH
Q 041936 268 AEAKALLDEMLS 279 (402)
Q Consensus 268 ~~a~~~~~~~~~ 279 (402)
++|...|+...+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00011 Score=59.43 Aligned_cols=186 Identities=12% Similarity=0.103 Sum_probs=89.8
Q ss_pred ChhHHHHHHHHhhcCC--C-CCCCHH-HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 041936 54 NPEKILEICRAAALTP--E-SHLDRL-AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHA 129 (402)
Q Consensus 54 ~~~~al~~~~~~~~~~--~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 129 (402)
++++.++++..+.... + ..++.. .|..++-+....|+.+.|...++.+..+- +.+..+-..-...+-..|.+++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 5556666555443211 1 222221 23344444455566666666666655322 33332222222224445566666
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
+++++.+.+.+ +.|..++-.-+.+.-..|+--+|++-+.+..+. +.-|...|.-+...|...|++++|.-.++++.-
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 66666665554 455555555555555555555555555555442 244555666666666666666666666665554
Q ss_pred CCCCCCHhhHHHHHHHHhccC---CHHHHHHHHHHHHH
Q 041936 210 KSIKPNASSFGALVAGFYKEE---KYEDVNKVLQMMER 244 (402)
Q Consensus 210 ~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 244 (402)
.. +.+...+..+...+.-.| +.+.+.+.|.+..+
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 32 223333344444333222 23344445554444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0016 Score=62.09 Aligned_cols=233 Identities=16% Similarity=0.134 Sum_probs=155.1
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH
Q 041936 41 KTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINK--LSEANYFNGISQYLEELKTRPDLQNERFHAHSII 118 (402)
Q Consensus 41 ~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 118 (402)
.++.+...+. .+++..|++.......+.+..+ |..++.+ +.+.|+.++|..+++.....+ ..+..+...+-.
T Consensus 12 r~rpi~d~ld-~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~ 85 (932)
T KOG2053|consen 12 RLRPIYDLLD-SSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQN 85 (932)
T ss_pred HHhHHHHHhh-hHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHH
Confidence 3444555554 4578889998888876665554 4444443 567899999999998887433 348888989999
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC--
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD-- 196 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~-- 196 (402)
+|.+.|+.++|..+|+...+. .|+..-...+..+|.+.+++.+-.+.=-++-+. .+-....+=.+++.+.+.-.
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~ 161 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSE 161 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCC
Confidence 999999999999999998876 567777778888899888776543333333232 13344555555555544311
Q ss_pred --------hhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhccCCHHHHHHHHH-HHHHCCCCCChhhHHHHHHHHHccCC
Q 041936 197 --------SSSAYSILAEMDRKS-IKPNASSFGALVAGFYKEEKYEDVNKVLQ-MMERYGMKSGVSMYNVRIHSLCKLRK 266 (402)
Q Consensus 197 --------~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (402)
..-|.+.++.+.+.+ .--+..-...-...+-..|++++|.+++. ...+.-..-+...-+.-+..+...++
T Consensus 162 ~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~ 241 (932)
T KOG2053|consen 162 NELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNR 241 (932)
T ss_pred cccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcC
Confidence 234566667666554 22222223333445567888999999994 44333333344445567788888999
Q ss_pred HHHHHHHHHHHHHCCCC
Q 041936 267 CAEAKALLDEMLSKGMK 283 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~ 283 (402)
+.+..++-.++...|..
T Consensus 242 w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 242 WQELFELSSRLLEKGND 258 (932)
T ss_pred hHHHHHHHHHHHHhCCc
Confidence 99999999999888543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0018 Score=61.76 Aligned_cols=226 Identities=11% Similarity=0.031 Sum_probs=153.6
Q ss_pred HHhcCCcchHHHHHHHhh-cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 041936 85 LSEANYFNGISQYLEELK-TRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKE 163 (402)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 163 (402)
....+++..|.....++. +.|..+-..++.++. ..+.|+.++|..+++.....+ ..|..|...+-.+|.+.++.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 345678889998888877 333333334444444 779999999999999887766 4488999999999999999999
Q ss_pred HHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC----------HH
Q 041936 164 VKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK----------YE 233 (402)
Q Consensus 164 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------~~ 233 (402)
|..+|++.... -|+......+..+|.+.+++.+-.+.--+|-+. .+-+...|=.+++.+...-. ..
T Consensus 96 ~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 96 AVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999998644 677777777888888888887655554444443 33344444445554433211 23
Q ss_pred HHHHHHHHHHHCC-CCCChhhHHHHHHHHHccCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041936 234 DVNKVLQMMERYG-MKSGVSMYNVRIHSLCKLRKCAEAKALLD-EMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRI 311 (402)
Q Consensus 234 ~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 311 (402)
-|.+.++.+.+.+ -.-+..-.-.....+...|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4556666666544 11222222233445567789999999994 444443333445555667788889999999999999
Q ss_pred HHhCCC
Q 041936 312 MSNSGL 317 (402)
Q Consensus 312 m~~~~~ 317 (402)
+...|.
T Consensus 252 Ll~k~~ 257 (932)
T KOG2053|consen 252 LLEKGN 257 (932)
T ss_pred HHHhCC
Confidence 998864
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0012 Score=59.45 Aligned_cols=321 Identities=11% Similarity=0.119 Sum_probs=185.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 041936 71 SHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNA 150 (402)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 150 (402)
.+-|..+|+.+|.-+... .++++.+.++++. ...+.....|..-|..-.+..+++.+..+|.+.+.. ..+...|..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~-~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~l 91 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLV-NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKL 91 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHH
Confidence 345889999999987777 9999999999998 667888889999999999999999999999998765 455677777
Q ss_pred HHHHHHHc-CCH----HHHHHHHHHchhhcCCCCCH-HHHHHHHHH---------HHhcCChhHHHHHHHHHHhC-----
Q 041936 151 LLLALTIA-KDY----KEVKRVFIEFPKTYGIKPDL-DTYNRVIKA---------FCESSDSSSAYSILAEMDRK----- 210 (402)
Q Consensus 151 l~~~~~~~-~~~----~~a~~~~~~~~~~~~~~p~~-~~~~~li~~---------~~~~~~~~~a~~~~~~~~~~----- 210 (402)
.++--.+. ++. +...+.|+-.....|..+-. ..|+..+.- +..+.+++...++|++++..
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 66543322 222 22233333333443433221 123332221 22222333444444444332
Q ss_pred ---------------------------------------------CCCCCHhh---------------HHHHHHH-----
Q 041936 211 ---------------------------------------------SIKPNASS---------------FGALVAG----- 225 (402)
Q Consensus 211 ---------------------------------------------g~~~~~~~---------------~~~l~~~----- 225 (402)
|+..+..+ |..+|.-
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 11100000 1111100
Q ss_pred --------------------------------------------HhccCC-------HHHHHHHHHHHHHCCCCCChhhH
Q 041936 226 --------------------------------------------FYKEEK-------YEDVNKVLQMMERYGMKSGVSMY 254 (402)
Q Consensus 226 --------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 254 (402)
+...|+ .+++.++++.....-...+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 11222222222111111111112
Q ss_pred HHHHHHHH---ccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHH
Q 041936 255 NVRIHSLC---KLRKCAEAKALLDEMLSK-GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP-NSSVYFTMVY 329 (402)
Q Consensus 255 ~~ll~~~~---~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~ 329 (402)
..+...-- ..+..+...++++++... ...|+ -+|...|+.-.+..-+..|..+|.+..+.+..+ +...+++++.
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 21111100 001234445555555543 22332 356777787788888999999999999987777 6777788887
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc-CCC--ChhhHHHHHh
Q 041936 330 FMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK-FTK--NVDTWNEIEA 398 (402)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~--~~~~~~~l~~ 398 (402)
.|| .++.+-|.++|+--+++ +..++..-...+..+...++-..+..+|+++... .++ ....|..+++
T Consensus 411 y~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 765 67889999999876664 2344555566778888888888999999988876 232 3456776654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-05 Score=59.83 Aligned_cols=97 Identities=12% Similarity=0.045 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
.....+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|..+++...+.. +.+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 344455555666666666666666665544 4455666666666666666666666666654321 3344555555666
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 041936 191 FCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~ 210 (402)
+...|++++|.+.|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.6e-05 Score=69.44 Aligned_cols=258 Identities=13% Similarity=0.133 Sum_probs=139.4
Q ss_pred CHHHHHHHHH--HHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC-C--------CC
Q 041936 74 DRLAFSIAIN--KLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH-K--------LR 142 (402)
Q Consensus 74 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~--------~~ 142 (402)
|..|-..+++ .|...|+.+.|.+-++.++ +..+|..+..+|.+..+.|-|.-.+-.|... | ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4455555554 3566688888876666554 4467888888888888888887776666431 1 01
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 041936 143 HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGAL 222 (402)
Q Consensus 143 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 222 (402)
++ .+-....-.....|.+++|..+|.+. ++ |..|=+.|...|.|++|.++-+.=.+..+ ..||...
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~c-kR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~y 864 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQC-KR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNY 864 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHH-HH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHH
Confidence 21 11112223345678888888888887 43 55566677778888888887664433222 2456666
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 041936 223 VAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNF 302 (402)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 302 (402)
..-+-..++.+.|++.|++.... --.++..|. .++.....+.+++. |...|..-.......|+.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEM 928 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccch
Confidence 66666777888888777654211 111111110 12222222222222 334444444444455555
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 041936 303 EEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLV 382 (402)
Q Consensus 303 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 382 (402)
+.|+.+|..... |-++++..|-.|+.++|-++-++- | |....-.|.+.|-..|++.+|..+|.+.
T Consensus 929 daAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 929 DAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555555554432 334444445555555555544322 1 2333334445555555555555555443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00038 Score=56.50 Aligned_cols=186 Identities=12% Similarity=0.055 Sum_probs=111.1
Q ss_pred CcchHHHHHHHhh---cCC-CCCch-HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 041936 90 YFNGISQYLEELK---TRP-DLQNE-RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEV 164 (402)
Q Consensus 90 ~~~~a~~~~~~~~---~~~-~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 164 (402)
+.++..+++.++. ..+ ..++. .++..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 4555666665555 111 11221 345555666677788888888888876653 33333322223334556778888
Q ss_pred HHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 165 KRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 165 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
+++|+.+.+.. +.|..++.-=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 106 ~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 88888776543 445556655555555566666777777776665 455777788888888888888888777777776
Q ss_pred CCCCCChhhHHHHHHHHHcc---CCHHHHHHHHHHHHHC
Q 041936 245 YGMKSGVSMYNVRIHSLCKL---RKCAEAKALLDEMLSK 280 (402)
Q Consensus 245 ~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~ 280 (402)
.. |.+...+..+...+.-. .+.+-+.++|.+..+.
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 54 23333334444433322 3455666777766655
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-05 Score=59.65 Aligned_cols=94 Identities=18% Similarity=0.121 Sum_probs=44.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
...+...+...|++++|.+.|+.+...+. .+...+..+...+...|++++|..+++...+.+ ..+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 33444444455555555555555544321 134444444555555555555555555544432 1123344444444555
Q ss_pred cCChHHHHHHHHHHHh
Q 041936 334 GGDYETALGFCKESIA 349 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~ 349 (402)
.|++++|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555554444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00016 Score=69.47 Aligned_cols=333 Identities=11% Similarity=0.004 Sum_probs=179.2
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhc-CCCCCchHHHHHHHHHHHhcCCHHHH
Q 041936 51 SESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKT-RPDLQNERFHAHSIILYGQANMTEHA 129 (402)
Q Consensus 51 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A 129 (402)
...+..+|..-|+.+-.-.. .|..........+++..+++.|..+.-.... .+......-|....-.|.+.++...|
T Consensus 504 d~~Dm~RA~kCf~KAFeLDa--tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~a 581 (1238)
T KOG1127|consen 504 DSDDMKRAKKCFDKAFELDA--TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGA 581 (1238)
T ss_pred HHHHHHHHHHHHHHHhcCCc--hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhH
Confidence 33355566666655543322 2456677777777777777777777322221 11111112222334456677778888
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHH
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLD-TYNRVIKAFCESSDSSSAYSILAEMD 208 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~ 208 (402)
+.-|+...+.. +.|...|..++.+|...|++..|.++|++.. -+.|+.. .---....-+..|.+.+|+..+....
T Consensus 582 V~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs---~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 582 VCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS---LLRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH---hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888777665 6677788888888888888888888887774 2244432 11122333456788888888777665
Q ss_pred hC------CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH-------HCCCCCChhhHHHHHHHH--------------
Q 041936 209 RK------SIKPNASSFGALVAGFYKEEKYEDVNKVLQMME-------RYGMKSGVSMYNVRIHSL-------------- 261 (402)
Q Consensus 209 ~~------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~ll~~~-------------- 261 (402)
.. +..--..++-.+...+...|-..++..+++.-+ ......+...|-.+-++|
T Consensus 658 ~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h 737 (1238)
T KOG1127|consen 658 YAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMH 737 (1238)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHH
Confidence 42 111112233333333333333333333333221 111111122221111111
Q ss_pred -----H----ccCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC----CHHHHHHHHHHHHhCCCC
Q 041936 262 -----C----KLRKC---A---EAKALLDEMLSKGMKPNSVTYSHFIYGFCK----DG----NFEEAKKFYRIMSNSGLS 318 (402)
Q Consensus 262 -----~----~~~~~---~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~----~~~~a~~~~~~m~~~~~~ 318 (402)
. ..+.. + -+.+.+-.-.+ ...+..+|..++..|.+ .+ +...|+..+...++.. .
T Consensus 738 ~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-a 814 (1238)
T KOG1127|consen 738 YLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-A 814 (1238)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-h
Confidence 1 11111 1 01111100000 01123334444433332 11 2235667777666542 2
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHH
Q 041936 319 PNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWN 394 (402)
Q Consensus 319 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 394 (402)
-+..+|+.|... ...|.+.-+...|-+-.... +.+..+|..+...+.+..+++-|...|...+...|.|...|-
T Consensus 815 nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~Wl 888 (1238)
T KOG1127|consen 815 NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWL 888 (1238)
T ss_pred ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHH
Confidence 356667766555 66677777777776655543 556778888888889999999999999999988888888874
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.8e-05 Score=68.38 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=79.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 041936 256 VRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGG 335 (402)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 335 (402)
.++..+...++++.|..+|+++.+.. |+ ....+++.+...++..+|.+++++...... -+......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence 34445555667777777777777662 33 333466666666677777777777765422 24555555566677777
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 336 DYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
+.+.|..+.+++.+.. +-+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777653 4455677777777777777777777777654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00077 Score=64.95 Aligned_cols=184 Identities=13% Similarity=0.018 Sum_probs=122.9
Q ss_pred cchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 041936 91 FNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIE 170 (402)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 170 (402)
...+...|-+.. +.++.-...|..+...|....+...|.+.|++..+.+ ..+...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~al-rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRAL-RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 444444443333 2233334557777777888778888999999888776 56777788888999999999999888433
Q ss_pred chhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 041936 171 FPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG 250 (402)
Q Consensus 171 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 250 (402)
..+......-...|.-..-.|.+.++..+|+..|+...+.. +.|...|..++.+|...|++..|.++|.+..... |+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH
Confidence 32211000111223334445677888889999999888775 4477888999999999999999999998887653 33
Q ss_pred h-hhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 041936 251 V-SMYNVRIHSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 251 ~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (402)
. ..---...+-+..|.+.++...+.....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2 2212222344567888888888877654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.9e-05 Score=68.30 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+-..-..++..+...++++.|.++++++.... | .....++..+...++-.+|.+++++..+.. +.+......-..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455556666667778888888888877432 2 244456777777777888888888877654 556666777777
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.+.+.++.+.|+.+.+++.+. .|+ -.+|..|..+|.+.|+++.|+..++.+.-
T Consensus 243 fLl~k~~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 788888888888888877643 444 45788888888888888888887776653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.5e-05 Score=68.94 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=99.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhH
Q 041936 177 IKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK--SIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMY 254 (402)
Q Consensus 177 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 254 (402)
.+-+......++..+....+++.+..++.+.... ....-..|..++++.|.+.|..++++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3556777888888888888888899988888765 23233456678999999999999999999988889999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041936 255 NVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKD 299 (402)
Q Consensus 255 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 299 (402)
|.+++.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999888877666777777767766665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.9e-05 Score=57.04 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=8.5
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 041936 190 AFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~ 209 (402)
.+...|++++|...|+....
T Consensus 57 ~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 57 AAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHh
Confidence 33344444444444444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.6e-06 Score=47.40 Aligned_cols=33 Identities=30% Similarity=0.661 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEMDRKSIKPN 215 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~ 215 (402)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455566666666666666666666655555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.7e-06 Score=47.37 Aligned_cols=31 Identities=45% Similarity=0.822 Sum_probs=12.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 284 (402)
|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3444444444444444444444444444333
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.1e-05 Score=54.71 Aligned_cols=108 Identities=12% Similarity=0.057 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCCHHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS--PNSSVYFTMVYFMCKGGDYETALGFCKESIAKGW--VPNFTTMKSLV 363 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 363 (402)
++..+...+...|++++|.+.|..+...... .....+..+..++.+.|++++|...++.+..... +.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555666666777777777666654211 1123445566666677777777777776665421 11234555566
Q ss_pred HHHHcCCChHHHHHHHHHHHhcCCCChhhHHH
Q 041936 364 TGLAGASKVSEAKELIGLVKEKFTKNVDTWNE 395 (402)
Q Consensus 364 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 395 (402)
.++.+.|+.++|.+.++++.+..|.+..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 66667777777777777777666666555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00013 Score=56.07 Aligned_cols=85 Identities=11% Similarity=-0.028 Sum_probs=34.0
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC
Q 041936 118 ILYGQANMTEHAVRTFKEMDEHKLRHSV--GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS 195 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 195 (402)
..+...|++++|...|+........+.. .....+...+...|++++|+..++... .. ......+......|...|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~--~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DE--AFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-Cc--chHHHHHHHHHHHHHHCC
Confidence 3444445555555555444443311111 122223344444444444444444331 11 122223334444444444
Q ss_pred ChhHHHHHHH
Q 041936 196 DSSSAYSILA 205 (402)
Q Consensus 196 ~~~~a~~~~~ 205 (402)
++++|...|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 4444444444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.5e-06 Score=46.56 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS 318 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 318 (402)
+|+.++.+|++.|+++.|.++|+.|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.1e-05 Score=54.39 Aligned_cols=75 Identities=25% Similarity=0.476 Sum_probs=38.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041936 223 VAGFYKEEKYEDVNKVLQMMERYGM-KSGVSMYNVRIHSLCKLR--------KCAEAKALLDEMLSKGMKPNSVTYSHFI 293 (402)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 293 (402)
|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+|++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555555544321 2234455555555555555555555555
Q ss_pred HHHH
Q 041936 294 YGFC 297 (402)
Q Consensus 294 ~~~~ 297 (402)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.1e-05 Score=67.94 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=102.7
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 041936 210 KSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG--MKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSV 287 (402)
Q Consensus 210 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 287 (402)
.+.+.+.....++++.+....+.+.+..++.+..... ...-..|..++++.|.+.|..++++++++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3456678888889999888888999999998887652 22334455699999999999999999999988999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKG 334 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 334 (402)
+++.+|+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998887766777777666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.7e-06 Score=46.00 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 041936 252 SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 284 (402)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345555555555555555555555555555554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00038 Score=51.36 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCC-CCCHHHHHHHHHHH
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKL--RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGI-KPDLDTYNRVIKAF 191 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~ 191 (402)
.....+.+.|++++|.+.|..+.+... +.....+..+..++.+.|+++.|...|+.+.....- +.....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444445555555555555443220 001223334444555555555555555544332110 01123344444444
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 041936 192 CESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~ 210 (402)
.+.|+.++|.+.++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 4455555555555544443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00018 Score=50.70 Aligned_cols=76 Identities=14% Similarity=0.289 Sum_probs=40.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccC--------ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSGL-SPNSSVYFTMVYFMCKGG--------DYETALGFCKESIAKGWVPNFTTMKSLV 363 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (402)
|..|...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+++.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333344555555555555555555 455555555555444321 2334555666666666666666666666
Q ss_pred HHHHc
Q 041936 364 TGLAG 368 (402)
Q Consensus 364 ~~~~~ 368 (402)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 65544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00042 Score=59.69 Aligned_cols=130 Identities=8% Similarity=0.131 Sum_probs=57.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 253 MYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYG-FCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
+|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... |...++.+.|.++|+...+. ...+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444555555555555555555554321 1122233322222 11233444455555555543 222344455555555
Q ss_pred HccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 332 CKGGDYETALGFCKESIAKGWVPN---FTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
.+.|+.+.|..+|++.+.. +.++ ...|...++.-.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443 1111 135555555555555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00021 Score=49.86 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC
Q 041936 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS 195 (402)
Q Consensus 116 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 195 (402)
+...+...|++++|...++...+.. +.+...+..+..++...+++++|.+.++...+.. +.+..++..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHHH
Confidence 3344444555555555555544432 2233444444455555555555555555443221 222234444444455555
Q ss_pred ChhHHHHHHHHHH
Q 041936 196 DSSSAYSILAEMD 208 (402)
Q Consensus 196 ~~~~a~~~~~~~~ 208 (402)
+++.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555544443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0023 Score=55.39 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-hHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 289 YSHFIYGFCKDGNFEEAKKFYRIMSNSGLS-----PNSS-VYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
+..+...+.+.|++++|.++|+++...-.. .+.. .|...+-++...||...|.+.+++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445555555555555555555443111 1111 112222233444555555555555543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00024 Score=49.59 Aligned_cols=91 Identities=22% Similarity=0.225 Sum_probs=43.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 041936 292 FIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASK 371 (402)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (402)
+...+...|++++|..++....+... .+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 34444445555555555555544321 122334444444555555555555555554432 2233444455555555555
Q ss_pred hHHHHHHHHHHHh
Q 041936 372 VSEAKELIGLVKE 384 (402)
Q Consensus 372 ~~~a~~~~~~~~~ 384 (402)
+++|...++...+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0044 Score=53.60 Aligned_cols=93 Identities=15% Similarity=0.178 Sum_probs=50.2
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHH----CCCCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-----CCHH-H
Q 041936 222 LVAGFYKE-EKYEDVNKVLQMMER----YGMKS--GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMK-----PNSV-T 288 (402)
Q Consensus 222 l~~~~~~~-~~~~~a~~~~~~~~~----~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~-~ 288 (402)
+...|... |++++|.+.|++..+ .+ .+ -..++..+...+.+.|++++|.++|++....-.. .+.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 33445555 667777766665543 12 11 1234555666777777777777777777654222 1111 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 289 YSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
|...+-++...||...|.+.+++....
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 233344556677777888877777654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0004 Score=55.32 Aligned_cols=86 Identities=20% Similarity=0.320 Sum_probs=51.6
Q ss_pred CCHhhHHHHHHHHh-----ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC----------------CHHHHHH
Q 041936 214 PNASSFGALVAGFY-----KEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLR----------------KCAEAKA 272 (402)
Q Consensus 214 ~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~~ 272 (402)
.+..+|..++..|. +.|..+-....+..|.+.|+..|..+|+.|++.+=+.. +-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 35666666666664 34667777777777777777777777877777765421 2233445
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 041936 273 LLDEMLSKGMKPNSVTYSHFIYGFCKD 299 (402)
Q Consensus 273 ~~~~~~~~~~~p~~~~~~~l~~~~~~~ 299 (402)
++++|...|+-||..|+..+++.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 555555555555555555555544443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.9e-05 Score=42.47 Aligned_cols=29 Identities=28% Similarity=0.622 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEMDRKS 211 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g 211 (402)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.016 Score=50.69 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 252 SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
.+.+..|.-+...|+...|.++-.+.. .||...|...+.+++..++|++-.++... +-++..|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345556777778899888888877664 47899999999999999999988776432 12457789999999
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 041936 332 CKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKEL 378 (402)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 378 (402)
.+.|...+|..++.++ + +..-+..|.+.|++.+|.+.
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 9999999999888762 2 13456788899999888776
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.6e-05 Score=41.91 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=10.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (402)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33333333333333333333333333
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00041 Score=59.72 Aligned_cols=133 Identities=8% Similarity=0.040 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHh-cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQ-ANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA 154 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (402)
.+|..++..+-+.+..+.|..+|.... .....+..+|......-.. .++.+.|..+|+...+. .+.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~-~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRAR-KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666777777777766 2233344555555544333 45555577777766654 25566666666777
Q ss_pred HHHcCCHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 155 LTIAKDYKEVKRVFIEFPKTYGIKP-DLDTYNRVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
+...++.+.|..+|++.+....... ....|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777776654311111 1235666666666666666666666666553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00097 Score=50.70 Aligned_cols=95 Identities=11% Similarity=-0.038 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 041936 79 SIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIA 158 (402)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (402)
-.+...+...|++++|.++|+.+. .-++.+...|..+..++-..|++++|+..|......+ +.++..+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~-~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLT-IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 334444556677777777776666 3345555666666666667777777777777666655 45666666666677777
Q ss_pred CCHHHHHHHHHHchhhc
Q 041936 159 KDYKEVKRVFIEFPKTY 175 (402)
Q Consensus 159 ~~~~~a~~~~~~~~~~~ 175 (402)
|+.+.|.+-|+..+...
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 77777777766665443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0016 Score=51.65 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 184 YNRVIKAFCESSDSSSAYSILAEMDRKSIKPN--ASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444444444444444444433221111 22344444444444444444444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0082 Score=50.43 Aligned_cols=58 Identities=7% Similarity=0.139 Sum_probs=42.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 326 TMVYFMCKGGDYETALGFCKESIAK--GWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
.+.+.|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556677788888888888888775 434455666677788888888888887776554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.5e-05 Score=52.98 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 041936 300 GNFEEAKKFYRIMSNSGL-SPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKEL 378 (402)
Q Consensus 300 ~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 378 (402)
|+++.|+.+++++.+... .++...+..+..+|.+.|++++|..++++ .+.+ ..+......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455555555555554422 11233333345555555555555555554 2111 11223333345555555555555555
Q ss_pred HHH
Q 041936 379 IGL 381 (402)
Q Consensus 379 ~~~ 381 (402)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00079 Score=60.18 Aligned_cols=93 Identities=17% Similarity=0.058 Sum_probs=76.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 041936 257 RIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGD 336 (402)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 336 (402)
-...+...|++++|++.|+++++.... +...|..+..+|...|++++|+..+++.+.... .+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence 345566789999999999999887433 567788888899999999999999999988642 256778888889999999
Q ss_pred hHHHHHHHHHHHhCC
Q 041936 337 YETALGFCKESIAKG 351 (402)
Q Consensus 337 ~~~a~~~~~~~~~~~ 351 (402)
+++|...|++.++.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00097 Score=52.73 Aligned_cols=61 Identities=11% Similarity=-0.045 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 184 YNRVIKAFCESSDSSSAYSILAEMDRKSIKP--NASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
|..+...+...|++++|...|++.......+ ...++..+..++...|++++|+..++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444455555555554444331111 112444444445555555555555544443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0047 Score=47.92 Aligned_cols=160 Identities=11% Similarity=0.010 Sum_probs=112.8
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 041936 42 TRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYG 121 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 121 (402)
.+.+...+.+.-||++.++-..... ..-|+...--.+...+.+.|+..+|...|++........+..+...+.++..
T Consensus 59 a~~~~~a~~q~ldP~R~~Rea~~~~---~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf 135 (251)
T COG4700 59 AHTLLMALQQKLDPERHLREATEEL---AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF 135 (251)
T ss_pred hHHHHHHHHHhcChhHHHHHHHHHH---hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH
Confidence 3456666777778887765544332 3345566667788888999999999999999887777788888888888888
Q ss_pred hcCCHHHHHHHHHHhHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHH
Q 041936 122 QANMTEHAVRTFKEMDEHKL-RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSA 200 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a 200 (402)
..+++..|...++++-+.+. ..++.+.-.+.+.+...|....|..-|+....- -|+...-......+.+.|+.+++
T Consensus 136 a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 136 AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHH
Confidence 99999999999998876531 112334456677888888888888888887533 56665555555556667766665
Q ss_pred HHHHHHH
Q 041936 201 YSILAEM 207 (402)
Q Consensus 201 ~~~~~~~ 207 (402)
..-+.++
T Consensus 213 ~aq~~~v 219 (251)
T COG4700 213 NAQYVAV 219 (251)
T ss_pred HHHHHHH
Confidence 5444333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.018 Score=48.46 Aligned_cols=57 Identities=11% Similarity=-0.088 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 041936 291 HFIYGFCKDGNFEEAKKFYRIMSNS--GLSPNSSVYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
.+..-|.+.|.+..|..-++.+++. +..........++.+|...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3455566777777777777777765 23333455566667777777777777665544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=50.27 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHhHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041936 123 ANMTEHAVRTFKEMDEHKLR-HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAY 201 (402)
Q Consensus 123 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 201 (402)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++.. +.. +.+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-KLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-THH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-CCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35555555555555544311 12333334555555556666655555541 111 111222333455555555555555
Q ss_pred HHHHH
Q 041936 202 SILAE 206 (402)
Q Consensus 202 ~~~~~ 206 (402)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00081 Score=60.12 Aligned_cols=91 Identities=12% Similarity=-0.034 Sum_probs=62.3
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041936 82 INKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY 161 (402)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (402)
...+...|++++|++.++++.. ..+.+...+..+..+|...|++++|+..++...+.+ +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~-~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID-LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 3445566777777777777763 344556666667777777777777777777777665 45666677777777777777
Q ss_pred HHHHHHHHHchhh
Q 041936 162 KEVKRVFIEFPKT 174 (402)
Q Consensus 162 ~~a~~~~~~~~~~ 174 (402)
++|+..|++.++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0028 Score=50.30 Aligned_cols=87 Identities=3% Similarity=-0.031 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRH--SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI 188 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 188 (402)
..+..+...+...|++++|...|++..+.+..+ ....+..+..++.+.|++++|...+++..+.. +-+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 344555555666666666666666665432111 12455566666666666666666666654321 22334444555
Q ss_pred HHHHhcCChhH
Q 041936 189 KAFCESSDSSS 199 (402)
Q Consensus 189 ~~~~~~~~~~~ 199 (402)
..+...|+...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 55555555433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0039 Score=54.46 Aligned_cols=257 Identities=12% Similarity=-0.008 Sum_probs=127.5
Q ss_pred HHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 041936 85 LSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEV 164 (402)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 164 (402)
+-+..++..|++.+...++. .+.+...|..-+..+...|++++|.--.++-.+.. +-........-.++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~-~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDM-CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHh-CccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHH
Confidence 44455666666666666632 33445556666666777777777766665544322 11122222333333334444444
Q ss_pred HHHHH---------------HchhhcCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 041936 165 KRVFI---------------EFPKTYGIKPDLDTYNRVI-KAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK 228 (402)
Q Consensus 165 ~~~~~---------------~~~~~~~~~p~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 228 (402)
.+.++ .......-+|...+|..+- .++.-.|+.++|.+.--..++.. ..+......=..++.-
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYY 215 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccccccc
Confidence 43332 2211111223334444332 34445677777766665555442 1122222222233445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHH-------------HHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHHHHHHH
Q 041936 229 EEKYEDVNKVLQMMERYGMKSGVSMYN-------------VRIHSLCKLRKCAEAKALLDEMLSK---GMKPNSVTYSHF 292 (402)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l 292 (402)
.++.+.+...|++....+ |+...-. .-.+-..+.|++.+|.+.|.+.+.. +..|+...|...
T Consensus 216 ~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 566777777777666544 4322211 1122234556667777777766643 233444556555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH---HHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVY---FTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.....+.|+.++|+.--++..+. |.... ..-..++...+++++|.+-++...+.
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666667777766666665542 32222 22223344456666666666666554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00044 Score=57.65 Aligned_cols=100 Identities=24% Similarity=0.257 Sum_probs=77.0
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChH
Q 041936 260 SLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYE 338 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~ 338 (402)
-+.+.+++.+|+..|.+.++.... |.+.|..-..+|.+.|.++.|++-.+..+.- .|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 456778899999999988887333 6777888888899999999888888877763 344 568888888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041936 339 TALGFCKESIAKGWVPNFTTMKSLVT 364 (402)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (402)
+|.+.|++.++. .|+-.+|..=+.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 999988888765 566666654443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.03 Score=49.73 Aligned_cols=83 Identities=11% Similarity=-0.013 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHH
Q 041936 72 HLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNAL 151 (402)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 151 (402)
+.|...|-.++..+...+..++..++++++. .+.+.-+..|..-+..-...+++..+..+|.+..... .+...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~-~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLS-SPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhc-CCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHH
Confidence 3477899999999999999999999999998 6777777888888887777899999999999988764 446666666
Q ss_pred HHHHHH
Q 041936 152 LLALTI 157 (402)
Q Consensus 152 ~~~~~~ 157 (402)
++--.+
T Consensus 116 l~YIRr 121 (660)
T COG5107 116 LEYIRR 121 (660)
T ss_pred HHHHHh
Confidence 654443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0015 Score=49.63 Aligned_cols=87 Identities=8% Similarity=0.002 Sum_probs=40.4
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041936 225 GFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEE 304 (402)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 304 (402)
.+...|++++|.++|+-+.... +-+..-|-.|.-++-..|++++|+..|.......+. |...+-.+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHH
Confidence 3344455555555555444433 233333444444444445555555555554444322 34444444555555555555
Q ss_pred HHHHHHHHH
Q 041936 305 AKKFYRIMS 313 (402)
Q Consensus 305 a~~~~~~m~ 313 (402)
|.+.|+..+
T Consensus 122 A~~aF~~Ai 130 (157)
T PRK15363 122 AIKALKAVV 130 (157)
T ss_pred HHHHHHHHH
Confidence 555544444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00029 Score=46.07 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=42.3
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH
Q 041936 121 GQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV 187 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 187 (402)
.+.|++++|++.|+++.+.. +.+...+..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence 35677777777777777665 556777777777777778888888777777654 4554444433
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0025 Score=50.37 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 290 SHFIYGFCKDGNFEEAKKFYRIMSNSGLSP--NSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
..+...+...|++++|...|.+.......+ ...++..+...+...|++++|...+++...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444444321111 112344444444445555555555544443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0019 Score=51.55 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=46.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----------------cCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 041936 195 SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK----------------EEKYEDVNKVLQMMERYGMKSGVSMYNVRI 258 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 258 (402)
|.++=....+..|.+-|+.-|..+|+.|++.+=+ -.+-+-|++++++|...|+-||..++..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3444444445555555555555555555554432 122467888888888888888888888888
Q ss_pred HHHHccCC
Q 041936 259 HSLCKLRK 266 (402)
Q Consensus 259 ~~~~~~~~ 266 (402)
+.+++.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 88877654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.057 Score=51.10 Aligned_cols=319 Identities=13% Similarity=0.070 Sum_probs=183.3
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCc--chH-HHHHHHhhcCCCCCchHHHHHH
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYF--NGI-SQYLEELKTRPDLQNERFHAHS 116 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a-~~~~~~~~~~~~~~~~~~~~~l 116 (402)
-...-++..+...+.+..|.++..|+....... ...|........+..+. +++ ..+-+++. ... ...-.|..+
T Consensus 438 l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~--~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~~-~~~iSy~~i 513 (829)
T KOG2280|consen 438 LSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG--DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AKL-TPGISYAAI 513 (829)
T ss_pred hchhhhhHHHHhcchhHHHHHHHHHhCCccccc--cHHHHHHHHHHHhccCccchHHHHHHHHHhc-ccC-CCceeHHHH
Confidence 334457778888899999999999997664332 34566666666666322 223 33333333 222 334456777
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhc----------CCCCCHH
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLR----HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTY----------GIKPDLD 182 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~p~~~ 182 (402)
..-...+|+++-|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++-++.++. ..+....
T Consensus 514 A~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~ 593 (829)
T KOG2280|consen 514 ARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALS 593 (829)
T ss_pred HHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhH
Confidence 77778899999999888753322210 122234455666677788877777776663321 0111112
Q ss_pred HHHHHHHH--------HHhcCChhHHHHHH--HHHHhCC-CCCCHhhHHHHHHHHhccCCHHHHH----------HHHHH
Q 041936 183 TYNRVIKA--------FCESSDSSSAYSIL--AEMDRKS-IKPNASSFGALVAGFYKEEKYEDVN----------KVLQM 241 (402)
Q Consensus 183 ~~~~li~~--------~~~~~~~~~a~~~~--~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~----------~~~~~ 241 (402)
.|.-+++- +...++-.++...| +...... +.+-........+++.+.....-.. ++.+.
T Consensus 594 lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~ 673 (829)
T KOG2280|consen 594 LYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRT 673 (829)
T ss_pred HHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 22222220 11111111111111 1100000 1111122333344444443322111 11222
Q ss_pred HHH-CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041936 242 MER-YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN 320 (402)
Q Consensus 242 ~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 320 (402)
+.. .|..-..-+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+.+..
T Consensus 674 Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------ 743 (829)
T KOG2280|consen 674 LEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------ 743 (829)
T ss_pred HHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------
Confidence 221 2222333345555666677899999988877765 57999999999999999999988777665542
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 041936 321 SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGL 381 (402)
Q Consensus 321 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 381 (402)
+.-|.-++.+|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.++--+
T Consensus 744 PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 744 PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred CCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 45577789999999999999998865422 11 467788899999888876443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0051 Score=50.48 Aligned_cols=221 Identities=13% Similarity=0.020 Sum_probs=130.2
Q ss_pred hhhhhhhhhhhcccccC--CCCCCCCCCCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC
Q 041936 12 NLFSQKHHRYLATSSIL--SSGDKTPLTSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEAN 89 (402)
Q Consensus 12 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 89 (402)
+-|.+..-++...|..- ..+|.-|++-+.....+ ....|+|.+.+.-+..... .-..++..+....
T Consensus 96 ~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~---~~~lgnpqesLdRl~~L~~---------~V~~ii~~~e~~~ 163 (366)
T KOG2796|consen 96 GNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAEL---QQYLGNPQESLDRLHKLKT---------VVSKILANLEQGL 163 (366)
T ss_pred ccCCCcceeeeeccccCCCCcCccccHHHHHHHHHH---HHhcCCcHHHHHHHHHHHH---------HHHHHHHHHHhcc
Confidence 44455555555554332 23333344433333332 3345677776665554421 1233344444334
Q ss_pred CcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041936 90 YFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFI 169 (402)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 169 (402)
..+.-.++|++=. ..+-..++..+.-.|.+.-...++++..+.+.+.++.....|++.-.+.|+.+.|...|+
T Consensus 164 ~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 164 AEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred chhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4466666676533 123445566666777888888888888877656677777888888888888888888888
Q ss_pred HchhhcCCCCCHHHHHHH-----HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 170 EFPKTYGIKPDLDTYNRV-----IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 170 ~~~~~~~~~p~~~~~~~l-----i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
+..+. .-+.|..+.+.+ ...|...+++..|...+.+....+ +.|+...|.-.-+..-.|+...|.+.++.|.+
T Consensus 237 ~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 237 DVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred HHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66433 223344444333 344566777888888887777664 23455555444445556888888888888877
Q ss_pred CCCCCChhhHH
Q 041936 245 YGMKSGVSMYN 255 (402)
Q Consensus 245 ~~~~~~~~~~~ 255 (402)
.- |...+-+
T Consensus 315 ~~--P~~~l~e 323 (366)
T KOG2796|consen 315 QD--PRHYLHE 323 (366)
T ss_pred cC--Cccchhh
Confidence 53 4444444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0057 Score=57.30 Aligned_cols=144 Identities=11% Similarity=0.027 Sum_probs=101.2
Q ss_pred CCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHHhc--------CChhHHHHHHH
Q 041936 140 KLRHSVGAFNALLLALTIAK-----DYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFCES--------SDSSSAYSILA 205 (402)
Q Consensus 140 ~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------~~~~~a~~~~~ 205 (402)
..+.+...|...+.+..... +.+.|..+|++.++. .|+ ...|..+..++... .++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 33788888888888755432 367899999998765 555 34444443333221 12345555555
Q ss_pred HHHhC-CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 041936 206 EMDRK-SIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284 (402)
Q Consensus 206 ~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 284 (402)
+.... ....+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++.... .|
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 54443 234455777777666777899999999999999876 68889999999999999999999999998876 44
Q ss_pred CHHHHH
Q 041936 285 NSVTYS 290 (402)
Q Consensus 285 ~~~~~~ 290 (402)
...||.
T Consensus 485 ~~pt~~ 490 (517)
T PRK10153 485 GENTLY 490 (517)
T ss_pred CCchHH
Confidence 444543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.043 Score=48.02 Aligned_cols=111 Identities=18% Similarity=0.226 Sum_probs=86.6
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGF 296 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 296 (402)
.+.+..+.-+...|+...|.++-.+.. .|+...|-..+.+++..+++++...+... . -++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 355666777788899888888766653 58999999999999999999988776442 1 2457789999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 041936 297 CKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
.+.|+..+|..+..++ .+..-+..|.+.|++.+|.+...+.
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999988772 2255677889999999998765433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0035 Score=45.86 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=43.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHcc
Q 041936 259 HSLCKLRKCAEAKALLDEMLSKGMKPN--SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS--PNSSVYFTMVYFMCKG 334 (402)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~ 334 (402)
.++-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|..++++....... .+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455666666666666665554432 223444555555566666666666655543111 0111112222344555
Q ss_pred CChHHHHHHHHHHH
Q 041936 335 GDYETALGFCKESI 348 (402)
Q Consensus 335 g~~~~a~~~~~~~~ 348 (402)
|+.++|...+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666655554443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00043 Score=44.76 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=38.1
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC
Q 041936 328 VYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTK 388 (402)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 388 (402)
...+...|++++|...|+++++.. +-+...+..+..++.+.|++++|...|+++.+..|.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 345566677777777777776654 445666666666677777777777777776665443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0091 Score=55.98 Aligned_cols=142 Identities=11% Similarity=0.079 Sum_probs=100.9
Q ss_pred CCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhcc--------CCHHHHHHHHHHH
Q 041936 177 IKPDLDTYNRVIKAFCESS-----DSSSAYSILAEMDRKSIKPN-ASSFGALVAGFYKE--------EKYEDVNKVLQMM 242 (402)
Q Consensus 177 ~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~ 242 (402)
.+.+...|...+++..... +.+.|..+|++..+. .|+ ...|..+..++... .+...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3678888998888755432 367899999999986 444 44454443333221 1234455555544
Q ss_pred HHC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041936 243 ERY-GMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS 321 (402)
Q Consensus 243 ~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 321 (402)
... ..+.+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|...+.+.... .|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 332 124455778877777777899999999999999874 68889999999999999999999999999875 4444
Q ss_pred HhH
Q 041936 322 SVY 324 (402)
Q Consensus 322 ~~~ 324 (402)
.+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.026 Score=43.95 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=64.8
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 041936 213 KPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG---MKPNSVTY 289 (402)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~ 289 (402)
.|+...-..|..++...|+..+|...|++...--+.-|......+.++....+++..|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 344445555555666666666666666655544344455555555555555666666666666655542 1222 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHH
Q 041936 290 SHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALG 342 (402)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 342 (402)
-.+.+.+...|.+..|+.-|+..... -|+...-......+.+.|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 34455555566666666666655553 2333333333333445554444433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.032 Score=52.25 Aligned_cols=239 Identities=8% Similarity=0.035 Sum_probs=142.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH----------HHHhcCCHHHHHHHHHHhHhCCC
Q 041936 72 HLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII----------LYGQANMTEHAVRTFKEMDEHKL 141 (402)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~----------~~~~~~~~~~A~~~~~~~~~~~~ 141 (402)
.|-+..|..+.......-.++.|..-|-.... -+...+...+-. .-+--|++++|.++|-+|.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 35667888888888777778888777765442 122212212111 1223588999999988886543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGA 221 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 221 (402)
..+..+.+.|++-.+.++++.--....-..-...|+.+...+.....|++|.+.|..-... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 3567788889988888877543111001112356888888888888888888887654321 23
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041936 222 LVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 301 (402)
.+.++.+..++++.+.+-..+ +.+....-.+.+++.+.|.-++|.+.|-+-- .| ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHH
Confidence 456666666666655544443 3455556667778888888777777664432 11 235566777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhH--------------HHHHHHHHccCChHHHHHHHHHHHh
Q 041936 302 FEEAKKFYRIMSNSGLSPNSSVY--------------FTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 302 ~~~a~~~~~~m~~~~~~~~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
|.+|.++-++..-. ...+. ---|..+.+.|++-.|.+++.+|.+
T Consensus 894 W~~avelaq~~~l~----qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 894 WGEAVELAQRFQLP----QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHhccch----hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 77777766654321 11111 1123445566666666666666654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0088 Score=50.34 Aligned_cols=104 Identities=11% Similarity=0.087 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc---cCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 041936 285 NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK---GGDYETALGFCKESIAKGWVPNFTTMKS 361 (402)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (402)
|...|..|..+|...|+.+.|..-|.+..+.. .++...+..+..++.. ..+..++..++++++..+ +-++.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 67778788888888888888888887777651 1244455555554433 234567777888877765 556677777
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCCCh
Q 041936 362 LVTGLAGASKVSEAKELIGLVKEKFTKNV 390 (402)
Q Consensus 362 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 390 (402)
|...+...|++.+|...|+.|.+..++|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 77777788888888888888887655553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0083 Score=43.94 Aligned_cols=92 Identities=16% Similarity=0.084 Sum_probs=55.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HHHHHHHH
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHS--VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LDTYNRVI 188 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li 188 (402)
....++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++..... |+ ......+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHH
Confidence 344556667777777777777777664433 2345556666777777777777777765442 32 12222333
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 041936 189 KAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~ 209 (402)
-++...|+.++|+.++-....
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 455566777777776655443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00073 Score=43.66 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=34.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 174 (402)
...+.+.|++++|...|+.+.+.. +-+...+..+..++...|++++|..+|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556666666666666666554 445556666666666666666666666666443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00029 Score=46.05 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=33.9
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC
Q 041936 333 KGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKN 389 (402)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 389 (402)
..|++++|.++++++.+.. +-+...+..+..+|.+.|++++|.++++.+....+.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4566666666666666553 3355566666666666666666666666666654443
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0022 Score=53.58 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=64.3
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHHhcCChh
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP-DLDTYNRVIKAFCESSDSS 198 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~ 198 (402)
+.+.+++.+|+..|.+.++.. +.|...|..-..+|.+.|.++.|++-.+..+.. .| -..+|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHccCcHH
Confidence 556677777777777777664 455666666667777777777777666655432 22 2346677777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 041936 199 SAYSILAEMDRKSIKPNASSFGALVAG 225 (402)
Q Consensus 199 ~a~~~~~~~~~~g~~~~~~~~~~l~~~ 225 (402)
+|++.|++.++ +.|+..+|-.=+..
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 77777777666 35666565544443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.024 Score=46.35 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=28.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChHHH
Q 041936 327 MVYFMCKGGDYETALGFCKESIAK--GWVPNFTTMKSLVTGLAGASKVSEA 375 (402)
Q Consensus 327 l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a 375 (402)
+...|.+.|.+..|..-++.+++. +.+........++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 455677777777777777777765 1111223445566677777766643
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00078 Score=44.12 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHh
Q 041936 321 SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGAS-KVSEAKELIGLVKE 384 (402)
Q Consensus 321 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 384 (402)
+..|..+...+...|++++|+..|++.++.. +.+...|..+..++.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555666666666666666666666553 335555666666666666 46666666666554
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0097 Score=50.47 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=43.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPN--SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL--SPNSSVYFTMVY 329 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~ 329 (402)
|...+..+.+.|++++|...|+.+.+...... ...+..+..+|...|++++|...|..+.+.-. ......+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444333444555555555555554421100 12344455555555555555555555554310 011222333334
Q ss_pred HHHccCChHHHHHHHHHHHhC
Q 041936 330 FMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.+...|+.++|..+++++++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0079 Score=46.23 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=26.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 116 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
++..+...|++++|.++.+.+.... |.+...|..+|.+|...|+...|.++|+.+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444555555555555555443 444555555555555555555555555444
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.071 Score=43.57 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=22.3
Q ss_pred HHhcCCcchHHHHHHHhhcC--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 041936 85 LSEANYFNGISQYLEELKTR--PDLQNERFHAHSIILYGQANMTEHAVRTFKEMDE 138 (402)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 138 (402)
+...|++++|.+.|+.+... ..+........++.++.+.|+++.|...++.+.+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555554421 1112222333344444455555555555555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0046 Score=53.99 Aligned_cols=133 Identities=10% Similarity=0.047 Sum_probs=91.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHH----HCCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHH----CCCC-CCH
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMME----RYGM-KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLS----KGMK-PNS 286 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-p~~ 286 (402)
..|..|.+.|.-.|+++.|+...+.-. +.|- ......+..+.+++.-.|+++.|.+.|+.-.. .|-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 457778888888899999987765332 2221 12345677788888889999999999887543 2222 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNS-----GLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
...-.|.+.|.-..++++|+.++.+-..- ...-....+.+|..+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34556788888888899999888764321 1222456788899999999999999888766543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.023 Score=47.96 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC---CHHHHHHHHHHHHHCCCCCChhhH
Q 041936 178 KPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE---KYEDVNKVLQMMERYGMKSGVSMY 254 (402)
Q Consensus 178 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 254 (402)
+-|...|-.|...|...|+.+.|..-|....+.. ..+...+..+..++.... ...++..+|+++.... +-++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4455666666666666666666666666665542 334455555554443322 2345666666666544 3444455
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 255 NVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 255 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
..+...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555566666666666666666655
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0077 Score=52.68 Aligned_cols=133 Identities=15% Similarity=0.104 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCH
Q 041936 252 SMYNVRIHSLCKLRKCAEAKALLDEML----SKGMKP-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSN----SGL-SPNS 321 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~-~~~~ 321 (402)
..|..|.+.|.-.|+++.|+..-+.-. +-|-+. ....+..+.+++.-.|+++.|.+.|+.-.. .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456667777777899999887655422 223221 234678889999999999999998886543 222 2234
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 322 SVYFTMVYFMCKGGDYETALGFCKESIA----K-GWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
.+.-+|...|.-..++++|+.++.+-+. . +..-....+.+|..+|...|..+.|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5566778888888889999988765332 1 2233567788899999999999999888776554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0091 Score=50.65 Aligned_cols=86 Identities=10% Similarity=-0.011 Sum_probs=36.5
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcC
Q 041936 227 YKEEKYEDVNKVLQMMERYGMKSGV----SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMK--PNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~ 300 (402)
.+.|++++|...|+.+.+.. |+. ..+-.+...|...|++++|...|+.+.+.-.. .....+-.+..++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 33445555555555444432 221 23344444444455555555555554433110 01222233333444445
Q ss_pred CHHHHHHHHHHHHh
Q 041936 301 NFEEAKKFYRIMSN 314 (402)
Q Consensus 301 ~~~~a~~~~~~m~~ 314 (402)
+.++|..+|+.+++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.089 Score=46.36 Aligned_cols=319 Identities=12% Similarity=-0.022 Sum_probs=182.0
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 041936 54 NPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTF 133 (402)
Q Consensus 54 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 133 (402)
++..|+..+..+...- .-+...|..-+..+...|+++++.--.+.-... .+.....+...-.++...++..+|.+.+
T Consensus 64 ~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~-kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRL-KDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred hHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheec-CCCccccccchhhhhhhhHHHHHHHHHh
Confidence 5556666665554221 113445666666666677777766554443311 1111112222333333333433443333
Q ss_pred H---------------HhHhCC-CCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH--HHhc
Q 041936 134 K---------------EMDEHK-LRHSVGAFNAL-LLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA--FCES 194 (402)
Q Consensus 134 ~---------------~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~ 194 (402)
+ ...... -+|.-..|..+ ..++.-.|+.++|.++--.+.+.. ....+..++++ +--.
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld----~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD----ATNAEALYVRGLCLYYN 216 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc----cchhHHHHhcccccccc
Confidence 2 222111 12333444444 356778899999988877775532 22334455544 3457
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHH-------------HHHHHHhccCCHHHHHHHHHHHHHCC---CCCChhhHHHHH
Q 041936 195 SDSSSAYSILAEMDRKSIKPNASSFG-------------ALVAGFYKEEKYEDVNKVLQMMERYG---MKSGVSMYNVRI 258 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~g~~~~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll 258 (402)
++.+.+...|++.+..+ |+...-. .=.+-..+.|++.+|.+.|.+.+... ..++...|....
T Consensus 217 ~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 88899999999988764 4433221 12344578999999999999988743 456677787788
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCC
Q 041936 259 HSLCKLRKCAEAKALLDEMLSKGMKPN-SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP-NSSVYFTMVYFMCKGGD 336 (402)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~ 336 (402)
.+..+.|+..+|+.--+...+. .|. ...|..-..++...++|++|.+-++...+....+ ...++.....++-+..+
T Consensus 295 ~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR 372 (486)
T ss_pred hhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence 8888999999999998888765 211 2234444566777899999999999988763322 12333333333333222
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCCChHHHHHHHHHHHh
Q 041936 337 YETALGFCKESIAKGWVPNFTTMKSLVTGL---AGASKVSEAKELIGLVKE 384 (402)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~ 384 (402)
.+. ..++--.......+....|..+.-.+ ...|.-.+|+..|.++-+
T Consensus 373 kd~-ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevge 422 (486)
T KOG0550|consen 373 KDW-YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGE 422 (486)
T ss_pred hhH-HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHH
Confidence 211 22222222223355566665543333 234556788888887765
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0092 Score=44.16 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh
Q 041936 139 HKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE 193 (402)
Q Consensus 139 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 193 (402)
....|+..+..+++.+|+..|++..|.++++...+.++++-+...|..|++-+..
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3456778888888888888888888888888887777777777777777765443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.15 Score=44.64 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
.+...+...+..|+|+.|+++++.-
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3444455555555555555555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.17 Score=44.87 Aligned_cols=166 Identities=10% Similarity=0.056 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHhhHHHHHHHHhc---cCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEMDRKS---IKPNASSFGALVAGFYK---EEKYEDVNKVLQMMERYGMKSGVSMYNV 256 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (402)
+...++-+|....+++..+++++.+.... +.-...+-....-++.+ .|+.++|++++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455556888889999999999887652 11122233344556666 8889999999888655555677888888
Q ss_pred HHHHHHcc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH---HHH-HhCCC--
Q 041936 257 RIHSLCKL---------RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNF----EEAKKFY---RIM-SNSGL-- 317 (402)
Q Consensus 257 ll~~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~----~~a~~~~---~~m-~~~~~-- 317 (402)
+.+.|-.. ...++|...|.+.-+. .||..+=..++..+...|.. .+..++- ..+ .++|.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 77766431 2356677777666554 24443322222222233321 1222332 111 12222
Q ss_pred -CCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 318 -SPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 318 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
..+-..+..++.++.-.|+.++|.+..++|.+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 223444566677777777777777777777765
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0032 Score=41.15 Aligned_cols=58 Identities=24% Similarity=0.183 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHc
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK-DYKEVKRVFIEF 171 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~ 171 (402)
+..+...+...|++++|+..|++..+.+ +.+...|..+..++...| ++++|+..+++.
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3334444444444444444444444433 333344444444444444 344444444443
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0046 Score=40.91 Aligned_cols=57 Identities=18% Similarity=0.071 Sum_probs=30.3
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 041936 330 FMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFT 387 (402)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (402)
.|.+.+++++|.++++.++..+ +.+...+.....++.+.|++++|.+.|+...+..|
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 3445555555555555555543 33445555555555555555555555555555433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0062 Score=40.27 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=34.4
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 174 (402)
.|.+.+++++|.++++.+...+ |.+...|.....++...|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556666666666666666654 455556666666666666666666666666543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.33 Score=45.95 Aligned_cols=117 Identities=9% Similarity=0.070 Sum_probs=55.2
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHH
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIIL 119 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 119 (402)
+.-+.|+.+-...|+|-+.+++++.-+...+...-...|..+...++....|++|.+++..-.. ....+.+
T Consensus 761 drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ec 831 (1189)
T KOG2041|consen 761 DRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIEC 831 (1189)
T ss_pred chhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHH
Confidence 3334455555555555555555544332222222334555555555555555555555554320 1123344
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIE 170 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 170 (402)
+.+..++++-..+-..+ +.+....-.+..++...|.-++|.+.|-+
T Consensus 832 ly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 44444444443333333 33334444555566666666666555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.23 Score=44.09 Aligned_cols=168 Identities=13% Similarity=0.059 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCC--CCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHhhHH
Q 041936 146 GAFNALLLALTIAKDYKEVKRVFIEFPKTYGI--KPDLDTYNRVIKAFCE---SSDSSSAYSILAEMDRKSIKPNASSFG 220 (402)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (402)
.+...++-+|....+++..+++++.+..-... .-+...-....-++.+ .|+.++|++++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34445556788899999999999999432111 1122222234445556 799999999999966666678899999
Q ss_pred HHHHHHhc---------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC----HHHHHHHH---HH-HHHCCC-
Q 041936 221 ALVAGFYK---------EEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRK----CAEAKALL---DE-MLSKGM- 282 (402)
Q Consensus 221 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~~a~~~~---~~-~~~~~~- 282 (402)
.+...|-. ....++|+..|.+.-+.. |+...=-.++..+...|. -.+..++- .. +.+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 99987732 123567777776655432 443221112222222332 22333433 11 112332
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 283 --KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 283 --~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
..|-..+.+++.++.-.|+.++|.+..+.|...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 245666788899999999999999999999875
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.014 Score=43.24 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 285 NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS---------------GLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
|..++..+|.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5678899999999999999999988875321 2457888889999999999999999999988876
Q ss_pred C-CCCCCHHHHHHHHHHHHcCCC
Q 041936 350 K-GWVPNFTTMKSLVTGLAGASK 371 (402)
Q Consensus 350 ~-~~~~~~~~~~~l~~~~~~~g~ 371 (402)
. +++.+..+|..|++-....-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 5 777788889888877655444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.037 Score=50.73 Aligned_cols=74 Identities=9% Similarity=0.107 Sum_probs=33.3
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHH
Q 041936 121 GQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSA 200 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a 200 (402)
.+.|+++.|.++.++. .+...|..|.....+.|+++-|++.|.+. +. |..|+-.|.-.|+.+..
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKA-KD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHC-T----------HHHHHHHHHHCT-HHHH
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhh-cC---------ccccHHHHHHhCCHHHH
Confidence 4455555554443321 23445555555555555555555555444 11 33444444445555444
Q ss_pred HHHHHHHHhC
Q 041936 201 YSILAEMDRK 210 (402)
Q Consensus 201 ~~~~~~~~~~ 210 (402)
.++.+.....
T Consensus 393 ~kl~~~a~~~ 402 (443)
T PF04053_consen 393 SKLAKIAEER 402 (443)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 4444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.015 Score=44.66 Aligned_cols=69 Identities=22% Similarity=0.310 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHhh
Q 041936 148 FNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR-----KSIKPNASS 218 (402)
Q Consensus 148 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 218 (402)
...++..+...|++++|.++...+.... +.+...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4445555666666666666666665443 44555666666666666666666666665532 255555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.3 Score=42.92 Aligned_cols=284 Identities=13% Similarity=0.092 Sum_probs=143.6
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 041936 53 SNPEKILEICRAAALTPESHLDRLAFSIAINK--LSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAV 130 (402)
Q Consensus 53 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 130 (402)
||...|.+.-.....- ...|...+..++.+ -.-.|+++.|.+-|+.|...+...-.. ...|.-..-+.|+.+.|.
T Consensus 98 Gda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllG-LRgLyleAqr~GareaAr 174 (531)
T COG3898 98 GDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLG-LRGLYLEAQRLGAREAAR 174 (531)
T ss_pred CchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHh-HHHHHHHHHhcccHHHHH
Confidence 4555565554443311 11233333444333 333577777887777777332211111 222233334567777777
Q ss_pred HHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHH--HHHHHHHHH---hcCChhHHHHHHH
Q 041936 131 RTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDT--YNRVIKAFC---ESSDSSSAYSILA 205 (402)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~---~~~~~~~a~~~~~ 205 (402)
.+-+..-..- +.-...+...+...+..|+++.|+++++.-....-+.++..- -..|+.+-. -..+...|...-.
T Consensus 175 ~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 7776665443 344566777788888888888888888776444444555432 222332211 1233444444443
Q ss_pred HHHhCCCCCCHhh-HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCC
Q 041936 206 EMDRKSIKPNASS-FGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK-GMK 283 (402)
Q Consensus 206 ~~~~~g~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~ 283 (402)
+..+ +.||..- -.....++.+.|+..++-.+++.+-+....| ..+... .+.+.|+. +..-+++.... .++
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk 325 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIALLY--VRARSGDT--ALDRLKRAKKLESLK 325 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHHHH--HHhcCCCc--HHHHHHHHHHHHhcC
Confidence 3333 3444322 2233456667777777777777766654333 222222 22344432 22222222211 123
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HccCChHHHHHHHHHHHhC
Q 041936 284 P-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM-CKGGDYETALGFCKESIAK 350 (402)
Q Consensus 284 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~ 350 (402)
| +......+..+-...|++..|..--+.... ..|....|..|.+.- ...||-.++..++.+.++.
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3 344555556666666666666555544443 345666666555543 3346666777766666654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.06 Score=41.40 Aligned_cols=86 Identities=9% Similarity=-0.093 Sum_probs=57.1
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHH
Q 041936 262 CKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 341 (402)
...|++++|..+|+-+.-.+.. +..-|..|..++-..+++++|...|......+. -|+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 4567788888887777665333 445556666667777777888777776665433 23444555666777777888887
Q ss_pred HHHHHHHh
Q 041936 342 GFCKESIA 349 (402)
Q Consensus 342 ~~~~~~~~ 349 (402)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77777766
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.069 Score=49.01 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=81.3
Q ss_pred HHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 041936 84 KLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKE 163 (402)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 163 (402)
...-.++++++.++.+.-.-.+. .+......++..+.+.|-++.|+++-.+-. .-.....+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~-i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPN-IPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhccc-CChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 34445666666555542111111 124446666666667777777766644321 12344556677777
Q ss_pred HHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041936 164 VKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMME 243 (402)
Q Consensus 164 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (402)
|.++.++. .+...|..|.......|+++-|++.|++..+ +..|+-.|.-.|+.+...++.+...
T Consensus 337 A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 337 ALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 76665443 2555677777777777777777776665532 4455555666666666666666655
Q ss_pred HCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 041936 244 RYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 244 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (402)
..|- ++....++...|+.++..+++.+
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5441 44444555555666666655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.36 Score=46.02 Aligned_cols=250 Identities=12% Similarity=0.151 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCC----CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC-----------
Q 041936 75 RLAFSIAINKLSEANYFNGISQYLEELKTRPDL----QNERFHAHSIILYGQANMTEHAVRTFKEMDEH----------- 139 (402)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----------- 139 (402)
...|..+....-..|+++.|..+++.=...+.. .+-.-+...+.-+.+.|+.+-...++-.+...
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~ 586 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLR 586 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888889999998888764322111 11122444556677778887777777666542
Q ss_pred CCCCCHHHHHHHHH--------HHHHcCCHHHHHHHH--HHchh---hcCCCCCHHHHHHHHHHHHhcCChh--------
Q 041936 140 KLRHSVGAFNALLL--------ALTIAKDYKEVKRVF--IEFPK---TYGIKPDLDTYNRVIKAFCESSDSS-------- 198 (402)
Q Consensus 140 ~~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~---~~~~~p~~~~~~~li~~~~~~~~~~-------- 198 (402)
..+.....|.-+++ .+...++-.++...| +...+ ..+..|+ .......+.+.....
T Consensus 587 ~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 587 NQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHH
Confidence 11112222222221 011112222222211 11000 0122222 233344444443311
Q ss_pred --HHHHHHHHHHhC-CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 199 --SAYSILAEMDRK-SIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 199 --~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
+-+++.+.+..+ |.....-+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 122223333222 333344456666677788899999988877765 5899999999999999999988777766
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 041936 276 EMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKE 346 (402)
Q Consensus 276 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (402)
... .+.-|.-++.+|.+.|+.++|.+++.+.... .-.+.+|.+.|++.+|.++--+
T Consensus 740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence 544 2455677899999999999999998765431 1567888899999988876543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.13 Score=37.73 Aligned_cols=138 Identities=17% Similarity=0.222 Sum_probs=83.3
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHH---HHHHHHHHhcCC
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTY---NRVIKAFCESSD 196 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~---~~li~~~~~~~~ 196 (402)
..-.|..++..++..+... +.+..-+|.+|--....-+-+-..++++.+-+-. |...+ ..++.+|...|
T Consensus 12 ~ildG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Dis~C~NlKrVi~C~~~~n- 83 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DISKCGNLKRVIECYAKRN- 83 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----GGG-S-THHHHHHHHHTT-
T ss_pred HHHhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHHhhhc----CchhhcchHHHHHHHHHhc-
Confidence 3346777777888877765 3456667777766666666677777777664332 33221 22333333332
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 041936 197 SSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (402)
.+...+...+..+...|+-++-.+++..+.+.+ .++....-.+..+|.+.|+..++.+++.+
T Consensus 84 -----------------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 84 -----------------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp --------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -----------------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 244556667777888888888888888887643 67777788888888888888888888888
Q ss_pred HHHCCCC
Q 041936 277 MLSKGMK 283 (402)
Q Consensus 277 ~~~~~~~ 283 (402)
.-+.|++
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 8888764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.26 Score=42.64 Aligned_cols=132 Identities=13% Similarity=0.177 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHchhhcCC--CCCHHHHHHHHHHHHhcCCh
Q 041936 126 TEHAVRTFKEMDEHKLRHSVGAFNALLLALTI--AK----DYKEVKRVFIEFPKTYGI--KPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 126 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~ 197 (402)
+++.+.+++.|.+.|...+..+|-+....... .. ...+|..+|+.|.+.+.. .++...+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556788888888888887776554433333 22 245688888888665443 2344455555543 33332
Q ss_pred ----hHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhccCC--HHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 041936 198 ----SSAYSILAEMDRKSIKPNA--SSFGALVAGFYKEEK--YEDVNKVLQMMERYGMKSGVSMYNVRIH 259 (402)
Q Consensus 198 ----~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 259 (402)
+.++.+|+.+.+.|+..+. ...+.++..+..... ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4567777777776765443 233334433322222 3467777777777777776666655543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.27 Score=40.81 Aligned_cols=130 Identities=12% Similarity=0.052 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH-----H
Q 041936 185 NRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRI-----H 259 (402)
Q Consensus 185 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~ 259 (402)
+.++..+...|.+.-.+.++++.++...+.++.....+++.-.+.||.+.|...|+...+..-..+..+.+.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34445555556666666666666665444555556666666666666666666666555432233333333322 2
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 260 SLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
.|.-.+++..|...+.+....... |....|.-.-+..-.|+...|.+.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233345555555555555544211 3333333333333345555666666655553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.42 Score=42.84 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=66.2
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMMERYG-MKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTY-SHFIY 294 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~ 294 (402)
.+|...++.-.+..-++.|..+|-++.+.+ +.+++..+++++..++. |+..-|..+|+--... -||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 345555555555555666666666666655 44556666666655543 4555566665543332 2232222 23344
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 295 GFCKDGNFEEAKKFYRIMSNSGLSPN--SSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
-+...++-+.|..+|+..++. +.-+ ...|..+|..=..-|+...+..+=+.|..
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 444556666666666643332 1111 34555666555555666555555554444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.24 Score=46.24 Aligned_cols=178 Identities=20% Similarity=0.174 Sum_probs=119.4
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCC-----hhhHHHHHHHHHc----cCCHHHH
Q 041936 201 YSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG-MKSG-----VSMYNVRIHSLCK----LRKCAEA 270 (402)
Q Consensus 201 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~ll~~~~~----~~~~~~a 270 (402)
.-+|.-+..- +|| .+..+++..+-.||-+.+++.+.+..+.+ +.-. .-.|..++..++. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3444444443 232 35567777788899999999998876633 2111 1234444444443 4577889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 041936 271 KALLDEMLSKGMKPNSVTYSHF-IYGFCKDGNFEEAKKFYRIMSNSG---LSPNSSVYFTMVYFMCKGGDYETALGFCKE 346 (402)
Q Consensus 271 ~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (402)
.++++.+.+. -|+...|... .+.+...|++++|++.|++..... .+.....+--+...+.-.+++++|.+.+..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 9999999987 6777666544 455677899999999999866421 112334455666778889999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHH-HHcCCCh-------HHHHHHHHHHHhc
Q 041936 347 SIAKGWVPNFTTMKSLVTG-LAGASKV-------SEAKELIGLVKEK 385 (402)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~~~~~ 385 (402)
+.+.. .-+..+|..+..+ +...|+. ++|.++|.++...
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99864 3345555554433 4567777 8888888887653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.11 Score=43.38 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 041936 289 YSHFIYGFCKDGNFEEAKKFYRIMSNSGLS--PNSSVYFTMVYFMCKGGDYETALGFCKESIAK--GWVPNFTTMKSLVT 364 (402)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~ 364 (402)
|+.-+.. .+.|++..|..-|...++.... -....+--|..++...|+++.|..+|..+.+. ..+--+..+--|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4433333 2445555555555555554211 11222333555555566666666655555543 11112244444555
Q ss_pred HHHcCCChHHHHHHHHHHHhcCCCCh
Q 041936 365 GLAGASKVSEAKELIGLVKEKFTKNV 390 (402)
Q Consensus 365 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 390 (402)
...+.|+.++|..+|+++.+++|...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 55566666666666666665555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0078 Score=35.16 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHh
Q 041936 357 TTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEA 398 (402)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 398 (402)
.++..+..+|.+.|++++|+++|+++.+..|.|...|..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356677888888888888888888888888888888876643
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.4 Score=41.37 Aligned_cols=163 Identities=12% Similarity=0.092 Sum_probs=83.6
Q ss_pred hHHHHHHHHhccCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041936 218 SFGALVAGFYKEEKYE---DVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIY 294 (402)
Q Consensus 218 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 294 (402)
++..++.+|...+..+ +|.++++.+.... +-...++-.-+..+.+.++.+.+.+++.+|...- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4556667776666654 4445555554432 2234455556666666778888888888887652 112233444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHhCCCCCCHH-hHH-HHH---HHHHccCC------hHHHHHHHHHHHhC-CCCCCHHHH
Q 041936 295 GF---CKDGNFEEAKKFYRIMSNSGLSPNSS-VYF-TMV---YFMCKGGD------YETALGFCKESIAK-GWVPNFTTM 359 (402)
Q Consensus 295 ~~---~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~-~l~---~~~~~~g~------~~~a~~~~~~~~~~-~~~~~~~~~ 359 (402)
.+ ... ....+...+..+....+.|... ... .++ -.....++ .+...++++...+. +.+.+..+-
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 332 3345555555555444444432 111 111 11122221 34444444433222 334444443
Q ss_pred HHHH-------HHHHcCCChHHHHHHHHHHH
Q 041936 360 KSLV-------TGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 360 ~~l~-------~~~~~~g~~~~a~~~~~~~~ 383 (402)
..+. ..+.+.++++.|.+.|+-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3332 33567899999999998654
|
It is also involved in sporulation []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0065 Score=40.81 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=30.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 323 VYFTMVYFMCKGGDYETALGFCKESIAK----GW-VPN-FTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
+|+.+...|...|++++|+..+++..+. |- .|+ ..++..+..++...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554432 10 111 3344555555556666666666655544
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.27 Score=37.88 Aligned_cols=89 Identities=7% Similarity=0.005 Sum_probs=64.5
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041936 225 GFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEE 304 (402)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 304 (402)
-+...|++++|..+|.-+.-.+ .-+..-+..|..++-..+++++|...|......+.. |...+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 3457788888888888777655 344555666777777778888888888877665432 55555567788888888888
Q ss_pred HHHHHHHHHhC
Q 041936 305 AKKFYRIMSNS 315 (402)
Q Consensus 305 a~~~~~~m~~~ 315 (402)
|...|...+..
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 88888877763
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.2 Score=45.46 Aligned_cols=166 Identities=15% Similarity=0.170 Sum_probs=87.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHh
Q 041936 43 RAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQ 122 (402)
Q Consensus 43 ~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 122 (402)
+.++...-+..+++.-.+.-+.+....+..+ ..|..+ +-.......++.+++++..+.+.. . +.+
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCA--dAYILL--AEEeA~Ti~Eae~l~rqAvkAgE~----~-------lg~ 236 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCA--DAYILL--AEEEASTIVEAEELLRQAVKAGEA----S-------LGK 236 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhh--HHHhhc--ccccccCHHHHHHHHHHHHHHHHH----h-------hch
Confidence 3445555556677766666666653332221 122222 122344567777777776532211 0 011
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 041936 123 ANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYS 202 (402)
Q Consensus 123 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 202 (402)
....+..-..++.+......+-..+-..+..++.+.|+.++|++.+.+|.+.............|+.++...+.+.++..
T Consensus 237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 00001111111222222223333444556677778888888888888887654222234466778888888888888888
Q ss_pred HHHHHHhCCCCCC-HhhHHHHH
Q 041936 203 ILAEMDRKSIKPN-ASSFGALV 223 (402)
Q Consensus 203 ~~~~~~~~g~~~~-~~~~~~l~ 223 (402)
++.+..+...+.+ ...|+..+
T Consensus 317 lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHhccccCCchHHHHHHHHH
Confidence 8888765443333 23455544
|
The molecular function of this protein is uncertain. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.54 Score=44.15 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=105.8
Q ss_pred HHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCC-CHHHHHH-----HHHHHHhcCChhHHHHHHH
Q 041936 132 TFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP-DLDTYNR-----VIKAFCESSDSSSAYSILA 205 (402)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~-----li~~~~~~~~~~~a~~~~~ 205 (402)
-++++++.|-.|+... +...++-.|.+.+|.++|.+- |... -...|+- +..-+...|+.++-..+.+
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~----G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~R 694 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS----GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIR 694 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc----CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 3455666675566543 345566677777777777654 2111 1111111 1222333333333333222
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH------HHHHCCC---CCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 041936 206 EMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQ------MMERYGM---KSGVSMYNVRIHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 206 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (402)
+--+- .-|..-=.+....+...|+.++|..+.- .+.+.+- ..+..+...+...+.+...+..|-++|.+
T Consensus 695 KRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 695 KRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred HHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 21110 0011111223344556666666665432 1111111 23344455555666677778888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-----------hHHHHHHHHHccCChHHHHHHHH
Q 041936 277 MLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSS-----------VYFTMVYFMCKGGDYETALGFCK 345 (402)
Q Consensus 277 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~ 345 (402)
|-.. ..+++.....++|++|..+-+...+. .||.. -|.-.-.+|.+.|+-.+|.++++
T Consensus 773 ~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe 841 (1081)
T KOG1538|consen 773 MGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE 841 (1081)
T ss_pred hccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence 7532 34677778889999999888776653 33321 13334467888888888888888
Q ss_pred HHHhC
Q 041936 346 ESIAK 350 (402)
Q Consensus 346 ~~~~~ 350 (402)
.+...
T Consensus 842 QLtnn 846 (1081)
T KOG1538|consen 842 QLTNN 846 (1081)
T ss_pred Hhhhh
Confidence 77654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.018 Score=38.67 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=10.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 148 FNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 148 ~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
|+.+..+|...|++++|+..|++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444443
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.43 Score=39.21 Aligned_cols=207 Identities=13% Similarity=0.091 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 041936 75 RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA 154 (402)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (402)
...|.....++-...++++|...+.+..+ +...+...| .....++.|.-+.+++.+. +.-+..|+.....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 34455555556666666666665555441 111111111 1122234444444444332 1222334444555
Q ss_pred HHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC---C--CCCCHhhHHHHHHHHhcc
Q 041936 155 LTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK---S--IKPNASSFGALVAGFYKE 229 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---g--~~~~~~~~~~l~~~~~~~ 229 (402)
|...|.++-|-..+++.-+ ..++-++++|+++|++.... + .+.-...+..+-+.+.+.
T Consensus 101 Y~E~GspdtAAmaleKAak-----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAK-----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHhCCcchHHHHHHHHHH-----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 5555555555554444321 12234455555555544321 1 011122344444555555
Q ss_pred CCHHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCC
Q 041936 230 EKYEDVNKVLQMMERY----GMKSG-VSMYNVRIHSLCKLRKCAEAKALLDEMLSKG---MKPNSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 230 ~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~ 301 (402)
.++++|-..+.+-... .--++ -..|...|-.+.-..++..|...++.-.+.+ -.-+..+...|+.+| ..|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 5555554444332110 00111 1223344444455556666666666533321 111344555566555 3455
Q ss_pred HHHHHHHH
Q 041936 302 FEEAKKFY 309 (402)
Q Consensus 302 ~~~a~~~~ 309 (402)
.+++.+++
T Consensus 243 ~E~~~kvl 250 (308)
T KOG1585|consen 243 IEEIKKVL 250 (308)
T ss_pred HHHHHHHH
Confidence 55544433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.03 Score=46.58 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=35.6
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 127 EHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK----------------DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
+-.-..++.|.+.|+..|..+|+.|++.+-+.. +-+-++.++++| +..|+.||..+-..|+.+
T Consensus 89 eFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~ 167 (406)
T KOG3941|consen 89 EFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNA 167 (406)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHH
Confidence 333344566677777777777777776554322 122344444555 444555555555555554
Q ss_pred HHhcC
Q 041936 191 FCESS 195 (402)
Q Consensus 191 ~~~~~ 195 (402)
+.+.+
T Consensus 168 FGr~~ 172 (406)
T KOG3941|consen 168 FGRWN 172 (406)
T ss_pred hcccc
Confidence 44443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.31 Score=37.02 Aligned_cols=84 Identities=19% Similarity=0.135 Sum_probs=37.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
.++..+...+.+......++.+...+ ..+...++.++..|++.+ ..+..+.++. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444445555555555555444 244445555555555432 2233333331 012222333455555555
Q ss_pred CHHHHHHHHHHH
Q 041936 301 NFEEAKKFYRIM 312 (402)
Q Consensus 301 ~~~~a~~~~~~m 312 (402)
-++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.26 Score=36.17 Aligned_cols=61 Identities=20% Similarity=0.204 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 290 SHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
...+......|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.++.+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444555555555555554432 23444445555555555555555555555555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.38 Score=46.43 Aligned_cols=180 Identities=17% Similarity=0.168 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSV--GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
....-+....+...++.|+.+-+.-. ..++. .......+-+.+.|++++|...|-+.+. -+.|. .+|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s-----~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPS-----EVIK 405 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChH-----HHHH
Confidence 34455666778888888887766532 12221 2333444556778999999988877652 12332 3566
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 041936 190 AFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAE 269 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 269 (402)
-|.....+.+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 677777788888889999999865 66777889999999999998877766554 3311 1124456666777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041936 270 AKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMS 313 (402)
Q Consensus 270 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 313 (402)
|..+-.+... .......++ ...+++++|++++..+.
T Consensus 482 a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 7766655432 233333333 46788999998887764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.22 Score=46.41 Aligned_cols=165 Identities=10% Similarity=0.005 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchH------HHHHHHHHHH----hcCCHHHHHHHHHHhHhCCCCCCHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNER------FHAHSIILYG----QANMTEHAVRTFKEMDEHKLRHSVG 146 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~ 146 (402)
.+..+++...-.|+-+.+++.+....+.+.....- .|...+..+. .....+.|.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 45666666677777777777776665433222221 1223333222 245678899999998876 57766
Q ss_pred HHHHH-HHHHHHcCCHHHHHHHHHHchhhc-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 041936 147 AFNAL-LLALTIAKDYKEVKRVFIEFPKTY-GI-KPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALV 223 (402)
Q Consensus 147 ~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~-~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (402)
.|... .+.+...|++++|++.|++..... .. +.....+--+.-.+.-.++|++|.+.|..+.+.. .-+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 66544 467788899999999999754311 11 2234455566777888899999999999998864 33445555444
Q ss_pred HH-HhccCCH-------HHHHHHHHHHHH
Q 041936 224 AG-FYKEEKY-------EDVNKVLQMMER 244 (402)
Q Consensus 224 ~~-~~~~~~~-------~~a~~~~~~~~~ 244 (402)
.+ +...|+. ++|.++|.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33 3456766 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.18 Score=45.56 Aligned_cols=67 Identities=9% Similarity=0.012 Sum_probs=53.7
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 106 DLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSV---GAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 106 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
.+.+...+..+..+|.+.|++++|+..|++..+.+ +-+. .+|..+..+|...|+.++|+..+++.++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667788888888999999999999999988764 2223 3588888899999999999999988865
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.13 Score=42.94 Aligned_cols=132 Identities=12% Similarity=0.174 Sum_probs=88.9
Q ss_pred CCccchHHHHHHHhcCCChhHHHHHHHHhhcCC-----CCCC-------CHHHHHHHHHHHHhcCCcchHHHHHHHhhcC
Q 041936 37 TSKDKTRAALTLLKSESNPEKILEICRAAALTP-----ESHL-------DRLAFSIAINKLSEANYFNGISQYLEELKTR 104 (402)
Q Consensus 37 ~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~-----~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 104 (402)
+....++.|-+.+--..|+..|++.++.....- .-.+ .......-|++++..++|.++....-+--..
T Consensus 33 ~a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~ 112 (309)
T PF07163_consen 33 PAVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV 112 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 344577778888888889999999987653221 0111 1123344577888888888888777666556
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH-----cCCHHHHHHHH
Q 041936 105 PDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI-----AKDYKEVKRVF 168 (402)
Q Consensus 105 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~ 168 (402)
+......+...-|-.|.+.+++..+.++-....+.--..+..-|..++..|.. .|.+++|+++.
T Consensus 113 pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 113 PEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred cccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 66666777777788888888888888888776653223344446666655544 58888888776
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.46 Score=44.61 Aligned_cols=215 Identities=14% Similarity=0.097 Sum_probs=123.3
Q ss_pred HHHHHHHHHhcCCcch--HHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 78 FSIAINKLSEANYFNG--ISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 78 ~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
++..-.+|.+..+..- ..--++++++++..|+.-. +...++-.|.+.+|-++|.+-=.. |..+.+|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmy 668 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE---------NRALEMY 668 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch---------hhHHHHH
Confidence 4444455555544432 2233455566776666543 344566788899988888763221 2234444
Q ss_pred HHcCCHHHHHHHHHHch---------hhcCCCCCHHHHHHHHHHHHhcCChhHHHHHH------HHHHhCCCCC---CHh
Q 041936 156 TIAKDYKEVKRVFIEFP---------KTYGIKPDLDTYNRVIKAFCESSDSSSAYSIL------AEMDRKSIKP---NAS 217 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~---------~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~------~~~~~~g~~~---~~~ 217 (402)
...+.++.|.+++..-. ++.....+..--.+...++...|+.++|..+. +-+.+.+.+. +..
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 44444555544442210 11011111111123445556677777776543 2222222222 344
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH----------
Q 041936 218 SFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSV---------- 287 (402)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---------- 287 (402)
+...+..-+.+...+.-|-++|..|-+ ...+++.....+++++|..+-++..+. .||+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 555555556667778888888888764 346778888999999999988776543 33332
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 288 -TYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 288 -~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
-|...-++|.+.|+-.+|..+++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2444557888899999999999887654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.77 Score=39.62 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=11.7
Q ss_pred HHHccCChHHHHHHHHHH
Q 041936 330 FMCKGGDYETALGFCKES 347 (402)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~ 347 (402)
.+.+.++++.|.++|+-.
T Consensus 255 ~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHhhcCHHHHHHHHHHH
Confidence 345567777777777644
|
It is also involved in sporulation []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.43 Score=40.43 Aligned_cols=148 Identities=10% Similarity=-0.001 Sum_probs=86.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
.......|++.+|...|+...+.. +.+...--.+..+|...|+.+.|..++..++.+.. .........-|..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhc
Confidence 334566777777777777776654 44455566677777777777777777777743310 1111112223445555555
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHccCCHH
Q 041936 197 SSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG-MKSGVSMYNVRIHSLCKLRKCA 268 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~ 268 (402)
..+..++-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+++ -.-|...-..++..+.-.|..+
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 55555555555442 2255566666677777777777776665554432 2344555666676666666333
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.76 Score=38.20 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=39.8
Q ss_pred HhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 041936 192 CESSDSSSAYSILAEMDRKS--IKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLC 262 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 262 (402)
.+.|++++|.+.|+.+.... -+-...+--.++-++.+.++++.|....++...........-|...|.+++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 45667777777777776542 112233445555666677777777777776666432222333444444444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.5 Score=35.85 Aligned_cols=7 Identities=14% Similarity=0.330 Sum_probs=2.5
Q ss_pred hhHHHHH
Q 041936 55 PEKILEI 61 (402)
Q Consensus 55 ~~~al~~ 61 (402)
+..+..+
T Consensus 23 ~~~l~~y 29 (140)
T smart00299 23 LEELIPY 29 (140)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.41 Score=35.99 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=45.4
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041936 260 SLCKLRKCAEAKALLDEMLSKGMK--PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMC 332 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 332 (402)
...+.|++++|.+.|+.+..+-.. -....-..++.+|.+.+++++|...++++++....-...-|...+.+++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 344668888888888888776211 1234455677778888888888888888777533222234444555543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.074 Score=44.41 Aligned_cols=89 Identities=19% Similarity=0.267 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC----------------HHHHH
Q 041936 178 KPDLDTYNRVIKAFCES-----SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK----------------YEDVN 236 (402)
Q Consensus 178 ~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------------~~~a~ 236 (402)
+.|..+|-..+..+... +.++-....++.|.+-|+.-|..+|+.|++.+-+..- -+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44666676666665543 5566666667777777877788888888777644322 13355
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 041936 237 KVLQMMERYGMKSGVSMYNVRIHSLCKLRK 266 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (402)
+++++|...|+-||..+-..+++++.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 556666666666666666666666655543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.17 Score=45.70 Aligned_cols=65 Identities=5% Similarity=-0.159 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNE---RFHAHSIILYGQANMTEHAVRTFKEMDEH 139 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 139 (402)
+...+..+..+|.+.|++++|+..|+..... .+.+. ..|..+..+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL-NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666777777777777777777776532 12222 24666777777777777777777776654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.22 Score=42.75 Aligned_cols=154 Identities=10% Similarity=-0.073 Sum_probs=100.5
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHH----HHHHHHHhcCC
Q 041936 121 GQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYN----RVIKAFCESSD 196 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~~~ 196 (402)
.-.|+..+|-..++++.+.- |.|...++.-=.+|.-.|+.+.....+++++.. ..+|...|. .+.-++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34677777777788777653 677777777778888888888888888777543 244443332 33444556788
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHccCCHHHHHHH
Q 041936 197 SSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG---VSMYNVRIHSLCKLRKCAEAKAL 273 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~ 273 (402)
+++|++.-++..+.+ +.|...-.+....+-..|+..++.++..+-....-... ..-|=...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 888888888877764 45666777777777788888888877765543221000 11122223344556788888888
Q ss_pred HHHHH
Q 041936 274 LDEML 278 (402)
Q Consensus 274 ~~~~~ 278 (402)
|+.-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 87544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.29 Score=43.28 Aligned_cols=89 Identities=17% Similarity=0.089 Sum_probs=43.2
Q ss_pred HHHHhcCCcchHHHHHHHhhc-----CCCCC---------chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHH
Q 041936 83 NKLSEANYFNGISQYLEELKT-----RPDLQ---------NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAF 148 (402)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~-----~~~~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 148 (402)
+.+.+.|++..|..-|+.... .+..+ ....+..+..+|.+.+++.+|++.-+..+..+ +.|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 345666777777666666441 01110 01223344444555555555555555554444 4444444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHch
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFP 172 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~ 172 (402)
-.-..++...|+++.|...|+++.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHH
Confidence 444455555555555555555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.3 Score=39.56 Aligned_cols=52 Identities=15% Similarity=0.076 Sum_probs=31.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFP 172 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 172 (402)
+.+..+.|+++...+........ .++...+..+... ..++.+++...++...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 45667778888755555554432 2345555555433 7788888877777663
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.93 Score=37.33 Aligned_cols=207 Identities=17% Similarity=0.186 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
..|.....+|....++++|...+.+..+- ...+...|+. ....+.|.-+.+++.+- +--+..|+--...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl---sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL---SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh---HHHHHHHHHHHHH
Confidence 45666677888899999998887776531 1222222221 22345555566665321 2223446666778
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH---CC--CCCChhhHHHHHHHHHccC
Q 041936 191 FCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER---YG--MKSGVSMYNVRIHSLCKLR 265 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~ll~~~~~~~ 265 (402)
|..+|.++.|-..+++.-+. ...-++++|+++|++... .+ ...-...|...-+.+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 88899888887777755332 122344555555544322 10 0111233444556677777
Q ss_pred CHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHccCCh
Q 041936 266 KCAEAKALLDEMLSK----GMKPNS-VTYSHFIYGFCKDGNFEEAKKFYRIMSNSG---LSPNSSVYFTMVYFMCKGGDY 337 (402)
Q Consensus 266 ~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~g~~ 337 (402)
.+++|-..+.+-... .-.++. ..|...|-.+....++..|.+.++.--+-+ -.-+..+...|+.+| ..||.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 777776666543321 111222 345556666777788999999988855442 122456777788776 67788
Q ss_pred HHHHHHHH
Q 041936 338 ETALGFCK 345 (402)
Q Consensus 338 ~~a~~~~~ 345 (402)
+++.+++.
T Consensus 244 E~~~kvl~ 251 (308)
T KOG1585|consen 244 EEIKKVLS 251 (308)
T ss_pred HHHHHHHc
Confidence 87776653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.73 E-value=2.2 Score=41.58 Aligned_cols=121 Identities=10% Similarity=0.041 Sum_probs=77.9
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 041936 42 TRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYG 121 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 121 (402)
++.-+..+..-.-++.|+.+.+.....+.. -......-.+.+-+.|++++|...|-+-...-.+ . .+|.-|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~--~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s----~Vi~kfL 408 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDT--LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--S----EVIKKFL 408 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--H----HHHHHhc
Confidence 444555666555666666665443322111 1122333344566789999998888665522211 1 3566677
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
...++..-..+++.+.+.| -.+...-..|+.+|.+.++.++-.+..+..
T Consensus 409 daq~IknLt~YLe~L~~~g-la~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKG-LANSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred CHHHHHHHHHHHHHHHHcc-cccchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 7778888888888888888 466667778999999999888877776655
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.18 Score=42.14 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=41.2
Q ss_pred hcCCHHHHHHHHHHhHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH-HHHHHHHHHHHhcCChh
Q 041936 122 QANMTEHAVRTFKEMDEHKL--RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL-DTYNRVIKAFCESSDSS 198 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~ 198 (402)
+.|++..|...|....+... .-....+-.|..++...|+++.|..+|..+.+.++-.|.. ...--|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 44445555555555544320 1112233345555555555555555555554443222221 33444444444555555
Q ss_pred HHHHHHHHHHhC
Q 041936 199 SAYSILAEMDRK 210 (402)
Q Consensus 199 ~a~~~~~~~~~~ 210 (402)
+|..+|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.61 E-value=2.4 Score=43.04 Aligned_cols=102 Identities=14% Similarity=0.200 Sum_probs=54.4
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHH
Q 041936 226 FYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSV--TYSHFIYGFCKDGNFE 303 (402)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~ 303 (402)
+...+.+++|--.|+..-+ ..-.+.+|..+|++.+|..+..++.... |.. +-..|+.-+...++.-
T Consensus 949 L~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccch
Confidence 3445555555555554432 1234556666666666666666554321 211 1245666666777777
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
+|-++..+.... | ...+..|++...+++|..+....
T Consensus 1017 eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 777776666542 1 22333455555666666655444
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.61 E-value=2.6 Score=41.49 Aligned_cols=229 Identities=10% Similarity=0.000 Sum_probs=125.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCH-------HHHHHHHH-HHHHcCCHHHHHHHHHHchhhc---CCCCCHHH
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSV-------GAFNALLL-ALTIAKDYKEVKRVFIEFPKTY---GIKPDLDT 183 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~ 183 (402)
.-+.......++++|..+..++...-..|+. ..++.+-. .....|++++|.++-+...... ...+....
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 3344556788999999998887643212221 23444432 3345688899888877765431 12334566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH-----HHHhccCC--HHHHHHHHHHHHHCC---CC---CC
Q 041936 184 YNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALV-----AGFYKEEK--YEDVNKVLQMMERYG---MK---SG 250 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~---~~---~~ 250 (402)
+..+..+..-.|++++|..+.++..+..-..+...+.... ..+...|. +.+.+..+....... .+ +-
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 7777788888999999999888776543233433333222 23455663 333333343332211 11 12
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----C
Q 041936 251 VSMYNVRIHSLCKLRKCAEAKALLDEMLS----KGMKPNSVTY--SHFIYGFCKDGNFEEAKKFYRIMSNSGLSP----N 320 (402)
Q Consensus 251 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~----~ 320 (402)
..++..++.++.+ .+.+..-...-.+ ....|-...+ ..++......|+.++|...+.++......+ +
T Consensus 580 ~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 580 VRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred HHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
Confidence 2344445555554 3333332222222 2222222222 367788888999999999999887653333 2
Q ss_pred HHhHHHHHH--HHHccCChHHHHHHHHH
Q 041936 321 SSVYFTMVY--FMCKGGDYETALGFCKE 346 (402)
Q Consensus 321 ~~~~~~l~~--~~~~~g~~~~a~~~~~~ 346 (402)
...-...+. .-...|+...+.....+
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222222222 23457888888777765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.27 Score=43.43 Aligned_cols=127 Identities=14% Similarity=0.062 Sum_probs=89.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 041936 257 RIHSLCKLRKCAEAKALLDEMLSK-----GMKP---------NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSS 322 (402)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 322 (402)
-.+.|.+.|++..|..-|++.... +..+ -..++..+.-+|.+.+++..|+...+.....+. +|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-Cchh
Confidence 347888999999999999987653 2222 112467778888899999999999998888743 4677
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHHhc
Q 041936 323 VYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKV-SEAKELIGLVKEK 385 (402)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 385 (402)
..-.-..+|...|+++.|+..|+++.+.. +-|...-..++..-.+.... +...++|..|..+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77777888889999999999999998864 33444444444444443333 3446777777765
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.1 Score=36.65 Aligned_cols=225 Identities=16% Similarity=0.121 Sum_probs=103.3
Q ss_pred cCCHHHHHHHHHHhHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041936 123 ANMTEHAVRTFKEMDEHKLR-HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAY 201 (402)
Q Consensus 123 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 201 (402)
.+....+...+......... .....+......+...+.+..+...+...............+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555555555443311 12455555666666666666666666655321011333344555555555566666666
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHH-HHhccCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 202 SILAEMDRKSIKPNASSFGALVA-GFYKEEKYEDVNKVLQMMERYGM--KSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 202 ~~~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
+.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 6666665543221 111222222 45566666666666665543110 0122222223333444555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 279 SKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 279 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
..........+..+...+...++++.+...+......... ....+..+...+...+..+.+...+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4411112344444555555555555555555555543111 122222222223344445555555554444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.89 Score=35.29 Aligned_cols=131 Identities=18% Similarity=0.099 Sum_probs=62.4
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchH-H--HHHH
Q 041936 41 KTRAALTLLKSESNPEKILEICRAAALTP-ESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNER-F--HAHS 116 (402)
Q Consensus 41 ~~~~~l~~l~~~~~~~~al~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--~~~l 116 (402)
.+..++++ .+.+.+++|+.-|....... +.-| ....-.......+.|+...|...|+++-.....|... - -..-
T Consensus 61 ~flaAL~l-A~~~k~d~Alaaf~~lektg~g~Yp-vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 61 AFLAALKL-AQENKTDDALAAFTDLEKTGYGSYP-VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 33445666666666554332 1111 1112222334455566666666666665322222111 0 1111
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
...+...|.++......+-+...+-+.....-..|.-+-.+.|++..|.++|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 223455666666666666555444333344444555555666666666666666643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.1 Score=40.72 Aligned_cols=116 Identities=7% Similarity=-0.015 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhc---------CCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 041936 54 NPEKILEICRAAALTPESHLD-RLAFSIAINKLSEA---------NYFNGISQYLEELKTRPDLQNERFHAHSIILYGQA 123 (402)
Q Consensus 54 ~~~~al~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 123 (402)
+.++|+.+|..+.......|+ ...|..+..++... .+..+|.+.-+... .-.+.|......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv-eld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS-DITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHhh
Confidence 445677788777644344443 23333333222111 11223333333333 22333444444444444445
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 124 NMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
++++.|..+|++....+ +-...+|......+.-.|+.++|.+.+++.
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555443 233334444444444455555555555553
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.5 Score=37.28 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=101.5
Q ss_pred HHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 041936 152 LLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK 231 (402)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 231 (402)
.......|++.+|..+|....... +-+...--.++.+|...|+.+.|..++..+...--.........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 345667889999999998886543 334556778889999999999999999988655322223333334555555555
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041936 232 YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK--GMKPNSVTYSHFIYGFCKDGNFEEAKK 307 (402)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~ 307 (402)
..+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+... |.. |...-..++..+.-.|.-+.+..
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHH
Confidence 55555555555442 346677777888888999999999888777654 433 55566677777777674444333
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.36 E-value=2 Score=41.16 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=104.1
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHh-------CCCCCCHhhHHHHHHHHhccC--
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKA-FCESSDSSSAYSILAEMDR-------KSIKPNASSFGALVAGFYKEE-- 230 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~l~~~~~~~~-- 230 (402)
...+..+++...+...+.+-...-.....+ +....|.+.|+.+|+.+.+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 456777777774432111111111122223 4466788888888888766 44 3345566666666533
Q ss_pred ---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCH
Q 041936 231 ---KYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCK-LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFC----KDGNF 302 (402)
Q Consensus 231 ---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~ 302 (402)
+.+.|..++...-+.| .|+...+-..+..... ..+...|.++|......|.. ..+-.+..+|. ...+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCH
Confidence 5677888888888777 4665554444433333 34677888888888887753 22222222221 23467
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 303 EEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 303 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
+.|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+.+.|
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 88888888888887 3332222233333333 66666666655555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.069 Score=31.07 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHH
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNA 150 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 150 (402)
+..+...|.+.|++++|.++|++..+.. +-|...+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~ 40 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 4445555566666666666666655543 344444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.63 Score=40.56 Aligned_cols=54 Identities=15% Similarity=-0.063 Sum_probs=24.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-----CCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041936 187 VIKAFCESSDSSSAYSILAEMDRKSI-----KPNASSFGALVAGFYKEEKYEDVNKVLQ 240 (402)
Q Consensus 187 li~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (402)
+..++...+.++++++.|+...+-.. -....++..+...|.+..|+++|.-+..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhH
Confidence 33444444455555555554433210 1112345555555555555555554433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.85 Score=39.39 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=102.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHH----HHHHHHccCCHH
Q 041936 193 ESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNV----RIHSLCKLRKCA 268 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~ 268 (402)
..|+..+|-..++++++. .+.|...+.-.-.+|.-.|+.+.-...++++.... .+|...|.. +.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 467777887888888776 56677788888888888888888888888887653 344433333 334455778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHhHHHHHHHHHccCChHHHHHHHH
Q 041936 269 EAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS---PNSSVYFTMVYFMCKGGDYETALGFCK 345 (402)
Q Consensus 269 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 345 (402)
+|++.-++..+.+. .|...-.++...+...|+..++.++..+-...--. .-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 88888888777643 36666667777777788888888877665543111 111223333444566688888888887
Q ss_pred HHH
Q 041936 346 ESI 348 (402)
Q Consensus 346 ~~~ 348 (402)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.72 Score=34.73 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=47.3
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH
Q 041936 81 AINKLSEANYFNGISQYLEELKTRP--DLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI 157 (402)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (402)
-.....+.|++++|.+.|+.+..+- .+-....-..++.+|.+.+++++|...++..++......-..|-..+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3444566778888888888887321 1223455566777888888888888888887776522222334444444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.02 E-value=1.3 Score=34.54 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=11.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~ 276 (402)
+..+++.+...|++-+|.++.+.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 33444444555555555555444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.95 E-value=2.7 Score=38.00 Aligned_cols=278 Identities=14% Similarity=0.125 Sum_probs=128.1
Q ss_pred HHhcCCcchHHHHHHHhhcCC----CCCchHHH-HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH--HHH
Q 041936 85 LSEANYFNGISQYLEELKTRP----DLQNERFH-AHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA--LTI 157 (402)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 157 (402)
+-+.++++++.++|.++.... .....+++ +.++++|. .++.+.-...+..+.+.. | ...|-.+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 455678888888887766221 12222333 33444443 344555555555544321 2 2223333332 346
Q ss_pred cCCHHHHHHHHHHchhhc-CCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHhhHH
Q 041936 158 AKDYKEVKRVFIEFPKTY-GIKP------------DLDTYNRVIKAFCESSDSSSAYSILAEMDRKS----IKPNASSFG 220 (402)
Q Consensus 158 ~~~~~~a~~~~~~~~~~~-~~~p------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~ 220 (402)
.+.+.+|.+.+.....+- +..| |-..=+..+.++...|.+.++..+++++...= ...+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 677777777776653220 1111 11122445666777788887777777665542 235667777
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMER---YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFC 297 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 297 (402)
.++-.+++. .|-++.+ ..+-|+ |--++-.|.+. ...++.-.-..+.|....+..++....
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kk------i~~~d~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHHHH
Confidence 655555432 2222221 112222 22222233221 000110000112344444444444433
Q ss_pred hcC--CHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHccCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHcCC
Q 041936 298 KDG--NFEEAKKFYRIMSNSGLSPNSS-VYFTMVYFMCKGGDYETALGFCKESIAKGWV----PNFTTMKSLVTGLAGAS 370 (402)
Q Consensus 298 ~~~--~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g 370 (402)
... ...--.+++..-...-+.|+.. ....+...+.. +.+++..+.+.+....+. -=..++..++...++.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1122222222223333445432 22334444433 555555555544433211 12346677777777888
Q ss_pred ChHHHHHHHHHHHhc
Q 041936 371 KVSEAKELIGLVKEK 385 (402)
Q Consensus 371 ~~~~a~~~~~~~~~~ 385 (402)
+..+|.+.+.-+.-.
T Consensus 313 ~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 313 QTEEAKQYLALLKIL 327 (549)
T ss_pred hHHHHHHHHHHHHhc
Confidence 888888877766553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.57 Score=32.27 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESI 348 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 348 (402)
++.+-++.+....+.|++....+.+++|.+.+|+..|.++++-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555554444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.48 Score=40.31 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHhhH
Q 041936 145 VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR-----KSIKPNASSF 219 (402)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~ 219 (402)
..++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3456677777777777777777777776543 55667777777777777777777777776654 4777777776
Q ss_pred HHHHHHH
Q 041936 220 GALVAGF 226 (402)
Q Consensus 220 ~~l~~~~ 226 (402)
.......
T Consensus 231 ~~y~~~~ 237 (280)
T COG3629 231 ALYEEIL 237 (280)
T ss_pred HHHHHHh
Confidence 6666653
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.47 Score=40.32 Aligned_cols=80 Identities=6% Similarity=0.158 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH-----CCCCCChhhHHH
Q 041936 182 DTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER-----YGMKSGVSMYNV 256 (402)
Q Consensus 182 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 256 (402)
.++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 467788889999999999999999999885 66888999999999999999999999998765 688898888888
Q ss_pred HHHHHH
Q 041936 257 RIHSLC 262 (402)
Q Consensus 257 ll~~~~ 262 (402)
......
T Consensus 233 y~~~~~ 238 (280)
T COG3629 233 YEEILR 238 (280)
T ss_pred HHHHhc
Confidence 777743
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.51 E-value=3.9 Score=37.69 Aligned_cols=166 Identities=8% Similarity=0.076 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 041936 179 PDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRI 258 (402)
Q Consensus 179 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 258 (402)
.|.....+++..+.++..+.-.+.+..+|..-| .+...|..++++|... ..++-..+++++.+..+ .|++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 344455555666666666666666666665543 2445555566655555 44555556665555432 2333333333
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHH
Q 041936 259 HSLCKLRKCAEAKALLDEMLSKGMK-----PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS-GLSPNSSVYFTMVYFMC 332 (402)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~ 332 (402)
..|.+ ++...+..+|.++..+=++ .-...|..+... -..+.+....+...+... |..--...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33333 5555555555555443111 001133333321 123445555555544433 22223334444445555
Q ss_pred ccCChHHHHHHHHHHHhCC
Q 041936 333 KGGDYETALGFCKESIAKG 351 (402)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~ 351 (402)
...++++|.+++....+.+
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 5566666666666555543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.41 E-value=3.1 Score=36.17 Aligned_cols=133 Identities=11% Similarity=0.125 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc--cC----CHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHccCCH
Q 041936 197 SSSAYSILAEMDRKSIKPNASSFGALVAGFYK--EE----KYEDVNKVLQMMERYGM---KSGVSMYNVRIHSLCKLRKC 267 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~ 267 (402)
+++...+++.|.+.|+.-+..+|-+....... .. ...++.++|+.|++... .++-..+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677888888887777666554333332 22 24577888888887542 2334445555443 33333
Q ss_pred ----HHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 268 ----AEAKALLDEMLSKGMKPNS--VTYSHFIYGFCKDGN--FEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 268 ----~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
+.+..+|+.+.+.|...+. .....++..+..... ..++..+++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 4567778888887776543 233333333322222 447888888999988888877776665443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.98 Score=33.23 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=24.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 192 CESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
...|+.+.|++.|.+.+.. .+.....||.-..++.-.|+.++|++=+++..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444555555555444433 123344455444555445555555444444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.35 Score=33.66 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 305 AKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 305 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
..+-++.+....+.|++....+.+++|.+.+++..|.++++-.+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555555555544443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.32 E-value=2.4 Score=37.22 Aligned_cols=225 Identities=13% Similarity=0.103 Sum_probs=125.8
Q ss_pred cCCHHHHHHHHHHhHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 123 ANMTEHAVRTFKEMDEH--KLRHSVGAFNALLLALTIAKDYKEVKRVF----IEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 123 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
..+.++|+..+.+-..+ +......+|..+..+.++.|.+++++..- +-..+...-..-...|-.+.+++-+.-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555443321 00111234445555666666665544321 1111100001122345556666666666
Q ss_pred hhHHHHHHHHHHhC-CCCCC---HhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHccCCH
Q 041936 197 SSSAYSILAEMDRK-SIKPN---ASSFGALVAGFYKEEKYEDVNKVLQMMERYG-----MKSGVSMYNVRIHSLCKLRKC 267 (402)
Q Consensus 197 ~~~a~~~~~~~~~~-g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~ 267 (402)
+.+++.+-..-... |..|. -....++..+....+.++++++.|+...+.. .-....+|..+-..|.+..|+
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 66666665544332 22221 1234456677777888999999998776522 112346788899999999999
Q ss_pred HHHHHHHHHHHHC----CCCCCHH-HHH-----HHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHhHHHHHHHHH
Q 041936 268 AEAKALLDEMLSK----GMKPNSV-TYS-----HFIYGFCKDGNFEEAKKFYRIMSN----SGLSPN-SSVYFTMVYFMC 332 (402)
Q Consensus 268 ~~a~~~~~~~~~~----~~~p~~~-~~~-----~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~l~~~~~ 332 (402)
++|.-+..+..+. ++. |.. .|. .+.-++-..|....|.+.-++..+ .|-++. ......+.+.|.
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 9988877765542 322 221 222 344556677887777777766543 343322 234456777888
Q ss_pred ccCChHHHHHHHHHHH
Q 041936 333 KGGDYETALGFCKESI 348 (402)
Q Consensus 333 ~~g~~~~a~~~~~~~~ 348 (402)
..|+.+.|+.-|+.+.
T Consensus 258 ~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAM 273 (518)
T ss_pred hcccHhHHHHHHHHHH
Confidence 8999998887777654
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.8 Score=35.71 Aligned_cols=184 Identities=11% Similarity=0.083 Sum_probs=111.1
Q ss_pred cchHHHHHHHhcCC---ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhc-CCCCCchHHHHH
Q 041936 40 DKTRAALTLLKSES---NPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKT-RPDLQNERFHAH 115 (402)
Q Consensus 40 ~~~~~~l~~l~~~~---~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ 115 (402)
..+..-+..=.++| --+....+++-...+....... -|..++ .+...+.+|+.+++.... .....+..+...
T Consensus 94 ~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~-~Y~~LV---k~N~~Vv~aL~L~~~~~~~~~Ii~d~evisl 169 (292)
T PF13929_consen 94 RFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSF-NYWDLV---KRNKIVVEALKLYDGLNPDESIIFDEEVISL 169 (292)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccch-HHHHHH---HhhHHHHHHHHHhhccCcccceeeChHHHHH
Confidence 33443333444444 2344555555543333222221 155444 234456777777775432 234566677777
Q ss_pred HHHHHHh-cC-CHHHHHHHHHHhHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHH
Q 041936 116 SIILYGQ-AN-MTEHAVRTFKEMDE-HKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFC 192 (402)
Q Consensus 116 li~~~~~-~~-~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 192 (402)
+++.... .+ ....-.++.+.+.. .+-.++..+...++..+++.+++.+-.++++......+..-|...|..+|+...
T Consensus 170 LL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~ 249 (292)
T PF13929_consen 170 LLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIV 249 (292)
T ss_pred HHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHH
Confidence 7665554 22 22223333344433 234678888888999999999999999999887655455667788999999999
Q ss_pred hcCChhHHHHHHHH-----HHhCCCCCCHhhHHHHHHHHh
Q 041936 193 ESSDSSSAYSILAE-----MDRKSIKPNASSFGALVAGFY 227 (402)
Q Consensus 193 ~~~~~~~a~~~~~~-----~~~~g~~~~~~~~~~l~~~~~ 227 (402)
..|+..-..++.++ +.+.|+..+...-..+-..+.
T Consensus 250 ~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 250 ESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 99998888777764 345566666666665555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.16 E-value=1.7 Score=32.08 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=48.1
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH--HHHHHHHHHHHhcCC
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL--DTYNRVIKAFCESSD 196 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~ 196 (402)
+.+..|+.+.|++.|.+....- +.....||.-..++.-.|+.++|.+-+++..+-.|-+--. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3455666666666666655443 4455566666666666666666666665554433322111 112222334445566
Q ss_pred hhHHHHHHHHHHhCC
Q 041936 197 SSSAYSILAEMDRKS 211 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g 211 (402)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666665555544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.94 Score=35.97 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHhC---CCCCCHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN--SSVYFTMVYFMCKGGDYETALGFCKESIAK---GWVPNFTTMKSL 362 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l 362 (402)
.+..+...|++.|+.++|.+.|.++.+....+. ...+-.+|+.....+++..+...+.++... +-..+...--..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455566666666666666666666665533322 234455566666666666666666555432 111111111111
Q ss_pred HH--HHHcCCChHHHHHHHHHHHhc
Q 041936 363 VT--GLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 363 ~~--~~~~~g~~~~a~~~~~~~~~~ 385 (402)
.. ++...+++.+|.+.|-+....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCcC
Confidence 11 233456777777776665443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.10 E-value=3 Score=34.80 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCChHHHHHHHHHH
Q 041936 292 FIYGFCKDGNFEEAKKFYRIMSNSGLSPN---SSVYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
+.+-|.+.|.+..|..-+++|.+. ..-+ ...+-.+..+|...|-.++|...-+-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 445566666666666666666655 1111 233344455566666666655544433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.46 Score=40.53 Aligned_cols=105 Identities=11% Similarity=0.069 Sum_probs=75.9
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041936 245 YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK---GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS 321 (402)
Q Consensus 245 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 321 (402)
.|.+....+...++..-....+++.+...+-++... ...|+...+ ..++.+. .-++++++.++..=++-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 445566666777777777778888888888887754 112222222 2333333 34677888888888888999999
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 322 SVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
.+++.+|+.+.+.+++.+|.++...|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887764
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=93.74 E-value=3.9 Score=34.87 Aligned_cols=132 Identities=7% Similarity=0.061 Sum_probs=70.4
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES--SDSSSAYSILAEMDRK-SIKPNASSFGALVAGFYKEEKYEDVNK 237 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~ 237 (402)
+.+|..+|+..--+..+--|..+...+++..... .....-.++.+-+... |-.++..+...++..++..+++.+..+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4555555553211112344555555555554441 1222333333333322 345566666677777777777777777
Q ss_pred HHHHHHHC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHH-----HHHCCCCCCHHHHHHH
Q 041936 238 VLQMMERY-GMKSGVSMYNVRIHSLCKLRKCAEAKALLDE-----MLSKGMKPNSVTYSHF 292 (402)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~p~~~~~~~l 292 (402)
+++..... +...|...|..+|......|+..-...+.++ +++.++..+...-..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 77666554 4455666677777777777777666666654 2334444444443333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.71 E-value=3.2 Score=33.85 Aligned_cols=200 Identities=17% Similarity=0.069 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH-HHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEH-KLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL-DTYNRVI 188 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li 188 (402)
.........+...+++..+...+...... ........+......+...++...+...+...... .++. .......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 136 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL---DPDPDLAEALLA 136 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC---CCCcchHHHHHH
Confidence 44445555566666666666666655431 12344445555555555666666666666655321 1111 1222222
Q ss_pred H-HHHhcCChhHHHHHHHHHHhCCC--CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHcc
Q 041936 189 K-AFCESSDSSSAYSILAEMDRKSI--KPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKS-GVSMYNVRIHSLCKL 264 (402)
Q Consensus 189 ~-~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~ 264 (402)
. .+...|+++.+...+.+...... ......+......+...++.+.+...+....... .. ....+..+...+...
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHc
Confidence 2 45566666666666666544211 0122233333333455566666666666665543 12 345555555566666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 265 RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
++.+.+...+......... ....+..+...+...+..+.+...+......
T Consensus 216 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666554211 1223333333333445566666666655553
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.69 E-value=2.9 Score=38.39 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 290 SHFIYGFCKDGNFEEAKKFYRIMSNSGLS-PNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
..+..++-+.|+.++|++.+.+|.+.... -+......|+.++...+.+.++..++.+.-+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 34566666778888888888888764222 23446667788888888888888888776443
|
The molecular function of this protein is uncertain. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.63 E-value=1.3 Score=37.94 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=91.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH----------hCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCChh
Q 041936 186 RVIKAFCESSDSSSAYSILAEMD----------RKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG---MKSGVS 252 (402)
Q Consensus 186 ~li~~~~~~~~~~~a~~~~~~~~----------~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 252 (402)
.|.++|.....|+.-....-.+- ..|.+....+...++..-....+++.++..+-++.... ..++..
T Consensus 24 ~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~ 103 (418)
T KOG4570|consen 24 LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT 103 (418)
T ss_pred hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc
Confidence 45666776767765444332222 23556666777777777777888999998888776532 223332
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041936 253 MYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG 316 (402)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 316 (402)
.+ ++++.+ ..-++++++.++..=+.-|+-||..+++.+|+.+.+.+++.+|..+...|....
T Consensus 104 ~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 104 IH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HH-HHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22 233333 335788999999998999999999999999999999999999999988887653
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.58 E-value=5.9 Score=36.44 Aligned_cols=92 Identities=12% Similarity=0.041 Sum_probs=62.7
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH-HHHhcCCHHHHHHH
Q 041936 54 NPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII-LYGQANMTEHAVRT 132 (402)
Q Consensus 54 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~A~~~ 132 (402)
-+.+...+++.+..+ ...|+..|..-+..+-+.+.+.+...+|.+|. ...+.++.+|-.... -|-...+++.|..+
T Consensus 86 i~~rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l-~~Hp~~~dLWI~aA~wefe~n~ni~saRal 162 (568)
T KOG2396|consen 86 IPNRIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAML-AKHPNNPDLWIYAAKWEFEINLNIESARAL 162 (568)
T ss_pred HHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH-HhCCCCchhHHhhhhhHHhhccchHHHHHH
Confidence 345667777777654 33488899999999999898999999999998 234444444443333 34444458999999
Q ss_pred HHHhHhCCCCCCHHHHH
Q 041936 133 FKEMDEHKLRHSVGAFN 149 (402)
Q Consensus 133 ~~~~~~~~~~~~~~~~~ 149 (402)
|..-.+.+ +.++..|-
T Consensus 163 flrgLR~n-pdsp~Lw~ 178 (568)
T KOG2396|consen 163 FLRGLRFN-PDSPKLWK 178 (568)
T ss_pred HHHHhhcC-CCChHHHH
Confidence 98877765 44444443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=6.4 Score=36.05 Aligned_cols=147 Identities=10% Similarity=0.020 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHC-CCCCC-hhhHHHHHHHHHc---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 232 YEDVNKVLQMMERY-GMKSG-VSMYNVRIHSLCK---------LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 232 ~~~a~~~~~~~~~~-~~~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
.+.|..+|.+.... .+.|+ ...|..+..++.. ..+..+|.++-++..+.+.. |......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 45666777776621 12333 3333333332221 23445666777777766433 6666666666667777
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChHHHHHH
Q 041936 301 NFEEAKKFYRIMSNSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAKG-WVPNFTTMKSLVTGLAGASKVSEAKEL 378 (402)
Q Consensus 301 ~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 378 (402)
+.+.|..+|++.... .|| ..+|......+.-.|+.++|.+.+++..+.. .+.-.......+..|+.. ..++|+.+
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 788888888888774 344 3444444455566788888888888866652 111223333344455554 45666666
Q ss_pred HHHH
Q 041936 379 IGLV 382 (402)
Q Consensus 379 ~~~~ 382 (402)
+-+-
T Consensus 430 ~~~~ 433 (458)
T PRK11906 430 YYKE 433 (458)
T ss_pred Hhhc
Confidence 5443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.25 E-value=11 Score=38.62 Aligned_cols=86 Identities=13% Similarity=0.052 Sum_probs=53.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
|.+..+-+.....+++|.-.|+..-+. ...+.+|...|+|.+|..+..++....-+ -..+-..|+.-+..
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHH
Confidence 333344444556666666666654321 34567788888888888888777542110 01122567777788
Q ss_pred cCChHHHHHHHHHHHh
Q 041936 334 GGDYETALGFCKESIA 349 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~ 349 (402)
.+++-+|-++..+...
T Consensus 1012 ~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLS 1027 (1265)
T ss_pred cccchhHHHHHHHHhc
Confidence 8888888888877765
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.16 E-value=7.7 Score=36.52 Aligned_cols=118 Identities=8% Similarity=-0.043 Sum_probs=80.8
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHH-HhcCCHHHHHH
Q 041936 53 SNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILY-GQANMTEHAVR 131 (402)
Q Consensus 53 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~A~~ 131 (402)
.+.+.+...+..+....+. -.-.|......=.+.|..+.+.++|+... .+.+.+...|...+..+ ...|+.+...+
T Consensus 59 ~~~~~~r~~y~~fL~kyPl--~~gyW~kfA~~E~klg~~~~s~~Vfergv-~aip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSKYPL--CYGYWKKFADYEYKLGNAENSVKVFERGV-QAIPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred hHHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3444445555555433222 22345566666677889999999999988 56677777777666533 35678888888
Q ss_pred HHHHhHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 132 TFKEMDEH-KL-RHSVGAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 132 ~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
.|+..... |. -.+...|...|..-...+++.....+|+.+++
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 88887653 21 23456788888888888999999999999864
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.12 E-value=17 Score=40.36 Aligned_cols=314 Identities=9% Similarity=0.025 Sum_probs=167.1
Q ss_pred cCCChhHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 041936 51 SESNPEKILEICRAAALTP-ESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHA 129 (402)
Q Consensus 51 ~~~~~~~al~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 129 (402)
+.+.+.+|+..++.-...+ ........|..+-..|+..++++...-+...-. .+..++ .-|......|+++.|
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~-~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLY-QQILEHEASGNWADA 1468 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHH-HHHHHHHhhccHHHH
Confidence 4567778888777632111 111223345555558999999999887776422 122333 344457788999999
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHH
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV-IKAFCESSDSSSAYSILAEMD 208 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~ 208 (402)
...|+.+.+.+ ++...+++.++......|.++.++-..+-.... ..+....++++ ..+--+.++++.......
T Consensus 1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 99999999886 566788888888888888888888766655322 23333333332 344467777777766655
Q ss_pred hCCCCCCHhhHHHH--HHHHhcc--CCHHHHHHHHHHHHHCCCCC---------ChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 209 RKSIKPNASSFGAL--VAGFYKE--EKYEDVNKVLQMMERYGMKS---------GVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 209 ~~g~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~~~~~~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
+. +..+|... +....+. .+.-.-.+..+.+.+.-+.| =...|..++....-.. -....+
T Consensus 1543 ~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e----l~~~~~ 1614 (2382)
T KOG0890|consen 1543 DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE----LENSIE 1614 (2382)
T ss_pred cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH----HHHHHH
Confidence 11 22233222 2222222 22222222333333221111 0123444443332211 111111
Q ss_pred HHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCC-----CHHhHHHHHHHHHccCChHHHHHH
Q 041936 276 EMLSKGMKPNS------VTYSHFIYGFCKDGNFEEAKKFYR-IMSNSGLSP-----NSSVYFTMVYFMCKGGDYETALGF 343 (402)
Q Consensus 276 ~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~ 343 (402)
... +..++. .-|..-+..-....+..+-+--++ .+......| -..+|-...+.....|+++.|...
T Consensus 1615 ~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1615 ELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred Hhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 111 112221 112222221111111111111111 111111111 246788888888889999999988
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC
Q 041936 344 CKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKN 389 (402)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 389 (402)
+-++.+.+ . +..+--....+...|+...|+.++++..+...|+
T Consensus 1693 ll~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1693 LLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 87777765 3 3445556677888999999999999988764444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.00 E-value=6.9 Score=35.58 Aligned_cols=122 Identities=14% Similarity=0.130 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCC----HHhHHHHHH--HHHc
Q 041936 267 CAEAKALLDEMLSKGMKPNSVTYSHFI----YGFCK---DGNFEEAKKFYRIMSNSGLSPN----SSVYFTMVY--FMCK 333 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~p~~~~~~~l~----~~~~~---~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~--~~~~ 333 (402)
-++|+++++.+.+-. .-|..+-|.+. ..|.+ ...+.+-.++-+-+.+.|+.|- ...-|.+.+ .+..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 556666666665531 11333322222 12221 2234444444445556677653 333444443 3456
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHH
Q 041936 334 GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNE 395 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 395 (402)
.|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|.+++..+ |||..+|++
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L----P~n~~~~ds 530 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL----PPNERMRDS 530 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC----CCchhhHHH
Confidence 8888888765555544 5889999999999999999999999998764 457666664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.74 E-value=9.8 Score=36.62 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHh
Q 041936 372 VSEAKELIGLVKE 384 (402)
Q Consensus 372 ~~~a~~~~~~~~~ 384 (402)
+..|.++++...+
T Consensus 525 ~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 525 LHLAKRYYDQASE 537 (552)
T ss_pred hHHHHHHHHHHHh
Confidence 4556666665554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.58 E-value=3.8 Score=31.57 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=20.1
Q ss_pred cCCcchHHHHHHHhh-cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 041936 88 ANYFNGISQYLEELK-TRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 88 ~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 137 (402)
.++.+++..++..+. -++..+...++...+ +...|++.+|.++|+.+.
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELE 71 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHh
Confidence 344444444444444 222222333333222 444445555555555443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.57 E-value=1.6 Score=34.87 Aligned_cols=91 Identities=20% Similarity=0.097 Sum_probs=60.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 259 HSLCKLRKCAEAKALLDEMLSKGMKPN-----SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
+-+.+.|++++|..-|...++. +++. ...|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 3466788888888888888876 2221 234555566777888888888888877775422 12222233456777
Q ss_pred cCChHHHHHHHHHHHhCC
Q 041936 334 GGDYETALGFCKESIAKG 351 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~ 351 (402)
...+++|+.-|+.+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 888888888888888763
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.44 E-value=3.3 Score=32.88 Aligned_cols=62 Identities=5% Similarity=-0.060 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPD--LQNERFHAHSIILYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 137 (402)
..+..+...+.+.|+.+.|.+.+..+..... .....++..+|+.....+++..+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555666666666666666666666653222 2223445556666666666666666655544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.28 E-value=2.8 Score=31.79 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=32.1
Q ss_pred hcCCcchHHHHHHHhh-cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 041936 87 EANYFNGISQYLEELK-TRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHK 140 (402)
Q Consensus 87 ~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 140 (402)
..++.+++..++..|. -++..+...++...+ +...|++++|.++|+.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 3567777777777666 334444444444444 667777777777777776543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.37 Score=26.47 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=9.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 041936 185 NRVIKAFCESSDSSSAYSILAE 206 (402)
Q Consensus 185 ~~li~~~~~~~~~~~a~~~~~~ 206 (402)
..|...|.+.|++++|+++|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.18 E-value=4.6 Score=31.54 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=62.3
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVS-MYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSV-TYSHF-- 292 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l-- 292 (402)
..|...++ +.+.++.++|+.-|..+.+.|...-.. .-..........|+...|...|+++-.....|-.. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 345556666666666666654221110 11111223445566666666666665543333222 11111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.-.+...|.++......+-+...+-......-..|.-+-.+.|++.+|.++|..+.+.
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1123345556555555555444433333333445555555666666666666655543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.37 Score=26.46 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677788888888888888888744
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.56 Score=25.04 Aligned_cols=29 Identities=17% Similarity=-0.074 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKEKF 386 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 386 (402)
.+..+...+.+.|++++|++.|++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 44555566666666666666666666543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.03 E-value=4.6 Score=31.18 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=63.5
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 118 ILYGQANMTEHAVRTFKEMDEHKLRHSVGAFN-ALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
..-.+.++.+++..++..+.-. .|...... .-...+...|++.+|.++|+++... .|.......|+..|.....
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcC
Confidence 3445677888888888888764 34333222 2344567888999999999988543 3444444555555555444
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041936 197 SSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNK 237 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 237 (402)
-..-..+-+++.+.+-.|+. - .++..+....+...|..
T Consensus 93 D~~Wr~~A~evle~~~d~~a--~-~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADPDA--R-ALVRALLARADLEPAHE 130 (160)
T ss_pred ChHHHHHHHHHHhcCCChHH--H-HHHHHHHHhccccchhh
Confidence 34444444556666533333 2 33444444444444443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.67 E-value=15 Score=36.47 Aligned_cols=226 Identities=12% Similarity=0.030 Sum_probs=122.6
Q ss_pred HHHcCCHHHHHHHHHHchhhcCCCCCH-------HHHHHHH-HHHHhcCChhHHHHHHHHHHhC----CCCCCHhhHHHH
Q 041936 155 LTIAKDYKEVKRVFIEFPKTYGIKPDL-------DTYNRVI-KAFCESSDSSSAYSILAEMDRK----SIKPNASSFGAL 222 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li-~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~l 222 (402)
.....++++|..++.+.....+ .|+. ..++.+- ......|++++|.++.+..... -..+....+..+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~-~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLK-APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhC-cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 4557889999999988844322 2221 1233332 2334578899999998877654 123345567777
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCChhhH---HHHH--HHHHccCCH--HHHHHHHHHHHHC--CCCC----CHHHH
Q 041936 223 VAGFYKEEKYEDVNKVLQMMERYGMKSGVSMY---NVRI--HSLCKLRKC--AEAKALLDEMLSK--GMKP----NSVTY 289 (402)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll--~~~~~~~~~--~~a~~~~~~~~~~--~~~p----~~~~~ 289 (402)
..+..-.|++++|..+.....+..-.-++..+ ..+. ..+...|.. .+....|...... +-.| -..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 88888899999999988877654222333333 2222 234455632 2223333333222 1111 22344
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHhH--HHHHHHHHccCChHHHHHHHHHHHhCCC----CCCHHHHHHH
Q 041936 290 SHFIYGFCKD-GNFEEAKKFYRIMSNSGLSPNSSVY--FTMVYFMCKGGDYETALGFCKESIAKGW----VPNFTTMKSL 362 (402)
Q Consensus 290 ~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l 362 (402)
..+..++.+. +...++..-+.-.......|-...+ ..|+......|+.++|...+.++..... .++..+-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4455555442 1222232333222222222222222 3677888889999999999988876522 2222222222
Q ss_pred HHH--HHcCCChHHHHHHHHH
Q 041936 363 VTG--LAGASKVSEAKELIGL 381 (402)
Q Consensus 363 ~~~--~~~~g~~~~a~~~~~~ 381 (402)
+.. ....|+.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 222 3457888887777665
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.53 E-value=12 Score=34.81 Aligned_cols=181 Identities=9% Similarity=0.039 Sum_probs=130.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGA 221 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 221 (402)
+.|....-+++..+..+..+.-++-+..+|..- ..+-..|..++.+|..+ ..+.-..+++++.+..+. |.+.-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 567778888999999999998899999988643 44777899999999998 678888999998887543 4444444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCC-----ChhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 041936 222 LVAGFYKEEKYEDVNKVLQMMERYGMKS-----GVSMYNVRIHSLCKLRKCAEAKALLDEMLSK-GMKPNSVTYSHFIYG 295 (402)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~ 295 (402)
|...| ..++.+.+...|.++...-++. -...|..+.... ..+.+....+..++... |..--.+.+.-+-..
T Consensus 138 La~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 44444 4588899999999887654431 123566555432 35777888888877754 444456667777788
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 296 FCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
|....++++|++++..+.+..-+ |...-..++.-+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 88999999999999999887533 555555555544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.31 Score=26.45 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=11.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHH
Q 041936 142 RHSVGAFNALLLALTIAKDYKEV 164 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a 164 (402)
|-+...|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 34444555555555555555544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.31 E-value=2.8 Score=33.68 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=59.3
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhc--CCCCCHHHHHHHHHHHHhcCCh
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTY--GIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~p~~~~~~~li~~~~~~~~~ 197 (402)
+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++.+...-. +-.+|+..+..|+..+.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444454 778888888888775555555555555554 778899999888775432 2367888999999999999999
Q ss_pred hHHHH
Q 041936 198 SSAYS 202 (402)
Q Consensus 198 ~~a~~ 202 (402)
+.|.-
T Consensus 195 e~AYi 199 (203)
T PF11207_consen 195 EQAYI 199 (203)
T ss_pred hhhhh
Confidence 88753
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.27 Score=26.66 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=17.9
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 041936 345 KESIAKGWVPNFTTMKSLVTGLAGASKVSEAK 376 (402)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 376 (402)
++.++.. +-+...|..+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444433 445666666666666666666654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.19 E-value=16 Score=35.75 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHH-hcCCcchHHHHHHHhhcCCCC---Cch--HHHHHHHHHHHhcCCHHHHHHHHHHhHhCC----CCCC
Q 041936 75 RLAFSIAINKLS-EANYFNGISQYLEELKTRPDL---QNE--RFHAHSIILYGQANMTEHAVRTFKEMDEHK----LRHS 144 (402)
Q Consensus 75 ~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~---~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~~ 144 (402)
..++-.+...+. ...+++.|+..+++....... .+. .....++..+.+.+... |...+++..+.- ..+-
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 345555666665 678999999999987622211 111 12234456666666665 998888866532 1122
Q ss_pred HHHHHHH-HHHHHHcCCHHHHHHHHHHchhhcC--CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhCC--------
Q 041936 145 VGAFNAL-LLALTIAKDYKEVKRVFIEFPKTYG--IKPDLDTYNRVIKAFC--ESSDSSSAYSILAEMDRKS-------- 211 (402)
Q Consensus 145 ~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~g-------- 211 (402)
...+..+ +..+...++...|.+.++.+..... ..|-...+..++.+.. ..+..+++.+.++++....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 2333333 3333344799999999988865443 2333444445555544 3455677777777764322
Q ss_pred -CCCCHhhHHHHHHHH--hccCCHHHHHHHHHHH
Q 041936 212 -IKPNASSFGALVAGF--YKEEKYEDVNKVLQMM 242 (402)
Q Consensus 212 -~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 242 (402)
..|-..+|..+++.+ ...|+++.+...++++
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 133455677776655 4567777777666555
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.90 E-value=9.4 Score=32.62 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=47.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHhH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS-----GLSPNSSVY 324 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~ 324 (402)
++.....|..+|.+.+|.++.++....+ +.+...+-.+++.+...||--.+.+-++++.+. |+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 4455667778888888888888877653 336667777888888888877777766665432 666555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.52 E-value=1.4 Score=38.22 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=34.7
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041936 259 HSLCKLRKCAEAKALLDEMLSKGMKP-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 314 (402)
+-|.+.|.+++|++.|...+.. .| +.+++..-..+|.+...+..|+.-....+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5566777777777777766554 34 666666667777777777666655554443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.32 E-value=6.5 Score=29.86 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=33.3
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHchhh
Q 041936 121 GQANMTEHAVRTFKEMDEHKLRHSVGAF-NALLLALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 174 (402)
...++++++..+++.|.-. .|+..-. ..-...+...|++++|.++|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3477888888888887654 2332221 12234466788888888888888543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.73 Score=24.67 Aligned_cols=28 Identities=18% Similarity=-0.003 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
+|..+..+|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4445555555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.17 E-value=12 Score=35.37 Aligned_cols=44 Identities=7% Similarity=-0.069 Sum_probs=22.1
Q ss_pred HcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 157 IAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4455555555544331 3344555555555555555555555444
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.62 Score=24.61 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=18.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhcCCC
Q 041936 361 SLVTGLAGASKVSEAKELIGLVKEKFTK 388 (402)
Q Consensus 361 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 388 (402)
.+..++.+.|++++|.+.|+++.+.+|.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455666677777777777777766543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.81 E-value=4.2 Score=32.68 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCChHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK---GWVPNFTTMKSLVTGLAGASKVSEA 375 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 375 (402)
.|.+.|-.+...+.--++.....+...|. ..+.+++..++-+..+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444544443333444334433333 34455555555554443 2244555555555555555555544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.75 E-value=5.4 Score=28.01 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHH
Q 041936 339 TALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 397 (402)
+..+-+..+...++.|++....+.+++|.+.+++..|.++|+-++.+..+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 44445555555555666666666666666666666666666666555444333454444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.51 E-value=9.2 Score=36.14 Aligned_cols=133 Identities=10% Similarity=0.028 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
...+.++..+.+.|..++|+++- ++... -.....+.|+++.|.++..+. .+..-|..|.++.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHH
Confidence 34566666677777776665531 11111 112245677777777766553 3445677788888
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDV 235 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 235 (402)
...+++..|.+.|.... -|..|+-.+...|+-+....+-....+.|. .|....+|...|+++++
T Consensus 677 l~~~~l~lA~EC~~~a~----------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 677 LSAGELPLASECFLRAR----------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEEC 740 (794)
T ss_pred hhcccchhHHHHHHhhc----------chhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHH
Confidence 88888888887776652 155666666777777766666666666652 22333455667888887
Q ss_pred HHHHHHH
Q 041936 236 NKVLQMM 242 (402)
Q Consensus 236 ~~~~~~~ 242 (402)
.+++..-
T Consensus 741 ~~lLi~t 747 (794)
T KOG0276|consen 741 LELLIST 747 (794)
T ss_pred HHHHHhc
Confidence 7776544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.40 E-value=3.8 Score=28.40 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041936 266 KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMS 313 (402)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 313 (402)
|.-++.+-++.+......|++....+.+++|-+.+|+..|.++++-.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334455555555555555666666666666666666666666666555
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.18 Score=38.42 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=52.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 041936 257 RIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGD 336 (402)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 336 (402)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 55666667777777777777776654556667777777777777666666666511 11222445666667777
Q ss_pred hHHHHHHHHHH
Q 041936 337 YETALGFCKES 347 (402)
Q Consensus 337 ~~~a~~~~~~~ 347 (402)
++++..++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77777766654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.91 E-value=15 Score=31.98 Aligned_cols=97 Identities=14% Similarity=0.055 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHhHHHHHHH-HHccCChHHHHHHHHHHHhCCCCCC----HH
Q 041936 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSPNSSVYFTMVYF-MCKGGDYETALGFCKESIAKGWVPN----FT 357 (402)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~----~~ 357 (402)
..+.....-|++.||.+.|++.+.+..++ |.+.|...+.+-+.. |....-+.+-.+..+.+.+.|..-+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34555666777777777777766655443 566665544333222 2222223344444444555543222 22
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
+|..+ .+....++.+|..+|-+....
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHccc
Confidence 33333 233445677777766665543
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.77 E-value=3 Score=30.45 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
+..+-++.+..-.+.|++.....-+++|.+.+|+..|.++|+-.+.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444444444555666666666666666666666666666555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.53 E-value=10 Score=29.65 Aligned_cols=136 Identities=7% Similarity=0.140 Sum_probs=78.7
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.+.+..+.+.+++|+...+..+++.+.+.|++.....++.- ++-+|.......+-.+. +....+.++=-+|.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 45556666778888888888888888888887766665532 33445444433332222 222334444334433
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 210 KSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 210 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
+ + ...+..++..+...|++-+|.++.+.... .+......++.+..+.+|...-..+|+-..+.
T Consensus 87 R-L---~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 87 R-L---GTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred H-h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 0 11355667777788888888877766532 22222345666666666666655555555443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.68 E-value=1.5 Score=24.65 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 357 TTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777888888888888888887765
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=18 Score=31.27 Aligned_cols=17 Identities=6% Similarity=-0.375 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHHcCC
Q 041936 144 SVGAFNALLLALTIAKD 160 (402)
Q Consensus 144 ~~~~~~~l~~~~~~~~~ 160 (402)
+...-...+.++...|+
T Consensus 67 d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 67 NPIERDIGADILSQLGM 83 (280)
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 33444444444555544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.96 E-value=0.34 Score=36.91 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=22.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041936 189 KAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQ 240 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (402)
..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3333444444444444444443333334444444444444444444444433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.84 E-value=2.4 Score=22.55 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=6.3
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 041936 152 LLALTIAKDYKEVKRVFI 169 (402)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~ 169 (402)
..+|...|++++|+..|+
T Consensus 8 g~~~~~~~~~~~A~~~~~ 25 (34)
T PF00515_consen 8 GNAYFQLGDYEEALEYYQ 25 (34)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHH
Confidence 333333333333333333
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.79 E-value=1.9 Score=24.20 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
+++.|...|...|++++|.+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=86.70 E-value=12 Score=34.45 Aligned_cols=87 Identities=8% Similarity=-0.019 Sum_probs=41.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 041936 297 CKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAK 376 (402)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 376 (402)
...|+++.+...+...... +.....+..++++...+.|++++|...-+-|....+. +++.........-..|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 4455565555555544332 2223344555555555566666666555555544322 3333332222333445555555
Q ss_pred HHHHHHHhc
Q 041936 377 ELIGLVKEK 385 (402)
Q Consensus 377 ~~~~~~~~~ 385 (402)
-.|+++...
T Consensus 412 ~~wk~~~~~ 420 (831)
T PRK15180 412 HYWKRVLLL 420 (831)
T ss_pred HHHHHHhcc
Confidence 555555443
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.63 E-value=39 Score=34.23 Aligned_cols=37 Identities=8% Similarity=0.078 Sum_probs=17.5
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 041936 261 LCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFC 297 (402)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 297 (402)
|......+-+..+++.+....-.++....+.++..|+
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 3444455555555555554433344444444444443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.44 E-value=20 Score=30.75 Aligned_cols=57 Identities=11% Similarity=-0.021 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
+.....|..+|.+.+|.++.+...+-. +.+...+..++..+...||--.+.+-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334455666666666666665554322 334455556666666666655555555544
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.86 E-value=2 Score=22.85 Aligned_cols=27 Identities=19% Similarity=0.009 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555666666666666665554
|
... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.63 E-value=3 Score=22.04 Aligned_cols=18 Identities=22% Similarity=0.229 Sum_probs=6.5
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 041936 153 LALTIAKDYKEVKRVFIE 170 (402)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~ 170 (402)
.++...|++++|++.|++
T Consensus 9 ~~~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 9 QAYYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 333333333333333333
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.56 E-value=34 Score=32.51 Aligned_cols=310 Identities=9% Similarity=0.066 Sum_probs=183.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHH
Q 041936 70 ESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFN 149 (402)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 149 (402)
....+-..+..++.--....+.+.+..++..+. ...|.-...|......=.+.|..+.+..+|++-.+ +++.+...|.
T Consensus 40 ~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL-~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~ 117 (577)
T KOG1258|consen 40 NDSLDFDAWTTLIQENDSIEDVDALREVYDIFL-SKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWL 117 (577)
T ss_pred cchhcccchHHHHhccCchhHHHHHHHHHHHHH-hhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHH
Confidence 344455667777766666666677777787777 44566677788888888889999999999999875 4577777787
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHchhhcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH-
Q 041936 150 ALLLALT-IAKDYKEVKRVFIEFPKTYGIK-PDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGF- 226 (402)
Q Consensus 150 ~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~- 226 (402)
..+..+. ..|+.+...+.|+....-.|.. .....|...|.--..++++.....+|++.++.- ..-|+....-|
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~ 193 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFK 193 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHH
Confidence 7665544 4678888888888886655543 234567778887788899999999999998752 22233222222
Q ss_pred --hcc------CCHHHHHHHHHHHHHC---C-CCCChhhHHHHHHHHHc-cCCHHH------------------------
Q 041936 227 --YKE------EKYEDVNKVLQMMERY---G-MKSGVSMYNVRIHSLCK-LRKCAE------------------------ 269 (402)
Q Consensus 227 --~~~------~~~~~a~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~-~~~~~~------------------------ 269 (402)
... ...+++.++-...... . ..+.......-+.--.. .+..++
T Consensus 194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~ 273 (577)
T KOG1258|consen 194 QLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEE 273 (577)
T ss_pred HHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 222 2344444444333321 0 01111111111111110 011111
Q ss_pred HHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHH
Q 041936 270 AKALLDEMLSK---GMKP----NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALG 342 (402)
Q Consensus 270 a~~~~~~~~~~---~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 342 (402)
..-.|+.-... .+.| +..+|..-+.--...|+.+.+.-+|++..-. +..=...|-..+.-....|+.+-|..
T Consensus 274 kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~ 352 (577)
T KOG1258|consen 274 KRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANN 352 (577)
T ss_pred HHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHH
Confidence 11112221111 1222 4557888888888889999888888887642 11123445555555555688888877
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 041936 343 FCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKF 386 (402)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 386 (402)
++....+--++-.+.+--.-....-..|+++.|..+++.+.+..
T Consensus 353 ~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 353 VLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred HHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 77666655433333332222223344678888888888888765
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=85.11 E-value=23 Score=30.21 Aligned_cols=92 Identities=10% Similarity=0.051 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAF 191 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 191 (402)
+...-|.+++..+++.+++...-+--+.--+........-|-.|.+.+++..+.++-....+..+ .-+...|..++..|
T Consensus 85 LcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 85 LCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELY 163 (309)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHH
Confidence 44455888999999999888776654422223334455556678899999998888888765422 22334477777766
Q ss_pred Hh-----cCChhHHHHHH
Q 041936 192 CE-----SSDSSSAYSIL 204 (402)
Q Consensus 192 ~~-----~~~~~~a~~~~ 204 (402)
.. .|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 65 58888888876
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.81 E-value=23 Score=29.99 Aligned_cols=48 Identities=6% Similarity=-0.014 Sum_probs=21.7
Q ss_pred CcchHHHHHHHhhcCCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 041936 90 YFNGISQYLEELKTRPDLQNE---RFHAHSIILYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~ 137 (402)
..++|+.-|++.......... .....++..+.+.|++++....|.+|.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 455555555554422111111 223334555555555555555555543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.69 E-value=17 Score=33.55 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=21.2
Q ss_pred HHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 365 GLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 365 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
.|...|++-.|.+.|.+....+..|...|--|.++|
T Consensus 344 ~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 345556666666666666665666666665555443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=84.62 E-value=43 Score=32.96 Aligned_cols=324 Identities=8% Similarity=0.024 Sum_probs=175.7
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCC-CCchHHHHHHH
Q 041936 39 KDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPD-LQNERFHAHSI 117 (402)
Q Consensus 39 ~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li 117 (402)
+..+..+.+.+. .|++..+.++...+... +.. .-..|..+...+. ...+++....++. .+. +....+-...+
T Consensus 34 r~~f~~A~~a~~-~g~~~~~~~~~~~l~d~-pL~-~yl~y~~L~~~l~-~~~~~ev~~Fl~~---~~~~P~~~~Lr~~~l 106 (644)
T PRK11619 34 RQRYQQIKQAWD-NRQMDVVEQLMPTLKDY-PLY-PYLEYRQLTQDLM-NQPAVQVTNFIRA---NPTLPPARSLQSRFV 106 (644)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHhccCC-CcH-hHHHHHHHHhccc-cCCHHHHHHHHHH---CCCCchHHHHHHHHH
Confidence 456777777666 55788887776655322 221 2223333322221 2245555555555 333 34445555556
Q ss_pred HHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 118 ILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
..+.+.++++..++.+.. .+.+...-.....+....|+.++|......+-... ......++.++..+.+.|..
T Consensus 107 ~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g--~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 107 NELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG--KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCChHHHHHHHHHHHcCCC
Confidence 667788888877773322 14566666677888889999888877776663332 33456799999999987766
Q ss_pred hHH--HHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH---------CCCCCChhhHHHHHHHHH--cc
Q 041936 198 SSA--YSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER---------YGMKSGVSMYNVRIHSLC--KL 264 (402)
Q Consensus 198 ~~a--~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~ll~~~~--~~ 264 (402)
... .+-++.+...| +...-..+...+. .+.....+.+..+.. ..++++...-..++.++. ..
T Consensus 180 t~~d~w~R~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar 254 (644)
T PRK11619 180 DPLAYLERIRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVAR 254 (644)
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHH
Confidence 543 33344444443 2222222332221 111111111111110 111223211221222222 34
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHH
Q 041936 265 RKCAEAKALLDEMLSKG-MKPNS--VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 265 ~~~~~a~~~~~~~~~~~-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 341 (402)
.+.+.|..++....... ..+.. ..+..+.......+..+++...+....... .+......-+..-...++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 56788999998875442 22222 233444433334333566777776654332 24444555555556888999988
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 342 GFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
..+..|-... .-...-.--+.+++...|+.++|...|+.+..
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888875532 22334444566777778999999999998754
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.47 E-value=26 Score=30.30 Aligned_cols=235 Identities=11% Similarity=0.102 Sum_probs=148.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCCHh
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS----SSAYSILAEMDRKSIKPNAS 217 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~g~~~~~~ 217 (402)
.++.......+.++...|..+ +...+..+.+ .+|...-...+.++.+.|+. +++...+..+... .++..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQD-VFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcch-HHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 566667777777787777643 3334444433 34666666677777777764 4677777776443 45667
Q ss_pred hHHHHHHHHhccCCH-----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041936 218 SFGALVAGFYKEEKY-----EDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHF 292 (402)
Q Consensus 218 ~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 292 (402)
+-...+.+++..+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+.+. +|...-...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A 179 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHH
Confidence 776777777665432 233344433333 3466666777888888887 4566666666653 354555555
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 041936 293 IYGFCKDG-NFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASK 371 (402)
Q Consensus 293 ~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (402)
+.++...+ +...+...+..+.. .++..+-...+.++.+.|+. .+...+-+..+.+ + .....+.++.+.|.
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCC
Confidence 66666543 24466676666664 35777788888899998884 5666666666543 2 23467888899998
Q ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHhcCC
Q 041936 372 VSEAKELIGLVKEKFTKNVDTWNEIEAGLP 401 (402)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 401 (402)
. +|...+..+.+..+ |...-...+.+|.
T Consensus 251 ~-~a~p~L~~l~~~~~-d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 K-TLLPVLDTLLYKFD-DNEIITKAIDKLK 278 (280)
T ss_pred H-hHHHHHHHHHhhCC-ChhHHHHHHHHHh
Confidence 5 68888888887544 6665555555543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.99 E-value=22 Score=29.11 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
+.+++-+.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +.--|+++-|.+-+...
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHH
Confidence 45555555566666677777777766665542222222232222 22345566665555444
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.87 E-value=46 Score=32.64 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=33.6
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh---cC
Q 041936 225 GFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGM-KPNSVTYSHFIYGFCK---DG 300 (402)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~---~~ 300 (402)
.+.-.|.++.|.+.+-+ ..+...+.+.+...+..|.-.+-.+... ..+..... .|...-+..||..|.+ ..
T Consensus 267 ~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 267 VLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 34455667777766655 1122344444444443332222111111 22221100 1111446667777765 45
Q ss_pred CHHHHHHHHHHHHhC
Q 041936 301 NFEEAKKFYRIMSNS 315 (402)
Q Consensus 301 ~~~~a~~~~~~m~~~ 315 (402)
+..+|.+++--+...
T Consensus 342 d~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 342 DPREALQYLYLICLF 356 (613)
T ss_dssp -HHHHHHHHHGGGGS
T ss_pred CHHHHHHHHHHHHHc
Confidence 677777777766654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=82.85 E-value=3.2 Score=21.51 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHhcCCCChhhHHHHHh
Q 041936 370 SKVSEAKELIGLVKEKFTKNVDTWNEIEA 398 (402)
Q Consensus 370 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 398 (402)
|+.+.|..+|+++....+.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46677888888888777777777776653
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.34 E-value=13 Score=30.33 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=56.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHhHHHHHHH
Q 041936 253 MYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS--GLSPNSSVYFTMVYF 330 (402)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~ 330 (402)
|.+..+..+.+.+.+.+++...++-++... .|..+-..+++.+|-.|+|++|..-++..-.. ...+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445667778888999999999888777632 25666777899999999999999888776654 223345667666654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.22 E-value=10 Score=30.97 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK--GWVPNFTTMKSLVTG 365 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 365 (402)
|.+..+..+.+.+...+++.....-++... -|...-..++..+|-.|++++|..-++-.-+. ...+-..+|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345566777888999999998888777632 25667778889999999999998877665543 234556677777664
Q ss_pred H
Q 041936 366 L 366 (402)
Q Consensus 366 ~ 366 (402)
-
T Consensus 82 e 82 (273)
T COG4455 82 E 82 (273)
T ss_pred H
Confidence 3
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.81 E-value=56 Score=32.24 Aligned_cols=106 Identities=9% Similarity=0.072 Sum_probs=59.4
Q ss_pred HHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC
Q 041936 45 ALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN 124 (402)
Q Consensus 45 ~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 124 (402)
-++-+-..+.+++|++..+......+...-.......|..+...|++++|-...-.|.. .+..-|...+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccc
Confidence 44555566777888877665543332222345677778888888888888877777762 22334444454555555
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH
Q 041936 125 MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI 157 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (402)
+...... -+....-..+...|..++..+..
T Consensus 438 ~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 4433222 22222112345567766666655
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.64 E-value=15 Score=29.55 Aligned_cols=87 Identities=11% Similarity=0.039 Sum_probs=54.4
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHHh
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSV-----GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFCE 193 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 193 (402)
+...|++++|..-|...++.- ++.. ..|..-..++.+.+.++.|+.-..+.++- .|+ .....--..+|.+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHHHh
Confidence 556788888888888777653 3222 23444445677778888877766665432 332 1222223456777
Q ss_pred cCChhHHHHHHHHHHhC
Q 041936 194 SSDSSSAYSILAEMDRK 210 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~ 210 (402)
...+++|+.=|+++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 78888888888888775
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.49 E-value=2.8 Score=21.89 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=7.5
Q ss_pred HHHHcCCHHHHHHHHHHc
Q 041936 154 ALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~ 171 (402)
++.+.|++++|.+.|+++
T Consensus 9 ~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 333344444444444444
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=81.00 E-value=39 Score=29.90 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=49.6
Q ss_pred chHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHH
Q 041936 92 NGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI---AKDYKEVKRVF 168 (402)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 168 (402)
+.-+.++++..+. .+.+..+....+..+.+..+.++..+-++++.... +-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 4455666666644 55667777777777777777787788888877664 4466677766655443 22355555555
Q ss_pred HHc
Q 041936 169 IEF 171 (402)
Q Consensus 169 ~~~ 171 (402)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 444
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.94 E-value=47 Score=30.77 Aligned_cols=120 Identities=8% Similarity=0.018 Sum_probs=70.1
Q ss_pred hcCCHHHHHH-HHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHH
Q 041936 122 QANMTEHAVR-TFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSA 200 (402)
Q Consensus 122 ~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a 200 (402)
..|+.-.|-+ ++..+... +.++.............|+++.+...+....+ -+-....+...+++...+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 4455554433 44444332 22222233333445667888888777766632 2234556677778888888888888
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 041936 201 YSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYG 246 (402)
Q Consensus 201 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (402)
...-..|....+. +.+.........-..|-++++...|+++...+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8887777776554 44444433333445566777777777776554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.57 E-value=5.7 Score=20.94 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhH
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~ 137 (402)
+..+...|...|++++|...|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444555555555555555544
|
... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.33 E-value=2.6 Score=20.99 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=11.0
Q ss_pred HHHHHHHcCCChHHHHHHHH
Q 041936 361 SLVTGLAGASKVSEAKELIG 380 (402)
Q Consensus 361 ~l~~~~~~~g~~~~a~~~~~ 380 (402)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34555555666666655543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.29 E-value=35 Score=29.27 Aligned_cols=75 Identities=15% Similarity=0.012 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHH
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKS-IKPNASSFGALVAG 225 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~ 225 (402)
+.+-.+|.+.++++.|.++.+.+..-. +.|..-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 344455566666666666666554321 2233334444445556666666666555554431 23334444433333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 1e-14
Identities = 58/417 (13%), Positives = 126/417 (30%), Gaps = 119/417 (28%)
Query: 2 GFI-SRLRT-------NLNLFSQKHHRYLATSSILSSGDKTPLTSKDKTRAALTLLKSES 53
F+ S ++T ++ ++ R + + + + + L K R AL L+
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 54 NPE--------K---ILEICRAAAL-----------------TPES---HLDRLAFSIAI 82
N K L++C + + +PE+ L +L + I
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 83 NKLSEANYFNGISQYLEELKTRP-DLQNERFHAHS-IIL--------------------- 119
N S +++ + I + ++ L + + + ++L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 120 --------YGQANMT-----EHAVRTFKE------------MDEHKLRHSVGAFNALLLA 154
+ A T +H T L V N L+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 155 LTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE---SSDSSSAYSILAEMDRKS 211
+ IA E R + + + D +I++ ++ + L+ + S
Sbjct: 332 I-IA----ESIRDGLATWDNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPS 384
Query: 212 IK-PNASSFGALVAGFYKEEKYEDVNKVLQMMERYGM-KSGVSMYNVRIHSL-CKLR-KC 267
P L++ + + DV V+ + +Y + + + I S+ +L+ K
Sbjct: 385 AHIPT-----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 268 AEAKALLDEMLS-----KGMKPNSVT--------YSHFIYGFCKDGNFEEAKKFYRI 311
AL ++ K + + YSH + + E F +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 3e-07
Identities = 49/392 (12%), Positives = 109/392 (27%), Gaps = 121/392 (30%)
Query: 72 HLDRLAFSIAINKLSEANYFNG--ISQYLEELKTRPDLQN-ERFHAHSIILYGQANMTEH 128
H+D + E Y +S + + D ++ +
Sbjct: 6 HMD--------FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM--------------PK 43
Query: 129 AVRTFKEMDE-HKLRHSVGAFNALLLALTIAKDYKE--VKRVFIEFPKTYGIKPDLDTYN 185
++ + +E+D + +V + L +E V++ F+E ++ + Y
Sbjct: 44 SILSKEEIDHIIMSKDAV---SGTLRLFWTLLSKQEEMVQK-FVE----EVLRIN---YK 92
Query: 186 RVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGAL-VAGFYKEEKYEDVNKVLQMMER 244
++ S + + R + + F V + + Y + + L +
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV---SRLQPYLKLRQALLELRP 149
Query: 245 ------YGMK-SG--------------VSMYNVRIHSLCKLRKCAEAKALLDEM--LSKG 281
G+ SG + +I L L+ C + +L+ + L
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQKLLYQ 208
Query: 282 MKPNSVTYSHFIYGFCKDGNFEEAK-KFYRIMSNSGLSPNS-----SVYFTMVYFMCKGG 335
+ PN + S + + R++ + N +V
Sbjct: 209 IDPNWTSRSDHSSNI--KLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQ----------- 254
Query: 336 DYETALGF---CK-------ESIAKGWVPNFTTMKSLVTGLAGASKVSEAKEL------- 378
+ + F CK + + TT SL + E K L
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDC 313
Query: 379 ----------------IGLVKEKFTKNVDTWN 394
+ ++ E + TW+
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 5e-05
Identities = 49/283 (17%), Positives = 91/283 (32%), Gaps = 78/283 (27%)
Query: 6 RLRTNLNLFSQ-KHHRYLATSSILSSGDKTPLTSKDKTRA---ALTLLKSESN-PEKILE 60
+R L + KH ++I+ S L + R L++ ++ P +L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPAE-YRKMFDRLSVFPPSAHIPTILLS 393
Query: 61 I--CRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQN------ER- 111
+ +++L + K + + + S YLE + +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 112 -------------------FHAHSIILY--GQANMTEHAVRTFKE--MD----EHKLRHS 144
F++H I + E + F+ +D E K+RH
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSH--IGHHLKNIEHPER-MTLFRMVFLDFRFLEQKIRHD 510
Query: 145 VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA---F---CESSDSS 198
A+NA L + K K Y I + Y R++ A F E +
Sbjct: 511 STAWNASGSILNTLQQLKFYKP--------Y-ICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 199 SAYSILAEMDRKSIKPNASSFGALVAGFYKEEK-YEDVNKVLQ 240
S Y+ L + AL ++E +E+ +K +Q
Sbjct: 562 SKYTDLLRI-------------AL---MAEDEAIFEEAHKQVQ 588
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.5 bits (163), Expect = 3e-12
Identities = 23/218 (10%), Positives = 57/218 (26%), Gaps = 3/218 (1%)
Query: 95 SQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA 154
+ + P+ E A + + + + +L A
Sbjct: 77 GCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKC 136
Query: 155 LTIAKDYKEVKRVFIEF--PKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSI 212
+ + + + LD YN V+ + +L + +
Sbjct: 137 CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196
Query: 213 KPNASSFGALVAGFYKEEKY-EDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAK 271
P+ S+ A + ++++ + + L+ M + G+K V + +
Sbjct: 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256
Query: 272 ALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFY 309
+ P V S + K +
Sbjct: 257 KVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.1 bits (154), Expect = 4e-11
Identities = 19/160 (11%), Positives = 44/160 (27%), Gaps = 3/160 (1%)
Query: 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYN 255
A + + P L+ + + + +
Sbjct: 72 SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL 131
Query: 256 VRIHSLCKLRKCAEAKALLD---EMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIM 312
+ A LL K Y+ + G+ + G F+E ++
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 313 SNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGW 352
++GL+P+ Y + M + + C E +++
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 402 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.83 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.72 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.71 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.71 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.71 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.69 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.69 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.68 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.68 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.68 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.68 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.68 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.67 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.64 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.63 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.63 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.61 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.6 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.6 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.59 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.58 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.56 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.55 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.53 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.53 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.52 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.52 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.51 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.51 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.5 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.44 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.43 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.4 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.39 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.35 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.32 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.32 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.28 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.26 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.25 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.19 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.19 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.18 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.17 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.15 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.15 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.13 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.12 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.11 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.1 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.09 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.09 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.09 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.07 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.07 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.05 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.05 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.04 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.03 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.03 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.03 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.02 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.98 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.97 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.96 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.95 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.93 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.9 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.89 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.88 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.86 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.85 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.83 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.81 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.77 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.75 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.74 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.73 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.72 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.72 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.71 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.71 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.71 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.7 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.7 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.7 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.68 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.68 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.68 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.67 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.66 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.66 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.65 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.64 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.64 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.64 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.61 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.59 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.58 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.56 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.56 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.56 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.55 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.55 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.54 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.52 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.5 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.5 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.5 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.49 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.49 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.49 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.48 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.46 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.46 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.44 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.44 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.44 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.43 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.4 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.36 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.35 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.33 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.32 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.26 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.25 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.2 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.2 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.17 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.16 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.13 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.13 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.11 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.09 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.08 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.08 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.08 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.07 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.05 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.97 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.97 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.96 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.96 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.95 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.94 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.92 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.89 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.82 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.78 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.77 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.72 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.69 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.67 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.6 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.52 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.41 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.2 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.06 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.03 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.0 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.92 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.91 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.89 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.88 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.86 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.83 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.81 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.79 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.78 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.73 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.72 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.72 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.57 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.57 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.52 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.13 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.04 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.01 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.68 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.54 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 95.52 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.35 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.22 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 94.52 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.41 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.27 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.0 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.94 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.84 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.59 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.48 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.46 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.35 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.97 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.54 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.82 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 90.67 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.64 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.14 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 89.98 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.18 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.92 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.82 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.72 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.52 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.23 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.08 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.83 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 83.19 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 82.02 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 80.43 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 80.37 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.15 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=259.11 Aligned_cols=204 Identities=13% Similarity=0.169 Sum_probs=110.3
Q ss_pred HHHHHHHhHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC---------hh
Q 041936 129 AVRTFKEMDEHKLRHSV-GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD---------SS 198 (402)
Q Consensus 129 A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---------~~ 198 (402)
+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|.++|++|. ..|++||..||++||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34444555555444433 245556666666666666666666663 34666666666666666665443 34
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 199 SAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 199 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 279 SKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 279 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555555555555555555543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=254.48 Aligned_cols=354 Identities=7% Similarity=-0.050 Sum_probs=260.5
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHhhcCC--------------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCC
Q 041936 41 KTRAALTLLKSESNPEKILEICRAAALTP--------------ESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPD 106 (402)
Q Consensus 41 ~~~~~l~~l~~~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 106 (402)
........+...|++++|+++|+...... +...+..+|..++.++.+.|++++|.++|+++.....
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 44556667777788888888887432211 2234578888899999999999999888888763211
Q ss_pred ----------------------------------------------------------------------CCchHHHHHH
Q 041936 107 ----------------------------------------------------------------------LQNERFHAHS 116 (402)
Q Consensus 107 ----------------------------------------------------------------------~~~~~~~~~l 116 (402)
+++...+..+
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 311 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHH
Confidence 1344455555
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
+..|.+.|++++|+++|+++.+.+ +.+..+++.++.++.+.|++++|..+++++.+. .+.+..+|+.++.+|.+.|+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhcc
Confidence 666666666666666666666544 345555666666666666666666666666432 24467778888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 041936 197 SSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (402)
+++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|++
T Consensus 389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888887653 3356788888888888888888888888887765 45777888888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 277 MLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSPN--SSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 277 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
+.+... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.
T Consensus 467 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 877532 36778888888888888888888888888765 55676 678888888888888888888888888776
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcCC
Q 041936 351 GWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLP 401 (402)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 401 (402)
+ +.+..+|..+..+|.+.|++++|.+.|+++.+..|.+...|..+...|.
T Consensus 546 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 546 S-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 5 5577888888888888888888888888888887888888887777764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=258.15 Aligned_cols=208 Identities=13% Similarity=0.169 Sum_probs=182.1
Q ss_pred chHHHHHHHhhcCCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC---------H
Q 041936 92 NGISQYLEELKTRPDLQN-ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKD---------Y 161 (402)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 161 (402)
..+..+.+.+...+.... ...+..+|.+|++.|++++|+++|++|.+.|++||..+||.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 345555566665554443 456888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQM 241 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (402)
++|.++|++| ...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M-~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQM-IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 8899999999 556999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 242 MERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
|.+.|+.||..+|+++|.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999988643
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=249.02 Aligned_cols=356 Identities=8% Similarity=-0.062 Sum_probs=257.2
Q ss_pred CCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHH
Q 041936 37 TSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHS 116 (402)
Q Consensus 37 ~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 116 (402)
.....+...++.+...|+++.|+++|+.+.. ..|+..++..++..+.+.|++++|..+++.+.. .+.+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHH
Confidence 4455567888888889999999999988862 345667888888888888888888888888753 24556677777
Q ss_pred HHHHHhcCCHHHHHHHHHHhHh-C--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcC-----
Q 041936 117 IILYGQANMTEHAVRTFKEMDE-H--------------KLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYG----- 176 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~-~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 176 (402)
+.+|.+.|++++|+++|+++.. . +.+.+..+|+.++.+|.+.|++++|.++|+++.+...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 7777777777777777774322 1 2234577777777777777777777777776643210
Q ss_pred ----------------------------------------------------------------CCCCHHHHHHHHHHHH
Q 041936 177 ----------------------------------------------------------------IKPDLDTYNRVIKAFC 192 (402)
Q Consensus 177 ----------------------------------------------------------------~~p~~~~~~~li~~~~ 192 (402)
.+++..+|+.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 1267778888888888
Q ss_pred hcCChhHHHHHHHHHHhCCC---------------------------------CCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041936 193 ESSDSSSAYSILAEMDRKSI---------------------------------KPNASSFGALVAGFYKEEKYEDVNKVL 239 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~ 239 (402)
+.|++++|.++|+++.+.+. +.+..+++.++.+|.+.|++++|.++|
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 88888888888888775431 224556666667777777777777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041936 240 QMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 319 (402)
+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.+... .
T Consensus 397 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 473 (597)
T 2xpi_A 397 SKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-Y 473 (597)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-C
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 7776643 34566777777777777777777777777776532 3667777777777777777778777777776532 2
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhH
Q 041936 320 NSSVYFTMVYFMCKGGDYETALGFCKESIAK----GWVPN--FTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTW 393 (402)
Q Consensus 320 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 393 (402)
+..+|..++..|.+.|++++|.++++++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+..|.+..+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 5677888888888888888888888877665 55666 67788888888888888888888888877777777777
Q ss_pred HHHHhcC
Q 041936 394 NEIEAGL 400 (402)
Q Consensus 394 ~~l~~~~ 400 (402)
..+..+|
T Consensus 554 ~~l~~~~ 560 (597)
T 2xpi_A 554 TAIALVY 560 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776655
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-26 Score=208.16 Aligned_cols=345 Identities=10% Similarity=-0.027 Sum_probs=294.9
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 041936 44 AALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQA 123 (402)
Q Consensus 44 ~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 123 (402)
..-.++...++++.|..+++...... +.+...|..+...+.+.|++++|.+.|+++... .+.+...+..+..++.+.
T Consensus 38 ~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 114 (388)
T 1w3b_A 38 LLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL-KPDFIDGYINLAAALVAA 114 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CcchHHHHHHHHHHHHHc
Confidence 34455667889999999988776442 346788999999999999999999999998843 455667788899999999
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 041936 124 NMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSI 203 (402)
Q Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 203 (402)
|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...
T Consensus 115 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp SCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998875 5566778888899999999999999999987652 44578899999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 041936 204 LAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMK 283 (402)
Q Consensus 204 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (402)
|+++.+.+ +.+...+..+...+...|++++|...+++..... +.+..++..+..++.+.|++++|...|+++.+.+..
T Consensus 192 ~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 192 FEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99998864 3457788999999999999999999999988765 456788999999999999999999999999987432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041936 284 PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLV 363 (402)
Q Consensus 284 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (402)
+..+|..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 270 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 346 (388)
T 1w3b_A 270 -FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLA 346 (388)
T ss_dssp -CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 56789999999999999999999999999863 3468889999999999999999999999998864 56788999999
Q ss_pred HHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhc
Q 041936 364 TGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAG 399 (402)
Q Consensus 364 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 399 (402)
.++.+.|++++|.+.|+++.+..|.+...|..+-..
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHH
Confidence 999999999999999999999888888888776544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-26 Score=209.51 Aligned_cols=342 Identities=11% Similarity=0.017 Sum_probs=296.7
Q ss_pred HHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHH
Q 041936 48 LLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTE 127 (402)
Q Consensus 48 ~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 127 (402)
.+-..|++++|.+.++.+....+ .+...+..+...+...|++++|...++.... ..+.+...+..+...+.+.|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~-~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-QNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHCCCHH
Confidence 34457899999999988754422 2456777888888999999999999998884 35677888999999999999999
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 128 HAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 128 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
+|+..|+++.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999998875 6677889999999999999999999999997652 334566788889999999999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 041936 208 DRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSV 287 (402)
Q Consensus 208 ~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 287 (402)
.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++....... +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 8863 4467899999999999999999999999999876 456788999999999999999999999999876322 578
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
++..+..++...|++++|...|+++.+.+. .+..+|..+...+.+.|++++|...++++.+.. +.+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 899999999999999999999999998642 247789999999999999999999999999875 678899999999999
Q ss_pred cCCChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 368 GASKVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 368 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
+.|++++|.+.++++.+..|.+..+|..+..+|
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 999999999999999998888888888887665
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-24 Score=197.13 Aligned_cols=314 Identities=13% Similarity=0.081 Sum_probs=264.9
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 041936 73 LDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALL 152 (402)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 152 (402)
.+...+..+...+.+.|++++|..+|+.+... .+.+...+..+..++...|++++|+..|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 35678888999999999999999999998843 45567888889999999999999999999998876 66788999999
Q ss_pred HHHHHcCCHHHHHHHHHHchhhcCCCCCH----HHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 041936 153 LALTIAKDYKEVKRVFIEFPKTYGIKPDL----DTYNRV------------IKAFCESSDSSSAYSILAEMDRKSIKPNA 216 (402)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 216 (402)
.+|...|++++|...|+++.+. .|+. ..+..+ ...+...|++++|...|+++.+.. +.+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 9999999999999999998643 4443 455555 444888999999999999998764 4578
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH----
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHF---- 292 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l---- 292 (402)
.++..+..+|.+.|++++|.+.|+++.+.. +.+..++..+..+|...|++++|...|+++...... +...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence 889999999999999999999999998765 567888999999999999999999999999876322 34444444
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH
Q 041936 293 --------IYGFCKDGNFEEAKKFYRIMSNSGLSPN-----SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTM 359 (402)
Q Consensus 293 --------~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 359 (402)
...|...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++++.+.. +.+...|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 78899999999999999999885 344 4478888999999999999999999998764 5578999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHH
Q 041936 360 KSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 360 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 397 (402)
..+..+|...|++++|.+.++++.+..|.+...|..+-
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 99999999999999999999999998788887777665
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-23 Score=188.13 Aligned_cols=329 Identities=12% Similarity=0.025 Sum_probs=269.9
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 041936 44 AALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQA 123 (402)
Q Consensus 44 ~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 123 (402)
.....+...|+++.|++.|+.+.... +.+...+..+...+...|++++|...++.+... .+.+...+..+..+|.+.
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 107 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-KMDFTAARLQRGHLLLKQ 107 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHc
Confidence 44556678899999999999886532 236789999999999999999999999999843 355678888999999999
Q ss_pred CCHHHHHHHHHHhHhCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 041936 124 NMTEHAVRTFKEMDEHKLRHSV---GAFNAL------------LLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI 188 (402)
Q Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 188 (402)
|++++|...|+++.+.+ +.+. ..+..+ ...+...|++++|...|+++.+.. +.+...+..+.
T Consensus 108 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 184 (450)
T 2y4t_A 108 GKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRA 184 (450)
T ss_dssp TCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 99999999999999865 4444 566555 444899999999999999997653 55778899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH-----------
Q 041936 189 KAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVR----------- 257 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------- 257 (402)
.+|.+.|++++|.++|+++.+.. +.+..++..+..+|...|++++|...|+++.+.. +.+...+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998763 4578899999999999999999999999998764 3344455444
Q ss_pred -HHHHHccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 258 -IHSLCKLRKCAEAKALLDEMLSKGMKPN-----SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 258 -l~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
...+.+.|++++|...|+++.+. .|+ ...|..+..++.+.|++++|...++++.+.. +.+...|..+..+|
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 78899999999999999999985 344 3478889999999999999999999998753 23678999999999
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH------------HHHcCC-----ChHHHHHHHHHHHh
Q 041936 332 CKGGDYETALGFCKESIAKGWVPNFTTMKSLVT------------GLAGAS-----KVSEAKELIGLVKE 384 (402)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~a~~~~~~~~~ 384 (402)
...|++++|...++++.+.. +-+...+..+.. .|...| +.+++.+.+++...
T Consensus 340 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l 408 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLAL 408 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999864 445666666653 344445 66778888887433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-21 Score=174.21 Aligned_cols=316 Identities=13% Similarity=0.061 Sum_probs=259.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+...+..+...+...|++++|...++.+... .+.+...+..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 3467788888899999999999999998843 45567788888899999999999999999988765 567788999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCC----CHHHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCHh
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKP----DLDTYNRV------------IKAFCESSDSSSAYSILAEMDRKSIKPNAS 217 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 217 (402)
++...|++++|...|+++.+. .| +...+..+ ...+...|++++|.+.++++.+.. +.+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 155 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAE 155 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchH
Confidence 999999999999999988643 44 34444444 578889999999999999998764 45778
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH-------
Q 041936 218 SFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYS------- 290 (402)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~------- 290 (402)
.+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.... +...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHH
Confidence 89999999999999999999999998865 567888999999999999999999999999876322 333332
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 041936 291 -----HFIYGFCKDGNFEEAKKFYRIMSNSGLSPNS----SVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKS 361 (402)
Q Consensus 291 -----~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (402)
.+...+...|++++|...++++.+.... +. ..+..+...+...|++++|...++++.+.. +.+..++..
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 311 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 2366788999999999999999885322 22 235567788999999999999999998864 557889999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhc
Q 041936 362 LVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAG 399 (402)
Q Consensus 362 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 399 (402)
+...+.+.|++++|.+.|+++.+..|.+...+..+..+
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 99999999999999999999999888888887776654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-22 Score=187.79 Aligned_cols=241 Identities=10% Similarity=0.060 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 041936 147 AFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGF 226 (402)
Q Consensus 147 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 226 (402)
++..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 3444444455555555555555555433 2224445555555555555555555555555442 22444555555555
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041936 227 YKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAK 306 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 306 (402)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHH
Confidence 56666666666666555543 23445555555666666666666666666555421 13445555666666666666666
Q ss_pred HHHHHHHhCCCC-CC----HHhHHHHHHHHHc---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 041936 307 KFYRIMSNSGLS-PN----SSVYFTMVYFMCK---GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKEL 378 (402)
Q Consensus 307 ~~~~~m~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 378 (402)
..++++.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 666665543111 11 2255566666666 666666666666665543 33455566666666666666666666
Q ss_pred HHHHHhcCCCChhhHH
Q 041936 379 IGLVKEKFTKNVDTWN 394 (402)
Q Consensus 379 ~~~~~~~~~~~~~~~~ 394 (402)
|+++.+..|.+...+.
T Consensus 472 ~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 472 FEESADLARTMEEKLQ 487 (514)
T ss_dssp HHHHHHHCSSHHHHHH
T ss_pred HHHHHHhccccHHHHH
Confidence 6666665554444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-21 Score=169.10 Aligned_cols=282 Identities=9% Similarity=-0.026 Sum_probs=140.9
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALT 156 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (402)
.+......+...|++++|.++++.+... .+.+...+..++..+...|++++|..+++++.+.. +.+...|..+...+.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEK-DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 4444555555555555555555555422 22333334444445555555555555555555443 334455555555555
Q ss_pred HcC-CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 041936 157 IAK-DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDV 235 (402)
Q Consensus 157 ~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 235 (402)
..| ++++|...|++..+.. +.+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 555 5555555555554321 2234445555555555555555555555555442 22334444455555555555555
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041936 236 NKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG--------MKPNSVTYSHFIYGFCKDGNFEEAKK 307 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~~~a~~ 307 (402)
.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. ...+..++..+..++...|++++|..
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 55555555443 3344455555555555555555555555554321 01123445555555555555555555
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041936 308 FYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGL 366 (402)
Q Consensus 308 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (402)
.+++..+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++
T Consensus 258 ~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 258 YHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 5555554321 134445555555555555555555555554432 33444444444444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=177.04 Aligned_cols=345 Identities=9% Similarity=-0.005 Sum_probs=285.6
Q ss_pred HHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC
Q 041936 46 LTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANM 125 (402)
Q Consensus 46 l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 125 (402)
-..+...|+++.|++.|+.+.... |+...|..+..++.+.|++++|.+.++.+... .+.+...+..+..++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL-KPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHhh
Confidence 345566899999999999997653 57899999999999999999999999999843 45677888899999999999
Q ss_pred HHHHHHHHHHhHhCCCCCC-------------------------------------------------------------
Q 041936 126 TEHAVRTFKEMDEHKLRHS------------------------------------------------------------- 144 (402)
Q Consensus 126 ~~~A~~~~~~~~~~~~~~~------------------------------------------------------------- 144 (402)
+++|...|+++.+.+ +++
T Consensus 89 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 89 FADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp HHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 999999999998765 211
Q ss_pred ------------------HHHHHHHHHHHHH---cCCHHHHHHHHHHchh-----hcCC-------CCCHHHHHHHHHHH
Q 041936 145 ------------------VGAFNALLLALTI---AKDYKEVKRVFIEFPK-----TYGI-------KPDLDTYNRVIKAF 191 (402)
Q Consensus 145 ------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~p~~~~~~~li~~~ 191 (402)
...+......+.. .|++++|..+|+++.+ .... +.+..++..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 3333333333443 8999999999999865 2111 22456788899999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH
Q 041936 192 CESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAK 271 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 271 (402)
...|++++|...++++.+.. |+..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999998875 338889999999999999999999999998865 556788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 272 ALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 272 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
..++++.+.... +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+..
T Consensus 325 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 325 KDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 999999987433 567888999999999999999999999987632 256788899999999999999999999987752
Q ss_pred C-CCC----HHHHHHHHHHHHc---CCChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 352 W-VPN----FTTMKSLVTGLAG---ASKVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 352 ~-~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
. .++ ...+..+...+.. .|++++|.+.++++.+..+.+...|..+...|
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK 459 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 1 111 3488899999999 99999999999999998888888887766554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-20 Score=173.23 Aligned_cols=336 Identities=10% Similarity=0.042 Sum_probs=233.3
Q ss_pred HHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC
Q 041936 45 ALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN 124 (402)
Q Consensus 45 ~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 124 (402)
.-..+...|+++.|++.|+.+....+ .+...+..+..++.+.|++++|.+.++.+... .+.+...+..+..++...|
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEI-KPDHSKALLRRASANESLG 107 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHcC
Confidence 34455667899999999988765432 35678888889999999999999999888743 4556777888888888888
Q ss_pred CHHHHHHHHHHhH-------------------------------------------------------------------
Q 041936 125 MTEHAVRTFKEMD------------------------------------------------------------------- 137 (402)
Q Consensus 125 ~~~~A~~~~~~~~------------------------------------------------------------------- 137 (402)
++++|+..|+.+.
T Consensus 108 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (537)
T 3fp2_A 108 NFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSS 187 (537)
T ss_dssp CHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCC
T ss_pred CHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcc
Confidence 8888888774331
Q ss_pred ------------------------------------------hCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHH
Q 041936 138 ------------------------------------------EHKLRHS-------VGAFNALLLALTIAKDYKEVKRVF 168 (402)
Q Consensus 138 ------------------------------------------~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~ 168 (402)
+.. +.+ ..++..+...+...|++++|...|
T Consensus 188 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 111 111 123444555666777777777777
Q ss_pred HHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 041936 169 IEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMK 248 (402)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (402)
++..+. .|+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +
T Consensus 267 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 341 (537)
T 3fp2_A 267 QESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-P 341 (537)
T ss_dssp HHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-C
Confidence 777654 4556677777777777788888888887777653 3356677777777777888888888887777654 3
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHh
Q 041936 249 SGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL-----SPNSSV 323 (402)
Q Consensus 249 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~ 323 (402)
.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+... ......
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 420 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 4456677777777788888888888887776532 2456777777777888888888888877765321 111122
Q ss_pred HHHHHHHHHcc----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChh
Q 041936 324 YFTMVYFMCKG----------GDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVD 391 (402)
Q Consensus 324 ~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 391 (402)
+......+... |++++|...++++.+.. +.+...+..+..+|.+.|++++|.+.|+++.+..+.+..
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 33444556666 78888888888877754 456777888888888888888888888888776554443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-19 Score=160.27 Aligned_cols=312 Identities=11% Similarity=0.029 Sum_probs=254.5
Q ss_pred HHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC
Q 041936 45 ALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN 124 (402)
Q Consensus 45 ~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 124 (402)
.-..+...|+++.|++.|+.+....+ .+...+..+...+...|++++|...++.+... .+.+...+..+...+...|
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-KMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHcC
Confidence 34456678999999999998865432 35678999999999999999999999998843 3556688889999999999
Q ss_pred CHHHHHHHHHHhHhCCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 125 MTEHAVRTFKEMDEHKLR---HSVGAFNAL------------LLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
++++|...|+++.+.. + .+...+..+ ...+...|++++|...++++.+.. +.+...+..+..
T Consensus 86 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~ 162 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELRELRAE 162 (359)
T ss_dssp CHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 9999999999998864 3 355555555 578899999999999999997653 456788999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHH------------HH
Q 041936 190 AFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYN------------VR 257 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l 257 (402)
.+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+. .+
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874 5578899999999999999999999999998865 33333333 23
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 258 IHSLCKLRKCAEAKALLDEMLSKGMKPNS----VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|...+++..+.. +.+..++..+...+..
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 66788999999999999999886432 22 235567889999999999999999999863 2367889999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 334 GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
.|++++|...++++.+.. +.+...+..+..+..
T Consensus 319 ~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 999999999999999874 445666666655543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-20 Score=162.90 Aligned_cols=287 Identities=9% Similarity=-0.031 Sum_probs=213.4
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHH
Q 041936 107 LQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNR 186 (402)
Q Consensus 107 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 186 (402)
+.+...+......+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...|..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 95 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFA 95 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHH
Confidence 3445566677777778888888888888877665 5555666677777888888888888888876542 345667777
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 041936 187 VIKAFCESS-DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLR 265 (402)
Q Consensus 187 li~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 265 (402)
+...+...| ++++|.+.|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 888888888 8888888888887764 3356677788888888888888888888887765 344566777778888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHhHHHHHHHHHccCCh
Q 041936 266 KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG--------LSPNSSVYFTMVYFMCKGGDY 337 (402)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~l~~~~~~~g~~ 337 (402)
++++|...+++..+... .+...+..+...+...|++++|...+++..+.. ...+..++..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 88888888888877632 256777788888888888888888888777531 122356777888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 338 ETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
++|...++++.+.. +.+...+..+..++.+.|++++|.+.++++.+..|.+...|..+..+|
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 88888888887764 446677788888888888888888888888777777777777666544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-19 Score=167.25 Aligned_cols=318 Identities=15% Similarity=0.049 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 041936 75 RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA 154 (402)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (402)
...+..+...+.+.|++++|.+.|+++... .+.+...+..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 356788889999999999999999999843 45677889999999999999999999999999876 6788999999999
Q ss_pred HHHcCCHHHHHHHHHHchhhc-----------------------------------------------------------
Q 041936 155 LTIAKDYKEVKRVFIEFPKTY----------------------------------------------------------- 175 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~----------------------------------------------------------- 175 (402)
+...|++++|...|+.+....
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 999999999998875331100
Q ss_pred -----------------------------------------------CCCCC--------HHHHHHHHHHHHhcCChhHH
Q 041936 176 -----------------------------------------------GIKPD--------LDTYNRVIKAFCESSDSSSA 200 (402)
Q Consensus 176 -----------------------------------------------~~~p~--------~~~~~~li~~~~~~~~~~~a 200 (402)
...|+ ..++..+...+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 00111 11233444455556666666
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 201 YSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 201 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
.+.++++.+. .|+..++..+...+...|++++|.+.++++.+.. +.+..+|..+...+...|++++|...++++.+.
T Consensus 263 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 263 QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 6666666654 3345566666666666666666666666666544 344556666666666666666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC-----CCCC
Q 041936 281 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG-----WVPN 355 (402)
Q Consensus 281 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~ 355 (402)
... +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. ....
T Consensus 340 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 340 NPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp CTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 322 345566666666666667766666666665421 234556666666666677777766666665431 1111
Q ss_pred HHHHHHHHHHHHcC----------CChHHHHHHHHHHHhcCCCChhhHHHHHhc
Q 041936 356 FTTMKSLVTGLAGA----------SKVSEAKELIGLVKEKFTKNVDTWNEIEAG 399 (402)
Q Consensus 356 ~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 399 (402)
...+......+.+. |++++|...|+++.+..|.+...|..+...
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 12233334445555 666777777776666666666666555443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-20 Score=163.85 Aligned_cols=293 Identities=10% Similarity=-0.014 Sum_probs=230.0
Q ss_pred HhcCCcchHHH-HHHHhhcCCC-C--CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041936 86 SEANYFNGISQ-YLEELKTRPD-L--QNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY 161 (402)
Q Consensus 86 ~~~~~~~~a~~-~~~~~~~~~~-~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (402)
...|++++|.+ .+++...... . .+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578899988 8876652211 1 124556778888999999999999999999876 67888999999999999999
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH---------------HHHHH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGA---------------LVAGF 226 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---------------l~~~~ 226 (402)
++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+.. .+..+
T Consensus 115 ~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 115 LLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999987653 457788999999999999999999999999886422 2222221 23334
Q ss_pred hccCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041936 227 YKEEKYEDVNKVLQMMERYGMKS-GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEA 305 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 305 (402)
...|++++|...++++.+..... +..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998865211 57889999999999999999999999998863 23578899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHcCCChHHH
Q 041936 306 KKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWV----------PNFTTMKSLVTGLAGASKVSEA 375 (402)
Q Consensus 306 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~a 375 (402)
...++++.+.. +.+...+..+...|...|++++|...++++.+.... ....+|..+..+|...|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998853 235788999999999999999999999998875211 1268899999999999999999
Q ss_pred HHHHHHHHh
Q 041936 376 KELIGLVKE 384 (402)
Q Consensus 376 ~~~~~~~~~ 384 (402)
..++++..+
T Consensus 350 ~~~~~~~l~ 358 (368)
T 1fch_A 350 GAADARDLS 358 (368)
T ss_dssp HHHHTTCHH
T ss_pred HHhHHHHHH
Confidence 998875443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-19 Score=161.30 Aligned_cols=291 Identities=10% Similarity=-0.010 Sum_probs=230.3
Q ss_pred cCCChhHHHH-HHHHhhcCCCCCC--CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHH
Q 041936 51 SESNPEKILE-ICRAAALTPESHL--DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTE 127 (402)
Q Consensus 51 ~~~~~~~al~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 127 (402)
..++++.|++ .++......+..| +...+..+...+.+.|++++|...++.+... .+.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ-DPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHH
Confidence 3467778887 7775543322222 3456788899999999999999999999854 4567788889999999999999
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHH---------------HHHHHH
Q 041936 128 HAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNR---------------VIKAFC 192 (402)
Q Consensus 128 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~---------------li~~~~ 192 (402)
+|+..|+++.+.+ +.+..++..+..++...|++++|...++++.+.. +.+...+.. .+..+.
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 9999999998876 6788999999999999999999999999987542 222222221 233344
Q ss_pred hcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH
Q 041936 193 ESSDSSSAYSILAEMDRKSIKP-NASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAK 271 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 271 (402)
..|++++|...++++.+..... +..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999998864221 57889999999999999999999999998865 456788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----------CHHhHHHHHHHHHccCChHHHH
Q 041936 272 ALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP----------NSSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 272 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~ 341 (402)
..|+++.+.. +.+...+..+..+|...|++++|...|+++.+..... ...+|..+..+|...|+.++|.
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999998863 2367889999999999999999999999988642111 2678999999999999999999
Q ss_pred HHHHHH
Q 041936 342 GFCKES 347 (402)
Q Consensus 342 ~~~~~~ 347 (402)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 987643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=162.79 Aligned_cols=267 Identities=7% Similarity=-0.071 Sum_probs=217.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI 188 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 188 (402)
+...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 34457778888999999999999999998876 6788999999999999999999999999997653 44678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCH----------hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CChhhHHHH
Q 041936 189 KAFCESSDSSSAYSILAEMDRKSIKPNA----------SSFGALVAGFYKEEKYEDVNKVLQMMERYGMK-SGVSMYNVR 257 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 257 (402)
..|...|++++|.+.|+++.+.. +.+. ..+..+...+...|++++|.+.++++.+.... .+..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999998753 1112 22334578899999999999999999887521 168889999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 041936 258 IHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDY 337 (402)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 337 (402)
...|...|++++|...|+++.+... .+..+|..+..+|...|++++|...|+++.+... .+..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999988632 3678999999999999999999999999988632 2478899999999999999
Q ss_pred HHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 041936 338 ETALGFCKESIAKGW-----------VPNFTTMKSLVTGLAGASKVSEAKELIGL 381 (402)
Q Consensus 338 ~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 381 (402)
++|...++++.+... ..+..+|..+..++...|+.+.+..+.+.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999876420 11367889999999999999998887765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-18 Score=151.50 Aligned_cols=267 Identities=9% Similarity=-0.045 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
..+......+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHH
Confidence 345566667778888888888888877665 5567777778888888888888888888776542 4456677778888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH--------------HH-HHhccCCHHHHHHHHHHHHHCCCCCChhhHH
Q 041936 191 FCESSDSSSAYSILAEMDRKSIKPNASSFGAL--------------VA-GFYKEEKYEDVNKVLQMMERYGMKSGVSMYN 255 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (402)
+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 888888888888888877653 2233333333 33 3778899999999999998865 45778899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 041936 256 VRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGG 335 (402)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 335 (402)
.+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++.+... .+...+..+...|...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhc
Confidence 999999999999999999999987632 3577899999999999999999999999887632 35778899999999999
Q ss_pred ChHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 336 DYETALGFCKESIAKGWVP-----------NFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
++++|...++++.+..... +...+..+..++.+.|++++|..++++..+
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999988763111 477889999999999999999999876544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-19 Score=157.95 Aligned_cols=266 Identities=11% Similarity=0.007 Sum_probs=218.7
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+...+..+...+.+.|++++|.++++.+... .+.+...+..+..+|...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ-DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3455888899999999999999999999843 45678889999999999999999999999998876 667899999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHhhHHH
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPD-----------LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIK-PNASSFGA 221 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~ 221 (402)
+|...|++++|...|+++.+. .|+ ...+..+...+...|++++|.+.++++.+.... .+..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 999999999999999998654 232 223344578899999999999999999887422 16889999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 041936 222 LVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN 301 (402)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 301 (402)
+...+...|++++|.+.|+++.+.. +.+..+|..+..+|...|++++|...|+++.+... .+..++..+..+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 9999999999999999999998875 56788999999999999999999999999998632 257889999999999999
Q ss_pred HHHHHHHHHHHHhCCCC-----------CCHHhHHHHHHHHHccCChHHHHHHHHH
Q 041936 302 FEEAKKFYRIMSNSGLS-----------PNSSVYFTMVYFMCKGGDYETALGFCKE 346 (402)
Q Consensus 302 ~~~a~~~~~~m~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (402)
+++|...|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998864211 1357889999999999999988887654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-18 Score=145.65 Aligned_cols=253 Identities=9% Similarity=0.035 Sum_probs=141.0
Q ss_pred HHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 041936 83 NKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYK 162 (402)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 162 (402)
......|+++.|+...+................+.++|...|+++.|+..++.. + +|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~-~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---S-APELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S-CHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---C-ChhHHHHHHHHHHHcCCCcHH
Confidence 344456666666666655442111111223344556666666666666544331 1 455556666666666666666
Q ss_pred HHHHHHHHchhhcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041936 163 EVKRVFIEFPKTYGI-KPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQM 241 (402)
Q Consensus 163 ~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (402)
+|++.++++... +. +-+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|++
T Consensus 83 ~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 83 AIVAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666665432 22 22344455555666666666666666665 34555666666666666666666666666
Q ss_pred HHHCCCCCChhhH---HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041936 242 MERYGMKSGVSMY---NVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLS 318 (402)
Q Consensus 242 ~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 318 (402)
+.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+...
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p- 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS- 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 66543 332211 112233334466666666666666552 23555666666666666666666666666665421
Q ss_pred CCHHhHHHHHHHHHccCChHH-HHHHHHHHHhC
Q 041936 319 PNSSVYFTMVYFMCKGGDYET-ALGFCKESIAK 350 (402)
Q Consensus 319 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 350 (402)
-+..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 145556666666666666654 45566666554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-18 Score=151.53 Aligned_cols=266 Identities=8% Similarity=-0.021 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
..+......+...|++++|..+++.+... .+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA-APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34667777888889999999999888743 34566777788888999999999999999988765 66788888889999
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH--------------HH-HHHhcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV--------------IK-AFCESSDSSSAYSILAEMDRKSIKPNASSFG 220 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (402)
...|++++|...++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+..++.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 99999999999998886542 2222233332 22 3777889999999999998764 44778899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
.+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998865 45678899999999999999999999999987632 35778899999999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-----------CHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 041936 301 NFEEAKKFYRIMSNSGLSP-----------NSSVYFTMVYFMCKGGDYETALGFCKESI 348 (402)
Q Consensus 301 ~~~~a~~~~~~m~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 348 (402)
++++|...++++.+..... +...+..+..++...|++++|..++++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999988753221 46788899999999999999999887543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-17 Score=143.31 Aligned_cols=256 Identities=13% Similarity=0.114 Sum_probs=138.9
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSV--GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
.....|+++.|+..++..... .|+. .....+..+|...|+++.|...++.. -+|+..++..+...+...++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCc
Confidence 344456666666666554432 2221 23344555666666666666544321 24455556666666666666
Q ss_pred hhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 197 SSSAYSILAEMDRKSIKP-NASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
.++|++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|...|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666665554323 344445555566666666666666655 3455556666666666666666666666
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 041936 276 EMLSKGMKPNSVTY---SHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGW 352 (402)
Q Consensus 276 ~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 352 (402)
++.+.. |+.... ...+..+...|++++|..+|+++.+. ...+...++.+..++.+.|++++|...++++++..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 665542 332211 11222233345666666666666654 22345556666666666666666666666665543
Q ss_pred CCCHHHHHHHHHHHHcCCChHH-HHHHHHHHHhcCCCChh
Q 041936 353 VPNFTTMKSLVTGLAGASKVSE-AKELIGLVKEKFTKNVD 391 (402)
Q Consensus 353 ~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~ 391 (402)
+-+..++..++..+...|+.++ +.++++++.+..|.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 4455566666666666666544 34566666555444443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=173.05 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=61.5
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMMER---YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFI 293 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 293 (402)
.||+++|++|++.|++++|.++|++|.+ .|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3555555555555555555555544432 3455555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCCH-HHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041936 294 YGFCKDGNF-EEAKKFYRIMSNSGLSPNSSVYFTMVY 329 (402)
Q Consensus 294 ~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l~~ 329 (402)
.++++.|+. ++|.++|++|.+.|+.||..+|++++.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 555555542 455555555555555555555555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=154.60 Aligned_cols=290 Identities=10% Similarity=0.054 Sum_probs=136.6
Q ss_pred HHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC
Q 041936 45 ALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN 124 (402)
Q Consensus 45 ~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 124 (402)
+-.++...|+.++|.++++... ++.+|..+..++.+.|++++|++.|.+. ++...|..++..+...|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC
Confidence 4445667888999999998872 2358999999999999999999999653 45668889999999999
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 041936 125 MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSIL 204 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 204 (402)
++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y 145 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLY 145 (449)
T ss_dssp -----------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999988777664 4567889999999999999999887773 367779999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 041936 205 AEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284 (402)
Q Consensus 205 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 284 (402)
..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .
T Consensus 146 ~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~ 205 (449)
T 1b89_A 146 NNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----V 205 (449)
T ss_dssp HHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----T
T ss_pred HHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----h
Confidence 977 47999999999999999999999988 368899999999999999999966555422 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC-CCCC------CHH
Q 041936 285 NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK-GWVP------NFT 357 (402)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~ 357 (402)
.+.-...++..|.+.|.+++|..+++...... +-....|+.+..+|++- ++++..+.++....+ +++| +..
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 283 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33345578999999999999999999998764 44577888888888765 344444444433322 3333 567
Q ss_pred HHHHHHHHHHcCCChHHHHHHH
Q 041936 358 TMKSLVTGLAGASKVSEAKELI 379 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~ 379 (402)
.|.-+...|.+-++++.|....
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHHH
Confidence 7888999999999999888753
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-14 Score=133.59 Aligned_cols=308 Identities=10% Similarity=0.074 Sum_probs=167.5
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHh----c
Q 041936 52 ESNPEKILEICRAAALTPESHLDRLAFSIAINKLSE----ANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQ----A 123 (402)
Q Consensus 52 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 123 (402)
.++++.|++.|+.+.... +...+..+...+.. .+++++|.+.|++....+ +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 567777777776665431 34566666666666 677777777777766433 33444455556665 5
Q ss_pred CCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh----cC
Q 041936 124 NMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI----AKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE----SS 195 (402)
Q Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~ 195 (402)
+++++|+..|++..+.| +...+..+...|.. .++.++|.++|++..+. .+...+..+...|.. .+
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GNVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCCCc
Confidence 67777777777766543 34555556666655 56666666666666432 245555555555555 56
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCC------------------------
Q 041936 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYK----EEKYEDVNKVLQMMERYGM------------------------ 247 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~------------------------ 247 (402)
+.++|.++|++..+.| +...+..+...|.. .+++++|...|++..+.+.
T Consensus 202 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A 278 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKA 278 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHH
Confidence 6666666666655543 33444444444443 4555555555555544321
Q ss_pred ---------CCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 041936 248 ---------KSGVSMYNVRIHSLCKL-----RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG---NFEEAKKFYR 310 (402)
Q Consensus 248 ---------~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~ 310 (402)
.-+...+..+...|... +++++|...|++..+.| +...+..+...|...| +.++|.++|+
T Consensus 279 ~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~ 355 (490)
T 2xm6_A 279 LEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFR 355 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 01222333333444333 44455555554444432 2233344444444433 4455555555
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHH
Q 041936 311 IMSNSGLSPNSSVYFTMVYFMCK----GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG----ASKVSEAKELIGLV 382 (402)
Q Consensus 311 ~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 382 (402)
+..+.| +...+..+...|.. .+++++|..++++..+.+ +...+..+...|.+ .++.++|...|++.
T Consensus 356 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 356 KAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 555542 34455555555555 556666666666665544 34555555555555 56666666666666
Q ss_pred Hhc
Q 041936 383 KEK 385 (402)
Q Consensus 383 ~~~ 385 (402)
.+.
T Consensus 430 ~~~ 432 (490)
T 2xm6_A 430 STN 432 (490)
T ss_dssp HHH
T ss_pred HHC
Confidence 554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-19 Score=170.93 Aligned_cols=120 Identities=14% Similarity=0.100 Sum_probs=111.6
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 041936 249 SGVSMYNVRIHSLCKLRKCAEAKALLDEMLS---KGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYF 325 (402)
Q Consensus 249 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 325 (402)
.-..+|+++|++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457899999999999999999999988764 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 041936 326 TMVYFMCKGGDY-ETALGFCKESIAKGWVPNFTTMKSLVTGLAG 368 (402)
Q Consensus 326 ~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (402)
++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 999999999985 7899999999999999999999998865544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-14 Score=132.34 Aligned_cols=286 Identities=14% Similarity=0.053 Sum_probs=212.2
Q ss_pred CHHHHHHHHHHHHh----cCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHhHhCCCCCCH
Q 041936 74 DRLAFSIAINKLSE----ANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQ----ANMTEHAVRTFKEMDEHKLRHSV 145 (402)
Q Consensus 74 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 145 (402)
+...+..+...+.. .+++++|.+.+++....+ +...+..+...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45667777777777 899999999999988653 45567778888888 899999999999998865 56
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHh
Q 041936 146 GAFNALLLALTI----AKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE----SSDSSSAYSILAEMDRKSIKPNAS 217 (402)
Q Consensus 146 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~ 217 (402)
..+..|...|.. .+++++|..+|++..+. -+...+..+...|.. .+++++|.++|++..+.| +..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 777888888988 88999999999998553 366778888888887 789999999999999875 678
Q ss_pred hHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041936 218 SFGALVAGFYK----EEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCK----LRKCAEAKALLDEMLSKGMKPNSVTY 289 (402)
Q Consensus 218 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~ 289 (402)
.+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 88888888887 899999999999998865 45567777777765 678888888888877654 34455
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc-----CChHHHHHHHHHHHhCCCCCCHHHHH
Q 041936 290 SHFIYGFCK----DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKG-----GDYETALGFCKESIAKGWVPNFTTMK 360 (402)
Q Consensus 290 ~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (402)
..+...|.. .++.++|..+|++..+.| +...+..+...|... +++++|..++++..+.+ +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 556666665 677777777777776653 344555555555554 66666666666666544 334444
Q ss_pred HHHHHHHcCC---ChHHHHHHHHHHHh
Q 041936 361 SLVTGLAGAS---KVSEAKELIGLVKE 384 (402)
Q Consensus 361 ~l~~~~~~~g---~~~~a~~~~~~~~~ 384 (402)
.+...|.+.| +.++|.+.|++..+
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 4555554434 45555555555554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-16 Score=132.94 Aligned_cols=238 Identities=13% Similarity=0.058 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCC----HhhHH
Q 041936 147 AFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSI--KPN----ASSFG 220 (402)
Q Consensus 147 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~ 220 (402)
.+..+...+...|++++|...|++..+.. .+...+..+...+...|++++|.+.++++.+... .++ ..++.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 44445555555555555555555554332 3444555555555555555555555555444210 011 34555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG 300 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 300 (402)
.+..++...|++++|...|++..+.. |+. ..+...|++++|...++++..... .+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhc
Confidence 56666666666666666666665532 332 234455666777777777666521 13456666777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 041936 301 NFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIG 380 (402)
Q Consensus 301 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 380 (402)
++++|...+++..+... .+...+..+...|...|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.++
T Consensus 154 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777777777776532 246677777777777888888888887777654 4457777777888888888888888888
Q ss_pred HHHhcC------CCChhhHHHHHhc
Q 041936 381 LVKEKF------TKNVDTWNEIEAG 399 (402)
Q Consensus 381 ~~~~~~------~~~~~~~~~l~~~ 399 (402)
+..+.. |.+...+..+..+
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHhChhhcCCCchHHHHHHHHHh
Confidence 877765 5555555555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-15 Score=139.08 Aligned_cols=339 Identities=11% Similarity=0.001 Sum_probs=231.1
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhc-------CCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhc----C---CCC
Q 041936 42 TRAALTLLKSESNPEKILEICRAAAL-------TPESHLDRLAFSIAINKLSEANYFNGISQYLEELKT----R---PDL 107 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~---~~~ 107 (402)
++..-.+....|+.++|++.++.+.. .........+|+.+...+...|++++|...+++... . ...
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~ 133 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence 44455566778999999999977632 111223457899999999999999999999987761 1 112
Q ss_pred CchHHHHHHHHHHHh--cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHchhhcCCCCCHH
Q 041936 108 QNERFHAHSIILYGQ--ANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA---LTIAKDYKEVKRVFIEFPKTYGIKPDLD 182 (402)
Q Consensus 108 ~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 182 (402)
....++.....++.. .+++++|+..|++..+.. |.+...+..+..+ +...++.++|++.+++.++.. +.+..
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~ 210 (472)
T 4g1t_A 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDNQY 210 (472)
T ss_dssp CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHH
T ss_pred hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--CcchH
Confidence 234556555555554 457999999999998875 5566666666555 345677788999998876542 34556
Q ss_pred HHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 041936 183 TYNRVIKAFCE----SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRI 258 (402)
Q Consensus 183 ~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 258 (402)
.+..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 66666555544 467889999999988764 4567789999999999999999999999998865 44566666666
Q ss_pred HHHHcc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041936 259 HSLCKL-------------------RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP 319 (402)
Q Consensus 259 ~~~~~~-------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 319 (402)
.+|... +..++|...+++..+.... +..++..+...|...|++++|...|++..+....+
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 555322 2356788888887765322 45678889999999999999999999998864433
Q ss_pred CH--HhHHHHHH-HHHccCChHHHHHHHHHHHhCC-----------------------CCCCHHHHHHHHHHHHcCCChH
Q 041936 320 NS--SVYFTMVY-FMCKGGDYETALGFCKESIAKG-----------------------WVPNFTTMKSLVTGLAGASKVS 373 (402)
Q Consensus 320 ~~--~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~ 373 (402)
.. ..+..+.. .....|+.++|...+++.++.. -+.+..+|..+..+|...|+++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~ 447 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQ 447 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 22 12233332 3457899999999888876542 1445678899999999999999
Q ss_pred HHHHHHHHHHhcC
Q 041936 374 EAKELIGLVKEKF 386 (402)
Q Consensus 374 ~a~~~~~~~~~~~ 386 (402)
+|++.|++..+..
T Consensus 448 ~A~~~y~kALe~~ 460 (472)
T 4g1t_A 448 QADEDSERGLESG 460 (472)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998863
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=147.07 Aligned_cols=251 Identities=10% Similarity=0.144 Sum_probs=112.9
Q ss_pred HhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 041936 86 SEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVK 165 (402)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 165 (402)
.+.|++++|.++++++. .+.+|..++.++.+.|++++|++.|.+ .+|...|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 35688999999999973 225899999999999999999999965 367779999999999999999999
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 166 RVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 82 KYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 988777543 5567889999999999999999998885 367789999999999999999999999977
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 041936 246 GMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYF 325 (402)
Q Consensus 246 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 325 (402)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ..++.-..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 36999999999999999999999998 27899999999999999999996655442 23444456
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 041936 326 TMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIG 380 (402)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 380 (402)
.++..|.+.|++++|..+++..+... +-....|+-+.-+|.+- .+++..+-++
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~ 264 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLE 264 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 78999999999999999999998765 56677787777777654 3343333333
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-14 Score=132.32 Aligned_cols=345 Identities=8% Similarity=0.015 Sum_probs=236.3
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH-HH
Q 041936 42 TRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII-LY 120 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~ 120 (402)
+...+.. ...|+.+.|..+++.+.... +.+...|...+..+.+.|++++|..+|+.+.... |+..+|...+. ..
T Consensus 16 w~~l~~~-~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 16 WSILIRE-AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVR 90 (530)
T ss_dssp HHHHHHH-HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHH
Confidence 3344553 55789999999999997653 3367789999999999999999999999998543 36667766664 33
Q ss_pred HhcCCHHHHHH----HHHHhHh-CCCC-CCHHHHHHHHHHHHH---------cCCHHHHHHHHHHchhhcCCCCCHHHHH
Q 041936 121 GQANMTEHAVR----TFKEMDE-HKLR-HSVGAFNALLLALTI---------AKDYKEVKRVFIEFPKTYGIKPDLDTYN 185 (402)
Q Consensus 121 ~~~~~~~~A~~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 185 (402)
...|+++.|.+ +|+.... .|.. ++...|...+..... .|+++.|..+|++.++. ...+....|.
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~ 169 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWR 169 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHH
Confidence 45677776665 7776654 3433 467788888887665 78999999999998752 1111122332
Q ss_pred HHHHHH-------------HhcCChh------------------------------------------------------
Q 041936 186 RVIKAF-------------CESSDSS------------------------------------------------------ 198 (402)
Q Consensus 186 ~li~~~-------------~~~~~~~------------------------------------------------------ 198 (402)
...... ...++++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 211100 0011122
Q ss_pred ------HHHHHHHHHHhCCCCCCHhhHHHHHHHHhc-------cCCHH-------HHHHHHHHHHHCCCCCChhhHHHHH
Q 041936 199 ------SAYSILAEMDRKSIKPNASSFGALVAGFYK-------EEKYE-------DVNKVLQMMERYGMKSGVSMYNVRI 258 (402)
Q Consensus 199 ------~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll 258 (402)
.+..+|++.... .+.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++
T Consensus 250 ~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp SHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 333344444443 12345566666666654 68876 8889999888632345678888888
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHccC
Q 041936 259 HSLCKLRKCAEAKALLDEMLSKGMKPN-S-VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYF-MCKGG 335 (402)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g 335 (402)
..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|..+|++..+... .+...|...... +...|
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcC
Confidence 8899999999999999999885 443 2 4788888888888999999999999887532 123333322222 33588
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCh----hhHHHHH
Q 041936 336 DYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNV----DTWNEIE 397 (402)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~ 397 (402)
+.++|..+|+..++.. +.+...|..++..+.+.|+.++|..+|++.....+.+. ..|...+
T Consensus 406 ~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470 (530)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 9999999999888764 44678888889989999999999999999888644333 2565433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.6e-16 Score=126.73 Aligned_cols=198 Identities=10% Similarity=0.004 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 041936 180 DLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIH 259 (402)
Q Consensus 180 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 259 (402)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34444455555555555555555555554432 2234445555555555555555555555555443 233444555555
Q ss_pred HHHcc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 041936 260 SLCKL-----------RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMV 328 (402)
Q Consensus 260 ~~~~~-----------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 328 (402)
++... |++++|...|++..+.... +...+..+..++...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 6666777766666655222 45566666666667777777777777766655 4566666666
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 329 YFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
.+|...|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++.-
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 67777777777777777766653 4456666666667777777777776666543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.4e-14 Score=138.87 Aligned_cols=322 Identities=12% Similarity=0.129 Sum_probs=172.4
Q ss_pred CCCccchHHHHHHHhcCCChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHH
Q 041936 36 LTSKDKTRAALTLLKSESNPEKILEICRAAALTPE-SHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHA 114 (402)
Q Consensus 36 ~~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 114 (402)
...........+.+...|.|.+|+++++.....+. +.-+...-+.++....+. +..+..++.+.+. .-. ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-~~d------~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-NYD------AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-hcc------HH
Confidence 34555667788889999999999999999986654 222344455555554444 3444444444433 111 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCC---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHK---------------------LRHSVGAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
.+...+...|.+++|..+|++..... -.-+..+|..+..++...|++++|++.|.+.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 24444555555555555555531000 0012334444555555555555555555332
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhh
Q 041936 174 TYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSM 253 (402)
Q Consensus 174 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (402)
-|...|..++.++.+.|++++|.++|....+.. ++....+.++.+|++.+++++..... + .++...
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence 133444445555555555555555554444332 22222223444455554444322221 1 233334
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
|..+...|...|++++|..+|... ..|..+..++++.|++++|.+.+++. .+..+|..+..+|..
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 444555555555555555555542 24555555555555555555555544 133455555555555
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcCC
Q 041936 334 GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGLP 401 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 401 (402)
.|++..|...... +..++..+..++..|.+.|.+++|+.+++......+.....|+-|...|+
T Consensus 1263 ~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred hhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 5555555544332 23456677788899999999999999998887766666667766655543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=9e-15 Score=123.46 Aligned_cols=210 Identities=14% Similarity=0.063 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 041936 181 LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHS 260 (402)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 260 (402)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666777777777777777777776653 3356677777777777788888888777777654 3456677777777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHH
Q 041936 261 LCKLRKCAEAKALLDEMLSKGMKP-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYET 339 (402)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 339 (402)
+...|++++|.++++++.+.+..| +...+..+...+...|++++|...+.+..+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888877632334 355677777788888888888888888776532 246677778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHH
Q 041936 340 ALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWN 394 (402)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 394 (402)
|..+++++.+.. +.+...+..+...+.+.|++++|.+.++++.+..|.+...+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888887754 456777777888888888888888888888877666555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-15 Score=126.44 Aligned_cols=225 Identities=12% Similarity=0.049 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcC-CCCC----HHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYG-IKPD----LDTYNR 186 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p~----~~~~~~ 186 (402)
.+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+++..+... ..++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444555555555555555555555544 4455555555555555555555555555533210 0011 345555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 041936 187 VIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRK 266 (402)
Q Consensus 187 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (402)
+...+...|++++|...|+++.+. .|+. ..+...|++++|...++.+.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 555555666666666666655553 2222 23344455666666666655543 2334455556666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 041936 267 CAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKE 346 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (402)
+++|...++++.+.... +..++..+..++...|++++|...+++..+... .+...+..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666666666654222 455566666666666666666666666665421 2355566666666666666666666666
Q ss_pred HHhC
Q 041936 347 SIAK 350 (402)
Q Consensus 347 ~~~~ 350 (402)
+.+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6553
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-15 Score=125.14 Aligned_cols=195 Identities=11% Similarity=-0.014 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. +.+...+..+...
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 334444444444455555555554444433 3344444444444444555555555444443321 2233344444444
Q ss_pred HHhc-----------CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 041936 191 FCES-----------SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIH 259 (402)
Q Consensus 191 ~~~~-----------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 259 (402)
+... |++++|...|++..+.. +-+...+..+..++...|++++|+..|++..+.. .+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 4444 55555555555555432 2234445555555555555555555555555544 44455555555
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041936 260 SLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIM 312 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 312 (402)
+|...|++++|...|++..+.... +...+..+...+...|++++|+..+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555555555544211 3444555555555555555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-15 Score=127.94 Aligned_cols=241 Identities=10% Similarity=-0.018 Sum_probs=116.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhc
Q 041936 151 LLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPN--ASSFGALVAGFYK 228 (402)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~ 228 (402)
....+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++++.+.+..++ ...|..+...+..
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3344444444444444444443321 11222444444444455555555555554444211111 1124445555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041936 229 EEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKF 308 (402)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 308 (402)
.|++++|.+.|++..+.. +.+..++..+...|...|++++|...|++..+.. +.+...+..+...+...+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554433 2334455555555555555555555555555441 11334444444222233456666666
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHccCC---hHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHcCCChHHHHHH
Q 041936 309 YRIMSNSGLSPNSSVYFTMVYFMCKGGD---YETALGFCKESIAKG-WVPN------FTTMKSLVTGLAGASKVSEAKEL 378 (402)
Q Consensus 309 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~~ 378 (402)
|++..+... .+...+..+...+...|+ +++|...++++.+.. -.|+ ..+|..+...|.+.|++++|.+.
T Consensus 165 ~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 665555321 124444455555555555 555665555554431 0122 13555566666666777777777
Q ss_pred HHHHHhcCCCChhhHHHH
Q 041936 379 IGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 379 ~~~~~~~~~~~~~~~~~l 396 (402)
|+++.+..|.|...+..+
T Consensus 244 ~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 244 WKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcCccHHHHHHHh
Confidence 776666666666555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-14 Score=120.51 Aligned_cols=222 Identities=10% Similarity=-0.010 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHchhhcCCCCCHHHHH
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI----AKDYKEVKRVFIEFPKTYGIKPDLDTYN 185 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 185 (402)
...+..+...+...|++++|+..|++..+ +.+...+..+...|.. .+++++|...|++..+. + +...+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHH
Confidence 33444455555555666666666655555 2233445555555555 55555555555555332 1 444555
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 041936 186 RVIKAFCE----SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK----EEKYEDVNKVLQMMERYGMKSGVSMYNVR 257 (402)
Q Consensus 186 ~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (402)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 555555555555555543 44445555555555 555555555555555433 23334444
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041936 258 IHSLCK----LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK----DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVY 329 (402)
Q Consensus 258 l~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 329 (402)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444444 455555555555544432 23344444444444 455555555555444432 1333444444
Q ss_pred HHHc----cCChHHHHHHHHHHHhC
Q 041936 330 FMCK----GGDYETALGFCKESIAK 350 (402)
Q Consensus 330 ~~~~----~g~~~~a~~~~~~~~~~ 350 (402)
.|.. .+++++|.+++++..+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHc
Confidence 4444 44445555554444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-14 Score=118.93 Aligned_cols=210 Identities=10% Similarity=0.044 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 041936 181 LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHS 260 (402)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 260 (402)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445555555556666666666666555442 2234555556666666666666666666665543 3345556666666
Q ss_pred HHcc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChH
Q 041936 261 LCKL-RKCAEAKALLDEMLSKGMKPN-SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYE 338 (402)
Q Consensus 261 ~~~~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 338 (402)
+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...+.++.+... .+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHH
Confidence 6666 666666666666665222232 45566666667777777777777776665422 23556666777777777777
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHH
Q 041936 339 TALGFCKESIAKGWV-PNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWN 394 (402)
Q Consensus 339 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 394 (402)
+|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+..|.+.....
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 7777777766653 3 45666666666667777777777777777665555544443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.8e-13 Score=124.34 Aligned_cols=340 Identities=8% Similarity=0.017 Sum_probs=235.5
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhcCCcchHHH----HHHHhhc-CC-CCCchH
Q 041936 39 KDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKL-SEANYFNGISQ----YLEELKT-RP-DLQNER 111 (402)
Q Consensus 39 ~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~-~~-~~~~~~ 111 (402)
...+..........|+++.|.++|+.+.... |+...|...+... ...|++++|.+ +|+.... .| .+.+..
T Consensus 46 ~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~ 122 (530)
T 2ooe_A 46 GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQ 122 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHH
Confidence 3445567777778899999999999887553 4566676666533 34577777665 5555542 12 234556
Q ss_pred HHHHHHHHHHh---------cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH-------------HcCCHH-------
Q 041936 112 FHAHSIILYGQ---------ANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALT-------------IAKDYK------- 162 (402)
Q Consensus 112 ~~~~li~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~------- 162 (402)
+|...+....+ .|+++.|..+|++..+.........|........ ..++++
T Consensus 123 ~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~ 202 (530)
T 2ooe_A 123 IWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAK 202 (530)
T ss_dssp HHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHH
Confidence 66666665544 5778888888887766211111122322111000 011122
Q ss_pred -----------------------------------------------------HHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 163 -----------------------------------------------------EVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 163 -----------------------------------------------------~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
.+..+|++.+... +-+...|..++.
T Consensus 203 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~ 280 (530)
T 2ooe_A 203 EYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQ 280 (530)
T ss_dssp HHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3444555554332 334556666666
Q ss_pred HHHh-------cCChh-------HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--hhh
Q 041936 190 AFCE-------SSDSS-------SAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG--VSM 253 (402)
Q Consensus 190 ~~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 253 (402)
.+.+ .|+++ +|.++|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+.. |+ ...
T Consensus 281 ~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 358 (530)
T 2ooe_A 281 YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLV 358 (530)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHH
T ss_pred HHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHH
Confidence 6665 68887 899999999873234467889999999999999999999999999853 44 257
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYG-FCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMC 332 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 332 (402)
|..++..+.+.|++++|..+|++..+... .+...|...... +...|+.++|..+|+...+.. .-+...|..++..+.
T Consensus 359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 359 YIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 99999999999999999999999987632 233333332222 346899999999999988753 225788999999999
Q ss_pred ccCChHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 041936 333 KGGDYETALGFCKESIAKGW-VP--NFTTMKSLVTGLAGASKVSEAKELIGLVKEKFT 387 (402)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (402)
+.|+.++|..+|++....+. .| ....|...+....+.|+.+.+..+++++.+..|
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999998741 22 244788888888899999999999999988755
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.8e-15 Score=125.72 Aligned_cols=244 Identities=11% Similarity=0.068 Sum_probs=148.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC--HHHHHHHHHH
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD--LDTYNRVIKA 190 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~ 190 (402)
+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..+. ...++ ...|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHH
Confidence 3344555666777777777777766654 344446666666777777777777777666542 11111 2236666667
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHH
Q 041936 191 FCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEA 270 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 270 (402)
+...|++++|.+.|++..+.. +.+..++..+..++...|++++|.+.+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777666643 2345566777777777777777777777666553 34455555555233333477777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHhHHHHHHHHHccCChHHH
Q 041936 271 KALLDEMLSKGMKPNSVTYSHFIYGFCKDGN---FEEAKKFYRIMSNSG-LSPN------SSVYFTMVYFMCKGGDYETA 340 (402)
Q Consensus 271 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a 340 (402)
...|+++.+.... +...+..+..++...|+ +++|...+++..+.. ..|+ ...|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777777665221 35566666666666666 666777776665531 1122 24566677777777888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHH
Q 041936 341 LGFCKESIAKGWVPNFTTMKSL 362 (402)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l 362 (402)
...++++.+.. +.+......+
T Consensus 241 ~~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 241 DAAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHhcC-ccHHHHHHHh
Confidence 88887777654 3344444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-15 Score=124.75 Aligned_cols=211 Identities=12% Similarity=0.035 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 041936 181 LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHS 260 (402)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 260 (402)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555555666666666666666665542 3345556666666666666666666666665543 3345556666666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH
Q 041936 261 LCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETA 340 (402)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 340 (402)
+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666665432 2455666666667777777777777776665422 2455666667777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 341 LGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
...++++.+.. +.+..++..+..++.+.|++++|.+.++++.+..+.+...+..+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 77777766653 44566677777777777777777777777777666666665544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-13 Score=123.81 Aligned_cols=307 Identities=9% Similarity=-0.051 Sum_probs=219.9
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHhhc--------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC-----
Q 041936 73 LDRLAFSIAINKLSEANYFNGISQYLEELKT--------RPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH----- 139 (402)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----- 139 (402)
.....|+.+...+...|++++|++.+++... ...+....+|..+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456799999999999999999999987652 123445567888999999999999999999987642
Q ss_pred C--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHHhCCC
Q 041936 140 K--LRHSVGAFNALLLALTIA--KDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA---FCESSDSSSAYSILAEMDRKSI 212 (402)
Q Consensus 140 ~--~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~~g~ 212 (402)
+ ......++..+..++... +++++|+..|++..+.. +-+...+..+... +...++.++|++.+++..+..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 123456677666666554 46999999999987652 2344445444444 445688899999999888764
Q ss_pred CCCHhhHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 041936 213 KPNASSFGALVAGFY----KEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVT 288 (402)
Q Consensus 213 ~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 288 (402)
+.+..++..+...+. ..+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.... +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 335566666655544 3567889999999988765 567788999999999999999999999999886332 4566
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 289 YSHFIYGFCKD-------------------GNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 289 ~~~l~~~~~~~-------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
+..+..+|... +..+.|...+....+... .+...+..+...|...|++++|...|++.++
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 66666555322 235677888888776532 2456788899999999999999999999998
Q ss_pred CCCCCCHH--HHHHHHH-HHHcCCChHHHHHHHHHHHhc
Q 041936 350 KGWVPNFT--TMKSLVT-GLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 350 ~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~ 385 (402)
....+... .+..+.. .+...|+.++|++.|++..+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 75333221 2223322 245789999999999887654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=130.40 Aligned_cols=183 Identities=11% Similarity=-0.034 Sum_probs=81.7
Q ss_pred CCcchHHHHHHHhhcCCC---CCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 041936 89 NYFNGISQYLEELKTRPD---LQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVK 165 (402)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 165 (402)
|++++|.+.++.+..... +.+...+..+...+...|++++|+..|+++.+.+ +.+..+|..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555555543211 1223444445555555555555555555555443 334455555555555555555555
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 166 RVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
..|++..+.. +.+...+..+...+...|++++|.+.|+++.+. .|+.......+..+...|++++|...+++....
T Consensus 98 ~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 98 EAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5555554321 223444555555555555555555555555443 122222222223333444455555555444333
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 246 GMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 246 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
. +++...+ .++..+...++.++|...+++..
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHC
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHh
Confidence 2 1222222 23333444444444444444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-14 Score=116.62 Aligned_cols=201 Identities=7% Similarity=-0.065 Sum_probs=102.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI 188 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 188 (402)
+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 34445555555666666666666666655543 3445555555566666666666666665554331 22444555555
Q ss_pred HHHHhc-CChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 041936 189 KAFCES-SDSSSAYSILAEMDRKSIKP-NASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRK 266 (402)
Q Consensus 189 ~~~~~~-~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (402)
..+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 555555 55555555555555521112 23445555555555555555555555554433 2234445555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041936 267 CAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMS 313 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 313 (402)
+++|...++++.+.....+...+..+...+...|+.+.+..+++.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 55555555555443221233444444444445555555555555544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-15 Score=127.62 Aligned_cols=248 Identities=10% Similarity=0.029 Sum_probs=194.0
Q ss_pred HhcCCHHHHHHHHHHhHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 121 GQANMTEHAVRTFKEMDEHKL---RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
...|++++|+..|+++.+... +.+..++..+..++...|++++|...|++..+.. +.+..+|..+...+...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCH
Confidence 345789999999999987632 1246778889999999999999999999997653 44678899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 277 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (402)
++|.+.|+++.+.. +.+..++..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999998864 3467889999999999999999999999998864 55555555556667789999999999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 041936 278 LSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP---NSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVP 354 (402)
Q Consensus 278 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 354 (402)
.... +++...+. ++..+...++.++|...+.......... +...+..+...|...|++++|...++++.+.. +.
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~ 247 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VH 247 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CT
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-ch
Confidence 7753 23444444 7777888889999999999887653211 15778889999999999999999999999864 22
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHH
Q 041936 355 NFTTMKSLVTGLAGASKVSEAKELI 379 (402)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~a~~~~ 379 (402)
+.. ....++...|++++|++.+
T Consensus 248 ~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCH---HHHHHHHHHHHHHHC----
T ss_pred hHH---HHHHHHHHHHHHHhhHHHH
Confidence 333 3355677788888888776
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-13 Score=116.29 Aligned_cols=229 Identities=10% Similarity=-0.028 Sum_probs=163.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhh
Q 041936 143 HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE----SSDSSSAYSILAEMDRKSIKPNASS 218 (402)
Q Consensus 143 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~ 218 (402)
-+..++..+...+...|++++|+..|++..+ +-+...+..+...|.. .+++++|.++|++..+.+ +...
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 3456667777777777888888888877754 3345667777777777 778888888888777765 5667
Q ss_pred HHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041936 219 FGALVAGFYK----EEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCK----LRKCAEAKALLDEMLSKGMKPNSVTYS 290 (402)
Q Consensus 219 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~ 290 (402)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 7777777777 778888888887777754 55667777777777 778888888888777764 455666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041936 291 HFIYGFCK----DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK----GGDYETALGFCKESIAKGWVPNFTTMKSL 362 (402)
Q Consensus 291 ~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (402)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|..++++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 67777766 777888888887777653 45566667777777 778888888887777764 25666667
Q ss_pred HHHHHc----CCChHHHHHHHHHHHhcCCCCh
Q 041936 363 VTGLAG----ASKVSEAKELIGLVKEKFTKNV 390 (402)
Q Consensus 363 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 390 (402)
...|.+ .+++++|.+.|++..+..+++.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 777777 7778888888877777644433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-14 Score=120.31 Aligned_cols=200 Identities=12% Similarity=0.051 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
..+..+...+...|++++|.++++.+... .+.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEI-DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45677777778888888888888887733 34456677777778888888888888888877664 45677777777788
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHH
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKP-DLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYED 234 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 234 (402)
...|++++|.++++++.+ .+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888877754 22233 44566677777777777777777777776653 3345666677777777777777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 235 VNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
|...++++.+.. +.+...+..+...+...|+.++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777766543 345555666666666777777777777776654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=9.7e-15 Score=130.34 Aligned_cols=234 Identities=9% Similarity=0.016 Sum_probs=172.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHchhhcCCCCCHHHHHHH
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKD-YKEVKRVFIEFPKTYGIKPDLDTYNRV 187 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~l 187 (402)
....+..+..++...|++++|+..+++..+.+ +-+...|+.+..++...|+ +++|+..|++.++.. +-+...|..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 45667777778888899999999999888776 6678888888888888886 999999998887653 4466788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-cCC
Q 041936 188 IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCK-LRK 266 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~ 266 (402)
..++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++.. +.+...|+.+..++.+ .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 888888888888888888888764 3467788888888888888888888888888765 4567778888888877 555
Q ss_pred HHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC----
Q 041936 267 CAEA-----KALLDEMLSKGMKPNSVTYSHFIYGFCKDG--NFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGG---- 335 (402)
Q Consensus 267 ~~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---- 335 (402)
.++| +..|++.++.... +...|..+...+...| ++++|++.+.++ +. ...+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 4666 4677777765322 4566777777777766 577777777776 32 2234566667777776653
Q ss_pred -----ChHHHHHHHHHH-HhC
Q 041936 336 -----DYETALGFCKES-IAK 350 (402)
Q Consensus 336 -----~~~~a~~~~~~~-~~~ 350 (402)
..++|.++++++ .+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHh
Confidence 246777777777 444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-14 Score=128.29 Aligned_cols=232 Identities=7% Similarity=-0.005 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC-HHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 75 RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANM-TEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
...|..+...+...|++++|++.++++.. ..+.+...|..+..++...|+ +++|+..|++..+.+ +.+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~-l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE-LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH-hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 45677777777888888888888888773 345566777777778888886 888888888888776 667788888888
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc-cCCH
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK-EEKY 232 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~~~~ 232 (402)
++...|++++|+..|+++++.. +-+...|..+..++...|++++|++.|+++++.. +-+...|+.+..++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 8888888888888888887653 4466778888888888888888888888888764 3367778888888877 5554
Q ss_pred HHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 041936 233 EDV-----NKVLQMMERYGMKSGVSMYNVRIHSLCKLR--KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG----- 300 (402)
Q Consensus 233 ~~a-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----- 300 (402)
++| +..+++..... +-+...|+.+...+...| ++++|.+.+.++ +. ...+...+..+..+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 666 47777777654 445677777777777777 578888888777 32 2335667777777777763
Q ss_pred ----CHHHHHHHHHHH-Hh
Q 041936 301 ----NFEEAKKFYRIM-SN 314 (402)
Q Consensus 301 ----~~~~a~~~~~~m-~~ 314 (402)
..++|.++++++ .+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKE 347 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 247888888887 55
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=9.2e-15 Score=122.54 Aligned_cols=201 Identities=10% Similarity=0.047 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
....|..+...+...|++++|..+++++.. ..+.+...+..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE-ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHT-TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 334566666666677777777777777663 334455666666666777777777777777766554 445666666667
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYE 233 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 233 (402)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 7777777777777776665432 3345556666666666666666666666665542 234555666666666666666
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 234 DVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
+|...++++.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 6666666665543 334455555666666666666666666665554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.64 E-value=9.2e-13 Score=130.27 Aligned_cols=288 Identities=12% Similarity=0.139 Sum_probs=224.6
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 041936 42 TRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYG 121 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 121 (402)
...+-..+...|.+++|.++|+..... ....+.++ ...+++++|.++.++. ....+|..+..++.
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~~------~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDVN------TSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCH------HHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHH
Confidence 344566677888889999998886311 11223332 2678899998888865 34678889999999
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAY 201 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 201 (402)
+.|++++|++.|.+. .|...|..++.++.+.|++++|++.|....+. .++....+.++.+|++.+++++..
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHH
Confidence 999999999999663 66788899999999999999999999887543 344444446999999999988644
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 041936 202 SILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG 281 (402)
Q Consensus 202 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (402)
.+. + .++...|..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++..
T Consensus 1188 ~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A 1188 EFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred HHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence 442 2 346677778999999999999999999985 369999999999999999999999873
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 041936 282 MKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKS 361 (402)
Q Consensus 282 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (402)
+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|..+++..+... +-....|+-
T Consensus 1249 ---n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE 1319 (1630)
T 1xi4_A 1249 ---STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 1319 (1630)
T ss_pred ---CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH
Confidence 67899999999999999999988776533 366778899999999999999999999888665 445567766
Q ss_pred HHHHHHcC--CChHHHHHHHHH
Q 041936 362 LVTGLAGA--SKVSEAKELIGL 381 (402)
Q Consensus 362 l~~~~~~~--g~~~~a~~~~~~ 381 (402)
+...|.+- ++..++.+.|..
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 66666653 344455555543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-14 Score=131.68 Aligned_cols=133 Identities=13% Similarity=0.062 Sum_probs=73.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----C-CCHH
Q 041936 253 MYNVRIHSLCKLRKCAEAKALLDEMLSKGMK-PN----SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL----S-PNSS 322 (402)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~-~~~~ 322 (402)
++..+...|...|++++|...+++..+.... ++ ...+..+...|...|++++|...+++..+... . ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555555666666666666666655432100 01 12455566666666666666666666554210 0 1134
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 323 VYFTMVYFMCKGGDYETALGFCKESIAK----G-WVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
++..+...|...|++++|...+++..+. + ......++..+...|.+.|++++|.+.+++..+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5556666666677777777766666543 1 0111335556666677777777777777766553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-15 Score=132.89 Aligned_cols=299 Identities=10% Similarity=-0.002 Sum_probs=216.0
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCC-C
Q 041936 73 LDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQN----ERFHAHSIILYGQANMTEHAVRTFKEMDEH----KLR-H 143 (402)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~-~ 143 (402)
.....+......+...|++++|...++++.... +.+ ...+..+...+...|++++|...+++..+. +-. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 345567777888889999999999998888442 222 356777888899999999999999886542 211 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHHhcCC--------------------hhH
Q 041936 144 SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LDTYNRVIKAFCESSD--------------------SSS 199 (402)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~--------------------~~~ 199 (402)
...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2456778888999999999999998877543211112 3477888888899999 899
Q ss_pred HHHHHHHHHhC----CCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHccCCHHH
Q 041936 200 AYSILAEMDRK----SIK-PNASSFGALVAGFYKEEKYEDVNKVLQMMERYGM-KSG----VSMYNVRIHSLCKLRKCAE 269 (402)
Q Consensus 200 a~~~~~~~~~~----g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~ 269 (402)
|.+.+++..+. +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99888876542 211 1234678888899999999999999988765310 111 3378888889999999999
Q ss_pred HHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHccCChHH
Q 041936 270 AKALLDEMLSK----GMKPN-SVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSP-NSSVYFTMVYFMCKGGDYET 339 (402)
Q Consensus 270 a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~ 339 (402)
|...+++..+. +..+. ..++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999987653 11111 457788889999999999999999987753 1111 14577788889999999999
Q ss_pred HHHHHHHHHhC----CC-CCCHHHHHHHHHHHHcCCCh
Q 041936 340 ALGFCKESIAK----GW-VPNFTTMKSLVTGLAGASKV 372 (402)
Q Consensus 340 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 372 (402)
|...+++..+. +. .....++..+...+...|+.
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 99999887653 21 12245666677777777665
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-14 Score=130.08 Aligned_cols=274 Identities=10% Similarity=0.021 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCch----HHHHHHHHHHHhcCCHHHHHHHHHHhHhC----C-CCCCHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNE----RFHAHSIILYGQANMTEHAVRTFKEMDEH----K-LRHSVG 146 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~ 146 (402)
..+..+...+...|++++|...++++.... +.+. ..+..+...|...|++++|+..+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 445566777888999999999999988542 2232 46778888899999999999999987653 1 123456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhc---C-CCCCHHHHHHHHHHHHhcCC-----------------hhHHHHHHH
Q 041936 147 AFNALLLALTIAKDYKEVKRVFIEFPKTY---G-IKPDLDTYNRVIKAFCESSD-----------------SSSAYSILA 205 (402)
Q Consensus 147 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~p~~~~~~~li~~~~~~~~-----------------~~~a~~~~~ 205 (402)
++..+...|...|++++|...+++..+.. + .+....++..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 78888899999999999999998875431 1 12234578888889999999 999999988
Q ss_pred HHHhC----CC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 206 EMDRK----SI-KPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMK-SG----VSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 206 ~~~~~----g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
+..+. +. .....++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 11 112347888889999999999999999988653210 11 2378888999999999999999999
Q ss_pred HHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHccCChHHHHHHHH
Q 041936 276 EMLSKGMK-----PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLS-PNSSVYFTMVYFMCKGGDYETALGFCK 345 (402)
Q Consensus 276 ~~~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 345 (402)
+..+.... ....++..+...|...|++++|...+++..+. +.. ....++..+...|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 88753111 11457888899999999999999999988764 111 114577888999999999999999999
Q ss_pred HHHhC
Q 041936 346 ESIAK 350 (402)
Q Consensus 346 ~~~~~ 350 (402)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.7e-14 Score=126.26 Aligned_cols=276 Identities=12% Similarity=-0.002 Sum_probs=211.2
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHchhh---cCCCC-C
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHS----VGAFNALLLALTIAKDYKEVKRVFIEFPKT---YGIKP-D 180 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~ 180 (402)
....+......+...|++++|...|++..+.+ +.+ ..++..+...+...|++++|...+++..+. .+..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34445567778999999999999999998864 344 357888999999999999999999886432 11122 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----C-CCCHhhHHHHHHHHhccCC--------------------HHHH
Q 041936 181 LDTYNRVIKAFCESSDSSSAYSILAEMDRKS----I-KPNASSFGALVAGFYKEEK--------------------YEDV 235 (402)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g----~-~~~~~~~~~l~~~~~~~~~--------------------~~~a 235 (402)
..++..+...+...|++++|...+++..+.. - .....++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 4578888999999999999999999876541 0 1114478888899999999 9999
Q ss_pred HHHHHHHHHC----CC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 041936 236 NKVLQMMERY----GM-KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGM-KPN----SVTYSHFIYGFCKDGNFEEA 305 (402)
Q Consensus 236 ~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a 305 (402)
.+.+++..+. +. +....++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999876542 11 11245688888999999999999999998875311 112 23788889999999999999
Q ss_pred HHHHHHHHhC----CCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHcCCChHHH
Q 041936 306 KKFYRIMSNS----GLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAK----GW-VPNFTTMKSLVTGLAGASKVSEA 375 (402)
Q Consensus 306 ~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a 375 (402)
...+++..+. +..+. ..++..+...|...|++++|...+++..+. +. .....++..+...|.+.|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999988753 11111 457788899999999999999999988764 11 11156778889999999999999
Q ss_pred HHHHHHHHhc
Q 041936 376 KELIGLVKEK 385 (402)
Q Consensus 376 ~~~~~~~~~~ 385 (402)
.+.+++..+.
T Consensus 327 ~~~~~~al~~ 336 (406)
T 3sf4_A 327 MHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-14 Score=125.27 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=74.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 041936 253 MYNVRIHSLCKLRKCAEAKALLDEMLSKGMK-PN----SVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSP-NSS 322 (402)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~ 322 (402)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4455555555566666666665555432000 01 225555666666666666666666665432 1000 134
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 323 VYFTMVYFMCKGGDYETALGFCKESIAK----G-WVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
++..+...+...|++++|...++++.+. + ......++..+...|.+.|++++|.+.+++..+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5566666677777777777777666543 1 0111335666677777777777777777776653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-12 Score=110.51 Aligned_cols=217 Identities=11% Similarity=0.050 Sum_probs=112.6
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHchhhcCCCC-CHHHHHHHHHHH
Q 041936 127 EHAVRTFKEMDEHKLRHSVGAFNALLLALTI-------AKDY-------KEVKRVFIEFPKTYGIKP-DLDTYNRVIKAF 191 (402)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 191 (402)
++|..+|++..+.. +.+...|..++..+.. .|++ ++|..+|++.++. +.| +...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 45666666666543 4555666666655542 3553 5666666655431 123 334555666666
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC-Hh-hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-ccCCHH
Q 041936 192 CESSDSSSAYSILAEMDRKSIKPN-AS-SFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLC-KLRKCA 268 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~ 268 (402)
...|++++|.++|+++.+. .|+ .. +|..++..+.+.|++++|.++|++..+.. +.+...|........ ..|+++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666553 222 22 55555555555666666666666655543 223333332222211 245566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHhHHHHHHHHHccCChHHHHHHHH
Q 041936 269 EAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG-LSP--NSSVYFTMVYFMCKGGDYETALGFCK 345 (402)
Q Consensus 269 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~ 345 (402)
+|..+|++..+... -+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666655554321 134455555555555556666666666555541 232 23445555555555555555555555
Q ss_pred HHHhC
Q 041936 346 ESIAK 350 (402)
Q Consensus 346 ~~~~~ 350 (402)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=121.52 Aligned_cols=275 Identities=9% Similarity=0.014 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CC-CCCH
Q 041936 75 RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQN----ERFHAHSIILYGQANMTEHAVRTFKEMDEH----KL-RHSV 145 (402)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~ 145 (402)
...+......+...|++++|..+++++.... +.+ ...+..+...+...|++++|.+.+++..+. +. +...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3455666778889999999999999988542 223 366778888999999999999999987642 11 2235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHHhcCC--------------------hhHHH
Q 041936 146 GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LDTYNRVIKAFCESSD--------------------SSSAY 201 (402)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~--------------------~~~a~ 201 (402)
.++..+...+...|++++|...+++..+...-.++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 67888899999999999999999987543211222 3478888899999999 99999
Q ss_pred HHHHHHHhC----CC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHccCCHHHHH
Q 041936 202 SILAEMDRK----SI-KPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMK-SG----VSMYNVRIHSLCKLRKCAEAK 271 (402)
Q Consensus 202 ~~~~~~~~~----g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~ 271 (402)
+.+++..+. +. .....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999887543 11 112446888889999999999999999998764211 11 237888889999999999999
Q ss_pred HHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHccCChHHHH
Q 041936 272 ALLDEMLSKGMK-PN----SVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLS-PNSSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 272 ~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~ 341 (402)
..+++..+.... .+ ..++..+...+...|++++|...+++..+. +.. ....++..+...|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999988753111 11 457788889999999999999999988754 111 11457778899999999999999
Q ss_pred HHHHHHHhC
Q 041936 342 GFCKESIAK 350 (402)
Q Consensus 342 ~~~~~~~~~ 350 (402)
..++++.+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999876
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-13 Score=120.16 Aligned_cols=297 Identities=9% Similarity=-0.012 Sum_probs=202.5
Q ss_pred HHhcCCcchHHHHHHHhhcCC----CCCchHHHHHHHHH--HHhcCCHHHHH-----------HHHHHhHhCCCCCCHHH
Q 041936 85 LSEANYFNGISQYLEELKTRP----DLQNERFHAHSIIL--YGQANMTEHAV-----------RTFKEMDEHKLRHSVGA 147 (402)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~--~~~~~~~~~A~-----------~~~~~~~~~~~~~~~~~ 147 (402)
+.+.+++++|..+++++.... ...+...|..++.. ....++++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 456788999998888876321 12222333333321 22233344444 5666654321 11121
Q ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--C---
Q 041936 148 ------FNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LDTYNRVIKAFCESSDSSSAYSILAEMDRKS--I--- 212 (402)
Q Consensus 148 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g--~--- 212 (402)
+......+...|++++|...|++..+...-.++ ..++..+...|...|++++|...+++..+.. .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222556778889999999999888543111222 3578888899999999999999998876531 1
Q ss_pred -CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-C----ChhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CC
Q 041936 213 -KPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMK-S----GVSMYNVRIHSLCKLRKCAEAKALLDEMLSK----GM 282 (402)
Q Consensus 213 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~ 282 (402)
.....+++.+..+|...|++++|...+++..+.... + ...++..+..+|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112357888889999999999999999887653100 1 1247888899999999999999999998762 22
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHhHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCC
Q 041936 283 -KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSPNSSVYFTMVYFMCKGGD---YETALGFCKESIAKGWVP 354 (402)
Q Consensus 283 -~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~ 354 (402)
+....++..+...|...|++++|...+++..+. +-......+..+...+...|+ +++|..++++.. ..+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHH
Confidence 223567888999999999999999999987753 111122335677888888998 777777776651 1123
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 355 NFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
....+..+...|.+.|++++|.+.+++..+.
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456778899999999999999999988763
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-12 Score=104.28 Aligned_cols=167 Identities=10% Similarity=-0.032 Sum_probs=96.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI 188 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 188 (402)
+..+|..+...|.+.|++++|++.|++..+.+ +-+..++..+..+|...|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 34455566666666666666666666665554 4455566666666666666666666666654332 23344555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH
Q 041936 189 KAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCA 268 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 268 (402)
..+...++++.+.+.+.+..+.. +.+...+..+..++.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 55666666666666666555542 2345555555666666666666666666555543 334555555556666666666
Q ss_pred HHHHHHHHHHHC
Q 041936 269 EAKALLDEMLSK 280 (402)
Q Consensus 269 ~a~~~~~~~~~~ 280 (402)
+|.+.|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 666666655543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-13 Score=108.26 Aligned_cols=166 Identities=9% Similarity=0.027 Sum_probs=88.3
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041936 216 ASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYG 295 (402)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 295 (402)
..+|..+...|...|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 4445555555555555555555555555443 334445555555555555555555555555544222 33444445555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHH
Q 041936 296 FCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEA 375 (402)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 375 (402)
+...++++.|...+.+...... -+...+..+...|...|++++|.+.+++..+.. +.+..++..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 5555555555555555554321 134455555555555666666666665555543 34455555555666666666666
Q ss_pred HHHHHHHHhc
Q 041936 376 KELIGLVKEK 385 (402)
Q Consensus 376 ~~~~~~~~~~ 385 (402)
.+.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 6666655554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.8e-12 Score=108.53 Aligned_cols=217 Identities=10% Similarity=0.060 Sum_probs=130.9
Q ss_pred chHHHHHHHhhcCCCCCchHHHHHHHHHHH-------hcCCH-------HHHHHHHHHhHh-CCCCCCHHHHHHHHHHHH
Q 041936 92 NGISQYLEELKTRPDLQNERFHAHSIILYG-------QANMT-------EHAVRTFKEMDE-HKLRHSVGAFNALLLALT 156 (402)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 156 (402)
++|..+|++... ..+.+...|..++..+. +.|++ ++|..+|++..+ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~-~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLL-VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 456666666663 23455556666655554 24664 677777777665 23 445556667777777
Q ss_pred HcCCHHHHHHHHHHchhhcCCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh-ccCCHH
Q 041936 157 IAKDYKEVKRVFIEFPKTYGIKPD-LD-TYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFY-KEEKYE 233 (402)
Q Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~ 233 (402)
..|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|.++|++..+.. +.+...|........ ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 777777777777766532 343 22 56666666667777777777777776653 223334433322221 256777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041936 234 DVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG-MKP--NSVTYSHFIYGFCKDGNFEEAKKFYR 310 (402)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~ 310 (402)
+|.++|++..+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++......|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777666543 3455666666667777777777777777776652 233 24456666666666777777777777
Q ss_pred HHHhC
Q 041936 311 IMSNS 315 (402)
Q Consensus 311 ~m~~~ 315 (402)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-14 Score=121.92 Aligned_cols=170 Identities=18% Similarity=0.097 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhc------C
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEH-------KLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTY------G 176 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~ 176 (402)
...+..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|...+++..+.. .
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 344445555555555666555555555441 112233445555556666666666666655553321 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC----
Q 041936 177 IKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK------SI-KPNASSFGALVAGFYKEEKYEDVNKVLQMMERY---- 245 (402)
Q Consensus 177 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 245 (402)
.+....++..+...|...|++++|.+.++++.+. +. +.....+..+...+...|++++|.+.++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1122344555555666666666666666555432 11 112334555555566666666666666555442
Q ss_pred --C-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 041936 246 --G-MKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 246 --~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (402)
+ .+....++..+..+|...|++++|...++++.+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 011223445555555555566655555555543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-13 Score=124.58 Aligned_cols=192 Identities=7% Similarity=-0.113 Sum_probs=85.2
Q ss_pred chHHHHHHHHHHHhcCCH-HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH
Q 041936 109 NERFHAHSIILYGQANMT-EHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV 187 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 187 (402)
+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|++..+. .|+...+..+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~l 176 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH---CKNKVSLQNL 176 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCHHHHHHH
Confidence 344444444444455555 55555555444433 333444444555555555555555555444322 3444444444
Q ss_pred HHHHHhc---------CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc--------CCHHHHHHHHHHHHHCCCC--
Q 041936 188 IKAFCES---------SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKE--------EKYEDVNKVLQMMERYGMK-- 248 (402)
Q Consensus 188 i~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~-- 248 (402)
...+... |++++|.+.|++..+.. +.+...|..+..+|... |++++|.+.|++..+.. +
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~ 254 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKA 254 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCc
Confidence 4444444 44444444444444432 22334444444444444 44444444444444432 1
Q ss_pred -CChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041936 249 -SGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKK 307 (402)
Q Consensus 249 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 307 (402)
.+...|..+..+|...|++++|.+.|++..+.... +...+..+..++...|++++|..
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444444444444444444444444444433111 23334444444444444444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-12 Score=119.92 Aligned_cols=313 Identities=8% Similarity=-0.025 Sum_probs=184.1
Q ss_pred HHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCc---chHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 041936 47 TLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYF---NGISQYLEELKTRPDLQNERFHAHSIILYGQA 123 (402)
Q Consensus 47 ~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 123 (402)
..+...|+++.|+++|+...... +...+..+...+...|+. ++|.++|++.... +...+..+...+...
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 34445677888888887765432 122444455555556666 7788887777633 333344444434444
Q ss_pred C-----CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH-----------------------------------cC----
Q 041936 124 N-----MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI-----------------------------------AK---- 159 (402)
Q Consensus 124 ~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------------------~~---- 159 (402)
+ ++++|+..|++..+.|. ++ .+..|...|.. .+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 3 67778888887776652 22 33333333333 33
Q ss_pred CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc----CCH
Q 041936 160 DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS---DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKE----EKY 232 (402)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----~~~ 232 (402)
..+.+..++.... ..+...+..|...|...| +.++|+++|++..+.| .++...+..+...|... +++
T Consensus 160 ~~~~a~~~~~~a~-----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 160 HLDDVERICKAAL-----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GHHHHHHHHHHHT-----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 2233333333332 223336777778888888 8888888888888876 44555556677777554 688
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHH-H--HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHH
Q 041936 233 EDVNKVLQMMERYGMKSGVSMYNVRIHS-L--CKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG-----NFEE 304 (402)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~ 304 (402)
++|.+.|++.. . -+...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 88888888877 3 345556666665 3 45788888888888888776 5666667777766 45 8888
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHH
Q 041936 305 AKKFYRIMSNSGLSPNSSVYFTMVYFMCK----GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG----ASKVSEAK 376 (402)
Q Consensus 305 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 376 (402)
|..+|++.. . -+...+..+...|.. ..++++|..+|++..+.| +......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 888888877 3 355666677776765 348888888888888876 33445556666654 45788888
Q ss_pred HHHHHHHhcCCCChh
Q 041936 377 ELIGLVKEKFTKNVD 391 (402)
Q Consensus 377 ~~~~~~~~~~~~~~~ 391 (402)
.+|+...+...++..
T Consensus 379 ~~~~~A~~~g~~~a~ 393 (452)
T 3e4b_A 379 VFSQLAKAQDTPEAN 393 (452)
T ss_dssp HHHHHHHTTCCHHHH
T ss_pred HHHHHHHHCCCHHHH
Confidence 888888776444433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-12 Score=115.38 Aligned_cols=305 Identities=10% Similarity=0.019 Sum_probs=210.7
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHhhcCC-CC--CCCHHHHHHHHHH--HHhcCCcchHH-----------HHHHHhhcC
Q 041936 41 KTRAALTLLKSESNPEKILEICRAAALTP-ES--HLDRLAFSIAINK--LSEANYFNGIS-----------QYLEELKTR 104 (402)
Q Consensus 41 ~~~~~l~~l~~~~~~~~al~~~~~~~~~~-~~--~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~ 104 (402)
.++.+...+. .++.+.|.++.+.....- .. .++...|-.++.. ....++++.+. +.++.+...
T Consensus 15 ~l~~w~~~i~-~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~ 93 (383)
T 3ulq_A 15 KINEWYMYIR-RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK 93 (383)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc
Confidence 4455555555 568888888887764321 11 2233333333332 11223444444 667666532
Q ss_pred CCCCch----HHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhc
Q 041936 105 PDLQNE----RFHAHSIILYGQANMTEHAVRTFKEMDEH----KLRH-SVGAFNALLLALTIAKDYKEVKRVFIEFPKTY 175 (402)
Q Consensus 105 ~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 175 (402)
+...+. ..+......+...|++++|+..|++..+. +-++ ...++..+..+|...|++++|...+++..+..
T Consensus 94 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 173 (383)
T 3ulq_A 94 QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY 173 (383)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 211111 12223556788999999999999998763 1111 34678889999999999999999998875532
Q ss_pred CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 176 GIKPD-----LDTYNRVIKAFCESSDSSSAYSILAEMDRK----SIK-PNASSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 176 ~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
.-.++ ..+++.+...|...|++++|.+.+++..+. +-. ....++..+..+|...|++++|.+.+++..+.
T Consensus 174 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 174 KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 22222 457888999999999999999999988753 111 11247888999999999999999999988762
Q ss_pred ----CC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 041936 246 ----GM-KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG----MKPNSVTYSHFIYGFCKDGN---FEEAKKFYRIMS 313 (402)
Q Consensus 246 ----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~ 313 (402)
+. +....++..+...|.+.|++++|...+++..+.. -......+..+...+...|+ +++|..++++.
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~- 332 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK- 332 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-
T ss_pred HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-
Confidence 22 3446778889999999999999999999887531 11122345678888888998 67777777665
Q ss_pred hCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 314 NSGLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 314 ~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
+..|+ ...+..+...|...|++++|...+++..+
T Consensus 333 --~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 333 --MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333 45677889999999999999999998865
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-12 Score=113.52 Aligned_cols=311 Identities=8% Similarity=-0.040 Sum_probs=204.7
Q ss_pred CCCCHHHHHHHHHHH--HhcCCcchHHHHHHHhhcCC----CCCchHHHHHHHHH--HHhcCCHHHHH---------HHH
Q 041936 71 SHLDRLAFSIAINKL--SEANYFNGISQYLEELKTRP----DLQNERFHAHSIIL--YGQANMTEHAV---------RTF 133 (402)
Q Consensus 71 ~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~--~~~~~~~~~A~---------~~~ 133 (402)
..|+..+-..+-..+ ...+++++|.++++++.... ...+..+|..++.. ..-.+.++.+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 344555555565565 77889999999998876221 12223333333332 11112222222 555
Q ss_pred HHhHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHH
Q 041936 134 KEMDEHKLRHSV----GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LDTYNRVIKAFCESSDSSSAYSILA 205 (402)
Q Consensus 134 ~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~ 205 (402)
+.+.....+.+. ..+......+...|++++|+..|++..+...-.++ ..++..+...|...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 554432111111 12233455667889999999999887543221233 4567888889999999999999998
Q ss_pred HHHhC----CC-CC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHccCCHHHHHHHH
Q 041936 206 EMDRK----SI-KP-NASSFGALVAGFYKEEKYEDVNKVLQMMERY----GMK-SGVSMYNVRIHSLCKLRKCAEAKALL 274 (402)
Q Consensus 206 ~~~~~----g~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (402)
+..+. +. .+ ...+++.+..+|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 87653 11 11 2456788889999999999999999887652 111 12356778888999999999999999
Q ss_pred HHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHhHHHHHHHHHccCC---hHHHHH
Q 041936 275 DEMLS-----KGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL----SPNSSVYFTMVYFMCKGGD---YETALG 342 (402)
Q Consensus 275 ~~~~~-----~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~l~~~~~~~g~---~~~a~~ 342 (402)
++..+ .... ...++..+...+.+.|++++|...+++..+... ......+..+...+...++ +.+|..
T Consensus 246 ~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99887 4222 366788889999999999999999999876421 1123445666667777888 777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 343 FCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
++++.. ..+.....+..+...|.+.|++++|.+.|++..+
T Consensus 325 ~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 325 YFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 766521 1122345667788999999999999999998865
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.7e-13 Score=121.90 Aligned_cols=214 Identities=11% Similarity=0.010 Sum_probs=163.0
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 041936 125 MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY-KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSI 203 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 203 (402)
.+++++..++...... +.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+...|...|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3567777777766544 56778888888888888998 99999988886653 34577888888888888999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhcc---------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc--------CC
Q 041936 204 LAEMDRKSIKPNASSFGALVAGFYKE---------EKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKL--------RK 266 (402)
Q Consensus 204 ~~~~~~~g~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~ 266 (402)
|++..+. .|+...+..+..++... |++++|.+.|++..+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 8888876 46677888888888888 88888888888887765 45677788888888877 88
Q ss_pred HHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 041936 267 CAEAKALLDEMLSKGMK--PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFC 344 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 344 (402)
+++|...|++..+.... -+...|..+..+|...|++++|...|++..+... -+...+..+...+...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888775220 2667788888888888888888888888877532 24556777777777777777777654
Q ss_pred H
Q 041936 345 K 345 (402)
Q Consensus 345 ~ 345 (402)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=119.34 Aligned_cols=171 Identities=9% Similarity=0.035 Sum_probs=136.4
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcC-------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC------C
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTR-------PDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH------K 140 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~ 140 (402)
+..++..+...+...|++++|..+++++... ..+.....+..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888888999999999999999888742 34455677888888999999999999999988753 2
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhc-----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 041936 141 -LRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTY-----GI-KPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK--- 210 (402)
Q Consensus 141 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 210 (402)
.+....++..+...|...|++++|...+++..+.. +. +.....+..+...+...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 13345678889999999999999999999886542 22 224556888899999999999999999988764
Q ss_pred ---CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 211 ---SIKP-NASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 211 ---g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
+..| ...++..+..++...|++++|.+.++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2122 345788889999999999999999998875
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.1e-12 Score=114.35 Aligned_cols=250 Identities=11% Similarity=0.068 Sum_probs=179.7
Q ss_pred HHHHHHHHhcCCHH----HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHchhhcCCCCCHHHHHH
Q 041936 114 AHSIILYGQANMTE----HAVRTFKEMDEHKLRHSVGAFNALLLALTIAK---DYKEVKRVFIEFPKTYGIKPDLDTYNR 186 (402)
Q Consensus 114 ~~li~~~~~~~~~~----~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~ 186 (402)
..+...|...+.++ .+..+++... ..+...+..|..+|...| +.++|+.+|++..+.. +++...+..
T Consensus 145 ~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~ 218 (452)
T 3e4b_A 145 LAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDS 218 (452)
T ss_dssp HHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 34444455555333 3333333332 223337888889999999 9999999999986542 556666677
Q ss_pred HHHHHHhc----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 041936 187 VIKAFCES----SDSSSAYSILAEMDRKSIKPNASSFGALVAG-F--YKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIH 259 (402)
Q Consensus 187 li~~~~~~----~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 259 (402)
+...|... +++++|.++|++.. .| +...+..+... + ...+++++|.+.|++..+.| +...+..+..
T Consensus 219 Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~ 291 (452)
T 3e4b_A 219 VARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGK 291 (452)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 77777665 79999999999988 43 56677777776 4 56899999999999999876 5667777877
Q ss_pred HHHccC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 041936 260 SLCKLR-----KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK----DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYF 330 (402)
Q Consensus 260 ~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 330 (402)
.|. .| ++++|...|++.. .| +...+..+...|.. ..++++|..+|.+..+.|. ......|...
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~ 363 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQL 363 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHH
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHH
Confidence 777 55 9999999999888 33 56677777777766 4499999999999998764 3455666667
Q ss_pred HHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 331 MCK----GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 331 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
|.. ..+.++|..+++...+.| .++.......+......++.++|.++.++..+.
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 764 458999999999999988 333333333333334455677888888776553
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-11 Score=108.35 Aligned_cols=303 Identities=7% Similarity=-0.052 Sum_probs=199.8
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhcCCCCCch----HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-CCCH----HHH
Q 041936 78 FSIAINKLSEANYFNGISQYLEELKTRPDLQNE----RFHAHSIILYGQANMTEHAVRTFKEMDEHKL-RHSV----GAF 148 (402)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~ 148 (402)
+......+...|++++|...++.........+. ..+..+...+...|++++|.+.+++..+... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344455666789999999999887744322222 2455566778888999999999988764210 1122 335
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhc---CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C--CHhh
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFPKTY---GIK--P-DLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIK--P--NASS 218 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~--~--~~~~ 218 (402)
..+...+...|++++|...+++..+.. +.. | ....+..+...+...|++++|...+++..+.... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 667778888999999999998875432 221 2 2345666778888899999999999887754221 1 2345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 041936 219 FGALVAGFYKEEKYEDVNKVLQMMERYGMKSGV-SMYN-----VRIHSLCKLRKCAEAKALLDEMLSKGMKPN---SVTY 289 (402)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~ 289 (402)
+..+...+...|++++|...+++.....-.++. ..+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 677788888899999999999887653211111 1122 233446788999999999888775432211 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041936 290 SHFIYGFCKDGNFEEAKKFYRIMSNS----GLSPNS-SVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVT 364 (402)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (402)
..+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++..... +. .-.+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHH
Confidence 66778888889999999988887643 222222 255666777888899999999998888752 11 11234
Q ss_pred HHHcCCChHHHHHHHHHHHhcCCC
Q 041936 365 GLAGASKVSEAKELIGLVKEKFTK 388 (402)
Q Consensus 365 ~~~~~g~~~~a~~~~~~~~~~~~~ 388 (402)
.+...| +....+++.+....+.
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHcc--HHHHHHHHHHHhCCCC
Confidence 455555 6677778777765443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-11 Score=97.17 Aligned_cols=158 Identities=9% Similarity=0.015 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES 194 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 194 (402)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHh
Confidence 33334444444444444444443332 2333444444444444444444444444443221 22233344444444444
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 041936 195 SDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALL 274 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (402)
|++++|.+.++++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+...+...|++++|...+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444443321 1233333333444444444444444444433322 222333333333344444444444444
Q ss_pred HHH
Q 041936 275 DEM 277 (402)
Q Consensus 275 ~~~ 277 (402)
++.
T Consensus 168 ~~~ 170 (186)
T 3as5_A 168 KKA 170 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.1e-11 Score=105.31 Aligned_cols=266 Identities=9% Similarity=-0.023 Sum_probs=161.7
Q ss_pred HhcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCCcchHHHHHHHhhc----CCCCC-chHHHHHHHHH
Q 041936 49 LKSESNPEKILEICRAAALTPESHLDR----LAFSIAINKLSEANYFNGISQYLEELKT----RPDLQ-NERFHAHSIIL 119 (402)
Q Consensus 49 l~~~~~~~~al~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~ 119 (402)
+...|+++.|.+.++......+. .+. ..+..+...+...|++++|.+.+++... .+... ....+..+...
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 34567888888888776543221 122 2455556667777888888888877662 11111 11224456667
Q ss_pred HHhcCCHHHHHHHHHHhHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCC---CCCHHHHHHHHH
Q 041936 120 YGQANMTEHAVRTFKEMDEH----KLR--H-SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGI---KPDLDTYNRVIK 189 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~ 189 (402)
+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++......- .....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 77888888888888776542 211 2 2345566777778888888888888776543211 112345667777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC--HhhHH----HHHHHHhccCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHH
Q 041936 190 AFCESSDSSSAYSILAEMDRKSIKPN--ASSFG----ALVAGFYKEEKYEDVNKVLQMMERYGMKSG---VSMYNVRIHS 260 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~ 260 (402)
.+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 77888888888888887764311111 11111 223346677888888888877765332111 2245566677
Q ss_pred HHccCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 261 LCKLRKCAEAKALLDEMLSK----GMKPNS-VTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+.+....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 77888888888888776542 222222 25556667777788888888888877764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-11 Score=109.21 Aligned_cols=303 Identities=9% Similarity=0.019 Sum_probs=206.7
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhcCC-CC--CCCHHHHHHHHHH--HHhcCCcchHH---------HHHHHhhcCCCC
Q 041936 42 TRAALTLLKSESNPEKILEICRAAALTP-ES--HLDRLAFSIAINK--LSEANYFNGIS---------QYLEELKTRPDL 107 (402)
Q Consensus 42 ~~~~l~~l~~~~~~~~al~~~~~~~~~~-~~--~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~~~~~~~~~ 107 (402)
++.....+. .++.+.|.++++...... .. ..+...|-.++.. ..-.+.++.+. +.++.+.....+
T Consensus 16 l~~wy~~i~-~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 94 (378)
T 3q15_A 16 INEWYKMIR-QFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKK 94 (378)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHH
T ss_pred HHHHHHHHH-HcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCC
Confidence 334444444 668899999988753211 11 1233333444332 12224444444 667766532221
Q ss_pred Cch----HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCC
Q 041936 108 QNE----RFHAHSIILYGQANMTEHAVRTFKEMDEHKL-RH----SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIK 178 (402)
Q Consensus 108 ~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 178 (402)
.+. ..+......+...|++++|+..|++..+... .+ ...++..+..+|...|+++.|...+++..+...-.
T Consensus 95 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 95 LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 111 1233345567899999999999999875321 12 24578889999999999999999998875432211
Q ss_pred C-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHHHH----
Q 041936 179 P-----DLDTYNRVIKAFCESSDSSSAYSILAEMDRK----SIK-PNASSFGALVAGFYKEEKYEDVNKVLQMMER---- 244 (402)
Q Consensus 179 p-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 244 (402)
+ ...+++.+...|...|++++|.+.|++..+. +.. ....++..+..+|...|++++|...+++..+
T Consensus 175 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 2 2457888999999999999999999987653 211 1235788899999999999999999998876
Q ss_pred -CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC---C-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC
Q 041936 245 -YGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMK---P-NSVTYSHFIYGFCKDGN---FEEAKKFYRIMSNSG 316 (402)
Q Consensus 245 -~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~ 316 (402)
.. +....++..+...+.+.|++++|...+++..+.... | ....+..+...+...++ +++|+..++. .+
T Consensus 255 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~ 330 (378)
T 3q15_A 255 KVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KN 330 (378)
T ss_dssp HCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TT
T ss_pred hCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CC
Confidence 33 334677888999999999999999999998874221 2 23456666677777888 7777777765 32
Q ss_pred CCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 317 LSPN-SSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 317 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
..|+ ...+..+...|...|++++|...+++..+
T Consensus 331 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 331 LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2233 35667888999999999999999998865
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-11 Score=95.39 Aligned_cols=166 Identities=10% Similarity=0.060 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 041936 75 RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA 154 (402)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (402)
...+..+...+...|++++|.+.++.+.. ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYD-ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCC-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34577778888899999999999999874 345567788888999999999999999999998775 6678889999999
Q ss_pred HHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHH
Q 041936 155 LTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYED 234 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 234 (402)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999986653 4567888899999999999999999999998764 4467889999999999999999
Q ss_pred HHHHHHHHHHC
Q 041936 235 VNKVLQMMERY 245 (402)
Q Consensus 235 a~~~~~~~~~~ 245 (402)
|...+++..+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.2e-11 Score=98.67 Aligned_cols=208 Identities=11% Similarity=0.095 Sum_probs=163.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 041936 178 KPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVR 257 (402)
Q Consensus 178 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (402)
+.|+..+......+...|++++|.+.|++..+...+++...+..+..++...|++++|++.+++..+.. +.+...|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346688889999999999999999999999887543677888889999999999999999999999875 4567788999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHHHH
Q 041936 258 IHSLCKLRKCAEAKALLDEMLSKGMKPNS-------VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN---SSVYFTM 327 (402)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l 327 (402)
..+|...|++++|...+++..+.... +. ..|..+...+...|++++|+..|++..+. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999999886322 34 45778888899999999999999999885 454 4567777
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHH
Q 041936 328 VYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 397 (402)
..+|... +..+++++...+ ..+...|.... ....+.+++|...+++..+..|.+......+-
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 7777544 445566666554 33455554443 33456789999999999998888877666553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-11 Score=116.77 Aligned_cols=167 Identities=13% Similarity=0.053 Sum_probs=109.0
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH
Q 041936 108 QNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV 187 (402)
Q Consensus 108 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 187 (402)
.+...+..+..+|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|+..|++.++.. +-+...|..+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL 83 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 345566666666777777777777777766654 4456666677777777777777777777665442 2345566677
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 041936 188 IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKC 267 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 267 (402)
...+...|++++|++.|++..+.. +-+...|..+..+|...|++++|++.|++..+.. +-+...|..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 777777777777777777666643 2345666777777777777777777777766654 34456666677777777777
Q ss_pred HHHHHHHHHHHH
Q 041936 268 AEAKALLDEMLS 279 (402)
Q Consensus 268 ~~a~~~~~~~~~ 279 (402)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776666666543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-11 Score=116.52 Aligned_cols=166 Identities=13% Similarity=0.048 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 041936 180 DLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIH 259 (402)
Q Consensus 180 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 259 (402)
+..+|+.|...|.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|++.|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 35567777777777777777777777766652 2245666777777777777777777777766654 344566666777
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHH
Q 041936 260 SLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYET 339 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 339 (402)
+|.+.|++++|++.|++..+.... +...|..+..+|...|++++|+..|++..+.... +...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 777777777777777776665222 4556666666777777777777777766664211 35566666666666777777
Q ss_pred HHHHHHHHHh
Q 041936 340 ALGFCKESIA 349 (402)
Q Consensus 340 a~~~~~~~~~ 349 (402)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=105.20 Aligned_cols=157 Identities=11% Similarity=0.049 Sum_probs=74.9
Q ss_pred hcCCcchHHHHHHHhhc-------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC------C-CCCCHHHHHHHH
Q 041936 87 EANYFNGISQYLEELKT-------RPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH------K-LRHSVGAFNALL 152 (402)
Q Consensus 87 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~ 152 (402)
..|++++|..++++... ...+.....+..+...|...|++++|+..+++..+. + .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34566666666655441 112233445555566666666666666666655432 1 112234455555
Q ss_pred HHHHHcCCHHHHHHHHHHchhhc-----C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHhhH
Q 041936 153 LALTIAKDYKEVKRVFIEFPKTY-----G-IKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK------SIKP-NASSF 219 (402)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~~~~~~-----~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~ 219 (402)
.+|...|++++|...+++..+.. . .+....++..+...|...|++++|...++++.+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 55666666666666655553320 0 0112334444555555555555555555544432 0011 12334
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHH
Q 041936 220 GALVAGFYKEEKYEDVNKVLQMME 243 (402)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~ 243 (402)
..+..++...|++++|...+++..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444455555554444443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-10 Score=94.99 Aligned_cols=207 Identities=10% Similarity=0.002 Sum_probs=158.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGA 221 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 221 (402)
+.++..+......+...|++++|+..|++..+.. -+++...+..+..++...|++++|.+.+++..+.. +.+...+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 4567888999999999999999999999997653 12677788889999999999999999999999874 336778999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 041936 222 LVAGFYKEEKYEDVNKVLQMMERYGMKSGV-------SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPN---SVTYSH 291 (402)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~ 291 (402)
+..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++..+. .|+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 9999999999999999999998865 3344 45788888899999999999999999876 454 456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041936 292 FIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSL 362 (402)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (402)
+..+|...| ...++.+...+. .+...|.... ....+.+++|...+++..+.. +-+..+...+
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 777776544 444555555432 2344444443 234567899999999998864 3344444433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-11 Score=103.71 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=119.8
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcC------C-CCCchHHHHHHHHHHHhcCCH
Q 041936 54 NPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTR------P-DLQNERFHAHSIILYGQANMT 126 (402)
Q Consensus 54 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~ 126 (402)
..++|+++++..... .......++..+...+...|++++|...++++... + .+.....+..+...|...|++
T Consensus 23 ~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 101 (283)
T 3edt_B 23 LCKQALEDLEKTSGH-DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY 101 (283)
T ss_dssp HHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccH
Confidence 344555555444322 22335678889999999999999999999998732 2 344567788889999999999
Q ss_pred HHHHHHHHHhHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh------cCCCCCHHHHHHHHHHHHh
Q 041936 127 EHAVRTFKEMDEH------K-LRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT------YGIKPDLDTYNRVIKAFCE 193 (402)
Q Consensus 127 ~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~p~~~~~~~li~~~~~ 193 (402)
++|.+.|++..+. . .+....++..+...+...|++++|...+++..+. ...+....++..+...|..
T Consensus 102 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (283)
T 3edt_B 102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK 181 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999998764 1 1334677888999999999999999999998654 1122245678899999999
Q ss_pred cCChhHHHHHHHHHHhC
Q 041936 194 SSDSSSAYSILAEMDRK 210 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~ 210 (402)
.|++++|.+.++++.+.
T Consensus 182 ~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 182 QGKYQDAETLYKEILTR 198 (283)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999988763
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.6e-09 Score=99.52 Aligned_cols=322 Identities=7% Similarity=-0.022 Sum_probs=181.3
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHhHhCC-CCCCHHHH
Q 041936 73 LDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANM---TEHAVRTFKEMDEHK-LRHSVGAF 148 (402)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~-~~~~~~~~ 148 (402)
-|...|..++..+.+.+.++.+..+|+.+.. ..|.....|...+..-.+.++ ++.+..+|+...... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~-~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHD-RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 3778888888888888888889999988883 367777888888888788888 888999998887653 23788888
Q ss_pred HHHHHHHHHcCCH--------HHHHHHHHHchhhcCC-CCC-HHHHHHHHHHHH---------hcCChhHHHHHHHHHHh
Q 041936 149 NALLLALTIAKDY--------KEVKRVFIEFPKTYGI-KPD-LDTYNRVIKAFC---------ESSDSSSAYSILAEMDR 209 (402)
Q Consensus 149 ~~l~~~~~~~~~~--------~~a~~~~~~~~~~~~~-~p~-~~~~~~li~~~~---------~~~~~~~a~~~~~~~~~ 209 (402)
...+....+.++. +.+.++|+..+...|. .++ ...|...+.... ..++++.+.++|++++.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8877766555443 3345777777666666 554 456666665432 22345566666666664
Q ss_pred CCCCCCHhhHH---HHHHHHh----------ccCCHHH------------------------------------------
Q 041936 210 KSIKPNASSFG---ALVAGFY----------KEEKYED------------------------------------------ 234 (402)
Q Consensus 210 ~g~~~~~~~~~---~l~~~~~----------~~~~~~~------------------------------------------ 234 (402)
.....-..+|. .....+. ...+++.
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 21111111211 1110000 0000111
Q ss_pred -------------------------HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH-HHHHHHHHCCCCCCHHH
Q 041936 235 -------------------------VNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAK-ALLDEMLSKGMKPNSVT 288 (402)
Q Consensus 235 -------------------------a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~p~~~~ 288 (402)
+..+|++..... +-....|-..+..+...|+.++|. .+|++.... ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 122222222211 122333334444444556666665 777766653 2234445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------HHhHHHHHHHHHccCChHHHHHHHHHH
Q 041936 289 YSHFIYGFCKDGNFEEAKKFYRIMSNSG---------LSPN------------SSVYFTMVYFMCKGGDYETALGFCKES 347 (402)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (402)
|...+......|++++|.++|+.+.... ..|+ ...|...+....+.|+.+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5556666666777777777777766531 0121 234666666666667777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHcC-CChHHHHHHHHHHHhcCCCChhhHHHHH
Q 041936 348 IAKGWVPNFTTMKSLVTGLAGA-SKVSEAKELIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 397 (402)
.+.........|...+..-.+. ++.+.|..+|+...+..+.+...|...+
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~ 511 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYL 511 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 6651122233333333333333 3467777777777776666666665444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.28 E-value=4.5e-08 Score=93.34 Aligned_cols=204 Identities=11% Similarity=0.030 Sum_probs=125.4
Q ss_pred HHHHHHHHHhcCChhHHH-HHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC---------CCC---
Q 041936 184 YNRVIKAFCESSDSSSAY-SILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGM---------KSG--- 250 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~--- 250 (402)
|-..+.-+...|+.++|. ++|++.... .+.+...|...+...-+.|++++|.++|+.+.+... .|+
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 333444444566677775 777777654 344555566666667777778888877777765310 121
Q ss_pred ---------hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCC
Q 041936 251 ---------VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKD-GNFEEAKKFYRIMSNSGLSPN 320 (402)
Q Consensus 251 ---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~~ 320 (402)
..+|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+. ++.+.|.++|+...+. ..-+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCc
Confidence 2356666676667777778888887777651111223333322222233 4477888888777765 2224
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC
Q 041936 321 SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVP--NFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKN 389 (402)
Q Consensus 321 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 389 (402)
...+...+......|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+..+.+++.+..|.+
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4555666666667778888888888777653211 34566777777777788888888888887766544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-09 Score=89.96 Aligned_cols=245 Identities=8% Similarity=-0.038 Sum_probs=151.5
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041936 82 INKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY 161 (402)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (402)
++...-.|++..++.-...+. ..........+.++|...|+++.. ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 444556788888777333322 122223344456777777776642 11234444444444333 222
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSI-KPNASSFGALVAGFYKEEKYEDVNKVLQ 240 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (402)
|+..|++.... + +++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 --a~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 --NIEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp --CCHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --HHHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 67777776543 2 45555666777888888888888888888766653 2356677778888888888888888888
Q ss_pred HHHHCCCCC-----ChhhHHHHHHH--HHc--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041936 241 MMERYGMKS-----GVSMYNVRIHS--LCK--LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRI 311 (402)
Q Consensus 241 ~~~~~~~~~-----~~~~~~~ll~~--~~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 311 (402)
+|.+. .| +..+...+..+ ... .++..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88765 35 24444555544 222 33788888888887655 34533334445577888888888888886
Q ss_pred HHhC-----CC----CCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 312 MSNS-----GL----SPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 312 m~~~-----~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
+.+. .. .-|+.+...+|......|+ +|.++++++.+..
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6542 00 2245566455555555666 7778888887763
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=9.9e-10 Score=94.67 Aligned_cols=193 Identities=10% Similarity=0.031 Sum_probs=96.7
Q ss_pred HHHHcCCHHHHHHHHHHchhh---cCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHH
Q 041936 154 ALTIAKDYKEVKRVFIEFPKT---YGIKPD-LDTYNRVIKAFCESSDSSSAYSILAEMDRK----SIKP-NASSFGALVA 224 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~ 224 (402)
.|...|++++|...|.+..+. .|-+++ ..+|+.+...|...|++++|+..|++..+. |-.. -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555544321 111111 234555555555566666665555554432 1000 0234556666
Q ss_pred HHhcc-CCHHHHHHHHHHHHHCCCCC-C----hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH------HHHHHH
Q 041936 225 GFYKE-EKYEDVNKVLQMMERYGMKS-G----VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNS------VTYSHF 292 (402)
Q Consensus 225 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l 292 (402)
+|... |++++|+..|++..+..... + ..++..+...+.+.|++++|...|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 66664 67777766666655421000 0 234566666666777777777777766664322111 134555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HhHHHHHHHHH--ccCChHHHHHHHHHHH
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSGLSPNS------SVYFTMVYFMC--KGGDYETALGFCKESI 348 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 348 (402)
..++...|++++|...|++..+. .|+. ..+..++.+|. ..+++++|...|+.+.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 66666677777777777666553 2221 12333444443 3445556665554443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-08 Score=86.51 Aligned_cols=240 Identities=10% Similarity=0.026 Sum_probs=135.8
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 041936 51 SESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAV 130 (402)
Q Consensus 51 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 130 (402)
-.|++..++.-.... .+ ..++ ..-..+.+++...|+++.. ....+....+..+. .|...+ |+
T Consensus 25 y~G~yq~~i~e~~~~--~~-~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a~ 86 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKF--SK-VTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----NI 86 (310)
T ss_dssp TTTCHHHHTHHHHTS--SC-CCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----CC
T ss_pred HhhHHHHHHHHHHhc--Cc-cchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----HH
Confidence 456777666633222 11 2222 2333445666666666542 11222222332222 233322 66
Q ss_pred HHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 131 RTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
..|+++.+.+ +++..++..+..++...|++++|++++.+.+....-.-+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777766654 455555566777777778888888877776432100124556667777777788888888888777664
Q ss_pred CCCC-----CHhhHHHHHHHH--hccC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 041936 211 SIKP-----NASSFGALVAGF--YKEE--KYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG 281 (402)
Q Consensus 211 g~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (402)
.| +..+...+..++ ...| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+..
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44 244555555442 2223 7777888888776542 443333444447777788888888777655420
Q ss_pred -----C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 282 -----M----KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 282 -----~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
. +-|..+...+|......|+ +|.+++.++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 0 1245555455555555665 677777777774
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-09 Score=90.99 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC-HHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHS---VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD-LDTYNR 186 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 186 (402)
..+......+.+.|++++|+..|+++.+.. +.+ ...+..+..+|...|++++|+..|++.++...-.|. ...+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 333344444555555555555555554432 222 344445555555555555555555555443211111 233444
Q ss_pred HHHHHHh--------cCChhHHHHHHHHHHhC
Q 041936 187 VIKAFCE--------SSDSSSAYSILAEMDRK 210 (402)
Q Consensus 187 li~~~~~--------~~~~~~a~~~~~~~~~~ 210 (402)
+..++.. .|++++|...|+++.+.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 4444444 55555555555555443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-09 Score=80.17 Aligned_cols=129 Identities=15% Similarity=0.201 Sum_probs=79.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
|..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|..+++++...+. .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 44555556666666666666666655422 2445555566666666666666666666665432 234556666666666
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 334 GGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
.|++++|..+++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777776666543 345566666667777777777777777766654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=6e-10 Score=96.03 Aligned_cols=208 Identities=12% Similarity=0.050 Sum_probs=154.5
Q ss_pred CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHhccCCHHH
Q 041936 160 DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK----SIKPN-ASSFGALVAGFYKEEKYED 234 (402)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~l~~~~~~~~~~~~ 234 (402)
++++|...|++. ...|...|++++|.+.|++..+. |-+++ ..+|+.+..+|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 478888887765 34567889999999999987653 32222 5689999999999999999
Q ss_pred HHHHHHHHHHCCC---CC--ChhhHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHH
Q 041936 235 VNKVLQMMERYGM---KS--GVSMYNVRIHSLCKL-RKCAEAKALLDEMLSKGMKP-N----SVTYSHFIYGFCKDGNFE 303 (402)
Q Consensus 235 a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~~~~~ 303 (402)
|+..+++..+... .+ ...+++.+..+|... |++++|+..|++..+..... + ..++..+...+...|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 9999998865321 11 145788899999996 99999999999987641110 1 356888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCH------HhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHH--cC
Q 041936 304 EAKKFYRIMSNSGLSPNS------SVYFTMVYFMCKGGDYETALGFCKESIAKGWVPN------FTTMKSLVTGLA--GA 369 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~ 369 (402)
+|+..|++..+....... ..|..+..++...|++++|...+++..+.. |+ ...+..++.++. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCH
Confidence 999999999986433221 156778888999999999999999988642 22 123445566664 45
Q ss_pred CChHHHHHHHHHHHhc
Q 041936 370 SKVSEAKELIGLVKEK 385 (402)
Q Consensus 370 g~~~~a~~~~~~~~~~ 385 (402)
+++++|+..|+.+...
T Consensus 254 ~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHhccCCcc
Confidence 6788888888776543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-09 Score=79.35 Aligned_cols=127 Identities=15% Similarity=0.138 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh
Q 041936 114 AHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE 193 (402)
Q Consensus 114 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 193 (402)
..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...+..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHH
Confidence 344444555555555555555554433 3344455555555555555555555555553321 2233444445555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 194 SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
.|++++|.++++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555544432 22334444444445555555555555544443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-09 Score=89.33 Aligned_cols=188 Identities=9% Similarity=0.003 Sum_probs=115.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCH
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD---LDTYNRVIKAFCESSDSSSAYSILAEMDRKSI--KPNA 216 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~--~~~~ 216 (402)
+.+...+..+...+.+.|++++|+..|+++++.. +.+ ...+..+..+|.+.|++++|...|++..+... +...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 4556777778888888999999999999887653 223 56778888888899999999999998887521 1224
Q ss_pred hhHHHHHHHHhc--------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 041936 217 SSFGALVAGFYK--------EEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVT 288 (402)
Q Consensus 217 ~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 288 (402)
..+..+..++.. .|++++|...|+++.+.. +.+......+.. +..+... -...
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~ 150 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHH
Confidence 566677777777 888888888888887754 222222211100 0000000 0011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHcc----------CChHHHHHHHHHHHhC
Q 041936 289 YSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP--NSSVYFTMVYFMCKG----------GDYETALGFCKESIAK 350 (402)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 350 (402)
+..+...|...|++++|+..|+++.+..... ....+..+..+|... |++++|...++++.+.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 3445555666666666666666665532111 123445555555544 5666666666666654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.7e-08 Score=84.45 Aligned_cols=168 Identities=13% Similarity=0.123 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------
Q 041936 230 EKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCA--EAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN------ 301 (402)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------ 301 (402)
+++++++++++.+.+.. +.+..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 34455555555555443 344444444444444445444 555555555554333 44455444444444443
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh-HHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChHHHHHH
Q 041936 302 FEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDY-ETALGFCKESIAKG--WVPNFTTMKSLVTGLAGASKVSEAKEL 378 (402)
Q Consensus 302 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 378 (402)
++++++.+++++..... |...|+.+...+.+.|+. +.+..+..++.+.+ -+.++..+..+..+|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 66666666666665332 566666666666666653 33444555544322 134666777777777777788888888
Q ss_pred HHHHHhc-CCCChhhHHHHHhcC
Q 041936 379 IGLVKEK-FTKNVDTWNEIEAGL 400 (402)
Q Consensus 379 ~~~~~~~-~~~~~~~~~~l~~~~ 400 (402)
++.+.++ .|.....|+-..+.+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHhccChHHHHHHHHHHhhc
Confidence 8877763 566666666655543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-09 Score=86.54 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=13.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEH 139 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~ 139 (402)
...+...|++++|+..|++..+.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~ 33 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL 33 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 33455566666666666665544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-09 Score=105.42 Aligned_cols=173 Identities=12% Similarity=-0.060 Sum_probs=137.7
Q ss_pred HhcCCHHHHHHHHHHhH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHH
Q 041936 121 GQANMTEHAVRTFKEMD--------EHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFC 192 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 192 (402)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|++..+.. +.+...|..+...+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 67899999999999887 443 5567788888889999999999999999887653 446778888889999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 041936 193 ESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKA 272 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 272 (402)
..|++++|.+.|++..+.. +-+...+..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988764 3356788888899999999999 99999888765 4567788888999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 041936 273 LLDEMLSKGMKPN-SVTYSHFIYGFCKDGN 301 (402)
Q Consensus 273 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 301 (402)
.|++..+. .|+ ...+..+..++...++
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 99988765 444 5567777777766554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-09 Score=84.54 Aligned_cols=161 Identities=11% Similarity=0.055 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH-H
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA-F 191 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~ 191 (402)
+......+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..+. .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 4455566777788888888887776654 556677777777888888888888888777544 2333322222111 1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCCHHHH
Q 041936 192 CESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKS-GVSMYNVRIHSLCKLRKCAEA 270 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a 270 (402)
...+...+|...+++..+.. +-+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12222334566666666542 2245666666666666777777777776666554211 234566666666666666666
Q ss_pred HHHHHHHH
Q 041936 271 KALLDEML 278 (402)
Q Consensus 271 ~~~~~~~~ 278 (402)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.8e-09 Score=85.40 Aligned_cols=161 Identities=10% Similarity=0.032 Sum_probs=84.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHH----------------HHHHHHhcCCHHHHHHHHHHhHhCCCC
Q 041936 79 SIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAH----------------SIILYGQANMTEHAVRTFKEMDEHKLR 142 (402)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~A~~~~~~~~~~~~~ 142 (402)
......+...|++++|...|+..... .+.+...+.. +..+|.+.|++++|+..|++..+.. +
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL-NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 33444555667777777777666522 2222333333 5556666666666666666666554 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHhhHH
Q 041936 143 HSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD--SSSAYSILAEMDRKSIKPNASSFG 220 (402)
Q Consensus 143 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~ 220 (402)
.+...+..+..++...|++++|+..|++.++.. +.+..+|..+...|...|+ .+.+...++.... ..|....+.
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 556666666666666666666666666665432 3344555555555544332 2333333433321 122222233
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
....++...|++++|...|++..+.
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3344444555666666666665543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-09 Score=105.24 Aligned_cols=175 Identities=10% Similarity=-0.016 Sum_probs=145.9
Q ss_pred HhcCCcchHHHHHHHhhc-------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHc
Q 041936 86 SEANYFNGISQYLEELKT-------RPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIA 158 (402)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (402)
...|++++|.+.+++... ...+.+...+..+...+.+.|++++|++.|++..+.+ +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 778999999999999871 2345667788888999999999999999999998876 67889999999999999
Q ss_pred CCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041936 159 KDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKV 238 (402)
Q Consensus 159 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (402)
|++++|+..|++..+.. +-+...|..+..++.+.|++++ .+.|++..+.. +.+...|..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999997653 4466788999999999999999 99999998864 44678899999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCC
Q 041936 239 LQMMERYGMKSGVSMYNVRIHSLCKLRK 266 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 266 (402)
|++..+.+ +.+...+..+..++...++
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99988764 3345677777777766554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.5e-09 Score=88.84 Aligned_cols=164 Identities=11% Similarity=0.030 Sum_probs=84.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH-
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV- 187 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l- 187 (402)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...++++... .|+.......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHH
Confidence 33444455555556666666666666655544 445555556666666666666666666655433 2333222211
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHccCC
Q 041936 188 IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMK-SGVSMYNVRIHSLCKLRK 266 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~ 266 (402)
...+...++.++|.+.+++..+.. +.+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 122444455555555555555442 234455555555555666666666666555554311 113445555555555555
Q ss_pred HHHHHHHHHHH
Q 041936 267 CAEAKALLDEM 277 (402)
Q Consensus 267 ~~~a~~~~~~~ 277 (402)
.++|...|++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 55555555543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.7e-08 Score=81.17 Aligned_cols=176 Identities=13% Similarity=0.093 Sum_probs=95.0
Q ss_pred HHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC----CHHHHHHH
Q 041936 163 EVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE----KYEDVNKV 238 (402)
Q Consensus 163 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 238 (402)
+|.++|++..+. -+...+..+...|...+++++|.++|++..+.| +...+..+...|.. + ++++|.+.
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 345555555332 355556666666666666666666666666654 44555555555555 4 56666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 041936 239 LQMMERYGMKSGVSMYNVRIHSLCK----LRKCAEAKALLDEMLSKGMK-PNSVTYSHFIYGFCK----DGNFEEAKKFY 309 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~~~~~~a~~~~ 309 (402)
|++..+.| +...+..+...|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66665543 34445555555554 55666666666666554321 014455555555555 55566666666
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHcc-C-----ChHHHHHHHHHHHhCC
Q 041936 310 RIMSNSGLSPNSSVYFTMVYFMCKG-G-----DYETALGFCKESIAKG 351 (402)
Q Consensus 310 ~~m~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 351 (402)
++..+.+ .+...+..|...|... | +.++|..++++..+.|
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6665541 1223444444444332 2 5566666666555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.4e-09 Score=99.62 Aligned_cols=164 Identities=11% Similarity=0.001 Sum_probs=117.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 041936 194 SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKAL 273 (402)
Q Consensus 194 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 273 (402)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887763 3457788889999999999999999999998865 45677888889999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc---CChHHHHHHHHHHHhC
Q 041936 274 LDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKG---GDYETALGFCKESIAK 350 (402)
Q Consensus 274 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 350 (402)
+++..+.... +...+..+..+|...|++++|.+.+++..+... .+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998876322 567888899999999999999999999887632 2567788888888888 9999999999998886
Q ss_pred CCCCCHHHHHHH
Q 041936 351 GWVPNFTTMKSL 362 (402)
Q Consensus 351 ~~~~~~~~~~~l 362 (402)
+ +.+...+..+
T Consensus 158 ~-p~~~~~~~~l 168 (568)
T 2vsy_A 158 G-VGAVEPFAFL 168 (568)
T ss_dssp T-CCCSCHHHHT
T ss_pred C-CcccChHHHh
Confidence 5 3334444433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-07 Score=79.52 Aligned_cols=230 Identities=10% Similarity=-0.051 Sum_probs=131.7
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH----Hhc---CCh
Q 041936 127 EHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK--DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAF----CES---SDS 197 (402)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~---~~~ 197 (402)
++|+++++.++..+ +-+..+|+.--.++...| ++++++..++.+.... +-+..+|+.--..+ ... +++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 45666666665554 445555555555555555 6666666666665432 22233333322222 223 556
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH--HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC------HHH
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYE--DVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRK------CAE 269 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~ 269 (402)
++++++++.+.+.. +-+..+|+.-..++.+.|.++ ++++.++++.+.. +.+...|+.-...+.+.+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 66666666666653 335556665555555666666 6667777666655 4555666655555555555 677
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 041936 270 AKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEE-AKKFYRIMSNSG--LSPNSSVYFTMVYFMCKGGDYETALGFCKE 346 (402)
Q Consensus 270 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (402)
+++.+++++...+. |...|+.+...+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 77777777765433 56667666666666665333 444555554432 122556677777777777788888888877
Q ss_pred HHhCCCCCCHHHHHHH
Q 041936 347 SIAKGWVPNFTTMKSL 362 (402)
Q Consensus 347 ~~~~~~~~~~~~~~~l 362 (402)
+.+.--+.....|+..
T Consensus 284 l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHTTCGGGHHHHHHH
T ss_pred HHhccChHHHHHHHHH
Confidence 7753114444444433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.8e-08 Score=79.72 Aligned_cols=177 Identities=12% Similarity=0.003 Sum_probs=111.7
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC----ChhHHHHH
Q 041936 128 HAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS----DSSSAYSI 203 (402)
Q Consensus 128 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~ 203 (402)
+|++.|++..+. -+...+..+...|...+++++|+.+|++..+. -+...+..|...|.. + ++++|.++
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 355566666553 34556666666666677777777777766432 245556666666665 5 67777777
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHc----cCCHHHHHHHH
Q 041936 204 LAEMDRKSIKPNASSFGALVAGFYK----EEKYEDVNKVLQMMERYGMK-SGVSMYNVRIHSLCK----LRKCAEAKALL 274 (402)
Q Consensus 204 ~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~ 274 (402)
|++..+.| +...+..+...|.. .+++++|.+.|++..+.+.. .....+..|..+|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77776654 45566666666665 66777777777777765511 015566666666666 66777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 041936 275 DEMLSKGMKPNSVTYSHFIYGFCKD-G-----NFEEAKKFYRIMSNSGL 317 (402)
Q Consensus 275 ~~~~~~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~m~~~~~ 317 (402)
++..+. ..+...+..+...|... | ++++|..+|+...+.|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 777765 12334555566666542 2 67777777777776653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=8.4e-09 Score=97.67 Aligned_cols=153 Identities=7% Similarity=-0.161 Sum_probs=75.0
Q ss_pred CCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 041936 89 NYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVF 168 (402)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 168 (402)
|++++|.+.+++... ..+.+...+..+...+...|++++|.+.|++..+.. +.+...+..+..+|...|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR-HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455555555555542 233344555555555666666666666666655543 344555555566666666666666666
Q ss_pred HHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc---CCHHHHHHHHHHHHHC
Q 041936 169 IEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKE---EKYEDVNKVLQMMERY 245 (402)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 245 (402)
++..+.. +.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+..++... |++++|.+.+++..+.
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5554432 2234555555566666666666666666555542 22344555555555555 6666666666655554
Q ss_pred C
Q 041936 246 G 246 (402)
Q Consensus 246 ~ 246 (402)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-09 Score=83.13 Aligned_cols=143 Identities=8% Similarity=-0.023 Sum_probs=70.0
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 041936 224 AGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFE 303 (402)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 303 (402)
..+...|++++|++.++...... +.+...+..+...|.+.|++++|.+.|++..+.... +..+|..+..+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 33444455555555555544322 112333444555555555566665555555554221 3455555555555566666
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGF-CKESIAKGWVPNFTTMKSLVTGLAGAS 370 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (402)
+|+..|++..+.... +...+..+...|.+.|+++++.+. ++++.+.. +-++.+|......+...|
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 666666555553211 344555555555555555544333 35554432 334444544444444444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.03 E-value=8.2e-08 Score=79.11 Aligned_cols=61 Identities=8% Similarity=0.007 Sum_probs=44.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041936 256 VRIHSLCKLRKCAEAKALLDEMLSKGMKPN--SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG 316 (402)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 316 (402)
.+...|.+.|++++|...|+++.+...... ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 455677788888888888888877622211 2457777888888888888888888877764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4.6e-08 Score=80.66 Aligned_cols=204 Identities=11% Similarity=-0.075 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH-HHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLR-H-SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL-DTYNRV 187 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l 187 (402)
..+..+...+.+.|++++|+..|+++.+.... + ....+..+..+|.+.|++++|+..|+++++...-.+.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34445566677788888888888887764311 1 13566677778888888888888888876653222211 133344
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCC
Q 041936 188 IKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGV-SMYNVRIHSLCKLRK 266 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~ 266 (402)
..++...+.. .+ ..|..+...+...|++++|...|+++.+.. |+. ..+......
T Consensus 85 g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l------ 139 (225)
T 2yhc_A 85 GLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL------ 139 (225)
T ss_dssp HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH------
T ss_pred HHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH------
Confidence 4444332210 11 112223334455678888888888888754 332 222221110
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHccCChHHHHHHH
Q 041936 267 CAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP--NSSVYFTMVYFMCKGGDYETALGFC 344 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 344 (402)
..+...+. .....+...|.+.|++++|...|+++++..... ....+..+..+|.+.|+.++|.+.+
T Consensus 140 ----~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 140 ----VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp ----HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 00111111 112346778889999999999999999853221 1256788899999999999999999
Q ss_pred HHHHhCC
Q 041936 345 KESIAKG 351 (402)
Q Consensus 345 ~~~~~~~ 351 (402)
+.+...+
T Consensus 208 ~~l~~~~ 214 (225)
T 2yhc_A 208 KIIAANS 214 (225)
T ss_dssp HHHHHCC
T ss_pred HHHHhhC
Confidence 9988864
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.1e-09 Score=81.32 Aligned_cols=161 Identities=12% Similarity=0.018 Sum_probs=93.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH-H
Q 041936 148 FNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAG-F 226 (402)
Q Consensus 148 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~ 226 (402)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 4445566777788888888887775542 3455667777777778888888888777766542 233332222111 1
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 041936 227 YKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP-NSVTYSHFIYGFCKDGNFEEA 305 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 305 (402)
...++..+|...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12122233555666655543 3345556666666666666666666666666553322 234555566666666666666
Q ss_pred HHHHHHHH
Q 041936 306 KKFYRIMS 313 (402)
Q Consensus 306 ~~~~~~m~ 313 (402)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.5e-09 Score=82.10 Aligned_cols=139 Identities=8% Similarity=-0.017 Sum_probs=76.9
Q ss_pred hcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 041936 87 EANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKR 166 (402)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 166 (402)
..|++++|+..++.... ..+.....+..+...|.+.|++++|++.|++..+.+ +-+..+|..+..+|...|++++|+.
T Consensus 9 ~~~~~e~ai~~~~~a~~-~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP-SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSC-SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcc-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 34556666666665542 222233344455666666666666666666666554 4556666666666666666666666
Q ss_pred HHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 167 VFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSI-LAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 167 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
.|++.++.. +-+...|..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 87 ~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 87 CYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 666665432 22455566666666666666554443 35555432 224445555555444444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-08 Score=86.30 Aligned_cols=167 Identities=11% Similarity=0.052 Sum_probs=102.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH-
Q 041936 142 RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFG- 220 (402)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~- 220 (402)
+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++... .|+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 4445556666667777777777777777775542 334566677777777777777777777766554 23333222
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP-NSVTYSHFIYGFCKD 299 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 299 (402)
.....+...++.++|...+++..... +.+...+..+...+...|++++|...|.++.+..... +...+..++..+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 22223455566666666676666654 4456666666777777777777777777776653221 244566666666667
Q ss_pred CCHHHHHHHHHHHH
Q 041936 300 GNFEEAKKFYRIMS 313 (402)
Q Consensus 300 ~~~~~a~~~~~~m~ 313 (402)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 77666666665543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.97 E-value=3.1e-06 Score=78.19 Aligned_cols=324 Identities=9% Similarity=-0.053 Sum_probs=183.2
Q ss_pred ccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHhhc-CC-CCCchHHHHH
Q 041936 39 KDKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEAN-YFNGISQYLEELKT-RP-DLQNERFHAH 115 (402)
Q Consensus 39 ~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~-~~-~~~~~~~~~~ 115 (402)
+..+..++..+-. ++.+.+.++|+..... .|+...|..-+....+.+ ..+....+|+.... .| .+.+..+|..
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 4445556666654 7899999999988764 368889999988888776 34667788887773 22 4557788877
Q ss_pred HHHHHH----hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH----------------------------------
Q 041936 116 SIILYG----QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI---------------------------------- 157 (402)
Q Consensus 116 li~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------- 157 (402)
.+..+. ..++.+.+..+|+.........-...|......-..
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 776544 346788899999998874211111222211111000
Q ss_pred ------------cCC---------HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 041936 158 ------------AKD---------YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNA 216 (402)
Q Consensus 158 ------------~~~---------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 216 (402)
.++ .+.+..+|++++... +.+...|...+.-+...|+++.|.++|++.... +.+.
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~ 246 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGM 246 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSS
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcH
Confidence 010 122334444443321 333444555555555666666666666666655 2222
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCC---------C---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMMERYG---------M---KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 284 (402)
..+.. |....+.++. ++.+.+.- . ......|...+....+.++.+.|..+|++. .. ...
T Consensus 247 ~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~ 317 (493)
T 2uy1_A 247 FLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGV 317 (493)
T ss_dssp HHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCC
T ss_pred HHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCC
Confidence 22211 1111111111 11111100 0 001234555555555667788888888888 22 122
Q ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041936 285 NSVTYSHFIYGFCK-DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLV 363 (402)
Q Consensus 285 ~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (402)
+...|......-.. .++.+.|..+|+...+... -+...+...+....+.|+.+.|..+|+.+. .....|...+
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~ 391 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMI 391 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 34444432222222 2368888888888877521 124445556666677888888888888762 2467777777
Q ss_pred HHHHcCCChHHHHHHHHHHHhc
Q 041936 364 TGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 364 ~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
..-...|+.+.+..++++..+.
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 7777788888888888877653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.96 E-value=5.4e-08 Score=84.40 Aligned_cols=227 Identities=11% Similarity=0.025 Sum_probs=139.6
Q ss_pred cCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 041936 88 ANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRV 167 (402)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 167 (402)
.|++++|.+++++..+.... . + +...+++++|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~--~-------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S--F-------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C--S-------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c--c-------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 46777888888776622110 0 0 11146677777776654 4467778888888888
Q ss_pred HHHchhhc---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHhccCCHHHHHHH
Q 041936 168 FIEFPKTY---GIKP-DLDTYNRVIKAFCESSDSSSAYSILAEMDRK----SIKP-NASSFGALVAGFYKEEKYEDVNKV 238 (402)
Q Consensus 168 ~~~~~~~~---~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 238 (402)
|.+..+.. +-.+ -..+|+.+...|...|++++|...|++..+. |-.. -..++..+..+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 87764321 1111 1346777888888888888888888876543 2111 13467777778877 888888888
Q ss_pred HHHHHHCCCC---C--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 041936 239 LQMMERYGMK---S--GVSMYNVRIHSLCKLRKCAEAKALLDEMLSK----GMKPN-SVTYSHFIYGFCKDGNFEEAKKF 308 (402)
Q Consensus 239 ~~~~~~~~~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 308 (402)
|++..+.... + ...++..+...|.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8877653210 1 1356777788888888888888888877653 11111 12555666677777888888888
Q ss_pred HHHHHhCCCC-CC---HHhHHHHHHHHHccCChHHHHH
Q 041936 309 YRIMSNSGLS-PN---SSVYFTMVYFMCKGGDYETALG 342 (402)
Q Consensus 309 ~~~m~~~~~~-~~---~~~~~~l~~~~~~~g~~~~a~~ 342 (402)
|++.. .... ++ ......++.++ ..|+.+.+..
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 88877 3211 11 12233444444 4566655555
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-07 Score=80.18 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=42.0
Q ss_pred HHHHHHcCCHHHHHHHHHHchhhcCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HhhHHHH
Q 041936 152 LLALTIAKDYKEVKRVFIEFPKTYGIKPDLD----TYNRVIKAFCESSDSSSAYSILAEMDRKSIK-PN----ASSFGAL 222 (402)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 222 (402)
+..+...|++++|..++++..+.....|+.. .+..+...+...+++++|...+++..+.... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4445555666666666655543222222211 1223344444445555555555555542111 11 1134555
Q ss_pred HHHHhccCCHHHHHHHHHHHH
Q 041936 223 VAGFYKEEKYEDVNKVLQMME 243 (402)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~ 243 (402)
..+|...|++++|...|+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.7e-08 Score=85.42 Aligned_cols=228 Identities=10% Similarity=0.041 Sum_probs=159.5
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAY 201 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 201 (402)
..|++++|.+++++..+.. +.. + +...+++++|...|++. ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 3577888888888776532 111 0 11147788888777654 44677889999999
Q ss_pred HHHHHHHhC----CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC---CC--ChhhHHHHHHHHHccCCHHHHH
Q 041936 202 SILAEMDRK----SIKP-NASSFGALVAGFYKEEKYEDVNKVLQMMERYGM---KS--GVSMYNVRIHSLCKLRKCAEAK 271 (402)
Q Consensus 202 ~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~ 271 (402)
..|.+..+. |-.. -..+|+.+..+|...|++++|...|++..+... .+ ...++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999887653 2111 145788899999999999999999998765310 12 24567888888988 9999999
Q ss_pred HHHHHHHHCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHhHHHHHHHHHccCChHHHH
Q 041936 272 ALLDEMLSKGMK---P--NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSPN-SSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 272 ~~~~~~~~~~~~---p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~ 341 (402)
..|++..+.... + ...++..+...|...|++++|+..|++..+. +..+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999988753111 1 1457888999999999999999999998763 22111 235667777888889999999
Q ss_pred HHHHHHHhCCC--CCC--HHHHHHHHHHHHcCCChHHHHHH
Q 041936 342 GFCKESIAKGW--VPN--FTTMKSLVTGLAGASKVSEAKEL 378 (402)
Q Consensus 342 ~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~a~~~ 378 (402)
..+++.. ... ... ......++.++ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999998 421 111 12344555555 56787766664
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.6e-08 Score=71.59 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041936 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGL 366 (402)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (402)
..+......|.+.|++++|++.|++.++... .+...|..+..+|.+.|++++|...+++.++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 4566777888888888888888888877532 256777888888888888888888888888765 55677888888888
Q ss_pred HcCCChHHHHHHHHHHHhcCCCChhhHHHHHhc
Q 041936 367 AGASKVSEAKELIGLVKEKFTKNVDTWNEIEAG 399 (402)
Q Consensus 367 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 399 (402)
...|++++|.+.|++..+..|.+...+..|-.+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888878887777766554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-06 Score=75.38 Aligned_cols=162 Identities=9% Similarity=0.021 Sum_probs=94.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 041936 223 VAGFYKEEKYEDVNKVLQMMERYGM-KSG----VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMK-PN----SVTYSHF 292 (402)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l 292 (402)
+..+...|++++|.+++++..+... .++ ...+..+...+...+++++|...+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4455666666666666666655321 111 112233455555666777777777776653222 12 2246667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHhC----CCCCC-HHHHHH
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNS-----GLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIAK----GWVPN-FTTMKS 361 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 361 (402)
...|...|++++|...++++.+. +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777777777777777766631 11111 235666777777777777777777766542 21111 456677
Q ss_pred HHHHHHcCCC-hHHHHHHHHHHHh
Q 041936 362 LVTGLAGASK-VSEAKELIGLVKE 384 (402)
Q Consensus 362 l~~~~~~~g~-~~~a~~~~~~~~~ 384 (402)
+..++.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7777777774 5777777776654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-07 Score=74.72 Aligned_cols=122 Identities=15% Similarity=0.051 Sum_probs=54.8
Q ss_pred HHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 041936 152 LLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK 231 (402)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 231 (402)
...+...|++++|...|++.. .|+...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|+
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 334444444444444444432 2234444444444444444444444444444332 2233344444444444444
Q ss_pred HHHHHHHHHHHHHCCCCC----------------ChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 232 YEDVNKVLQMMERYGMKS----------------GVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~----------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
+++|.+.|++..+.. +. ....+..+..++.+.|++++|...|++..+.
T Consensus 87 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 444444444444322 11 1134455555555555555555555555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.7e-07 Score=75.02 Aligned_cols=130 Identities=11% Similarity=0.024 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 041936 182 DTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSL 261 (402)
Q Consensus 182 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (402)
..+..+...+...|++++|...|++.. .|+...+..+..++...|++++|.+.|++..+.. +.+...|..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345567778888999999999998773 5678899999999999999999999999988765 55677888899999
Q ss_pred HccCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041936 262 CKLRKCAEAKALLDEMLSKGMK--------------P-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG 316 (402)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 316 (402)
...|++++|...|++..+.... | ....+..+..+|...|++++|...|+...+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999885322 1 12677888889999999999999999988754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-06 Score=75.49 Aligned_cols=254 Identities=10% Similarity=0.004 Sum_probs=129.8
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc-C-Ch
Q 041936 121 GQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK-DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES-S-DS 197 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-~-~~ 197 (402)
.+.+..++|+++++.+...+ +-+..+|+.--.++...| .+++++.+++.+.+.. +-+..+|+--...+... + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCCh
Confidence 33444567888888777766 566677777766676677 4777777777776542 44555566555555554 5 66
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH--------HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC---
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYE--------DVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRK--- 266 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--- 266 (402)
++++++++++.+.. +-|..+|+.-..++.+.|.++ ++++.++++.+.. +-+...|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 77777777777653 335556655554444444444 5555555555544 3455555555555555443
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH
Q 041936 267 ----CAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEE--AKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETA 340 (402)
Q Consensus 267 ----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~--a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 340 (402)
++++++.++++...... |...|+-+-..+.+.|.... -..++ ...|...+. .....
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~~--------------~~~~~ 281 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLNP--------------DIETV 281 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC------------------------
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccc---ccccccccc--------------cchhH
Confidence 34455555554443222 34444433333333332200 00000 000000000 01112
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc-CCCChhhHHHHH
Q 041936 341 LGFCKESIAKG-----WVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEK-FTKNVDTWNEIE 397 (402)
Q Consensus 341 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~ 397 (402)
..+..++...+ -.+++..+..++..|.+.|+.++|.++++.+.++ .|....-|+-..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 282 EAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp ----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 22222222111 1356667777777777777777788887777654 344444554433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.9e-06 Score=72.79 Aligned_cols=184 Identities=14% Similarity=-0.018 Sum_probs=139.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 041936 78 FSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN-MTEHAVRTFKEMDEHKLRHSVGAFNALLLALT 156 (402)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (402)
++.+-......+..++|+++++.+.. -.+.....++.--.++...| .+++++..++.+...+ +-+..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~-~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVR-MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH-hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33333344445566789999999983 34556666666666677788 5999999999999887 788899998888888
Q ss_pred Hc-C-CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 041936 157 IA-K-DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSS--------SAYSILAEMDRKSIKPNASSFGALVAGF 226 (402)
Q Consensus 157 ~~-~-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 226 (402)
.. + ++++++.+++.+.+.. +-+..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 77 7 8899999999997543 456677776655555555666 8999999999875 44788899888888
Q ss_pred hccCC-------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 041936 227 YKEEK-------YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKC 267 (402)
Q Consensus 227 ~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 267 (402)
.+.++ ++++++.+++..... +-|...|+-+-..+.+.|+.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 88876 688888888888765 56778888777666666553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.2e-07 Score=77.55 Aligned_cols=163 Identities=9% Similarity=0.008 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHchhhcC--CCCC--HHHH
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSV------GAFNALLLALTIAKDYKEVKRVFIEFPKTYG--IKPD--LDTY 184 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~~~~ 184 (402)
..+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|+..+++..+... ..+. ..+|
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3444455555555555555554443211 11 1223344445555566666665555432110 0111 2355
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh---C-CCCC--CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCC-Chhh
Q 041936 185 NRVIKAFCESSDSSSAYSILAEMDR---K-SIKP--NASSFGALVAGFYKEEKYEDVNKVLQMMERYG----MKS-GVSM 253 (402)
Q Consensus 185 ~~li~~~~~~~~~~~a~~~~~~~~~---~-g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~ 253 (402)
+.+...|...|++++|...|++..+ . +..+ ...++..+..+|...|++++|...+++..+.. ... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 5555666666666666666655541 1 1011 11355555666666666666666665544321 000 1345
Q ss_pred HHHHHHHHHccCCHHHH-HHHHHHHH
Q 041936 254 YNVRIHSLCKLRKCAEA-KALLDEML 278 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a-~~~~~~~~ 278 (402)
|..+..+|.+.|++++| ...+++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 55566666666666666 55455443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-06 Score=74.57 Aligned_cols=166 Identities=11% Similarity=0.021 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC---CCC--hh
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEMDRKSIKPN-----ASSFGALVAGFYKEEKYEDVNKVLQMMERYGM---KSG--VS 252 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 252 (402)
.+...+..+...|++++|.+.+++..+.....+ ...+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455566667777777777766665422111 01233344555666777777777776654321 111 33
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CH
Q 041936 253 MYNVRIHSLCKLRKCAEAKALLDEMLS---K-GMKP--NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSP-NS 321 (402)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 321 (402)
+|+.+...|...|++++|...|++..+ . +..+ ...++..+...|...|++++|...+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 666777777777777777777777652 1 1111 1146667777777777777777777766542 1111 14
Q ss_pred HhHHHHHHHHHccCChHHH-HHHHHHHH
Q 041936 322 SVYFTMVYFMCKGGDYETA-LGFCKESI 348 (402)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 348 (402)
.+|..+...|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5667777777777777777 66666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-07 Score=68.65 Aligned_cols=96 Identities=10% Similarity=0.001 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAF 191 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 191 (402)
.+......|.+.|++++|++.|++..+.+ +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHH
Confidence 34444445555555555555555555443 4445555555555555555555555555554331 22344455555555
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 041936 192 CESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~ 210 (402)
...|++++|.+.|++.++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 5555555555555555543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.9e-07 Score=70.64 Aligned_cols=126 Identities=11% Similarity=-0.033 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHH
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFC 192 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 192 (402)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH
Confidence 4445555666666666666666665543 4455566666666666666666666666654432 334455555666666
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHH--HHHHHHhccCCHHHHHHHHHHH
Q 041936 193 ESSDSSSAYSILAEMDRKSIKPNASSFG--ALVAGFYKEEKYEDVNKVLQMM 242 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~ 242 (402)
..|++++|...|++..+.. +.+...+. ..+..+...|++++|.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666655542 11233332 2222244555555555555543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-07 Score=71.80 Aligned_cols=130 Identities=8% Similarity=0.038 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
..+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 46777888889999999999999998743 44567788888999999999999999999998875 66788999999999
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHHh
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKPDLDTYNR--VIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~--li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
...|++++|...|++..+.. +.+...+.. ....+...|++++|.+.+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999987653 334444533 44447788999999999886643
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.74 E-value=5e-07 Score=69.01 Aligned_cols=100 Identities=9% Similarity=-0.080 Sum_probs=66.7
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH
Q 041936 108 QNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV 187 (402)
Q Consensus 108 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 187 (402)
.+...+..+...+.+.|++++|+..|++..+.+ |.+...|..+..+|...|++++|+..|++..+.. +.+...|..+
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~l 110 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHH
Confidence 344555566666777777777777777776655 5566677777777777777777777777765442 3345566667
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 041936 188 IKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
..+|...|++++|...|++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777776664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5.7e-07 Score=65.76 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAF 191 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 191 (402)
.+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+..++..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHH
Confidence 34444445555555555555555554433 3344445555555555555555555555543321 22344444555555
Q ss_pred HhcCChhHHHHHHHHHHh
Q 041936 192 CESSDSSSAYSILAEMDR 209 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~ 209 (402)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.8e-07 Score=66.71 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+...+..+...+...|++++|.+.+++.... .+.+...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3445555555666666666666666665522 33344555555555666666666666666655543 344555555566
Q ss_pred HHHHcCCHHHHHHHHHHchh
Q 041936 154 ALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~ 173 (402)
++...|++++|...|++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666655543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-07 Score=79.42 Aligned_cols=193 Identities=6% Similarity=-0.079 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..+++..+.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 4455566667777888888888888777654 4567777777778888888888888887775431 335567777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH
Q 041936 190 AFCESSDSSSAYSILAEMDRKSIKPNA-SSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCA 268 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 268 (402)
++...|++++|...|++..+.. |+. ..+...+....+. .++ ..+........+.+......+.. + ..|+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 7888888888888887766532 111 1111111111111 111 11122222333444444333322 2 257778
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 041936 269 EAKALLDEMLSKGMKPNSV-TYSHFIYGFCKD-GNFEEAKKFYRIMSNS 315 (402)
Q Consensus 269 ~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-~~~~~a~~~~~~m~~~ 315 (402)
+|.+.++...+. .|+.. ....+...+.+. +.+++|.++|....+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888887777655 44433 333333334443 5677788888776653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.71 E-value=6.5e-08 Score=82.68 Aligned_cols=97 Identities=10% Similarity=-0.009 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 041936 145 VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVA 224 (402)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 224 (402)
...+..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444555555555555555555555554331 2244445555555555555555555555555432 223444455555
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 041936 225 GFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~ 244 (402)
++...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-07 Score=75.31 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=52.6
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh---cCCC-CCHHHHHHHHHHHHhcCCh
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT---YGIK-PDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-p~~~~~~~li~~~~~~~~~ 197 (402)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..+. .+.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1123444555555555555555555555554321 0111 1123344455555555555
Q ss_pred hHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041936 198 SSAYSILAEMDRK----SIKP--NASSFGALVAGFYKEEKYEDVNKVLQMME 243 (402)
Q Consensus 198 ~~a~~~~~~~~~~----g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (402)
++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5555555544332 1011 12234444555555555555555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.3e-07 Score=66.92 Aligned_cols=118 Identities=8% Similarity=-0.020 Sum_probs=70.3
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHH
Q 041936 107 LQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNR 186 (402)
Q Consensus 107 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 186 (402)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHH
Confidence 3344555666666677777777777777766554 4456666666666767777777777776665432 334556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 041936 187 VIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYK 228 (402)
Q Consensus 187 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 228 (402)
+...+...|++++|.+.|++..+.. +.+...+..+..++..
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 6666666666666666666665542 1233344444444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.3e-07 Score=73.07 Aligned_cols=119 Identities=8% Similarity=0.123 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH-HHhcCCh--hH
Q 041936 123 ANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA-FCESSDS--SS 199 (402)
Q Consensus 123 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~--~~ 199 (402)
.|++++|+..++...+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+... +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 344444444444444333 3344444445555555555555555555443321 2233344444444 4444544 55
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 200 AYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 200 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
|...++++.+.. +.+...+..+..++...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 555555544432 223344444445555555555555555554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-07 Score=75.49 Aligned_cols=156 Identities=9% Similarity=-0.054 Sum_probs=76.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHccCCH
Q 041936 193 ESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY----GM-KSGVSMYNVRIHSLCKLRKC 267 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~ 267 (402)
..|++++|.+.++.+... ......++..+...+...|++++|...+++.... +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644444331 1223455666666666666666666666655441 11 11234455555556666666
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHccCC
Q 041936 268 AEAKALLDEMLSK----GMKP--NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSP-NSSVYFTMVYFMCKGGD 336 (402)
Q Consensus 268 ~~a~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~ 336 (402)
++|...+++..+. +..| ....+..+...+...|++++|...+++.... +... -..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666655432 1111 1223455555555566666666665555422 1000 01223444555555555
Q ss_pred hHHHHHHHHHHHh
Q 041936 337 YETALGFCKESIA 349 (402)
Q Consensus 337 ~~~a~~~~~~~~~ 349 (402)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=4.7e-07 Score=66.85 Aligned_cols=116 Identities=12% Similarity=-0.071 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHH
Confidence 334444445555555555555555554433 3344455555555555555555555555554321 2234444455555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 191 FCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
+...|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 555555555555555544432 123334444444444333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.3e-07 Score=75.63 Aligned_cols=136 Identities=7% Similarity=-0.086 Sum_probs=68.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHcc
Q 041936 257 RIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN--SSVYFTMVYFMCKG 334 (402)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~ 334 (402)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 4445555566666666665555432 322233334445556666666666665333321 110 12445555566666
Q ss_pred CChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 335 GDYETALGFCKESIAKGWVPN--FTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
|++++|+..|++.......|. .........++.+.|+.++|..+|+++....|. ...+..|
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 666666666666553221132 223444455556666666666666666665444 4444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.68 E-value=6.2e-07 Score=68.48 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
.+..+...+.+.|++++|...|++...... -+...|..+..+|...|++++|...|+++.+.. +.+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 455555566666666666666666665422 135555666666666666666666666666553 334555666666666
Q ss_pred cCCChHHHHHHHHHHHhc
Q 041936 368 GASKVSEAKELIGLVKEK 385 (402)
Q Consensus 368 ~~g~~~~a~~~~~~~~~~ 385 (402)
+.|++++|.+.|++..+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.68 E-value=6e-07 Score=65.62 Aligned_cols=96 Identities=17% Similarity=0.314 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 252 SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|..+++++.+... .+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 334444444455555555555555544431 11333444444444444555555554444444311 1233444444444
Q ss_pred HccCChHHHHHHHHHHHh
Q 041936 332 CKGGDYETALGFCKESIA 349 (402)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~ 349 (402)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 444444444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-07 Score=72.55 Aligned_cols=121 Identities=9% Similarity=0.007 Sum_probs=86.2
Q ss_pred HhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHH-HHHcCCH--H
Q 041936 86 SEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLA-LTIAKDY--K 162 (402)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 162 (402)
...|++++|...++..... .+.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4467777888777776632 34556677777788888888888888888877655 5567777777777 6677887 8
Q ss_pred HHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 163 EVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 163 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
+|...+++..+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888876542 334667777888888888888888888888775
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-07 Score=71.59 Aligned_cols=99 Identities=8% Similarity=-0.022 Sum_probs=58.8
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041936 250 GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVY 329 (402)
Q Consensus 250 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 329 (402)
+...+..+...+.+.|++++|...|++....... +...|..+..+|...|++++|...|++...... .+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 3444555556666666666666666666654222 455566666666666666666666666665421 13455556666
Q ss_pred HHHccCChHHHHHHHHHHHhC
Q 041936 330 FMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~ 350 (402)
+|...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-05 Score=74.52 Aligned_cols=198 Identities=6% Similarity=-0.026 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC-HHHHHHHHHHhHhC-CC-CCCHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANM-TEHAVRTFKEMDEH-KL-RHSVGAFNALL 152 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~ 152 (402)
..|...+..+-. |+++.+..+|+..... .|+..+|...+....+.+. .+....+|+..... |. +.+...|...+
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 344444444433 8899999999998853 4588899888887777763 45677788877653 42 45778888888
Q ss_pred HHHH----HcCCHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHHh-------------cCChhHHHHHHHHHHhCCCC
Q 041936 153 LALT----IAKDYKEVKRVFIEFPKTYGIKPD--LDTYNRVIKAFCE-------------SSDSSSAYSILAEMDRKSIK 213 (402)
Q Consensus 153 ~~~~----~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~-------------~~~~~~a~~~~~~~~~~g~~ 213 (402)
..+. ..++.+.+..+|+..+. +++. ...|......-.. .+.+..|..+++++...--.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~---~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQ---TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHT---SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHh---ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 7654 34678889999999874 2322 1223332221111 11223344445444321000
Q ss_pred CCHhhHHHHHHHHhccC--C-----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 214 PNASSFGALVAGFYKEE--K-----YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 214 ~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
.+...|...+.--...+ - .+.+..+|+++.... +.+...|...+..+.+.|++++|..+|++....
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 13335555554432221 1 345778899888754 556788888899999999999999999999987
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-06 Score=73.47 Aligned_cols=51 Identities=6% Similarity=-0.092 Sum_probs=20.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFI 169 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 169 (402)
...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~ 159 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVK 159 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333444444444444444443322 211122333334444444444444444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.9e-05 Score=71.70 Aligned_cols=95 Identities=18% Similarity=0.135 Sum_probs=40.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHC--CC---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC--H
Q 041936 218 SFGALVAGFYKEEKYEDVNKVLQMMERY--GM---KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK----GMKPN--S 286 (402)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~ 286 (402)
++..+...+...|++++|..+++.+... +. +....++..++..|...|++++|..++++.... +..+. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 3444455555555555555555544321 00 011234444455555555555555555544321 11111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041936 287 VTYSHFIYGFCKDGNFEEAKKFYRIM 312 (402)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~m 312 (402)
..+..+...+...|++++|...|.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23333444444455555555444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=3e-07 Score=70.16 Aligned_cols=98 Identities=10% Similarity=-0.094 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 041936 109 NERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVI 188 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 188 (402)
+...+..+...+.+.|++++|+..|+.....+ +.+...|..+..+|...|++++|+..|++..... +.+...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHH
Confidence 33444445555555666666666666555543 4455555555555556666666666665554332 22344455555
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 041936 189 KAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 189 ~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.+|...|++++|.+.|++..+
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=9.2e-07 Score=65.23 Aligned_cols=120 Identities=10% Similarity=0.029 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+...+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 4557788888899999999999999998743 34567788888899999999999999999988765 567888999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCCh
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDS 197 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 197 (402)
++...|++++|...|++..+.. +.+...+..+...+...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999987653 34667777788887777664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.6e-07 Score=65.35 Aligned_cols=97 Identities=14% Similarity=0.097 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
.+..+...+...|++++|...|++..+... .+...|..+..+|...|++++|...+++.++.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 344455555555555555555555554321 134555555555555666666666665555543 334555555555666
Q ss_pred cCCChHHHHHHHHHHHhcC
Q 041936 368 GASKVSEAKELIGLVKEKF 386 (402)
Q Consensus 368 ~~g~~~~a~~~~~~~~~~~ 386 (402)
..|++++|.+.|++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 6666666666666555543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.5e-05 Score=65.28 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=17.6
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHch
Q 041936 127 EHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK--DYKEVKRVFIEFP 172 (402)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 172 (402)
++++.+++.+...+ +-+..+|+.-..++...+ .+++++.+++.+.
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l 137 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFL 137 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHH
Confidence 33444444443332 333444444333333333 2344444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=2e-06 Score=62.10 Aligned_cols=107 Identities=15% Similarity=0.023 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
.+..+...+...|++++|...+++...... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 344444555555555555555555544321 134445555555555555555555555555443 334455555555555
Q ss_pred cCCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 368 GASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 368 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
..|++++|.+.+++..+..|.+...+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 55566666665555555544444444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=76.68 Aligned_cols=124 Identities=11% Similarity=-0.018 Sum_probs=62.2
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--------------hhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 215 NASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSG--------------VSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
+...+..+...+.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666677777777777777777777766531111 244444444555555555555555554443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH
Q 041936 281 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETA 340 (402)
Q Consensus 281 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 340 (402)
.. .+...|..+..+|...|++++|...|++..+... -+...+..+..++...|+.+++
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 21 1334444444444455555555555544444311 1233444444444444444444
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=8.3e-08 Score=77.32 Aligned_cols=59 Identities=15% Similarity=0.002 Sum_probs=23.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 219 FGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
+..+..++...|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3333333444444444444444333332 2233333334444444444444444444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-06 Score=76.21 Aligned_cols=95 Identities=13% Similarity=0.007 Sum_probs=58.6
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041936 217 SSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGF 296 (402)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 296 (402)
..|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.... +...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 456666666666666666666666666654 345566666666667777777777777766665221 445666666666
Q ss_pred HhcCCHHHH-HHHHHHHH
Q 041936 297 CKDGNFEEA-KKFYRIMS 313 (402)
Q Consensus 297 ~~~~~~~~a-~~~~~~m~ 313 (402)
...|+.++| ...|..|.
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666 33444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=2.2e-07 Score=74.83 Aligned_cols=96 Identities=13% Similarity=-0.092 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 252 SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
..|..+..+|.+.|++++|...+++..+... .+...+..+..+|...|++++|...|++..+... -+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Confidence 4555666666667777777777776665421 2455666666667777777777777776665421 1345555565566
Q ss_pred HccCChHHHH-HHHHHHHh
Q 041936 332 CKGGDYETAL-GFCKESIA 349 (402)
Q Consensus 332 ~~~g~~~~a~-~~~~~~~~ 349 (402)
...++.+++. ..+..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5555555555 34444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=6.3e-06 Score=59.36 Aligned_cols=96 Identities=11% Similarity=-0.074 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAF 191 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 191 (402)
.+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 34444555555666666666666655443 3445555555556666666666666665554431 22344555555555
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 041936 192 CESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 192 ~~~~~~~~a~~~~~~~~~~ 210 (402)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5566666666666555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-06 Score=65.64 Aligned_cols=97 Identities=11% Similarity=-0.010 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 252 SMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
..+..+...+.+.|++++|...|++....... +...|..+..+|...|++++|...|++...... .+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 34444555566666666666666666654222 455566666666666666666666666665432 1344555566666
Q ss_pred HccCChHHHHHHHHHHHhC
Q 041936 332 CKGGDYETALGFCKESIAK 350 (402)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~ 350 (402)
...|++++|...+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.9e-06 Score=63.47 Aligned_cols=106 Identities=13% Similarity=-0.003 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041936 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN----SSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSL 362 (402)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (402)
..+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++..+.. +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 34444444444555555555555554442 222 3444444445555555555555555554432 2234444555
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcCCCChhhHHH
Q 041936 363 VTGLAGASKVSEAKELIGLVKEKFTKNVDTWNE 395 (402)
Q Consensus 363 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 395 (402)
..++...|++++|.+.|++..+..+.+...+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 555555555555555555555544444444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-06 Score=65.61 Aligned_cols=96 Identities=10% Similarity=-0.114 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
..+..+...+.+.|++++|+..|+.....+ +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHH
Confidence 334444455555666666666666555544 4455555555556666666666666665554432 2234445555555
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 041936 191 FCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~ 209 (402)
+...|++++|.+.|++..+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555666666655555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.4e-06 Score=61.45 Aligned_cols=94 Identities=15% Similarity=0.044 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHH
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFC 192 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 192 (402)
+......+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++.++.. +.+...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 4444445555566666666666555543 4445555555555666666666666655554432 223445555555555
Q ss_pred hcCChhHHHHHHHHHHh
Q 041936 193 ESSDSSSAYSILAEMDR 209 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~ 209 (402)
..|++++|.+.|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-06 Score=61.41 Aligned_cols=98 Identities=15% Similarity=0.019 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVP--NFTTMKSLVTG 365 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 365 (402)
.+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 344444555555555555555555554321 134445555555555566666666555555542 22 35555555555
Q ss_pred HHcC-CChHHHHHHHHHHHhcCC
Q 041936 366 LAGA-SKVSEAKELIGLVKEKFT 387 (402)
Q Consensus 366 ~~~~-g~~~~a~~~~~~~~~~~~ 387 (402)
+.+. |++++|.+.++.+.+..|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 6666 666666666666555433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-06 Score=66.78 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=76.5
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041936 250 GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVY 329 (402)
Q Consensus 250 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 329 (402)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|+..|++.++... -+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4556777778888888888888888888876322 567778888888888888888888888887532 24677788888
Q ss_pred HHHccCChHHHHHHHHHHHhC
Q 041936 330 FMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~ 350 (402)
+|...|++++|...|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=9.7e-06 Score=73.64 Aligned_cols=166 Identities=11% Similarity=0.019 Sum_probs=112.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCH----hhHHHHHHHHhccCCHHHHHHHHHHHHH----CCCCC-Chhh
Q 041936 184 YNRVIKAFCESSDSSSAYSILAEMDRKS-IKPNA----SSFGALVAGFYKEEKYEDVNKVLQMMER----YGMKS-GVSM 253 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~~~~~~~~~~g-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~ 253 (402)
+..+...|...|++++|.+.+..+...- ..++. .+.+.+...+...|+++++..+++.... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666666777777776666554320 01111 2234444455567888888888877653 22222 2456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HH
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSK--GM--KP-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSPN--SS 322 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~--~~ 322 (402)
+..+...|...|++++|..+++++... +. .+ ...++..++..|...|++++|..+++..... +..+. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 788899999999999999999988653 11 12 2457888999999999999999999887643 11111 34
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 323 VYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
.+..+...+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566777788889999999988877654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.3e-06 Score=61.08 Aligned_cols=97 Identities=11% Similarity=-0.027 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCC--CHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP--DLDTYNRVI 188 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li 188 (402)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHH
Confidence 344445555566666666666666655543 3445555556666666666666666666554331 22 345555555
Q ss_pred HHHHhc-CChhHHHHHHHHHHhC
Q 041936 189 KAFCES-SDSSSAYSILAEMDRK 210 (402)
Q Consensus 189 ~~~~~~-~~~~~a~~~~~~~~~~ 210 (402)
..+... |++++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555566 6666666666555544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=0.0002 Score=61.84 Aligned_cols=234 Identities=8% Similarity=-0.025 Sum_probs=152.1
Q ss_pred hcCCHH-HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 122 QANMTE-HAVRTFKEMDEHKLRHSVGAFNALLLALTIAKD----------YKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 122 ~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
+.|.++ +|+++++.+...+ +-+..+|+.--.++...+. +++++.+++.+.... +-+..+|+--.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 444443 5677777776665 4555556544333333332 578888888887653 4466677766666
Q ss_pred HHhcC--ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc---
Q 041936 191 FCESS--DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK-YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKL--- 264 (402)
Q Consensus 191 ~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 264 (402)
+...+ .+++++++++.+.+.. +-|...|+.-..++...|. ++++++.++.+.+.. +-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 66666 4788999999888875 4477777777777777777 588888888888876 56777777766655544
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHH
Q 041936 265 -----------RKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKD-----------GNFEEAKKFYRIMSNSGLSPNSS 322 (402)
Q Consensus 265 -----------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~ 322 (402)
+.++++++.++......+. |...|+-+-..+.+. +.++++++.++++.+. .||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-
Confidence 4577888888888876433 666666444444333 3577889999988874 4553
Q ss_pred hHHHHH-----HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041936 323 VYFTMV-----YFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTG 365 (402)
Q Consensus 323 ~~~~l~-----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (402)
.|..+. ......|..+++..++.++++.+ +....-|.-+...
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~ 318 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHH
Confidence 233221 22224677888899999998765 4444445444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.9e-06 Score=63.36 Aligned_cols=100 Identities=15% Similarity=0.056 Sum_probs=61.3
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 041936 249 SGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMV 328 (402)
Q Consensus 249 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 328 (402)
.+...+..+...+...|++++|...|++....... +...|..+..++...|++++|...+++..+... .+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 34555666666666666777777666666654322 455666666666666666666666666665432 1355566666
Q ss_pred HHHHccCChHHHHHHHHHHHhC
Q 041936 329 YFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.++...|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666666543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.3e-06 Score=62.36 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=25.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 219 FGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2233344444444444444444444444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.2e-06 Score=65.58 Aligned_cols=99 Identities=13% Similarity=0.055 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
+...+..+...+.+.|++++|.+.|++.... .+.+...+..+..+|...|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI-APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445666666666777777777777666632 33455666666667777777777777777766654 455666666777
Q ss_pred HHHHcCCHHHHHHHHHHchhh
Q 041936 154 ALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~ 174 (402)
+|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777666544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.3e-06 Score=60.84 Aligned_cols=96 Identities=14% Similarity=0.017 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcC-CCCC----HHHHHHH
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYG-IKPD----LDTYNRV 187 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p~----~~~~~~l 187 (402)
+..+...+.+.|++++|+..|++..+.. +.+...|+.+..+|...|++++|++.+++.++... ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3445555666666666666666665544 44555666666666666666666666665543210 0111 1234444
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 041936 188 IKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~ 209 (402)
..++...|++++|++.|++.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.5e-06 Score=62.90 Aligned_cols=99 Identities=8% Similarity=0.028 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCC-CCC----HHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGI-KPD----LDTYN 185 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~----~~~~~ 185 (402)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+...- .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344455556666666666666666666544 445566666666666666666666666665433100 111 44555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 186 RVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 186 ~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
.+...+...|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5666666666666666666666553
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.44 E-value=9.7e-07 Score=64.20 Aligned_cols=88 Identities=6% Similarity=-0.099 Sum_probs=64.5
Q ss_pred hcCCcchHHHHHHHhhcCC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 041936 87 EANYFNGISQYLEELKTRP--DLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEV 164 (402)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 164 (402)
..|++++|+..|++....+ .+.+...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3577888888888887543 34556677778888888888888888888887765 56677888888888888888888
Q ss_pred HHHHHHchhhc
Q 041936 165 KRVFIEFPKTY 175 (402)
Q Consensus 165 ~~~~~~~~~~~ 175 (402)
+..+++..+..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88888876653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.43 E-value=8e-06 Score=60.89 Aligned_cols=96 Identities=5% Similarity=-0.169 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
...+..+...+...|++++|+..|+...+.. +.+...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHHH
Confidence 3344444444455555555555555444433 3334444444445555555555555554443321 223344444444
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 041936 190 AFCESSDSSSAYSILAEMD 208 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~ 208 (402)
++...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-05 Score=59.60 Aligned_cols=94 Identities=9% Similarity=-0.098 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHS----VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRV 187 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 187 (402)
.+..+...+...|++++|.+.|++..+.. |+ ...+..+..+|...|++++|...+++..+.. +.+...+..+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ 105 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHHHH
Confidence 33334444444444444444444444332 22 3334444444444444444444444443321 1223334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 041936 188 IKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 188 i~~~~~~~~~~~a~~~~~~~~~ 209 (402)
..++...|++++|.+.|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-05 Score=58.58 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=49.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHH
Q 041936 256 VRIHSLCKLRKCAEAKALLDEMLSKGMKPNS---VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPN--SSVYFTMVYF 330 (402)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~ 330 (402)
.+...+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...|++..+...... ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3444555566666666666665554211 11 3445555556666666666666666555321100 3344555555
Q ss_pred HHccCChHHHHHHHHHHHhC
Q 041936 331 MCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~~ 350 (402)
+...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55566666666666555553
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.8e-06 Score=61.83 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC--CCC----HHHH
Q 041936 75 RLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKL--RHS----VGAF 148 (402)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~ 148 (402)
...+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...++...+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 346777888899999999999999998843 345677888888999999999999999999876531 122 7788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
..+..++...|++++|...|++..+. .|+......+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 88999999999999999999998764 4566555554443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=7.5e-06 Score=59.84 Aligned_cols=93 Identities=9% Similarity=-0.023 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES 194 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 194 (402)
.+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 34445566666666666666666554 4456666666666666666666666666665432 22445556666666666
Q ss_pred CChhHHHHHHHHHHhC
Q 041936 195 SDSSSAYSILAEMDRK 210 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~ 210 (402)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=5.2e-06 Score=60.68 Aligned_cols=93 Identities=8% Similarity=-0.031 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 041936 291 HFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGAS 370 (402)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (402)
.+...+.+.|++++|...|++..+... -+...|..+..++...|++++|...+++.++.. +.+...+..+..++.+.|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 344445555555555555555554321 134445555555555555555555555555543 334445555555555555
Q ss_pred ChHHHHHHHHHHHhc
Q 041936 371 KVSEAKELIGLVKEK 385 (402)
Q Consensus 371 ~~~~a~~~~~~~~~~ 385 (402)
++++|...+++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.2e-06 Score=64.15 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHhC----CC-CCCHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNS----GLSP-NSSVYFTMVYFMCKGGDYETALGFCKESIAK----GW-VPNFT 357 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 357 (402)
++..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|...+++..+. +. .....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444555555555555555555554432 0000 1234455555666666666666666655432 10 11134
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 358 TMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 358 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
.+..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455666667777777777777776655
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.25 E-value=7e-06 Score=62.88 Aligned_cols=131 Identities=7% Similarity=-0.107 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLR-HS----VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LD 182 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 182 (402)
.+..+...+...|++++|+..+++..+.... .+ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555666666666666554432100 11 124555555666666666666666554322100011 23
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEMDRK----SIK-PNASSFGALVAGFYKEEKYEDVNKVLQMM 242 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (402)
.+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444555555555555555555544322 100 01223344444444445555555444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.8e-05 Score=55.02 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=42.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC---HHHHHHHHHH
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSV---GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD---LDTYNRVIKA 190 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~ 190 (402)
...+...|++++|...|+...+.. +.+. ..+..+..++...|++++|...|++..+.. +.+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 334445555555555555554432 1222 344445555555555555555555554331 111 3334444555
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 041936 191 FCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~ 209 (402)
+...|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.20 E-value=3e-06 Score=61.53 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHH
Q 041936 264 LRKCAEAKALLDEMLSKGMK-P-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 341 (402)
.|++++|+..|++..+.+.. | +...+..+..+|...|++++|...|++..+.... +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 46666677777766654311 2 2345666666666667777777777666664322 3555666666666667777777
Q ss_pred HHHHHHHhC
Q 041936 342 GFCKESIAK 350 (402)
Q Consensus 342 ~~~~~~~~~ 350 (402)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.8e-05 Score=61.07 Aligned_cols=99 Identities=14% Similarity=0.077 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041936 251 VSMYNVRIHSLCKLRKCAEAKALLDEMLSK--------GM--------KP-NSVTYSHFIYGFCKDGNFEEAKKFYRIMS 313 (402)
Q Consensus 251 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~--------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 313 (402)
...+......+.+.|++++|...|++.... .. .| +...|..+..+|.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666667777778888888777776653 00 01 22455566666666666666666666666
Q ss_pred hCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 314 NSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 314 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
+... .+...|..+..+|...|++++|...+++.++.
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5421 23556666666666666666666666666654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.16 E-value=5.1e-06 Score=76.49 Aligned_cols=117 Identities=12% Similarity=0.001 Sum_probs=63.4
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhH
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSS 199 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 199 (402)
+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 445566666666666665543 4445666666666666666666666666664431 3344556666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHH--HhccCCHHHHHHHHH
Q 041936 200 AYSILAEMDRKSIKPNASSFGALVAG--FYKEEKYEDVNKVLQ 240 (402)
Q Consensus 200 a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 240 (402)
|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666665542 1123334444433 555566666666665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.13 E-value=4.8e-05 Score=69.67 Aligned_cols=121 Identities=11% Similarity=0.006 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 041936 110 ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHS---------------VGAFNALLLALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 110 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 174 (402)
...+......+.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..+++.++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3445566666777777777777777766532 122 344444444555555555555555444332
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHH
Q 041936 175 YGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYED 234 (402)
Q Consensus 175 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 234 (402)
. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.++
T Consensus 347 ~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 347 D--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp S--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred C--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 1 2233444444444444455555555444444432 1123344444444444444433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-05 Score=74.47 Aligned_cols=119 Identities=9% Similarity=0.055 Sum_probs=89.9
Q ss_pred HHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 041936 83 NKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYK 162 (402)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 162 (402)
..+.+.|++++|.+.+++.... .+.+...+..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3456778899999999888743 45567788888889999999999999999988876 667888888999999999999
Q ss_pred HHHHHHHHchhhcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 041936 163 EVKRVFIEFPKTYGIKPDLDTYNRVIKA--FCESSDSSSAYSILA 205 (402)
Q Consensus 163 ~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~~~~~~a~~~~~ 205 (402)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999887653 2233445555555 778899999999888
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.11 E-value=5.6e-05 Score=69.18 Aligned_cols=122 Identities=5% Similarity=-0.054 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041936 145 VGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD-------------LDTYNRVIKAFCESSDSSSAYSILAEMDRKS 211 (402)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 211 (402)
...|..+...+.+.|++++|+..|++.++...-.++ ...|..+..+|.+.|++++|+..+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 456677777888888888888888877653211111 2344444444444444444444444444432
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH
Q 041936 212 IKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCA 268 (402)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 268 (402)
+.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 2233444444444444444444444444444432 222333334444444444333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00022 Score=67.00 Aligned_cols=131 Identities=13% Similarity=0.074 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC----------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC--
Q 041936 198 SSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK----------YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLR-- 265 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-- 265 (402)
++|++.++++.... +-+..+|+.--.++...|+ ++++++.++.+.+.. +.+..+|+.-..++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 45566666665543 2234445444444444444 556666666665544 345555555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041936 266 KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG-NFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMC 332 (402)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 332 (402)
+++++++.++++.+.... +...|+.-.-.+.+.| .++++++.++++++.... |...|+.....+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~ 189 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 189 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHH
Confidence 446666666666655333 4555555555555555 555556655555554332 4445544444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.08 E-value=4.8e-05 Score=67.49 Aligned_cols=97 Identities=9% Similarity=0.060 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhcC-------------C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041936 147 AFNALLLALTIAKDYKEVKRVFIEFPKTYG-------------I-KPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSI 212 (402)
Q Consensus 147 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~ 212 (402)
.+..+...+.+.|++++|+..|++.++... . +.+...|..+..+|.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 355566666677777777777766643100 0 1122334444444444555555555554444432
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 213 KPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
+.+...+..+..+|...|++++|.+.|++..+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 12334444444444444444444444444444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.08 E-value=3.8e-05 Score=68.12 Aligned_cols=90 Identities=9% Similarity=0.023 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 041936 144 SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALV 223 (402)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (402)
+..+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|.+.|++..+.. +.+...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34555666666666666666666666664321 2345556666666666666666666666665542 22444555555
Q ss_pred HHHhccCCHHHHH
Q 041936 224 AGFYKEEKYEDVN 236 (402)
Q Consensus 224 ~~~~~~~~~~~a~ 236 (402)
.++...++.+++.
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.2e-05 Score=58.42 Aligned_cols=98 Identities=17% Similarity=0.046 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcC---------C--------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTR---------P--------DLQNERFHAHSIILYGQANMTEHAVRTFKEMDE 138 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~--------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 138 (402)
..+......+.+.|++++|...|+..... + .+.....+..+..+|.+.|++++|+..++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45666667777778888888777776632 0 122234555666666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 041936 139 HKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 139 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 174 (402)
.+ +.+...|..+..+|...|++++|...|++..+.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54 455666666666666666666666666666443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00022 Score=66.89 Aligned_cols=133 Identities=8% Similarity=0.005 Sum_probs=81.9
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD----------SSSAYSILAEMDRKSIKPNASSFGALVAGFYKEE 230 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 230 (402)
.++|++.++++++.. +-+...|+.--..+...|+ ++++++.++.+.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 356677777776542 2234455555455555554 677777777776654 335666666666666666
Q ss_pred --CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 041936 231 --KYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLR-KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK 298 (402)
Q Consensus 231 --~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 298 (402)
+++++++.++++.+.. +.+..+|+.-...+.+.| .++++++.++++.+..+. +...|+.....+.+
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~ 190 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 190 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHh
Confidence 5577777777777665 456666666666666666 677777777777665433 55666655555444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.6e-05 Score=69.77 Aligned_cols=151 Identities=14% Similarity=0.043 Sum_probs=81.3
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041936 216 ASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYG 295 (402)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 295 (402)
...+..+...+.+.|++++|...|++..... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 5567778888889999999999999887653 43321 223333333332221 1367778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCChHH
Q 041936 296 FCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTG-LAGASKVSE 374 (402)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 374 (402)
|.+.|++++|+..+++.++... .+...|..+..+|...|++++|...|+++.+.. +.+...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887532 256778888888888899999988888887653 2344455555444 234566777
Q ss_pred HHHHHHHHHhcCC
Q 041936 375 AKELIGLVKEKFT 387 (402)
Q Consensus 375 a~~~~~~~~~~~~ 387 (402)
+...|..+....|
T Consensus 318 a~~~~~~~l~~~p 330 (338)
T 2if4_A 318 QKEMYKGIFKGKD 330 (338)
T ss_dssp -------------
T ss_pred HHHHHHHhhCCCC
Confidence 7888888776533
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.5e-05 Score=70.66 Aligned_cols=125 Identities=7% Similarity=-0.047 Sum_probs=62.9
Q ss_pred HHhcCCHHHHHHHHHHhHhC-----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh----cCC-CC-CHHHHHH
Q 041936 120 YGQANMTEHAVRTFKEMDEH-----K--LRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT----YGI-KP-DLDTYNR 186 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~p-~~~~~~~ 186 (402)
+...|++++|+.++++.++. | .+....+++.|..+|...|++++|..++++..+. .|- -| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566777776666655431 1 1112345666666666666666666666554321 111 11 2234556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC-----CC--CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041936 187 VIKAFCESSDSSSAYSILAEMDRK-----SI--KPNASSFGALVAGFYKEEKYEDVNKVLQMMER 244 (402)
Q Consensus 187 li~~~~~~~~~~~a~~~~~~~~~~-----g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (402)
|...|...|++++|+.++++..+. |. +....+...+..++...+.+++|+.+|.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665554431 21 11122333444444555555555555555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.97 E-value=5.9e-05 Score=57.13 Aligned_cols=62 Identities=15% Similarity=0.027 Sum_probs=41.5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhC-------CCCCCHHHH----HHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 323 VYFTMVYFMCKGGDYETALGFCKESIAK-------GWVPNFTTM----KSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
.|..+..++.+.|++++|+..+++.++. . +-+...| .....++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5666666666777777777777666654 3 3344556 66677777777777777777777664
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=4.3e-05 Score=70.06 Aligned_cols=127 Identities=12% Similarity=-0.032 Sum_probs=95.1
Q ss_pred HHHhcCCcchHHHHHHHhhc-------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHh-----CC--CCCCHHHHH
Q 041936 84 KLSEANYFNGISQYLEELKT-------RPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDE-----HK--LRHSVGAFN 149 (402)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~--~~~~~~~~~ 149 (402)
.+...|++++|..++++... ...+....+++.+..+|...|++++|+.++++..+ .| .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34578999999999987761 12233457788899999999999999999988654 23 222346789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhh----cCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 150 ALLLALTIAKDYKEVKRVFIEFPKT----YGIK-P-DLDTYNRVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 150 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
.|...|...|++++|+.++++..+. .|-. | ...+.+.+-.++...+.+++|+.+|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887432 2221 2 2345667778888889999999999988763
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.96 E-value=7e-05 Score=53.84 Aligned_cols=80 Identities=13% Similarity=0.048 Sum_probs=55.4
Q ss_pred chHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 92 NGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
++|.+.++.... ..+.+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLA-QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHT-TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356666666662 344556667777777777777777777777777654 456667777777777777777777777776
Q ss_pred hh
Q 041936 172 PK 173 (402)
Q Consensus 172 ~~ 173 (402)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00037 Score=51.97 Aligned_cols=83 Identities=7% Similarity=0.021 Sum_probs=34.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----c
Q 041936 263 KLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK----DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK----G 334 (402)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~ 334 (402)
..+.+++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+..|...|.. .
T Consensus 37 ~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 37 SQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp TTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred cCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCC
Confidence 3333444444444444332 23333334333433 344444444444444432 23333334444443 3
Q ss_pred CChHHHHHHHHHHHhCC
Q 041936 335 GDYETALGFCKESIAKG 351 (402)
Q Consensus 335 g~~~~a~~~~~~~~~~~ 351 (402)
++.++|..++++..+.|
T Consensus 111 ~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 111 KNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 44444444444444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.8e-05 Score=68.17 Aligned_cols=95 Identities=8% Similarity=0.044 Sum_probs=36.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 041936 218 SFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYG-F 296 (402)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~ 296 (402)
.|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.... +...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 45555566666666666666666665543 334555666666666666666666666665543211 22333333333 1
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 041936 297 CKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~ 314 (402)
...+..+.+..+|..|..
T Consensus 310 ~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 233445555566666554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00039 Score=51.89 Aligned_cols=110 Identities=10% Similarity=-0.015 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh----cCChhHH
Q 041936 125 MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE----SSDSSSA 200 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a 200 (402)
++++|++.|++..+.| .+... |...|...+..++|.++|++..+. -+...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4455555555555544 23222 444444444555555555554332 234444555555544 4555555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCC
Q 041936 201 YSILAEMDRKSIKPNASSFGALVAGFYK----EEKYEDVNKVLQMMERYG 246 (402)
Q Consensus 201 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 246 (402)
.++|++..+.| +...+..+...|.. .+++++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55555555543 33444444444444 445555555555554443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00026 Score=53.64 Aligned_cols=60 Identities=12% Similarity=-0.093 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhCCCC-C-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHch
Q 041936 113 HAHSIILYGQANMTEHAVRTFKEMDEHKLR-H-----SV-----GAFNALLLALTIAKDYKEVKRVFIEFP 172 (402)
Q Consensus 113 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 172 (402)
+......+.+.|++++|+..|++..+.... | +. ..|+.+..++.+.|++++|+..+++.+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL 84 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334445566667777777777766554211 0 11 145555555555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.5e-05 Score=56.86 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
.+..+...+...|++++|...|++..+... .+...+..+..++...|++++|...+++.++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444444444555555555544444311 1334444444445555555555555555444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00011 Score=51.29 Aligned_cols=66 Identities=11% Similarity=0.009 Sum_probs=43.8
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 107 LQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 107 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
+.+...+..+..+|...|++++|+..|++..+.+ +.+...|..+..+|...|++++|...|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445566666667777777777777777776654 44556677777777777777777777766643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.77 E-value=3.2e-05 Score=55.08 Aligned_cols=61 Identities=8% Similarity=0.047 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFP 172 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 172 (402)
..+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344455555666666666666666655543 4455556666666666666666666666654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00053 Score=46.42 Aligned_cols=61 Identities=15% Similarity=0.066 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
.+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444445555555555555555554433 33444555555555555555555555555433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00031 Score=47.62 Aligned_cols=62 Identities=18% Similarity=0.450 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444444455555555555555555444321 12344444444555555555555555554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00064 Score=48.63 Aligned_cols=79 Identities=6% Similarity=-0.100 Sum_probs=50.4
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 128 HAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 128 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
+|+..|++..+.. +.+...+..+..+|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555666665554 4556666677777777777777777777665442 334556666666677777777777776666
Q ss_pred Hh
Q 041936 208 DR 209 (402)
Q Consensus 208 ~~ 209 (402)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00023 Score=53.80 Aligned_cols=98 Identities=8% Similarity=0.014 Sum_probs=59.1
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 121 GQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY----------KEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
.+.+.+++|.+.++...+.+ +.+...|+.+..++...+++ ++|+..|++.++.. +-+..+|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHH
Confidence 34556777777777777665 66777777777777766654 36666666665442 2244556666666
Q ss_pred HHhcC-----------ChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 041936 191 FCESS-----------DSSSAYSILAEMDRKSIKPNASSFGALV 223 (402)
Q Consensus 191 ~~~~~-----------~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (402)
|...| ++++|++.|++.++. .|+...|...+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 66543 566666666666553 44444443333
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00024 Score=53.72 Aligned_cols=87 Identities=6% Similarity=0.032 Sum_probs=51.4
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 262 CKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNF----------EEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
.+.+.+++|...++...+.... +...|..+..++...+++ ++|+..|++.++.... +...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 3445667777777777765322 566666666666666554 3666666666653221 345566666666
Q ss_pred HccC-----------ChHHHHHHHHHHHhC
Q 041936 332 CKGG-----------DYETALGFCKESIAK 350 (402)
Q Consensus 332 ~~~g-----------~~~~a~~~~~~~~~~ 350 (402)
...| ++++|.+.|+++++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5543 556666666655554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00066 Score=47.29 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041936 182 DTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMM 242 (402)
Q Consensus 182 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (402)
..+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444444443332 112333444444444444444444444433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.019 Score=56.40 Aligned_cols=154 Identities=10% Similarity=0.040 Sum_probs=91.0
Q ss_pred HHHHhcCCcchHHH-HHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCH
Q 041936 83 NKLSEANYFNGISQ-YLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDY 161 (402)
Q Consensus 83 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (402)
......+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445677777765 44221 102223666777777888888776653211 113345667888
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041936 162 KEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQM 241 (402)
Q Consensus 162 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (402)
++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+.
T Consensus 669 ~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 669 TLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 8888876555 2556788888888888888888888887643 33444445556666665555554
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 041936 242 MERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDE 276 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (402)
....|. ++....+|.+.|++++|.+++.+
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 444331 33344445555666665555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.046 Score=47.46 Aligned_cols=73 Identities=8% Similarity=-0.067 Sum_probs=38.2
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041936 214 PNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYS 290 (402)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 290 (402)
.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 344455555444444555666655555555543 44444545555555556666666655555544 34444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0029 Score=43.57 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=45.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 292 FIYGFCKDGNFEEAKKFYRIMSNSGLSPNSS-VYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
....+...|++++|...+++..+... .+.. .+..+..+|...|++++|...+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 45667788888888888888887532 2456 77788888888888888888888888764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.002 Score=58.05 Aligned_cols=64 Identities=6% Similarity=0.057 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhh----cCC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 146 GAFNALLLALTIAKDYKEVKRVFIEFPKT----YGI-KPD-LDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.+++.|..+|...|++++|+.++++..+. .|- -|+ ..+++.|...|...|++++|+.++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45666666666666666666666555321 111 122 34566666666666666666666665543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.089 Score=40.32 Aligned_cols=100 Identities=6% Similarity=0.140 Sum_probs=61.8
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhH
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSS 199 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 199 (402)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|... +. +..+.-.|.-.|+.++
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ-HS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-TC---------HHHHHHHHHHHTCHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh-CC---------HHHHHHHHHHhCCHHH
Confidence 45677777777776654 34567777777777777777777777766 21 4445555555666666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041936 200 AYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQM 241 (402)
Q Consensus 200 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (402)
..++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 665555554443 244445555566777777766644
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0051 Score=55.44 Aligned_cols=93 Identities=11% Similarity=-0.104 Sum_probs=61.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHchhh----cC-CCC-CHHH
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHK---LRH----SVGAFNALLLALTIAKDYKEVKRVFIEFPKT----YG-IKP-DLDT 183 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~p-~~~~ 183 (402)
+..+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++++..+- .| .-| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556778888888887766421 112 2456777888888888888888887766432 12 122 2356
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 184 YNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77888888888888888888877654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.067 Score=38.59 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 289 YSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
+...+......|+-++-.+++..+.. +..|++...-.+..+|.+.|+..++.+++.++.+.|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33444444445555555555444322 123444444445555555555555555555555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.046 Score=53.72 Aligned_cols=151 Identities=9% Similarity=0.090 Sum_probs=102.1
Q ss_pred cCCChhHHHH-HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 041936 51 SESNPEKILE-ICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHA 129 (402)
Q Consensus 51 ~~~~~~~al~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 129 (402)
..++.+.|.+ ++.. .++......++..+.+.|.+++|.++.+. +. .-.......|++++|
T Consensus 611 ~~~~~~~a~~~~l~~-------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 611 LRGEIEEAIENVLPN-------VEGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLA 671 (814)
T ss_dssp HTTCHHHHHHHTGGG-------CCCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHH
T ss_pred HhCCHHHHHHHHHhc-------CCchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHH
Confidence 4567777765 4311 11133457888888899999988875531 11 113346789999999
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 209 (402)
.++.+.+ .+...|..+...+.+.++++.|++.|..+ +. |..+...+...|+.+...++-+....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~-~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA-HD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc-cC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 9987553 56789999999999999999999999988 32 55566666667877777666666555
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041936 210 KSIKPNASSFGALVAGFYKEEKYEDVNKVLQMM 242 (402)
Q Consensus 210 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (402)
.| -++....+|.+.|++++|.+++.++
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 54 2344444555566666666655443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.1 Score=45.34 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=53.5
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 041936 248 KSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYF 325 (402)
Q Consensus 248 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 325 (402)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+.+.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4566677777666666688888888888888764 67667777777777888888888888877774 45555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.012 Score=40.18 Aligned_cols=67 Identities=6% Similarity=-0.074 Sum_probs=33.9
Q ss_pred CHHhHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 041936 320 NSSVYFTMVYFMCKGGD---YETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFT 387 (402)
Q Consensus 320 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 387 (402)
|...+..+..++...++ .++|..++++.++.. +-+......+...+.+.|++++|+..|+.+.+..+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444444444432222 455555555555543 34455555555555555555555555555555433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.016 Score=39.68 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=38.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVG-AFNALLLALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 174 (402)
...+...|++++|+..|++..+.. +.+.. .+..+..+|...|++++|...|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445666777777777777776654 44555 6667777777777777777777776554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0066 Score=54.69 Aligned_cols=86 Identities=5% Similarity=-0.139 Sum_probs=62.4
Q ss_pred cCCcchHHHHHHHhh-------cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHh-----CC--CCCCHHHHHHHHH
Q 041936 88 ANYFNGISQYLEELK-------TRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDE-----HK--LRHSVGAFNALLL 153 (402)
Q Consensus 88 ~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~--~~~~~~~~~~l~~ 153 (402)
.|++++|..++++.. ....+....+++.+..+|...|++++|+.++++..+ .| .+....+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 467777777776655 122233456788888899999999999998888654 23 1223456888899
Q ss_pred HHHHcCCHHHHHHHHHHchh
Q 041936 154 ALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~ 173 (402)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999998888754
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.014 Score=40.68 Aligned_cols=66 Identities=12% Similarity=0.073 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 285 NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSG------LSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
+..-+..+...+...|+++.|..+|+...+.. -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44445567777777777777777777766531 1124556677777777777777777777777664
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0071 Score=54.50 Aligned_cols=92 Identities=12% Similarity=-0.013 Sum_probs=60.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHhC-----C--CCCCHHH
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSG---LSPN----SSVYFTMVYFMCKGGDYETALGFCKESIAK-----G--WVPNFTT 358 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~ 358 (402)
+..+...|++++|+.++++..+.. ..|+ ..+++.+..+|...|++++|+.+++++++. | .+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556677788888777776531 1121 356677777787788888888777766542 2 1223345
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 359 MKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 359 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67777778888888888888777665
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.21 Score=41.72 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHhCCCCCC---HhhHHHHHHHHhcc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc-CCHH
Q 041936 198 SSAYSILAEMDRKSIKPN---ASSFGALVAGFYKE-----EKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKL-RKCA 268 (402)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~ 268 (402)
..|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++....+.++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4666667776664 444 45777788888774 88888888888888865222467777777888774 8888
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHH
Q 041936 269 EAKALLDEMLSKGMK--PNSVTYSHF 292 (402)
Q Consensus 269 ~a~~~~~~~~~~~~~--p~~~~~~~l 292 (402)
++.+.+++....... |+....+.+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 888888888887655 555444433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.095 Score=37.83 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=69.4
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAY 201 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 201 (402)
-.|..++..++..+... +.+..-||.+|--....-+-+-..++++.+-+-. |.. ..|+.....
T Consensus 19 ldG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----Dis----------~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----DLD----------KCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----CGG----------GCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhc----CcH----------hhhcHHHHH
Confidence 34555666666655554 3344555555555555555555555555553322 211 122222222
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 041936 202 SILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG 281 (402)
Q Consensus 202 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (402)
..+-.+ ..+...+...++.+...|+.++-.+++..+... .+|+....-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 222221 113344555555566666666666666664332 24555555666666666666666666666666655
Q ss_pred C
Q 041936 282 M 282 (402)
Q Consensus 282 ~ 282 (402)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.063 Score=41.13 Aligned_cols=129 Identities=9% Similarity=0.070 Sum_probs=90.5
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 041936 224 AGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFE 303 (402)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 303 (402)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... |..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445789999999987765 4678899999999999999999999988652 344555566778888
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLV 382 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 382 (402)
+-.++-+.....|- ++.....+.-.|+++++.+++.+. |-.|.. .......|..+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 87777666665542 445555566789999999998554 312211 11122357778888887765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.045 Score=37.19 Aligned_cols=64 Identities=8% Similarity=-0.006 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHHhcCC---HHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 109 NERFHAHSIILYGQANM---TEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 109 ~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
+...+..+..++...++ .++|..++++..+.+ +.+......+...+.+.|++++|+..|+.+.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444432222 455555555555544 44555555555555555666666655555543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.021 Score=42.65 Aligned_cols=82 Identities=11% Similarity=0.158 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHccCChHHHH
Q 041936 267 CAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDG---NFEEAKKFYRIMSNSGLSP--NSSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 267 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 341 (402)
...+.+-|.+....|. ++..+...+.-++++.+ +.++++.+++...+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3444445554444433 34444444555555555 3445555555555542 12 2333334444555556666666
Q ss_pred HHHHHHHhC
Q 041936 342 GFCKESIAK 350 (402)
Q Consensus 342 ~~~~~~~~~ 350 (402)
++++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 665555553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.052 Score=37.72 Aligned_cols=64 Identities=8% Similarity=-0.096 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcC------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTR------PDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH 139 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 139 (402)
..+..+...+.+.++++.|...++..... +......++..+..++.+.|+++.|+..+++..+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445555555555555555555554421 11223344445555555555555555555555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.04 E-value=1.3 Score=43.67 Aligned_cols=258 Identities=10% Similarity=0.016 Sum_probs=123.5
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHchhhcCC------CCCHHHHHHHHHH
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVG--AFNALLLALTIAKDYKEVKRVFIEFPKTYGI------KPDLDTYNRVIKA 190 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~p~~~~~~~li~~ 190 (402)
+....|+.++++.+++.....+-..+.. .-..+.-+....|..+++..++......... .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3445666666666666544311012222 2222333344455545566666555443210 0111122223233
Q ss_pred HHhcCC-hhHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH--HHHHccC
Q 041936 191 FCESSD-SSSAYSILAEMDRKSIKPNA--SSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRI--HSLCKLR 265 (402)
Q Consensus 191 ~~~~~~-~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~~ 265 (402)
.+-.|. -+++.+.+..+....- ... ..-..+...+.-.|+.+....+++.+.+.. +..+...+. -++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333332 2345555555544321 111 111233344556677777777777666532 222233333 3344667
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHH
Q 041936 266 KCAEAKALLDEMLSKGMKPNSVTYS---HFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALG 342 (402)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 342 (402)
+.+.+..+++.+... ..|. .-|. ++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 777777777777654 1222 2222 34456777788777777887777642 1222222233334444566666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHHh
Q 041936 343 FCKESIAKGWVPNFTTMKSLVTGLAGASKV-SEAKELIGLVKE 384 (402)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 384 (402)
+++.+.+.+ .|....-..+.-+....|.. .++.+++..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666665544 34433333343444444443 466667776654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.062 Score=40.07 Aligned_cols=81 Identities=10% Similarity=-0.024 Sum_probs=45.3
Q ss_pred HHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHchhhcCCCC--CHHHHHHHHHHHHhcCChhHHH
Q 041936 127 EHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK---DYKEVKRVFIEFPKTYGIKP--DLDTYNRVIKAFCESSDSSSAY 201 (402)
Q Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~ 201 (402)
..+.+-|.+..+.| +++..+...+..++++.+ +.++++.++++..+.. .| ....+-.+.-+|.+.|++++|.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHH
Confidence 34444555544444 356666666666666666 4446666666665542 23 2334445555566666666666
Q ss_pred HHHHHHHhC
Q 041936 202 SILAEMDRK 210 (402)
Q Consensus 202 ~~~~~~~~~ 210 (402)
+.++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.12 Score=37.09 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChHHH
Q 041936 301 NFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYET---ALGFCKESIAKGWVP--NFTTMKSLVTGLAGASKVSEA 375 (402)
Q Consensus 301 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 375 (402)
....+.+-|.+....|. ++..+-..+..++.+...... +..++++..+.+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 33444444444444333 455555555555555554443 556666555543 12 233333445556666666666
Q ss_pred HHHHHHHHhcCCCCh
Q 041936 376 KELIGLVKEKFTKNV 390 (402)
Q Consensus 376 ~~~~~~~~~~~~~~~ 390 (402)
.+.++.+.+.-|.|.
T Consensus 94 ~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhCCCCH
Confidence 666666666544443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.17 Score=37.30 Aligned_cols=113 Identities=9% Similarity=0.122 Sum_probs=65.0
Q ss_pred CChhhHHHHHHHHHccCCH------HHHHHHHHHHHHCCCCCCHH-HHHHHHHH------HHhcCCHHHHHHHHHHHHhC
Q 041936 249 SGVSMYNVRIHSLCKLRKC------AEAKALLDEMLSKGMKPNSV-TYSHFIYG------FCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 249 ~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~-~~~~l~~~------~~~~~~~~~a~~~~~~m~~~ 315 (402)
-|..+|-..+....+.|++ ++..++|++.... ++|+.. .|...+.. +...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666666666666777 7777777777664 444421 22222221 12346677777777777654
Q ss_pred CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041936 316 GLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVT 364 (402)
Q Consensus 316 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (402)
.-+. ...|......-.+.|++..|.+++...+..+.+ +...+...++
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 3333 555555555556677777777777777766533 3344444433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=95.52 E-value=0.23 Score=33.68 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHH
Q 041936 337 YETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 397 (402)
.-+..+-+..+...++.|++....+.+++|.+.+++..|.++|+-++.+..+....|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3344444455555555555555555555555555555555555555555444433444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.28 Score=36.26 Aligned_cols=104 Identities=11% Similarity=0.051 Sum_probs=66.2
Q ss_pred CCHhhHHHHHHHHhccCCH------HHHHHHHHHHHHCCCCCCh-hhHHHHHHHH------HccCCHHHHHHHHHHHHHC
Q 041936 214 PNASSFGALVAGFYKEEKY------EDVNKVLQMMERYGMKSGV-SMYNVRIHSL------CKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~------~~~~~~~~a~~~~~~~~~~ 280 (402)
-|..+|-..+...-+.|++ ++..++|++.... ++|+. ..|...+..+ ...+++++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3566676677666666777 7777788777664 34432 2233333322 2346788888888888664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041936 281 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP 319 (402)
Q Consensus 281 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 319 (402)
+-.. ...|....+--.+.|+...|.+++...+..+.+|
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3232 5555555565667888888888888888776654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.23 Score=41.43 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc-CChH
Q 041936 268 AEAKALLDEMLSKGMKPN---SVTYSHFIYGFCKD-----GNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKG-GDYE 338 (402)
Q Consensus 268 ~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g~~~ 338 (402)
..|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444444444443 233 33455555555552 56666666666665532211244455555555553 6666
Q ss_pred HHHHHHHHHHhCCCC
Q 041936 339 TALGFCKESIAKGWV 353 (402)
Q Consensus 339 ~a~~~~~~~~~~~~~ 353 (402)
++.+.+++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 666666666655433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.51 Score=33.92 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHH
Q 041936 339 TALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 397 (402)
+..+-++.+...++.|++......+++|.+.+++-.|.++|+-++.+..+....|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 44444455555555566666666666666666666666666665555444444454444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.41 E-value=2.7 Score=37.82 Aligned_cols=164 Identities=9% Similarity=0.067 Sum_probs=97.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCC--HH
Q 041936 219 FGALVAGFYKEEKYEDVNKVLQMMERY--GMKSG---VSMYNVRIHSLCKLRKCAEAKALLDEMLS----KGMKPN--SV 287 (402)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~p~--~~ 287 (402)
...|...+...|++.+|.+++..+... +.... ...+...++.|...+++.+|..+++++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 355777888889999999888887642 21111 34567778888999999999999888642 222233 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHhH-----HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAKKFYRIMSNS-GLSPNSSVY-----FTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKS 361 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (402)
.+...+..+...+++.+|.+.|.+.... ...-|...+ ..++.... .+....-..++........-++...|..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iL-a~~~~~~~~ll~~~~~~~~~~~l~~~~~ 298 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVL-SPYGNLQNDLIHKIQNDNNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-SSCSSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHhhcccccccHHHHH
Confidence 5667777888899999998888877643 111122222 22222222 2211222222332222222356778888
Q ss_pred HHHHHHcC--CChHHHHHHHHHHH
Q 041936 362 LVTGLAGA--SKVSEAKELIGLVK 383 (402)
Q Consensus 362 l~~~~~~~--g~~~~a~~~~~~~~ 383 (402)
++.+|... .+++.+.+.|+...
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHHhchHhhhHHHHHHHHHHh
Confidence 88888754 45666666665543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.25 Score=47.44 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=45.8
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 328 VYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
...|...|+++.|+++.++....- +.+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344667899999999999988764 6678899999999999999999999988774
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.00 E-value=5.4 Score=40.86 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 150 ALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 150 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
.++..+...+..+.+.++..-. +.+....-.+..++...|++++|.+.|++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3455555666666665544333 123333344556666677777777776654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.94 E-value=1.7e-06 Score=76.41 Aligned_cols=264 Identities=9% Similarity=0.063 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
..|+.+..+....+.+.+|++-| .+ ..++..|..++....+.|.+++-++.+...++.. .++..=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy---Ik---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY---IK---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS---CC---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHH---Hh---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 45666666666666666554321 11 2233345566666666666666666665554432 2223334566666
Q ss_pred HHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 041936 156 TIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDV 235 (402)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 235 (402)
++.++..+.++.+ . .|+..-...+..-|...|.++.|.-+|..+. -|..|..++.+.|++..|
T Consensus 127 Ak~~rL~elEefl----~----~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 127 AKTNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HTSCSSSTTTSTT----S----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSS
T ss_pred HhhCcHHHHHHHH----c----CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHH
Confidence 6666654433222 1 3444445556666666666666554443321 233444455666666655
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 236 NKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
.+.- ++ .-++.||..+-.+|...+++.-|.-.--.++-. || -...++..|...|-+++-+.+++.-...
T Consensus 190 VdaA---rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGA---RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTT---TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHH---Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 4322 11 356778999999999999988776655554422 11 1234677888999999999999887743
Q ss_pred CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 316 GLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 316 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
-+....+|+-|.-.|++- ++++..+.++..-.+ .| .-.++++|.+...|.++.=++....
T Consensus 259 -ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sr---iN---ipKviracE~ahLW~ElvfLY~~yd 318 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKF-KPQKMREHLELFWSR---VN---IPKVLRAAEQAHLWAELVFLYDKYE 318 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS---SC---CTTTHHHHTTTTCHHHHHHHHHHHT
T ss_pred -CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh---cc---HHHHHHHHHHHhhHHHHHHHHhcch
Confidence 245778899999888876 455555555433222 11 1247899999999999988877543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.84 E-value=1.3 Score=42.67 Aligned_cols=137 Identities=9% Similarity=0.025 Sum_probs=90.0
Q ss_pred CCCCCccchHHHHHHHhcCCC-hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-cchHHHHHHHhhc-------C
Q 041936 34 TPLTSKDKTRAALTLLKSESN-PEKILEICRAAALTPESHLDRLAFSIAINKLSEANY-FNGISQYLEELKT-------R 104 (402)
Q Consensus 34 ~~~~~~~~~~~~l~~l~~~~~-~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~-------~ 104 (402)
+...++.....+++.+...++ .+.|+.+|+......+.. +......++..+...++ --+|.+++.+..+ .
T Consensus 243 ~t~v~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~-~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~ 321 (754)
T 4gns_B 243 ATIVNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIH-DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLND 321 (754)
T ss_dssp CCSSSSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 455677778888999988777 477999998886553211 22222233333333321 1234444433321 1
Q ss_pred CCCCc----------hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 041936 105 PDLQN----------ERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFP 172 (402)
Q Consensus 105 ~~~~~----------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 172 (402)
-...+ ..+...-+..+...|+++-|+.+-++..... +-+-.+|..|..+|...|+++.|+-.++.++
T Consensus 322 l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 322 LPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11111 1233333556778999999999999988764 6678999999999999999999999999885
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.59 E-value=6.2 Score=38.98 Aligned_cols=259 Identities=8% Similarity=-0.019 Sum_probs=138.6
Q ss_pred HHHHHhcCCcchHHHHHHHhhcCCCCCchH--HHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-------CCCHHHHHHHH
Q 041936 82 INKLSEANYFNGISQYLEELKTRPDLQNER--FHAHSIILYGQANMTEHAVRTFKEMDEHKL-------RHSVGAFNALL 152 (402)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~l~ 152 (402)
--++...|+.+++..++..........+.. .-..+.-+....|..+++..++.......- .+....-..+.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 345677888888988888776422122222 222223345556665677777776554220 01122222232
Q ss_pred HHH--HHcCCHHHHHHHHHHchhhcCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH--HHHH
Q 041936 153 LAL--TIAKDYKEVKRVFIEFPKTYGIKPDLDTYN--RVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGAL--VAGF 226 (402)
Q Consensus 153 ~~~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--~~~~ 226 (402)
-++ .-.++ +++.+.+..+.... .+...... .|...+...|+.+....++..+.+.. +..+...+ .-++
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGl 534 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLAL 534 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHH
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHh
Confidence 233 33344 34455555554431 11111122 23334556788787888888776642 22333333 3344
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChhhHH--HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041936 227 YKEEKYEDVNKVLQMMERYGMKSGVSMYN--VRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEE 304 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 304 (402)
...|+.+.+..+.+.+.... .|....-. ++.-+|+..|+......+++.+.+.. ..+......+.-++...|+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 535 INYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 46788888888888877642 23222211 23446777888877777888887652 2233333333344555677777
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh-HHHHHHHHHHHh
Q 041936 305 AKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDY-ETALGFCKESIA 349 (402)
Q Consensus 305 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 349 (402)
+.+++..+.+.+ .|....-..+.-+....|.. .++...+..+..
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 777777666543 34444334444444444443 567778887765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.48 E-value=0.39 Score=34.39 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=7.9
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 041936 295 GFCKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~ 314 (402)
++.+.|++++|.+.++.+.+
T Consensus 83 g~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 33344444444444443333
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.46 E-value=4.2 Score=36.62 Aligned_cols=258 Identities=9% Similarity=0.060 Sum_probs=146.1
Q ss_pred CChhHHHHHHHHhh----cCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHH----HHHhcC
Q 041936 53 SNPEKILEICRAAA----LTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSII----LYGQAN 124 (402)
Q Consensus 53 ~~~~~al~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~~ 124 (402)
++++.|++-+.... ...+..........++..|...++++...+.+..+....... ......++. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 57777777664433 334455567788899999999999999988887766332222 222233333 232333
Q ss_pred CHHH--HHHHHHHhHh--CC-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHH
Q 041936 125 MTEH--AVRTFKEMDE--HK-LRH---SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LDTYNRVIKAFC 192 (402)
Q Consensus 125 ~~~~--A~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~ 192 (402)
..+. -..+.+.+.. .| +.. .......|...+...|++.+|..++.++..+..-..+ ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3332 2222222211 11 112 2334567888899999999999999998543221222 345677788899
Q ss_pred hcCChhHHHHHHHHHHh----CCCCCC--HhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhH-----HHHHHH
Q 041936 193 ESSDSSSAYSILAEMDR----KSIKPN--ASSFGALVAGFYKEEKYEDVNKVLQMMERYG-MKSGVSMY-----NVRIHS 260 (402)
Q Consensus 193 ~~~~~~~a~~~~~~~~~----~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~-----~~ll~~ 260 (402)
..+++..|..++.++.. ....|+ ...+...+..+...+++.+|-+.|.++.+.- ...+...+ ..++..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999887642 222222 2356667777888899998888887765421 11122212 222222
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Q 041936 261 LCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKD--GNFEEAKKFYRIM 312 (402)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~m 312 (402)
.. .+....-..+..........++...|..++.+|... .+++.+.+.|...
T Consensus 269 iL-a~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 269 VL-SPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HH-SSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred Hh-CCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 22 221122222223322222234566778888887654 3455555555443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.35 E-value=2.9 Score=42.80 Aligned_cols=147 Identities=17% Similarity=0.147 Sum_probs=97.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-----------------
Q 041936 79 SIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKL----------------- 141 (402)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~----------------- 141 (402)
..++..+...+.++.+.++..... .+....-.+..+|...|++++|.+.|++... |+
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 346667777888888777665543 1222223456678888999999988876421 11
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCC-C--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041936 142 ------RHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP-D--LDTYNRVIKAFCESSDSSSAYSILAEMDRKSI 212 (402)
Q Consensus 142 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~ 212 (402)
..-..-|..++..+.+.+.++.+.++-...++..+-.+ + ...|..+.+++...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 11224577888899999999988887776655432222 1 12588889999999999999999988876543
Q ss_pred CCCHhhHHHHHHHHhccCCHH
Q 041936 213 KPNASSFGALVAGFYKEEKYE 233 (402)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~ 233 (402)
+ ......++...+..|..+
T Consensus 970 r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHH
T ss_pred H--HHHHHHHHHHHHhCCChh
Confidence 3 445666666666555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.49 Score=41.89 Aligned_cols=70 Identities=14% Similarity=0.054 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHhhHH
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR-----KSIKPNASSFG 220 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~ 220 (402)
..++..+...|+++++...+..+...+ +-+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344555556666666666665554433 44555666666666666666666666665433 26666655433
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.65 Score=41.08 Aligned_cols=76 Identities=11% Similarity=0.186 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH-----CCCCCChhhHHHH
Q 041936 183 TYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMER-----YGMKSGVSMYNVR 257 (402)
Q Consensus 183 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 257 (402)
+...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 35567788889999999999999988763 66888999999999999999999999998754 5899987765444
Q ss_pred HH
Q 041936 258 IH 259 (402)
Q Consensus 258 l~ 259 (402)
-.
T Consensus 252 ~~ 253 (388)
T 2ff4_A 252 ER 253 (388)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.82 E-value=6.3 Score=34.66 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=26.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 222 LVAGFYKEEKYEDVNKVLQMMERYGMKSG-----VSMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
++..|...|++.+|.+++..+.+.=-..| ..+|..-++.|...+++.++...+....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44555555555555555555443100111 1223334445555555555555555543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=90.67 E-value=0.14 Score=45.96 Aligned_cols=217 Identities=11% Similarity=0.131 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 041936 74 DRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLL 153 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 153 (402)
|+..|..++....+.|.+++-..++....+. .....+=+.++.+|++.++..+-.+++. .|+..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 3346888888888889999888888776643 3333444578888888888655433221 355555666777
Q ss_pred HHHHcCCHHHHHHHHHHchhhc-------------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTY-------------------GIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKP 214 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~-------------------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~ 214 (402)
-|...|.++.|.-+|..+..-. .-.-++.||..+-.+|...+++.-|.-.--.++-.
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---- 228 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---- 228 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC----
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc----
Confidence 7777787777777776552110 11235667888888888888777665543333321
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-------CHH
Q 041936 215 NASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP-------NSV 287 (402)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-------~~~ 287 (402)
......++..|-..|.+++.+.+++.-.... ......|+-|.-.|++- ++++..+.++....+=--| ...
T Consensus 229 -adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 229 -ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp -SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 1123345566777888888888887766432 45667777777777764 5666666655433220011 234
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 041936 288 TYSHFIYGFCKDGNFEEAK 306 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~ 306 (402)
.|.-++-.|.+-+++|.|.
T Consensus 306 LW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHhcchhHHHHH
Confidence 4666666666666666554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.64 E-value=2.3 Score=30.68 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 283 KPNSVTYSHFIYGFCKDGN---FEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 283 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.|+..+--.+.-++++..+ ..+++.++.++.+.+..-....+-.+.-++.+.|++++|.++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3444443334444444443 3355666666655431112334444555566666666666666666654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.14 E-value=7.9 Score=32.78 Aligned_cols=18 Identities=17% Similarity=0.012 Sum_probs=10.9
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 041936 296 FCKDGNFEEAKKFYRIMS 313 (402)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~ 313 (402)
|...|+...|..+++...
T Consensus 198 yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 445566666666666554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=89.98 E-value=9.6 Score=33.53 Aligned_cols=167 Identities=10% Similarity=-0.009 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhc----CCCCCchHHHHHHHHHHHhcC-CHHHHHHHHH----HhHhCCCC-CCHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKT----RPDLQNERFHAHSIILYGQAN-MTEHAVRTFK----EMDEHKLR-HSVG 146 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~----~~~~~~~~-~~~~ 146 (402)
....+...+.+.|+.++..+++..... -+-..+..+...++..+.... ..+.-.++.. +....... ....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888777776651 111233455666676666543 3333333333 33322100 0001
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhhHH
Q 041936 147 AFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD----LDTYNRVIKAFCESSDSSSAYSILAEMDRK--SIKPNASSFG 220 (402)
Q Consensus 147 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~ 220 (402)
.=..++..|...|++.+|..++.++.+...-..| ...|-.-+..|...+++.++...+...... .+.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 1225777888888888888888777553221111 234555667788888888888888766533 2223333222
Q ss_pred H----HHHHHh-ccCCHHHHHHHHHHHH
Q 041936 221 A----LVAGFY-KEEKYEDVNKVLQMME 243 (402)
Q Consensus 221 ~----l~~~~~-~~~~~~~a~~~~~~~~ 243 (402)
. -.-.+. ..+++..|...|-+..
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 123345 6788888877665543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.18 E-value=5.1 Score=29.27 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 283 KPNSVTYSHFIYGFCKDGN---FEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 283 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
.|+..+--.+.-++.+..+ ..+++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444444444445555443 3356666666655432212333344455666666666666666666664
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.92 E-value=4.6 Score=29.09 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041936 304 EAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLV 363 (402)
Q Consensus 304 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (402)
+..+-++.+....+.|++....+.+++|.+.+|+..|.++++-.+.+- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 444555555555566666666666666666666666666666655542 23334454444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.82 E-value=4.2 Score=30.61 Aligned_cols=59 Identities=12% Similarity=0.031 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcC----CCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 041936 79 SIAINKLSEANYFNGISQYLEELKTR----PDLQN----ERFHAHSIILYGQANMTEHAVRTFKEMD 137 (402)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~ 137 (402)
-.-+..+...+.++.|+-+.+.+... +...+ ..++..+..++...+++..|...|++..
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33445555566666666555554411 11101 1233444556666777777777777643
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.72 E-value=2.4 Score=31.91 Aligned_cols=125 Identities=7% Similarity=0.018 Sum_probs=68.0
Q ss_pred CCccchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCC-------HHHHHHHHHHHHhcCCcchHHHHHHHhhc--CCCC
Q 041936 37 TSKDKTRAALTLLKSESNPEKILEICRAAALTPESHLD-------RLAFSIAINKLSEANYFNGISQYLEELKT--RPDL 107 (402)
Q Consensus 37 ~~~~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~ 107 (402)
.+-..+-.-++.+-..+-++.|.-+...+....+..|+ ..++..+.+++...+++.+|...|++... +...
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 34455666777788888888887766654322222222 23566777888999999999999998651 1111
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 041936 108 QNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKT 174 (402)
Q Consensus 108 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 174 (402)
........+- ....... ......+...--.+..+|.+.+++++|+.+++.++.+
T Consensus 98 k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 98 KTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp --------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1111111000 0000000 0111234444455777888888888888888887543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.52 E-value=1.9 Score=31.06 Aligned_cols=69 Identities=10% Similarity=-0.127 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHhcC---CcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 041936 71 SHLDRLAFSIAINKLSEAN---YFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH 139 (402)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 139 (402)
-.|++.+--...-++.+.. +..+++.+++.+...+.....+.+-.+..++.+.|++++|.+..+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3445555555555666654 34467777777764332233445556666788888888888888887765
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.23 E-value=4.5 Score=27.47 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 041936 125 MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPK 173 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 173 (402)
+.=++.+-++.+...++-|++....+.+.+|.+.+++..|+++|+-+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445666666666666667777777777777777777777777766643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.08 E-value=4.7 Score=29.46 Aligned_cols=69 Identities=10% Similarity=-0.123 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHhcC---CcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCC
Q 041936 72 HLDRLAFSIAINKLSEAN---YFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHK 140 (402)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 140 (402)
.|+..+-....-++.+.. +..+++.+++.+.........+..-.+..++.+.|++++|.+..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 456666666666666665 345677777777643332344444456667888888888888888887753
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.83 E-value=11 Score=33.76 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEH--KLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
....+...|.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3445555566666666666666665542 22233445555556666666666666665555
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=83.19 E-value=25 Score=31.44 Aligned_cols=144 Identities=13% Similarity=0.062 Sum_probs=96.3
Q ss_pred hcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 041936 50 KSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHA 129 (402)
Q Consensus 50 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 129 (402)
....+++.|+.+........ -...|..-.+.+...|++++|.++--... ++...+..+.+.+-.+=..-|+..--
T Consensus 340 ~~l~n~~lA~~lA~R~~LpG----Ad~L~~~~F~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~spl 414 (494)
T 1bpo_A 340 NVLQNPDLALRMAVRNNLAG----AEELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPL 414 (494)
T ss_dssp HTTCCHHHHHHHHHHTTCSS----CHHHHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCHH
T ss_pred hccCCHHHHHHHHHhcCCcc----HHHHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCCHH
Confidence 34578888888877665443 33568888889999999999998887766 55677777776655544455777778
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMD 208 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 208 (402)
+.+|..+.+.| ..+..---.+++.....|+.+-.+.++.+ ..+..+...-..+ +..+..-|..+|.+..
T Consensus 415 L~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e----~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 415 LQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE----DKLECSEELGDLV-----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH----TCSCCCHHHHHHH-----HHHCSHHHHHHHHHHC
T ss_pred HHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc----CCccccHHhHhhh-----hhcCHHHHHHHHHHcC
Confidence 88888888877 66665555667777777877666666543 3445555432222 3335566666665553
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=82.02 E-value=34 Score=32.17 Aligned_cols=322 Identities=9% Similarity=0.007 Sum_probs=167.8
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHH
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIIL 119 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 119 (402)
..+..+...+. .+++..+.++...+... +..| -..|..+...+. ....+++...+.... +.+....+-..-+..
T Consensus 8 ~~~~~a~~a~~-~~~~~~~~~l~~~l~~~-pL~~-yl~y~~l~~~l~-~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~ 81 (618)
T 1qsa_A 8 SRYAQIKQAWD-NRQMDVVEQMMPGLKDY-PLYP-YLEYRQITDDLM-NQPAVTVTNFVRANP--TLPPARTLQSRFVNE 81 (618)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHSGGGTTS-TTHH-HHHHHHHHHTGG-GCCHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHhhcCC-CcHH-HHHHHHHHhCcc-cCCHHHHHHHHHHCC--CChhHHHHHHHHHHH
Confidence 34556666665 46777777665544322 2211 123333332221 123445555554422 223334555566777
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhH
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSS 199 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 199 (402)
+.+.+++...+..+.. .+.+...-.....+....|+..+|......+-... ......+..++..+.+.|....
T Consensus 82 l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 82 LARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--KSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS--SCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHCCCCCH
Confidence 7788888877775543 15566666667778888899877777666663332 2334557888888887665543
Q ss_pred --HHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC---------CCCCChh---hHHHHHHHHHccC
Q 041936 200 --AYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY---------GMKSGVS---MYNVRIHSLCKLR 265 (402)
Q Consensus 200 --a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~---~~~~ll~~~~~~~ 265 (402)
..+-++.+...| +...-..++..+ . .+.....+.+..+.+. ...++.. .+...+.-+.+ .
T Consensus 155 ~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 155 LAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-c
Confidence 333344444443 111111121111 0 0010000111111110 0112222 11122233333 4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHH
Q 041936 266 KCAEAKALLDEMLSKGMKPNSVT----YSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETAL 341 (402)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 341 (402)
+.+.|...+........ .+... +..+.......+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 78889999988865432 23322 2223333344453556666776655432 33333444444455679999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 342 GFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
..|+.|.... .....-.--+.+++.+.|+.++|..+|..+..
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9998886532 12333344456677888999999999998875
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=80.43 E-value=4.9 Score=32.99 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=40.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 041936 294 YGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
....+.|++++++.....-++... -|...-..++..+|-.|+++.|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345567788888877777776643 36667777788888888888888777776654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=80.37 E-value=9 Score=31.47 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 122 QANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
+.|++++|+.....-++.. |.|...-..++..+|-.|+++.|..-++.+
T Consensus 9 ~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444444444444433333 334444444444444444444444444333
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.15 E-value=11 Score=25.46 Aligned_cols=74 Identities=9% Similarity=-0.011 Sum_probs=40.4
Q ss_pred CcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041936 90 YFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFI 169 (402)
Q Consensus 90 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 169 (402)
.-++|..|-+.+...+. .+.+-..-+..+.+.|++++|..+.+.+. .||...|-.|- -.+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 44555555555543332 11111112234566777777777666554 66766665543 345666677777666
Q ss_pred Hc
Q 041936 170 EF 171 (402)
Q Consensus 170 ~~ 171 (402)
.+
T Consensus 94 ~l 95 (116)
T 2p58_C 94 RL 95 (116)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 402 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.36 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.36 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.35 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.33 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.32 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.26 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.25 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.23 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.16 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.12 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.79 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.76 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.74 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.71 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.67 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.61 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.58 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.54 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.52 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.49 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.42 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.4 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.37 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.32 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.28 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.27 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.26 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.22 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.2 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.16 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.98 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.98 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.94 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.91 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.9 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.89 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.79 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.76 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.72 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.66 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.65 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.41 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.38 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.22 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.11 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.98 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.57 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.36 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.29 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 95.54 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.0 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.28 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.12 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.85 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 88.07 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.11 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=8.5e-21 Score=168.58 Aligned_cols=340 Identities=9% Similarity=0.015 Sum_probs=275.7
Q ss_pred hcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 041936 50 KSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHA 129 (402)
Q Consensus 50 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 129 (402)
-..|+++.|.+.++.+....+ -+...+..+...+.+.|++++|...++.+... .|.+...+..+..+|.+.|++++|
T Consensus 10 ~~~G~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHhhhhcccccc
Confidence 346899999999988865432 25678889999999999999999999998843 455677888999999999999999
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHH----------------------------------HHcCCHHHHHHHHHHchhhc
Q 041936 130 VRTFKEMDEHKLRHSVGAFNALLLAL----------------------------------TIAKDYKEVKRVFIEFPKTY 175 (402)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------------------~~~~~~~~a~~~~~~~~~~~ 175 (402)
+..+....+.. +.+........... ...+....+...+.......
T Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC
Confidence 99999988765 33333333333222 22334444555554443331
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHH
Q 041936 176 GIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYN 255 (402)
Q Consensus 176 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (402)
+.+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++.....+ +.+...+.
T Consensus 166 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 166 --PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp --TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred --cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 3356678888889999999999999999988763 3457788999999999999999999999998866 56677788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 041936 256 VRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGG 335 (402)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 335 (402)
.+...+.+.|++++|...|++..+.... +..++..+...+...|++++|.+.++...... +.+...+..+...+...|
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCC
Confidence 8999999999999999999999987432 56788999999999999999999999988763 346788889999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 336 DYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
++++|...+++.++.. +-+..++..+..+|.+.|++++|.+.|++..+..|.+...|..+...|
T Consensus 320 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~ 383 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp CHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999998864 556788999999999999999999999999998888888888876654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=7.1e-19 Score=156.00 Aligned_cols=311 Identities=12% Similarity=0.018 Sum_probs=252.2
Q ss_pred HHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCC
Q 041936 81 AINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKD 160 (402)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (402)
+...+.+.|++++|.++++++... .|.+...+..+..+|.+.|++++|+..|++..+.+ +.+..+|..+..+|...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ-EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 345677889999999999998843 45667888889999999999999999999998876 6678899999999999999
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHH----------------------------------HHHHHHhcCChhHHHHHHHH
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNR----------------------------------VIKAFCESSDSSSAYSILAE 206 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~----------------------------------li~~~~~~~~~~~a~~~~~~ 206 (402)
+++|...+....+.. +.+...+.. ........+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence 999999999886543 222222222 22223334444555555555
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 041936 207 MDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNS 286 (402)
Q Consensus 207 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 286 (402)
..... +-+...+..+...+...|++++|...+++..+.. +.+...|..+...+...|++++|...+++....+.. +.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HH
Confidence 55442 3356778888889999999999999999988765 456778899999999999999999999999886433 66
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041936 287 VTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGL 366 (402)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (402)
..+..+...+...|++++|...|++..+... -+..++..+...+...|++++|.+.++...... +.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 7788899999999999999999999988632 246788999999999999999999999988865 77888999999999
Q ss_pred HcCCChHHHHHHHHHHHhcCCCChhhHHHHHhcC
Q 041936 367 AGASKVSEAKELIGLVKEKFTKNVDTWNEIEAGL 400 (402)
Q Consensus 367 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (402)
.+.|++++|++.|++..+..|.+...|..+-..|
T Consensus 316 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 349 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999998888888887766544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.4e-14 Score=121.33 Aligned_cols=253 Identities=11% Similarity=0.018 Sum_probs=162.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
...+.+.|++++|+..|+++.+.. |.+..+|..+..++...|++++|...|++..+.. +-+...|..+...|...|+
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--ccccccccccccccccccc
Confidence 344556666666666666666654 4456666666666666666666666666654432 2344556666666666666
Q ss_pred hhHHHHHHHHHHhCCCCCCHh----------------hHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhHHHHHH
Q 041936 197 SSSAYSILAEMDRKSIKPNAS----------------SFGALVAGFYKEEKYEDVNKVLQMMERYG-MKSGVSMYNVRIH 259 (402)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~~~~----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~ 259 (402)
+++|.+.++++.... |+.. .....+..+...+.+.++...+.+..+.. -..+..++..+..
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 666666666665432 1100 01111222334456777888887776543 1235567777888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHH
Q 041936 260 SLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYET 339 (402)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 339 (402)
.+...|++++|...|++....... +...|..+..+|...|++++|.+.|++..+... -+...+..+..+|.+.|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~ 258 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHRE 258 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCCCHHH
Confidence 888889999999999988776322 567788888889999999999999998887532 246678888889999999999
Q ss_pred HHHHHHHHHhC----------CCCCCHHHHHHHHHHHHcCCChHHHH
Q 041936 340 ALGFCKESIAK----------GWVPNFTTMKSLVTGLAGASKVSEAK 376 (402)
Q Consensus 340 a~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~a~ 376 (402)
|...|++.++. ........|..+-.++...|+.+.+.
T Consensus 259 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 259 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999887763 11222234555555655556655443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=7.5e-14 Score=120.39 Aligned_cols=254 Identities=11% Similarity=0.026 Sum_probs=184.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC
Q 041936 80 IAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK 159 (402)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (402)
.....+.+.|++++|...|+.+.. ..|.+...+..+..++...|++++|...|++..+.. +-+...|..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQ-QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 345557788888888888888873 345567777788888888888888888888887765 556778888888888888
Q ss_pred CHHHHHHHHHHchhhcCCCCCHH----------------HHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHH
Q 041936 160 DYKEVKRVFIEFPKTYGIKPDLD----------------TYNRVIKAFCESSDSSSAYSILAEMDRKS-IKPNASSFGAL 222 (402)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~p~~~----------------~~~~li~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l 222 (402)
++++|.+.+++.... .|+.. .....+..+...+.+.+|.+.+.+..+.. -..+..++..+
T Consensus 102 ~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 102 LQRQACEILRDWLRY---TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp CHHHHHHHHHHHHHT---STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred cccccccchhhHHHh---ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 888888888877543 22211 01112223344566778888888776543 23456778888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 041936 223 VAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNF 302 (402)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 302 (402)
...+...|++++|...|++..... +-+..+|..+..+|...|++++|.+.|++..+.... +...|..+..+|.+.|++
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~ 256 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAH 256 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCH
Confidence 899999999999999999988765 456778889999999999999999999998876322 567888899999999999
Q ss_pred HHHHHHHHHHHhCC----------CCCCHHhHHHHHHHHHccCChHHH
Q 041936 303 EEAKKFYRIMSNSG----------LSPNSSVYFTMVYFMCKGGDYETA 340 (402)
Q Consensus 303 ~~a~~~~~~m~~~~----------~~~~~~~~~~l~~~~~~~g~~~~a 340 (402)
++|+..|++.++.. .......|..+-.++...|+.+.+
T Consensus 257 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 257 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999887621 111223445555555555555444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=6.8e-10 Score=95.95 Aligned_cols=272 Identities=7% Similarity=-0.079 Sum_probs=135.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhhcCCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCC-CCC----HHHH
Q 041936 78 FSIAINKLSEANYFNGISQYLEELKTRPDLQN----ERFHAHSIILYGQANMTEHAVRTFKEMDEHKL-RHS----VGAF 148 (402)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~ 148 (402)
.......+...|++++|.+++++........+ ...+..+..+|...|++++|+..|++..+... .++ ...+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 33344555666677777777666553221111 12344455566666777777666666543210 011 2234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhh---cCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHhh
Q 041936 149 NALLLALTIAKDYKEVKRVFIEFPKT---YGIKPD---LDTYNRVIKAFCESSDSSSAYSILAEMDRKS----IKPNASS 218 (402)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~ 218 (402)
..+...+...|++..+...+...... .+.... ...+..+...+...|+++.+...+....... .......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 44555566666666666666554321 111111 1234445555666666666666666554431 1112233
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCC--CCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 041936 219 FGALVAGFYKEEKYEDVNKVLQMMERYG--MKSG----VSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP---NSVTY 289 (402)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~ 289 (402)
+......+...+++..+...+.+..... .... ...+..+...+...|++++|...++......... ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 4444455556666666666655443311 1111 1223444455556666666666666554432211 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHh
Q 041936 290 SHFIYGFCKDGNFEEAKKFYRIMSNS----GLSPN-SSVYFTMVYFMCKGGDYETALGFCKESIA 349 (402)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (402)
..+..++...|++++|...++..... +..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555666666666666666655421 22222 23455555666666666666666666554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=3.2e-10 Score=96.61 Aligned_cols=197 Identities=9% Similarity=0.012 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 041936 76 LAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQAN-MTEHAVRTFKEMDEHKLRHSVGAFNALLLA 154 (402)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (402)
..++.+...+.+.+.+++|++++++++. -.|.+...|.....++...| ++++|+..++...+.. +-+..+|+.+..+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~-lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIE-LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH-HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 3445555555666666666666666663 23445555555555555554 3666666666666554 4556666666666
Q ss_pred HHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC---
Q 041936 155 LTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEK--- 231 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~--- 231 (402)
+.+.|++++|+..++++++.. +.+...|..+...+.+.|++++|++.++++++.. +-+...|+.+..++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 666666666666666665432 3345566666666666666666666666666653 2244555555544444333
Q ss_pred ---HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 041936 232 ---YEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 232 ---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (402)
+++|++.+....+.. +.+...|+.+...+.. ...+++.+.++...+
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 345555555555443 2344444444433322 233445555554443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.35 E-value=4e-10 Score=95.83 Aligned_cols=191 Identities=9% Similarity=0.028 Sum_probs=142.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 041936 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLD 275 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (402)
..++|..+|++..+...+.+...+...+..+...|+++.|..+|+++.+........+|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888888887654555667777788888889999999999988875432334568888888888899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC-CC
Q 041936 276 EMLSKGMKPNSVTYSHFIYG-FCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG-WV 353 (402)
Q Consensus 276 ~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~ 353 (402)
++.+.+.. +...|...... +...|+.+.|..+|+.+.+.. ..+...|...+..+...|+++.|..+|++.++.. ..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 88876433 33444433332 344688899999999888762 2356788888888889999999999999988763 23
Q ss_pred CC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC
Q 041936 354 PN--FTTMKSLVTGLAGASKVSEAKELIGLVKEKFTK 388 (402)
Q Consensus 354 ~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 388 (402)
|. ...|...+..-...|+.+.+.++++++.+.++.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence 32 357888888778889999999999988886543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=1.7e-09 Score=93.30 Aligned_cols=267 Identities=9% Similarity=-0.008 Sum_probs=161.6
Q ss_pred HHhcCCChhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHhhc----CCC-CCchHHHHHHHHH
Q 041936 48 LLKSESNPEKILEICRAAALTPESHLD---RLAFSIAINKLSEANYFNGISQYLEELKT----RPD-LQNERFHAHSIIL 119 (402)
Q Consensus 48 ~l~~~~~~~~al~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~ 119 (402)
++...|++++|++.++......+..++ ...+..+...+...|++++|...++.... .+. ......+..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 345677888888888776533222221 23455666777777888888888877652 111 1112344455566
Q ss_pred HHhcCCHHHHHHHHHHhHh----CCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcC---CCCCHHHHHHHHH
Q 041936 120 YGQANMTEHAVRTFKEMDE----HKLRH---SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYG---IKPDLDTYNRVIK 189 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~----~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~p~~~~~~~li~ 189 (402)
+...|++..+...+..... .+... ....+..+...+...|+++.+...+........ .......+..+..
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 7778888888887776543 11111 123445566777778888888887777644321 1222344555666
Q ss_pred HHHhcCChhHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHH
Q 041936 190 AFCESSDSSSAYSILAEMDRK----SIKPN--ASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKS---GVSMYNVRIHS 260 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~~----g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~ 260 (402)
.+...++...+...+.+.... +..+. ...+..+...+...|++++|...++......... ....+..+...
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 677777888777777655432 11111 2234555666777788888888777665533211 23344556677
Q ss_pred HHccCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041936 261 LCKLRKCAEAKALLDEMLS----KGMKPN-SVTYSHFIYGFCKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 314 (402)
+...|++++|...++.... .+..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788888888888877653 233333 34566677778888888888888777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=6.8e-10 Score=94.55 Aligned_cols=190 Identities=8% Similarity=0.036 Sum_probs=87.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK-DYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS 195 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 195 (402)
...+.+.+.+++|+++++++.+.+ |-+...|+....++...| ++++|+..++..++.. +-+..+|..+...+.+.|
T Consensus 50 ~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~~~~~~l~ 126 (315)
T d2h6fa1 50 RAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVLVEWLR 126 (315)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHhHHHHhhc
Confidence 333444555555555555555544 444445555555554443 3555555555544332 223444555555555555
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC------HHH
Q 041936 196 DSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRK------CAE 269 (402)
Q Consensus 196 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~ 269 (402)
++++|++.++++.+.. +-+...|..+..++...|++++|++.++.+.+.+ +.+...|+.+...+.+.+. +++
T Consensus 127 ~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ 204 (315)
T d2h6fa1 127 DPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLER 204 (315)
T ss_dssp CCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHH
T ss_pred cHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHH
Confidence 5555555555555432 2234455555555555555555555555555543 2334444444433333332 344
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041936 270 AKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMS 313 (402)
Q Consensus 270 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 313 (402)
|.+.+.+..+.... +...|+.+...+.. ...+++.+.++...
T Consensus 205 ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 205 EVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHH
T ss_pred hHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHH
Confidence 55555544443211 33344433333322 22344444444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=3.1e-11 Score=104.19 Aligned_cols=225 Identities=8% Similarity=-0.098 Sum_probs=101.8
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHhhH-HHHHHHHhccCCHHHHHH
Q 041936 161 YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS--DSSSAYSILAEMDRKSIKPNASSF-GALVAGFYKEEKYEDVNK 237 (402)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~-~~l~~~~~~~~~~~~a~~ 237 (402)
+++|+..++...+.. +-+...|..+..++...+ ++++|...+.++.+.. +.+...+ ......+...+.+++|+.
T Consensus 89 ~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 89 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHH
Confidence 445555555554331 223334444444443333 3455555555554432 1223332 223344444555555555
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041936 238 VLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL 317 (402)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 317 (402)
.++.+.+.+ +-+...|+.+...+.+.|++++|...++..... .|+ .......+...+..+++...+........
T Consensus 166 ~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~ 239 (334)
T d1dcea1 166 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (334)
T ss_dssp HHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc
Confidence 555555443 334445555555555555554443333322221 000 01122223334444445555554444321
Q ss_pred CCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 318 SPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 318 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
++...+..+...+...|+.++|...+.+..+.. +.+...+..+..++.+.|+.++|.+.++++.+..|.+..-|+.|
T Consensus 240 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 240 -EPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp -CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred -chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 223333344444455555555555555555443 22344555555555566666666666666655544444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=2.5e-09 Score=90.85 Aligned_cols=185 Identities=12% Similarity=0.141 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCC-C-HHHHHHHHHHHHhcCChhHHHH
Q 041936 125 MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP-D-LDTYNRVIKAFCESSDSSSAYS 202 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~-~~~~~~li~~~~~~~~~~~a~~ 202 (402)
..++|..+|+...+...+.+...|...+..+...|+.+.|..+|+.+.+. .| + ...|...+....+.|+.+.|.+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~---~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH---hcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 34667777777665544555666677777777777777777777776532 23 2 3356677777777777777777
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHH-HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 041936 203 ILAEMDRKSIKPNASSFGALVAG-FYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKG 281 (402)
Q Consensus 203 ~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (402)
+|+++.+.+ +.+...|...... +...|+.+.|..+|+.+.+.. +.+...|...++.+.+.|+++.|..+|++.....
T Consensus 156 i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 156 IFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 777776654 2233333333322 234566777777777766653 4456667777777777777777777777766542
Q ss_pred -CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041936 282 -MKPN--SVTYSHFIYGFCKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 282 -~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 314 (402)
..|+ ...|...+.--...|+.+.+.++++++.+
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222 23556566655566777777777666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=1.7e-10 Score=95.47 Aligned_cols=96 Identities=6% Similarity=-0.077 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 041936 147 AFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGF 226 (402)
Q Consensus 147 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 226 (402)
+|..+..+|.+.|++++|+..|++.++.. +-+..+|..+..+|.+.|++++|++.|+++.+.. +-+..++..+..++
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence 44455555666666666666666654432 2344555555666666666666666666555542 22344555555555
Q ss_pred hccCCHHHHHHHHHHHHHC
Q 041936 227 YKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~ 245 (402)
...|++++|.+.|+...+.
T Consensus 116 ~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhh
Confidence 5556666666655555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.8e-09 Score=89.07 Aligned_cols=196 Identities=13% Similarity=-0.001 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 041936 111 RFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKA 190 (402)
Q Consensus 111 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 190 (402)
.++..+..+|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|+..|++..+.. +-+..++..+..+
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHHHH
Confidence 456666778888899999999999888766 6678888888889999999999999998887653 3345678888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH--
Q 041936 191 FCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCA-- 268 (402)
Q Consensus 191 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-- 268 (402)
+...|++++|.+.|+...+.. +.+......+..++.+.+..+.+..+........ ++...++ ++..+.......
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTL 190 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHH
Confidence 888899999999998887763 2344444444444455555555555555554432 2222222 222222221111
Q ss_pred --HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041936 269 --EAKALLDEMLSKGMKP-NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS 315 (402)
Q Consensus 269 --~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 315 (402)
.+...+...... .| ...+|..+...|...|++++|.+.|+..+..
T Consensus 191 ~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 191 MERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 111111111110 11 1234555666666667777777777766653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=3.1e-10 Score=97.83 Aligned_cols=275 Identities=7% Similarity=-0.063 Sum_probs=184.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHH---H-------HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHH
Q 041936 80 IAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSI---I-------LYGQANMTEHAVRTFKEMDEHKLRHSVGAFN 149 (402)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li---~-------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 149 (402)
.++......+..++|.++++.+... .|.+...|+..- . .+...|++++|+.+++...+.+ +.+...|.
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~-~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGA-NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 3333333334457888888887732 233333332221 2 2334456788999999988765 66778888
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHchhhcCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 041936 150 ALLLALTIAK--DYKEVKRVFIEFPKTYGIKPDLDTYN-RVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGF 226 (402)
Q Consensus 150 ~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 226 (402)
.+..++...+ ++++|...++++.+.. +++...+. .....+...+.+++|++.++.+.+.. +-+...|+.+..++
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~ 188 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhC--chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 8877777665 4789999998886652 44555554 44466777899999999999888875 34677888888889
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041936 227 YKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAK 306 (402)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 306 (402)
...|++++|...+....+.. |. .......+...+..+++...+........ ++...+..+...+...|+.++|.
T Consensus 189 ~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHH
Confidence 88888887765554433321 11 11233344555667778888887776632 34555666777778888999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041936 307 KFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 367 (402)
Q Consensus 307 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (402)
..+.+..+... -+...+..+...+...|+.++|.+.++++.+.. |.+...|..+...+.
T Consensus 263 ~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 263 KELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHHHHHHHh
Confidence 99988877532 245677888888999999999999999998864 234455565554444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=4.6e-07 Score=70.50 Aligned_cols=120 Identities=15% Similarity=0.040 Sum_probs=54.2
Q ss_pred HHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHH
Q 041936 155 LTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYED 234 (402)
Q Consensus 155 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 234 (402)
+...|+++.|++.|.++. +|+..+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++
T Consensus 15 ~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 344444444444444431 2334444444444444444444444444444432 2233444444444444555555
Q ss_pred HHHHHHHHHHCCCC--------------C-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 235 VNKVLQMMERYGMK--------------S-GVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 235 a~~~~~~~~~~~~~--------------~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
|.+.|++....... . ...++..+..++.+.|++++|.+.+......
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 54444444321100 0 0122334444555666666666666655544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=5.5e-07 Score=70.04 Aligned_cols=123 Identities=14% Similarity=0.075 Sum_probs=76.7
Q ss_pred HHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChh
Q 041936 119 LYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSS 198 (402)
Q Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 198 (402)
.+...|+++.|++.|.++. +++..+|..+..+|...|++++|++.|++.++.. +-+...|..+..+|.+.|+++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhccHH
Confidence 3556666666666666542 4556666666666666777777777666665542 334556666666666667777
Q ss_pred HHHHHHHHHHhCC------------C--CCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 041936 199 SAYSILAEMDRKS------------I--KPN-ASSFGALVAGFYKEEKYEDVNKVLQMMERYGM 247 (402)
Q Consensus 199 ~a~~~~~~~~~~g------------~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 247 (402)
+|.+.|++..... . .++ ..++..+..++.+.|++++|.+.+....+...
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 7766666655421 0 001 23455666777888888888888887776543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.74 E-value=3.6e-07 Score=76.35 Aligned_cols=165 Identities=7% Similarity=-0.006 Sum_probs=85.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCC----CHHHHHH
Q 041936 116 SIILYGQANMTEHAVRTFKEMDEH----KLRH-SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKP----DLDTYNR 186 (402)
Q Consensus 116 li~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~ 186 (402)
....|...|++++|.+.|.+..+. +-++ ...+|+.+..+|.+.|++++|...++...+...-.. ...++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 345677777888888877776542 1111 234667777777777777777777766533211011 1233444
Q ss_pred HHHHHHh-cCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh------hhH
Q 041936 187 VIKAFCE-SSDSSSAYSILAEMDRK----SIKP-NASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGV------SMY 254 (402)
Q Consensus 187 li~~~~~-~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~ 254 (402)
+...|.. .|++++|.+.+++..+. +..+ -..++..+...+...|++++|.+.|+++......... ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 4545533 46677776666655431 1111 1233555566666666666666666665543211110 112
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC
Q 041936 255 NVRIHSLCKLRKCAEAKALLDEMLSK 280 (402)
Q Consensus 255 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (402)
...+..+...|+++.|...+++..+.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 22333444455566665555555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=6.8e-07 Score=74.62 Aligned_cols=202 Identities=9% Similarity=-0.031 Sum_probs=134.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhhc----CCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC----CC-CCCHH
Q 041936 77 AFSIAINKLSEANYFNGISQYLEELKT----RPDL-QNERFHAHSIILYGQANMTEHAVRTFKEMDEH----KL-RHSVG 146 (402)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~ 146 (402)
.|......+...+++++|.+.|.+... .+.+ .....|..+..+|.+.|++++|.+.++...+. |- .....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 355667778889999999999988762 2222 22457888889999999999999999976542 21 11234
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHchhh---cCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-----
Q 041936 147 AFNALLLALTI-AKDYKEVKRVFIEFPKT---YGIKPD-LDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNA----- 216 (402)
Q Consensus 147 ~~~~l~~~~~~-~~~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~----- 216 (402)
++..+...|.. .|++++|++.|++..+. .+.++. ..++..+...+...|++++|.+.|+++.........
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 56666767754 69999999999887432 121221 345788899999999999999999998875322111
Q ss_pred -hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC---hhhHHHHHHHHHc--cCCHHHHHHHHHHHH
Q 041936 217 -SSFGALVAGFYKEEKYEDVNKVLQMMERYGMK-SG---VSMYNVRIHSLCK--LRKCAEAKALLDEML 278 (402)
Q Consensus 217 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~ll~~~~~--~~~~~~a~~~~~~~~ 278 (402)
..+...+..+...|+++.|...+++..+.... ++ ......++.++-. .+.+++|+..|+.+.
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 12344555677889999999999988765311 11 2234455555544 234666666665443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=2.4e-07 Score=65.66 Aligned_cols=102 Identities=16% Similarity=0.034 Sum_probs=62.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 041936 293 IYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKV 372 (402)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 372 (402)
...+...|++++|+..|.+.++... -+...|..+..+|...|++++|...+++.++.+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 4455566666666666666665422 245556666666666666666666666666654 45666666666666666666
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHH
Q 041936 373 SEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
++|+..|++..+..|.+...+..+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l 111 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGL 111 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 666666666666655555555444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.5e-06 Score=61.39 Aligned_cols=91 Identities=12% Similarity=-0.057 Sum_probs=55.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..++..++.. +.+...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc--cchhhHHHHHHHHHHHccC
Confidence 344556666666666666666554 5555666666666666666666666666665432 3455556666666666666
Q ss_pred hhHHHHHHHHHHhC
Q 041936 197 SSSAYSILAEMDRK 210 (402)
Q Consensus 197 ~~~a~~~~~~~~~~ 210 (402)
+++|+..|++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.58 E-value=9.8e-05 Score=60.05 Aligned_cols=221 Identities=10% Similarity=-0.004 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHchhhcCCCCCHHHHHHH
Q 041936 112 FHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTI----AKDYKEVKRVFIEFPKTYGIKPDLDTYNRV 187 (402)
Q Consensus 112 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 187 (402)
.+..+...+.+.+++++|++.|++..+.| +...+..|..+|.. ..+...|..++....+. + +......+
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-~---~~~a~~~l 76 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-c---ccchhhcc
Confidence 34445555666777777777777776654 34445555556654 45677777777666332 1 33334444
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 041936 188 IKAFCE----SSDSSSAYSILAEMDRKSIKPNASSFGALVAGFY----KEEKYEDVNKVLQMMERYGMKSGVSMYNVRIH 259 (402)
Q Consensus 188 i~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 259 (402)
...+.. ..+.+.|...++...+.|.. .....+...+. .......+...+...... .+...+..+..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~ 150 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGS 150 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhh
Confidence 333332 45566777777777666532 22222222222 234455566666655543 34445555555
Q ss_pred HHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041936 260 SLCK----LRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCK----DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFM 331 (402)
Q Consensus 260 ~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 331 (402)
.+.. ..+...+...++...+.| +......+...|.. ..++++|..+|....+.| ++..+..|...|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y 224 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 224 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence 5553 345566666666666554 44444445444443 456777777777776665 344455555555
Q ss_pred Hc----cCChHHHHHHHHHHHhCC
Q 041936 332 CK----GGDYETALGFCKESIAKG 351 (402)
Q Consensus 332 ~~----~g~~~~a~~~~~~~~~~~ 351 (402)
.+ ..+.++|.++|++..+.|
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCCccCHHHHHHHHHHHHHCc
Confidence 44 236677777777776665
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=1.5e-06 Score=65.32 Aligned_cols=122 Identities=8% Similarity=0.013 Sum_probs=94.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 041936 254 YNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK 333 (402)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 333 (402)
+......|.+.|++++|...|++..+.... +...|..+..+|...|++++|+..|+..++... -+...|..+..++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHH
Confidence 455667788999999999999999987433 678899999999999999999999999998642 256789999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHcCCChHHHHHH
Q 041936 334 GGDYETALGFCKESIAKGWVPNFTTMKSLVTG--LAGASKVSEAKEL 378 (402)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~ 378 (402)
.|++++|...+++..... +-+...+..+..+ ....+.+++|...
T Consensus 91 ~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999998864 3455555554433 2334445555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.54 E-value=1.8e-07 Score=73.43 Aligned_cols=99 Identities=15% Similarity=0.067 Sum_probs=82.5
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhHHHH
Q 041936 249 SGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSP-NSSVYFTM 327 (402)
Q Consensus 249 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l 327 (402)
|+...+......|.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|+..|...++. .| +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence 6666777788889999999999999998887643 26778888999999999999999999998874 34 46788889
Q ss_pred HHHHHccCChHHHHHHHHHHHhC
Q 041936 328 VYFMCKGGDYETALGFCKESIAK 350 (402)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~~~ 350 (402)
..+|...|++++|...|+++.+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999888764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.2e-06 Score=65.77 Aligned_cols=91 Identities=13% Similarity=-0.014 Sum_probs=56.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
...|.+.|++++|+..|++..+.+ +.+...|..+..+|...|++++|+..|++.++.. +-+..+|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHcCC
Confidence 344556666666666666666655 5556666666666666666666666666665432 3344566666666666666
Q ss_pred hhHHHHHHHHHHhC
Q 041936 197 SSSAYSILAEMDRK 210 (402)
Q Consensus 197 ~~~a~~~~~~~~~~ 210 (402)
+++|...+++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 66666666666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.49 E-value=1.2e-06 Score=68.63 Aligned_cols=99 Identities=11% Similarity=-0.008 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 041936 179 PDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRI 258 (402)
Q Consensus 179 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 258 (402)
|+...+......+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+...+.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 566666677777888888888888887777653 4466777777888888888888888888777654 34566777777
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 041936 259 HSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~ 279 (402)
.+|.+.|++++|...|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888877665
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.42 E-value=0.00032 Score=58.60 Aligned_cols=131 Identities=6% Similarity=0.002 Sum_probs=56.9
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHH
Q 041936 41 KTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILY 120 (402)
Q Consensus 41 ~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 120 (402)
....+.+.+...|.++.|..++.... -|..++..+.+.++++.|.+++.+. .+..+|..+...+
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l 79 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 79 (336)
T ss_dssp -------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHH
Confidence 33445555555556666655554331 2455555555555555555555443 1233455555555
Q ss_pred HhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhc
Q 041936 121 GQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCES 194 (402)
Q Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 194 (402)
.+......| .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTT
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHHHHh
Confidence 554444332 1112222334444445555555666666666555544321 133444455555555554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.40 E-value=2.1e-06 Score=60.04 Aligned_cols=89 Identities=9% Similarity=-0.003 Sum_probs=57.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcC
Q 041936 116 SIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESS 195 (402)
Q Consensus 116 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 195 (402)
....+.+.|++++|+..|++..+.+ +-+..+|..+..++.+.|++++|+..|++.++.. +.+...|..+...|...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCC
Confidence 3445666677777777777766654 4456666667777777777777777776665432 334566666666666677
Q ss_pred ChhHHHHHHHHH
Q 041936 196 DSSSAYSILAEM 207 (402)
Q Consensus 196 ~~~~a~~~~~~~ 207 (402)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 777776666654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.37 E-value=0.00035 Score=56.65 Aligned_cols=223 Identities=10% Similarity=-0.029 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhH
Q 041936 144 SVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCE----SSDSSSAYSILAEMDRKSIKPNASSF 219 (402)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 219 (402)
|+..+..|...+...+++++|+++|++..+. | +...+..|...|.. ..+...|..++....+.+ +....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~ 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 73 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence 4566777888888999999999999998543 3 56677777777776 668899999999988876 33444
Q ss_pred HHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----ccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041936 220 GALVAGFY----KEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLC----KLRKCAEAKALLDEMLSKGMKPNSVTYSH 291 (402)
Q Consensus 220 ~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 291 (402)
..+...+. ...+.+.|...++...+.|. +.. ...+...+. .......+...+......+ +...+..
T Consensus 74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~-~~a--~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 147 (265)
T d1ouva_ 74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKY-AEG--CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 147 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHH--HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHhhhhhhhh-hhH--HHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhh
Confidence 44444433 35678899999998888762 222 222222222 2456777888888776643 5666777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041936 292 FIYGFCK----DGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK----GGDYETALGFCKESIAKGWVPNFTTMKSLV 363 (402)
Q Consensus 292 l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (402)
+...|.. ..+...+..++....+.| +......+...|.. ..++++|..+|++..+.| ++..+..|.
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG 221 (265)
T d1ouva_ 148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 221 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence 7777775 456778888888888765 45555556555654 568999999999999987 456666777
Q ss_pred HHHHc----CCChHHHHHHHHHHHhc
Q 041936 364 TGLAG----ASKVSEAKELIGLVKEK 385 (402)
Q Consensus 364 ~~~~~----~g~~~~a~~~~~~~~~~ 385 (402)
..|.+ ..+.++|.+.|++..+.
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 77765 44789999999998775
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=3e-06 Score=60.09 Aligned_cols=94 Identities=10% Similarity=0.142 Sum_probs=44.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHhHHHHHHHH
Q 041936 256 VRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGN---FEEAKKFYRIMSNSGLSPN-SSVYFTMVYFM 331 (402)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~ 331 (402)
.+++.+...+++++|.+.|++....+.. +..++..+..++.+.++ +++|+.+++++...+..|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 3444455555555555555555554222 44444445555544332 2345555555554332222 12344455555
Q ss_pred HccCChHHHHHHHHHHHhC
Q 041936 332 CKGGDYETALGFCKESIAK 350 (402)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~ 350 (402)
.+.|++++|.+.|+++++.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 5555555555555555543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.28 E-value=3.8e-06 Score=58.71 Aligned_cols=27 Identities=11% Similarity=-0.084 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHH
Q 041936 252 SMYNVRIHSLCKLRKCAEAKALLDEML 278 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (402)
.+|..+..++.+.|++++|+..|++..
T Consensus 51 ~a~~~lg~~~~~~~~~~~A~~~~~~al 77 (112)
T d1hxia_ 51 EAWRSLGLTQAENEKDGLAIIALNHAR 77 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhHHHhhccccccc
Confidence 333333333333333333333333333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=3.2e-06 Score=59.94 Aligned_cols=93 Identities=22% Similarity=0.192 Sum_probs=47.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRK---CAEAKALLDEMLSKGMKPN-SVTYSHFIYGF 296 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 296 (402)
.+++.+...+++++|++.|++....+ +.+..++..+..++.+.++ .++|+.+++++...+..|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34445555555555555555555544 3444555555555554333 2345555555554432222 12444555555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 041936 297 CKDGNFEEAKKFYRIMSN 314 (402)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~ 314 (402)
.+.|++++|.+.|+++.+
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 566666666666665555
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=0.00044 Score=57.74 Aligned_cols=240 Identities=10% Similarity=0.053 Sum_probs=150.0
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHH
Q 041936 73 LDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALL 152 (402)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 152 (402)
|+..--..+...|.+.|.++.|..++..+. -+..++..+.+.++++.|.+++.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 355556678888899999999999999865 2667888889999999998888754 3566888888
Q ss_pred HHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH
Q 041936 153 LALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKY 232 (402)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 232 (402)
..+.+......+.-+ . .....+......++..|-..|.+++...+++..... -..+...++.++..|++.+ .
T Consensus 77 ~~l~~~~e~~la~i~-----~-~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 77 FACVDGKEFRLAQMC-----G-LHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHTTCHHHHHHT-----T-TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHhCcHHHHHHHH-----H-HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-h
Confidence 898888776554322 1 122345566678999999999999999999987654 2456778888999888764 3
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHH
Q 041936 233 EDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK--------GMKPNSVTYSHFIYGFCKDGNFEE 304 (402)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~ 304 (402)
++..+.+... + +..-...++..|.+.+-++++.-++..+... ...++..-....+..+.+.++.+.
T Consensus 149 ~kl~e~l~~~---s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~ 222 (336)
T d1b89a_ 149 QKMREHLELF---W---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVEL 222 (336)
T ss_dssp HHHHHHHHHH---S---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHhc---c---ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHH
Confidence 4444443332 1 1222445778888888888888887764321 012233334455666677777776
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHH
Q 041936 305 AKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCK 345 (402)
Q Consensus 305 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 345 (402)
..++.....+. . +...+.++......-+..+..+.++
T Consensus 223 ~~~~i~~yL~~--~--p~~i~~lL~~v~~~~d~~r~V~~~~ 259 (336)
T d1b89a_ 223 YYRAIQFYLEF--K--PLLLNDLLMVLSPRLDHTRAVNYFS 259 (336)
T ss_dssp HHHHHHHHHHH--C--GGGHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHc--C--HHHHHHHHHHhccCCCHHHHHHHHH
Confidence 66666665552 2 3445666666666666666665554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=1.7e-05 Score=60.00 Aligned_cols=117 Identities=12% Similarity=-0.072 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041936 252 SMYNVRIHSLCKLRKCAEAKALLDEMLSKGM-KPN-------------SVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGL 317 (402)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 317 (402)
..+......+.+.|++++|+..|++.+..-. .+. ..+|+.+..+|.+.|++++|+..++..+....
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 3455566778889999999999998876411 111 13466677788888888888888888887532
Q ss_pred CCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 041936 318 SPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGAS 370 (402)
Q Consensus 318 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (402)
-+...+..+..+|...|++++|...|+++.+.. +-+......+.....+.+
T Consensus 94 -~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 94 -NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHH
T ss_pred -cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 257788888888888888888888888888764 335555555544443333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=4.6e-05 Score=57.48 Aligned_cols=61 Identities=8% Similarity=-0.044 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 184 YNRVIKAFCESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 184 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
|+.+..+|.+.|++++|+..++..++.. +.+..++..+..+|...|++++|...|+...+.
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4444455555555555555555555432 224445555555555555555555555555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.16 E-value=4.4e-05 Score=56.41 Aligned_cols=74 Identities=19% Similarity=0.133 Sum_probs=56.4
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 322 SVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
.+|..+..+|.+.|++++|++.++++++.+ +.+..+|..+..++...|++++|...|+...+..|.|...+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l 141 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 356667777888888888888888887765 55777888888888888888888888888887777776666544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=4e-05 Score=54.72 Aligned_cols=94 Identities=7% Similarity=0.029 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC-----HHHHHHHHH
Q 041936 115 HSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD-----LDTYNRVIK 189 (402)
Q Consensus 115 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~ 189 (402)
.+...+.+.|++++|+..|.+.++.+ +.+...+..+..+|.+.|++++|++.++++++-..-.+. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 44555667777777777777776665 556667777777777777777777777766432100111 124445555
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 041936 190 AFCESSDSSSAYSILAEMDR 209 (402)
Q Consensus 190 ~~~~~~~~~~a~~~~~~~~~ 209 (402)
.+...+++++|++.|++...
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 56666666666666665554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=3.7e-05 Score=54.87 Aligned_cols=92 Identities=12% Similarity=0.250 Sum_probs=42.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHHHH
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMK-PN-----SVTYSHFIY 294 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~-----~~~~~~l~~ 294 (402)
.+...+.+.|++++|+..|.+.++.+ +.+...|..+..+|.+.|++++|+..++++++.... +. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554443 234444445555555555555555555554432100 00 123334444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 041936 295 GFCKDGNFEEAKKFYRIMS 313 (402)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~ 313 (402)
.+...+++++|...|....
T Consensus 88 ~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 4444555555555554444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=2.5e-06 Score=76.93 Aligned_cols=227 Identities=10% Similarity=-0.010 Sum_probs=119.9
Q ss_pred hHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHc
Q 041936 93 GISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSV-GAFNALLLALTIAKDYKEVKRVFIEF 171 (402)
Q Consensus 93 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 171 (402)
+|.+.+++.... .+.....+..+..++...|++++| |+++...+ |+. ..++.. ..+.+ ..+..+.+.++..
T Consensus 4 eA~q~~~qA~~l-~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e-~~Lw~-~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVL-KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVE-QDLWN-HAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHH-HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHH-HHHHH-HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHH-HHHHH-HHHHHHHHHHHHh
Confidence 577788777631 122233445566678888888776 66665432 221 112111 11111 1234566666665
Q ss_pred hhhcCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 041936 172 PKTYGIKPDLDTYNRVIKAF--CESSDSSSAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKS 249 (402)
Q Consensus 172 ~~~~~~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 249 (402)
.+. ...++..-.......+ ...+.++.++..++...+.. +++...+..+...+.+.|+.++|...+.......
T Consensus 76 ~k~-~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 76 AKN-RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HSC-SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred ccc-ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 332 2222322222222222 22344555555444443332 3355677888888899999999998887765432
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 041936 250 GVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVY 329 (402)
Q Consensus 250 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 329 (402)
...++..+...+...|++++|...|++..+.... +...|+.+...+...|+..+|...|.+..... .|-..++..|..
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 1356777888899999999999999999987332 56799999999999999999999999998864 356778888877
Q ss_pred HHHcc
Q 041936 330 FMCKG 334 (402)
Q Consensus 330 ~~~~~ 334 (402)
.+.+.
T Consensus 229 ~~~~~ 233 (497)
T d1ya0a1 229 ALSKA 233 (497)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=6.7e-05 Score=56.48 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=49.7
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHHH
Q 041936 322 SVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEIE 397 (402)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 397 (402)
..|..+..++.+.|++++|+..++++++.. +.+...|..+..++.+.|++++|++.|+.+.+..|.|...+..+.
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~ 152 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345556666677777777777777776654 456666777777777777777777777777776666665555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.98 E-value=0.00022 Score=53.47 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=25.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 041936 221 ALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (402)
.+..+|.+.|++++|+..++...+.. +.+..+|..+..++...|++++|...|+++.+
T Consensus 69 Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 69 NLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444433 33344444444444444444444444444444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.94 E-value=9.4e-05 Score=55.62 Aligned_cols=63 Identities=8% Similarity=0.013 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 146 GAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
..|..+..++.+.|++++|+..+++.++.. +.+..+|..+..++...|++++|.+.|++..+.
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~--p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhh--hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344444555555555555555555554321 233445555555555555555555555555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.91 E-value=0.00014 Score=55.15 Aligned_cols=70 Identities=16% Similarity=0.077 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHhh
Q 041936 147 AFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDR-----KSIKPNASS 218 (402)
Q Consensus 147 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 218 (402)
.+..+...+...|++++|+..++.+.+.. +-+...|..++.++...|+..+|++.|+++.+ .|+.|+..+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 44455555555555555555555554432 33455555555555555555555555555422 355555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.90 E-value=0.0002 Score=53.66 Aligned_cols=132 Identities=9% Similarity=0.010 Sum_probs=90.2
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041936 251 VSMYNVRIHSLCKLRKCAEAKALLDEMLSK---GMKPNS-----------VTYSHFIYGFCKDGNFEEAKKFYRIMSNSG 316 (402)
Q Consensus 251 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 316 (402)
...+.-....+.+.|++.+|...|++.... ...++. ..|..+..+|.+.|++++|+..++..+...
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 445666777888999999999999887652 111111 235557777888899999999998888753
Q ss_pred CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHHh
Q 041936 317 LSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKV-SEAKELIGLVKE 384 (402)
Q Consensus 317 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 384 (402)
. .+...|..+..++...|++++|...|+++++.. +.+......+-....+.+.. +...+++..|.+
T Consensus 95 p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 95 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 2 357788888888888999999999999888764 44555555554444444333 234455555444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.89 E-value=0.00029 Score=51.79 Aligned_cols=62 Identities=15% Similarity=-0.053 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 147 AFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 147 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
+|+.+..+|.+.|++++|++.++..++.. +.+..+|..+..++...|++++|...|++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~--p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc--chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444455555555555555555544332 334445555555555555555555555555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=6.4e-06 Score=74.11 Aligned_cols=227 Identities=13% Similarity=0.029 Sum_probs=124.0
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHH
Q 041936 128 HAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDL-DTYNRVIKAFCESSDSSSAYSILAE 206 (402)
Q Consensus 128 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~ 206 (402)
+|.+.|++..+.. +.....+..+..++...+++++| |++++.. .|+. ..++...... ...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKVEQDLW--NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTHHHHHH--HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhHHHHHH--HHHHHHHHHHHHH
Confidence 6778888877643 33345666777788888888776 6666543 2321 1111111111 1124556777777
Q ss_pred HHhCCCCCCHhhHHHHHHHH--hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 041936 207 MDRKSIKPNASSFGALVAGF--YKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKGMKP 284 (402)
Q Consensus 207 ~~~~g~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 284 (402)
..+....++..-....+..+ ...+.++.++..++...+.. +++...+..+...+.+.|+.++|...++......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 66554333433222222222 22344555555444433332 3455667777788888889888888877765431
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041936 285 NSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVT 364 (402)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (402)
...++..+...+...|++++|...|.+..+... -+...|+.+...+...|+..+|...|.+.+... +|-..++..|..
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 135677788888999999999999999888532 246789999999999999999999999998876 677888888877
Q ss_pred HHHcC
Q 041936 365 GLAGA 369 (402)
Q Consensus 365 ~~~~~ 369 (402)
.+.+.
T Consensus 229 ~~~~~ 233 (497)
T d1ya0a1 229 ALSKA 233 (497)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.79 E-value=0.00044 Score=52.25 Aligned_cols=57 Identities=9% Similarity=-0.032 Sum_probs=24.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 041936 220 GALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 277 (402)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (402)
..+..++...|++++|...++++.... +-+...|..++.+|.+.|+.++|++.|+++
T Consensus 71 ~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 71 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 334444444444444444444444433 333444444444444444444444444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.76 E-value=3.2e-05 Score=62.78 Aligned_cols=122 Identities=11% Similarity=0.048 Sum_probs=68.4
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHHhcCChh
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPD-LDTYNRVIKAFCESSDSS 198 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~ 198 (402)
..+.|++++|+..+++..+.. |.+...+..+...|+..|++++|...|+...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 345677888888888877766 677777778888888888888888888777544 343 333333333332222222
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 041936 199 SAYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERY 245 (402)
Q Consensus 199 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (402)
++..-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 21111110001111222333344455566677777777777776554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.72 E-value=0.00013 Score=53.23 Aligned_cols=72 Identities=8% Similarity=-0.067 Sum_probs=40.6
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAK----------DYKEVKRVFIEFPKTYGIKPDLDTYNRVIK 189 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 189 (402)
|-+.+.+++|+..|+...+.. |.+..++..+..++...+ .+++|+..|++.++.. +.+..+|..+..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHH
Confidence 344556777777777777665 666667766666665433 3345555555554332 333445555555
Q ss_pred HHHhc
Q 041936 190 AFCES 194 (402)
Q Consensus 190 ~~~~~ 194 (402)
+|...
T Consensus 84 ~y~~~ 88 (145)
T d1zu2a1 84 AYTSF 88 (145)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.66 E-value=0.0001 Score=53.81 Aligned_cols=115 Identities=16% Similarity=0.080 Sum_probs=72.1
Q ss_pred HhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHh----------cCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHH
Q 041936 86 SEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQ----------ANMTEHAVRTFKEMDEHKLRHSVGAFNALLLAL 155 (402)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (402)
-+.+.+++|.+.++.... ..|.+...+..+..++.. .+.+++|+..|++..+.+ |.+..+|..+..+|
T Consensus 8 ~r~~~fe~A~~~~e~al~-~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYK-SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHh-hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 344557777777777763 345566666666665553 345678999999998876 77888999898888
Q ss_pred HHcCC-----------HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041936 156 TIAKD-----------YKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRKS 211 (402)
Q Consensus 156 ~~~~~-----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 211 (402)
...|+ +++|.+.|++.++. .|+...|..-+..+ .+|.+++.+..+.|
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l---~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhccccc---CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 77653 45566666655433 45544444333332 34455555555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.65 E-value=6.2e-05 Score=61.00 Aligned_cols=124 Identities=11% Similarity=0.016 Sum_probs=85.1
Q ss_pred HHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 041936 84 KLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKE 163 (402)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 163 (402)
-..+.|++++|+..+++.. +..|.+...+..+...++..|++++|...|+...+.. +.+...+..+...+...+..++
T Consensus 5 ~aL~~G~l~eAl~~l~~al-~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAI-KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHH-HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHH
Confidence 3456789999999999888 4467788888899999999999999999999988765 4455566655555554444444
Q ss_pred HHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041936 164 VKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEMDRK 210 (402)
Q Consensus 164 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 210 (402)
+..-.... ...+-+++...+......+...|+.++|.+.++++.+.
T Consensus 83 a~~~~~~~-~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATA-KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCE-ECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhh-hcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 33322211 11111233344555566778889999999999888765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.41 E-value=0.0026 Score=46.57 Aligned_cols=90 Identities=8% Similarity=-0.036 Sum_probs=42.2
Q ss_pred HHHHcCCHHHHHHHHHHchhhcCCCCC----------HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCC---
Q 041936 154 ALTIAKDYKEVKRVFIEFPKTYGIKPD----------LDTYNRVIKAFCESSDSSSAYSILAEMDRK-----SIKPN--- 215 (402)
Q Consensus 154 ~~~~~~~~~~a~~~~~~~~~~~~~~p~----------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----g~~~~--- 215 (402)
.+...|++++|+..|++.++...-.|+ ...|+.+..+|.+.|++++|.+.+++.++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344455566665555555432111111 234555555555556665555555554431 01111
Q ss_pred --HhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041936 216 --ASSFGALVAGFYKEEKYEDVNKVLQMME 243 (402)
Q Consensus 216 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (402)
...+..+..+|...|++++|+..|++..
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1134445555555555555555555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00079 Score=44.72 Aligned_cols=70 Identities=9% Similarity=0.005 Sum_probs=33.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCC-----CCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHH
Q 041936 326 TMVYFMCKGGDYETALGFCKESIAKG-----WVP-NFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNE 395 (402)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 395 (402)
.+...+.+.|++++|..++++.++.. ..+ ...++..+..++.+.|++++|+..++++.+..|.+...++.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 34444455555555555555444320 011 12344555555555555555555555555554544444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.22 E-value=0.0042 Score=45.39 Aligned_cols=64 Identities=14% Similarity=0.071 Sum_probs=37.0
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHhC-----CCCCC-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 041936 322 SVYFTMVYFMCKGGDYETALGFCKESIAK-----GWVPN-----FTTMKSLVTGLAGASKVSEAKELIGLVKEK 385 (402)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 385 (402)
..|+.+..+|...|++++|...+++.++. ...++ ...+..+..+|.+.|++++|.+.|++..+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666655431 11111 123455667777777777777777776553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.003 Score=41.73 Aligned_cols=61 Identities=8% Similarity=-0.079 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhhcC------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 041936 79 SIAINKLSEANYFNGISQYLEELKTR------PDLQNERFHAHSIILYGQANMTEHAVRTFKEMDEH 139 (402)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 139 (402)
-.+...+.+.|++++|...|++.... .......++..+..++.+.|++++|+..++++.+.
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34444444455555555544444310 01111233444444444444444444444444443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.98 E-value=0.024 Score=38.52 Aligned_cols=141 Identities=12% Similarity=0.126 Sum_probs=95.0
Q ss_pred HHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhH
Q 041936 120 YGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSS 199 (402)
Q Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 199 (402)
+.-.|..++..+++.+... +.+..-||.++--....-+-+-..++++.+-+-..+.| .++...
T Consensus 12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 4456778888888887765 45666777777777777777777888777744332222 222222
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 041936 200 AYSILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLS 279 (402)
Q Consensus 200 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (402)
....+-.+ ..+...+...+..+..+|+-++-.+++..+.+.+ +++....-.+..+|.+.|+..++.+++.+.-+
T Consensus 75 vv~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 75 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 22222211 1244566677778888888888888888877655 67777788888888888888888888888888
Q ss_pred CCCC
Q 041936 280 KGMK 283 (402)
Q Consensus 280 ~~~~ 283 (402)
.|+.
T Consensus 149 ~G~K 152 (161)
T d1wy6a1 149 KGEK 152 (161)
T ss_dssp TTCH
T ss_pred HhHH
Confidence 8764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.57 E-value=0.062 Score=37.54 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=8.0
Q ss_pred ChHHHHHHHHHHHhCC
Q 041936 336 DYETALGFCKESIAKG 351 (402)
Q Consensus 336 ~~~~a~~~~~~~~~~~ 351 (402)
+.++|.+++++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4455555555554444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.36 E-value=0.085 Score=36.78 Aligned_cols=109 Identities=6% Similarity=-0.084 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCChHHHH
Q 041936 266 KCAEAKALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCK----GGDYETAL 341 (402)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 341 (402)
|+++|.+.|++..+.|.. .....+. .....+.++|.+++.+..+.| +......|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 566777777777666522 2222222 234467788888888888765 34445555555543 45789999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHhc
Q 041936 342 GFCKESIAKGWVPNFTTMKSLVTGLAG----ASKVSEAKELIGLVKEK 385 (402)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 385 (402)
++|++..+.| ++.....|...|.. ..+.++|.++|+...+.
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 9999999877 44555556666654 46899999999998775
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.29 E-value=0.081 Score=35.88 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 041936 291 HFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKG 351 (402)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (402)
..+....+.|+-+.-.++++.+.+. -+|++...-.+..+|.+.|...++-+++.++.+.|
T Consensus 91 lALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 91 KALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3344444444444444444443332 23344444444444444444444444444444444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.54 E-value=0.11 Score=33.30 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChhhHHHH
Q 041936 337 YETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVDTWNEI 396 (402)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 396 (402)
.-++.+-+..+...++.|++....+.+++|.+.+++..|.++|+-++.+..++...|..+
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yi 81 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 81 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 334444444444455555555555555555555555555555555555544334444443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.00 E-value=0.36 Score=32.75 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCChh
Q 041936 337 YETALGFCKESIAKGWVPNF-TTMKSLVTGLAGASKVSEAKELIGLVKEKFTKNVD 391 (402)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 391 (402)
.+++..++++..+.+ +.+. ..+-.|.-+|.+.|++++|.+.++.+.+..|.|..
T Consensus 54 ~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 54 ERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp HHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 345555555555432 2221 33344445555555555555555555555444433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.28 E-value=2.9 Score=35.52 Aligned_cols=317 Identities=8% Similarity=-0.012 Sum_probs=169.8
Q ss_pred cchHHHHHHHhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc--CCcchHHHHHHHhhcCCCCC-chHHHHHH
Q 041936 40 DKTRAALTLLKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEA--NYFNGISQYLEELKTRPDLQ-NERFHAHS 116 (402)
Q Consensus 40 ~~~~~~l~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 116 (402)
..+..+.+++. .++...+.++...+. ..+.. .|-..-..-... ...+++..+++. .+..| ...+....
T Consensus 8 ~~y~~a~~a~~-~~~~~~~~~~~~~L~-dypL~----pYl~~~~l~~~~~~~~~~~i~~Fl~~---~p~~P~~~~lr~~~ 78 (450)
T d1qsaa1 8 SRYAQIKQAWD-NRQMDVVEQMMPGLK-DYPLY----PYLEYRQITDDLMNQPAVTVTNFVRA---NPTLPPARTLQSRF 78 (450)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHSGGGT-TSTTH----HHHHHHHHHHTGGGCCHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHhhhc-CCCCH----HHHHHHHHHhccccCCHHHHHHHHHH---CCCChhHHHHHHHH
Confidence 34555666555 567887777766653 22222 233332222222 234444444443 43433 33344455
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCC
Q 041936 117 IILYGQANMTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSD 196 (402)
Q Consensus 117 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 196 (402)
+..+.+.++++..+..+. ..+.+...-.....+....|+.++|...+..+-......| ..+..+...+.+.|.
T Consensus 79 l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p--~~c~~l~~~~~~~~~ 151 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP--NACDKLFSVWRASGK 151 (450)
T ss_dssp HHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC--THHHHHHHHHHHTTC
T ss_pred HHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHhcCC
Confidence 667788888877554442 2255666666778888899999999888877644322233 345666666655554
Q ss_pred hhH--HHHHHHHHHhCC-----------CCCCH-hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 041936 197 SSS--AYSILAEMDRKS-----------IKPNA-SSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLC 262 (402)
Q Consensus 197 ~~~--a~~~~~~~~~~g-----------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 262 (402)
+.. ..+-+..+...| ++++. ......+.... +...+... .... ..+......+..++.
T Consensus 152 lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~---~~~~--~~~~~~~~~~~~~l~ 223 (450)
T d1qsaa1 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTF---ARTT--GATDFTRQMAAVAFA 223 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHH---HHHS--CCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHH---HhcC--CCChhhhHHHHHHHH
Confidence 432 222333333332 11111 11111111111 11111111 1111 223333333333333
Q ss_pred c--cCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 041936 263 K--LRKCAEAKALLDEMLSKGMKPNSVTYSH----FIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGD 336 (402)
Q Consensus 263 ~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 336 (402)
+ ..+.+.+..++......... +...+.. +.......+..+.+..++......+. +.....-.+......++
T Consensus 224 rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~ 300 (450)
T d1qsaa1 224 SVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGD 300 (450)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTC
T ss_pred HHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCC
Confidence 3 35788888888887664322 2222222 22233345667888888877776543 44444445555667789
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 041936 337 YETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVKE 384 (402)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 384 (402)
+..+...+..|.... .....-.--+.+++...|+.+.|...|..+..
T Consensus 301 ~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 301 RRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 999999988775432 22334444567888999999999999999875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.12 E-value=3 Score=35.39 Aligned_cols=182 Identities=11% Similarity=-0.032 Sum_probs=109.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHH----HHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHH
Q 041936 195 SDSSSAYSILAEMDRKSIKPNASSFG----ALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEA 270 (402)
Q Consensus 195 ~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 270 (402)
.+.+.+..++........ .+..-.. .+.......+..+.+...+......+ .+.....-.+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 456677777776654421 1222222 22223344566677777776666554 3334444455556677888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------CCCCC----------HHh-----
Q 041936 271 KALLDEMLSKGMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS------------GLSPN----------SSV----- 323 (402)
Q Consensus 271 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------------~~~~~----------~~~----- 323 (402)
...+..|... ..-...-.-.+..++...|+.+.|...|...... |..++ ...
T Consensus 305 ~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 383 (450)
T d1qsaa1 305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP 383 (450)
T ss_dssp HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred HHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcCh
Confidence 8888877533 1123344456778888889999988888876532 11100 000
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 041936 324 YFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGASKVSEAKELIGLVK 383 (402)
Q Consensus 324 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 383 (402)
-..-+..+...|....|...+..+... .+......+.....+.|.++.|+.......
T Consensus 384 ~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 384 EMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 012245566778888888888877653 255566677777888888888887766553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.85 E-value=2.3 Score=28.60 Aligned_cols=65 Identities=12% Similarity=-0.139 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHhc---CCcchHHHHHHHhhcCCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHhHhC
Q 041936 74 DRLAFSIAINKLSEA---NYFNGISQYLEELKTRPDLQN-ERFHAHSIILYGQANMTEHAVRTFKEMDEH 139 (402)
Q Consensus 74 ~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 139 (402)
+..+-....-++++. .++++++.+++.+... .+.+ ...+-.+..+|.+.|++++|.+.++.+++.
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 334434444444443 3445666666666532 2222 233344555566677777777777766654
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.07 E-value=3 Score=29.05 Aligned_cols=144 Identities=13% Similarity=0.060 Sum_probs=97.5
Q ss_pred HhcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH
Q 041936 49 LKSESNPEKILEICRAAALTPESHLDRLAFSIAINKLSEANYFNGISQYLEELKTRPDLQNERFHAHSIILYGQANMTEH 128 (402)
Q Consensus 49 l~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 128 (402)
+...++++.|+.+-...... --...|..-++.+...|++++|..+--... ++...+..+.+.+-.+-...|+..-
T Consensus 9 ~~~l~n~~la~~lA~r~~Lp----GAd~l~~~~F~~lf~~g~y~eAA~~aA~sP-~giLRt~~Ti~rFk~~~~~pGq~sp 83 (157)
T d1bpoa1 9 TNVLQNPDLALRMAVRNNLA----GAEELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSP 83 (157)
T ss_dssp HHTTCCHHHHHHHHHHTTCS----SCHHHHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCH
T ss_pred HhccCCHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHhCC-cccccCHHHHHHHHcCCCCCCCCCH
Confidence 34557888887766555433 344568888899999999999998887765 5667777776665544455677778
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041936 129 AVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCESSDSSSAYSILAEM 207 (402)
Q Consensus 129 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 207 (402)
.+.+|..+.+.| +.+..---.+++.....|+.+-...++.+ ..+..+...-. ++. ..+..-|..+|.+.
T Consensus 84 LL~YF~~Ll~~~-~LN~~ESlEl~r~vL~q~r~~lve~Wl~e----~KL~~SEeLGD-lv~----~~d~~lAl~IY~ka 152 (157)
T d1bpoa1 84 LLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE----DKLECSEELGD-LVK----SVDPTLALSVYLRA 152 (157)
T ss_dssp HHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH----TCSCCCHHHHH-HHH----HHCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCchHHhHHHHHHHHhcCcHHHHHHHHHc----CCccCcHHHHH-HHH----HcCHHHHHHHHHHc
Confidence 888888888877 56666666677788888887777776543 34455544322 332 23556677776654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.11 E-value=2.8 Score=26.65 Aligned_cols=48 Identities=13% Similarity=0.044 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHhHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 041936 125 MTEHAVRTFKEMDEHKLRHSVGAFNALLLALTIAKDYKEVKRVFIEFP 172 (402)
Q Consensus 125 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 172 (402)
+.=++.+-++.+...++-|++....+.+.+|.+.+++..|+++|+.+.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555556666666666666666666666666666666666666653
|