Citrus Sinensis ID: 041942
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 498 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LXF2 | 548 | Pentatricopeptide repeat- | yes | no | 0.987 | 0.897 | 0.549 | 1e-170 | |
| Q9CA54 | 643 | Pentatricopeptide repeat- | no | no | 0.939 | 0.727 | 0.360 | 3e-91 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.943 | 0.634 | 0.334 | 2e-85 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.845 | 0.788 | 0.350 | 2e-83 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.889 | 0.685 | 0.368 | 6e-83 | |
| Q9FMA1 | 530 | Pentatricopeptide repeat- | no | no | 0.863 | 0.811 | 0.350 | 7e-83 | |
| O49399 | 545 | Pentatricopeptide repeat- | no | no | 0.893 | 0.816 | 0.343 | 1e-82 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.965 | 0.706 | 0.304 | 5e-82 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.879 | 0.706 | 0.345 | 6e-81 | |
| Q9LS72 | 600 | Pentatricopeptide repeat- | no | no | 0.959 | 0.796 | 0.317 | 7e-81 |
| >sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 598 bits (1542), Expect = e-170, Method: Compositional matrix adjust.
Identities = 295/537 (54%), Positives = 383/537 (71%), Gaps = 45/537 (8%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
+RT R +LW+ C N+RTLKQI A + +NG S+ S + ELIYS S+ +PGA+ YAHK
Sbjct: 8 DRTTNRRRPKLWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHK 67
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F +I +PD + N ++RGSAQS P V LYT+MEK + P+++TF+FVLKAC++L +
Sbjct: 68 LFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEW 127
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
R+ GF HGK+V++GF N +V+N+LI FHANCGDL AS LFD AK VAWSS+T+G
Sbjct: 128 RSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSG 187
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YA+RG++ A LFDEMP +D V+WNVMITG K EM+ A ELF+ ++DVV+WNAMI
Sbjct: 188 YAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMI 247
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
SGYV CG K+AL +F+EMR GE PD VT+LSLL+ACA LGDLE GK++H +L+ S
Sbjct: 248 SGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASV 307
Query: 301 VAKVLHG----NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+ + G NALIDMYAKCGSI+RAIEVF G++DRD+STW+TLI GLA H AE SI
Sbjct: 308 SSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIE 366
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
MF EMQRLKV P E+TF+GV++ACSH+G+V+EG+KYF LMRD YNIEPNI+HYG
Sbjct: 367 MFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDML 426
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
++G+VELG+ AN++LL+MRKDESGDYV
Sbjct: 427 GRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYV 486
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA-DDKAFLQYLFNLKPKPNS 493
LLSNIYAS G+W+ V+KVRK+ DD+ +KK G SLIE DDK ++YL + +P+ S
Sbjct: 487 LLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIEEDDDKLMMRYLLSSEPESRS 543
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (861), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 184/510 (36%), Positives = 279/510 (54%), Gaps = 42/510 (8%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H L C NLR L QI L G ++DS +LI ++ I A+ YA ++ +
Sbjct: 6 HHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCF 65
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMG 124
EPD FM+NT++RG ++S P ++V ++ +M K + P+ F+F+FV+KA G
Sbjct: 66 PEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTG 125
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
F +H + +K+G E + FV +LI + CG + A +FD + ++VAW+++ R
Sbjct: 126 FQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRG 185
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
+++ AR +FD+M VR+ SWNVM+ GY K GE+E A +F+E+P RD VSW+ MI G
Sbjct: 186 NDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIA 245
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
G ++ F E++ G P++V++ +L+AC+ G E GK +H ++ V
Sbjct: 246 HNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILH-GFVEKAGYSWIV 304
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
NALIDMY++CG++ A VF GM++ R + +W+++I GLA HG EE++ +F EM
Sbjct: 305 SVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTA 364
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------------ 411
V P I+F+ +L ACSHAG +EEG+ YF M+ Y+IEP I HYG
Sbjct: 365 YGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQ 424
Query: 412 ---------------------------HGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
HG++EL +RL + + SGD VLLSN YA
Sbjct: 425 KAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYA 484
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIE 474
+ G+W V +RK M IKK SL+E
Sbjct: 485 TAGKWKDVASIRKSMIVQRIKKTTAWSLVE 514
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 316 bits (810), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 195/583 (33%), Positives = 287/583 (49%), Gaps = 113/583 (19%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPG--AINYAHKMFV 63
H S L C L++L+ I A + G ++ + AL +LI ++ P + YA +F
Sbjct: 34 HPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLI-EFCILSPHFEGLPYAISVFK 92
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
I EP+ ++NT+ RG A S +P+ A+ LY M + PN +TF FVLK+C +
Sbjct: 93 TIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKE 152
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFH-------------------------------AN 152
G +HG ++K G + + +V SLI + A+
Sbjct: 153 GQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYAS 212
Query: 153 CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLF----------DEMPVRDL 202
G + A LFD DVV+W+++ +GYA G A LF DE + +
Sbjct: 213 RGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTV 272
Query: 203 VS----------------W-------------NVMITGYAKQGEMEKANELFNEVPKRDV 233
VS W N +I Y+K GE+E A LF +P +DV
Sbjct: 273 VSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDV 332
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293
+SWN +I GY + K+AL +F+EM GE P+DVTMLS+L ACA LG +++G+ +H
Sbjct: 333 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY 392
Query: 294 LLDMTSGVAKVLH-GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAE 352
+ GV +LIDMYAKCG IE A +VF + + +S+W+ +I G A HG A+
Sbjct: 393 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRAD 452
Query: 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-- 410
S +F M+++ ++P +ITFVG+L ACSH+G ++ G+ F+ M +Y + P + HYG
Sbjct: 453 ASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCM 512
Query: 411 -------------------------------------VHGDVELGRLANKRLLNMRKDES 433
+HG+VELG + L+ + +
Sbjct: 513 IDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENP 572
Query: 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEAD 476
G YVLLSNIYAS G WN V K R L++D +KK PGCS IE D
Sbjct: 573 GSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (793), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/497 (35%), Positives = 275/497 (55%), Gaps = 76/497 (15%)
Query: 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81
K+I A + I+G + S + +++ + ++YA ++F +++ P+ F+YN+IIR
Sbjct: 27 KKINASIIIHGLSQSSFMVTKMVDFCDKI--EDMDYATRLFNQVSNPNVFLYNSIIRAYT 84
Query: 82 QSQNPLDAVFLYTQMEKCSIK-PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR 140
+ D + +Y Q+ + S + P++FTF F+ K+C L +G VHG + K+G F+
Sbjct: 85 HNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHV 144
Query: 141 FVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200
N+LI D+ Y + +L A +FDEM R
Sbjct: 145 VTENALI-------DM------------------------YMKFDDLVDAHKVFDEMYER 173
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D++SWN +++GYA+ G+M+KA LF+ + + +VSW AMISGY G +A++ F EM+
Sbjct: 174 DVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQ 233
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-GNALIDMYAKCGS 319
G PD+++++S+L +CA LG LE+GK +H L G K NALI+MY+KCG
Sbjct: 234 LAGIEPDEISLISVLPSCAQLGSLELGKWIH--LYAERRGFLKQTGVCNALIEMYSKCGV 291
Query: 320 IERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379
I +AI++F M +DV +WST+I G A+HG A +I F EMQR KV+P ITF+G+L A
Sbjct: 292 ISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSA 351
Query: 380 CSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------------------------- 410
CSH G +EG +YF +MR +Y IEP I HYG
Sbjct: 352 CSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSK 411
Query: 411 ----------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460
G++++ +A L+ + ++ G+YVLL+NIYA G+W V ++RK++
Sbjct: 412 IWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIR 471
Query: 461 DSDIKKQPGCSLIEADD 477
+ ++KK PG SLIE ++
Sbjct: 472 NENMKKTPGGSLIEVNN 488
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (789), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 187/507 (36%), Positives = 277/507 (54%), Gaps = 64/507 (12%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIY--SGSVVIPGAINYAHKMFVKITEPDTFM 72
C +R L QI A+ +G D+ A E++ + S + ++YAHK+F ++ + + F
Sbjct: 33 CRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFS 92
Query: 73 YNTIIRGSAQSQNP---LDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129
+NTIIRG ++S + Y M ++PN+FTF VLKAC + G +HG
Sbjct: 93 WNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHG 152
Query: 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA-KMDVVAWSSLTAGYARRGELS 188
+KYGF + FV ++L+ + CG + A VLF + + D+V +T R GE+
Sbjct: 153 LALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVV---MTDRRKRDGEI- 208
Query: 189 MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248
V WNVMI GY + G+ + A LF+++ +R VVSWN MISGY L G
Sbjct: 209 --------------VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254
Query: 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308
K A+E+F EM+ RP+ VT++S+L A + LG LE+G+ +H D + VL G+
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVL-GS 313
Query: 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368
ALIDMY+KCG IE+AI VF + +V TWS +I G A HG A ++I F +M++ VRP
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRP 373
Query: 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------------ 410
+++ ++ +L ACSH G VEEG++YF M +EP I HYG
Sbjct: 374 SDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEF 433
Query: 411 ---------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449
+ G+VE+G+ L++M +SG YV LSN+YAS+G W
Sbjct: 434 ILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNW 493
Query: 450 NRVEKVRKLMDDSDIKKQPGCSLIEAD 476
+ V ++R M + DI+K PGCSLI+ D
Sbjct: 494 SEVSEMRLRMKEKDIRKDPGCSLIDID 520
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (789), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 178/508 (35%), Positives = 270/508 (53%), Gaps = 78/508 (15%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
NL+TLKQ + I G N D+ + + I + S G + YA+ +F P+T+++NT+
Sbjct: 27 NLKTLKQSHCYMIITGLNRDNLNVAKFIEACSN--AGHLRYAYSVFTHQPCPNTYLHNTM 84
Query: 77 IRGSAQSQNPLD---AVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
IR + P A+ +Y ++ KP+ FTF FVLK R+ G +HG++V
Sbjct: 85 IRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVV 144
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
+GF+ + V LI + +CG L GDA R +
Sbjct: 145 FGFDSSVHVVTGLIQMYFSCGGL--------GDA-----------------------RKM 173
Query: 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP--KRDVVSWNAMISGYVLCGMNKQ 251
FDEM V+D+ WN ++ GY K GEM++A L +P R+ VSW +ISGY G +
Sbjct: 174 FDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASE 233
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311
A+E+F+ M PD+VT+L++L+ACADLG LE+G+++ C+ +D V NA+I
Sbjct: 234 AIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERI-CSYVDHRGMNRAVSLNNAVI 292
Query: 312 DMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371
DMYAK G+I +A++VF + +R+V TW+T+I GLA HG E++AMF M + VRP ++
Sbjct: 293 DMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDV 352
Query: 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------- 410
TF+ +L ACSH G V+ GK+ F MR +Y I PNI HYG
Sbjct: 353 TFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKS 412
Query: 411 ------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV 452
VH D+ELG A L+ + + SG+Y+LL+N+Y++ G W+
Sbjct: 413 MPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDES 472
Query: 453 EKVRKLMDDSDIKKQPGCSLIEADDKAF 480
+R +M +KK G S IE +++ +
Sbjct: 473 RMMRNMMKGIGVKKMAGESSIEVENRVY 500
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 307 bits (787), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 168/489 (34%), Positives = 264/489 (53%), Gaps = 44/489 (8%)
Query: 13 KKCTNLRTLKQIQALVTINGFNSDS-SALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
++ +L ++Q A + G D+ SA + + ++ + P ++YAH + +I P+ F
Sbjct: 47 ERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGF 106
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
+N++IR A S P A+ ++ +M + P+K++F+FVLKAC G +HG
Sbjct: 107 THNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLF 166
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
+K G + FV N+L+ + G A + D D V+W+SL + Y +G + AR
Sbjct: 167 IKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEAR 226
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+LFDEM R++ SWN MI+GYA G +++A E+F+ +P RDVVSWNAM++ Y G +
Sbjct: 227 ALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNE 286
Query: 252 ALEMFEEM-RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
LE+F +M E+PD T++S+L+ACA LG L G+ VH +D + AL
Sbjct: 287 VLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVH-VYIDKHGIEIEGFLATAL 345
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+DMY+KCG I++A+EVF RDVSTW+++I L+ HG ++++ +F EM +P
Sbjct: 346 VDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNG 405
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLAN-------- 422
ITF+GVL AC+H G +++ +K F++M Y +EP I HYG D+ LGR+
Sbjct: 406 ITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDL-LGRMGKIEEAEELV 464
Query: 423 --------------------------------KRLLNMRKDESGDYVLLSNIYASRGEWN 450
RLL + +S Y +SN+YAS G W
Sbjct: 465 NEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWE 524
Query: 451 RVEKVRKLM 459
+V R+ M
Sbjct: 525 KVIDGRRNM 533
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (781), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 181/595 (30%), Positives = 289/595 (48%), Gaps = 114/595 (19%)
Query: 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDT 70
L +KC L LKQIQA + ING D A LI ++ ++Y+ K+ I P+
Sbjct: 59 LLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNI 118
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEK---CSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
F +N IRG ++S+NP ++ LY QM + C +P+ FT+ + K C L ++G +
Sbjct: 119 FSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMI 178
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
G ++K E V N+ I+ A+CGD+ A +FD D+V+W+ L GY + GE
Sbjct: 179 LGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEA 238
Query: 188 SMARSLF----------DEMPVRDLVS-----------------------------WNVM 208
A ++ D++ + LVS N +
Sbjct: 239 EKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNAL 298
Query: 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM-------------------- 248
+ ++K G++ +A +F+ + KR +VSW MISGY CG+
Sbjct: 299 MDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWN 358
Query: 249 -----------NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
+ AL +F+EM++ +PD++TM+ L+AC+ LG L+VG +H ++
Sbjct: 359 AMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIH-RYIEK 417
Query: 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAM 357
S V G +L+DMYAKCG+I A+ VF G++ R+ T++ +IGGLA HG A +I+
Sbjct: 418 YSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISY 477
Query: 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV------ 411
F EM + P EITF+G+L AC H G ++ G+ YF M+ +N+ P ++HY +
Sbjct: 478 FNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLG 537
Query: 412 ---------------------------------HGDVELGRLANKRLLNMRKDESGDYVL 438
HG+VELG A K+LL + +SG YVL
Sbjct: 538 RAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVL 597
Query: 439 LSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
L +Y W ++ R++M++ ++K PGCS IE + +++ K +P S
Sbjct: 598 LDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNG-IVCEFIVRDKSRPES 651
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (772), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 176/510 (34%), Positives = 257/510 (50%), Gaps = 72/510 (14%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELI-YSGSVVIPGAINYAHKMF 62
N + + ++C+ LKQI A + G DS A+ + + + S + YA +F
Sbjct: 13 NLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVF 72
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
PDTF++N +IRG + S P ++ LY +M S N +TF +LKAC+ L
Sbjct: 73 DGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFE 132
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
+H +I K G+E DV A +SL YA
Sbjct: 133 ETTQIHAQITKLGYE-------------------------------NDVYAVNSLINSYA 161
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
G +A LFD +P D VSWN +I GY K G+M+ A LF ++ +++ +SW MISG
Sbjct: 162 VTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISG 221
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
YV MNK+AL++F EM++ PD+V++ + L+ACA LG LE GK +H L +
Sbjct: 222 YVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMD 281
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
VL G LIDMYAKCG +E A+EVF ++ + V W+ LI G A+HG E+I+ F EMQ
Sbjct: 282 SVL-GCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQ 340
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------ 410
++ ++P ITF VL ACS+ G VEEGK F M +YN++P I HYG
Sbjct: 341 KMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLL 400
Query: 411 ---------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443
+H ++ELG + L+ + G YV +NI+
Sbjct: 401 DEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIH 460
Query: 444 ASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473
A +W++ + R+LM + + K PGCS I
Sbjct: 461 AMDKKWDKAAETRRLMKEQGVAKVPGCSTI 490
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (772), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 177/558 (31%), Positives = 289/558 (51%), Gaps = 80/558 (14%)
Query: 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMY 73
KC NL +KQ+ A + + D +LI + S+ N A ++F ++ EP+ +
Sbjct: 28 KCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLC--RQTNLAVRVFNQVQEPNVHLC 85
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
N++IR AQ+ P A F++++M++ + + FT+ F+LKAC+ + + +H I K
Sbjct: 86 NSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEK 145
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNT--ASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
G + +V N+LI ++ CG L A LF+ ++ D V+W+S+ G + GEL AR
Sbjct: 146 LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDAR 205
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAM------------ 239
LFDEMP RDL+SWN M+ GYA+ EM KA ELF ++P+R+ VSW+ M
Sbjct: 206 RLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEM 265
Query: 240 ---------------------ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278
I+GY G+ K+A + ++M + G + D ++S+L AC
Sbjct: 266 ARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAAC 325
Query: 279 ADLGDLEVGKKVHCTLLDMTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
+ G L +G ++H L G A VL NAL+DMYAKCG++++A +VF + +D+ +
Sbjct: 326 TESGLLSLGMRIHSILKRSNLGSNAYVL--NALLDMYAKCGNLKKAFDVFNDIPKKDLVS 383
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+T++ GL HG +E+I +F M+R +RP ++TF+ VL +C+HAG ++EG YF M
Sbjct: 384 WNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSME 443
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
Y++ P + HYG +H +V++
Sbjct: 444 KVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIA 503
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+ L+ + + G+Y LLSNIYA+ +W V +R M ++K G S +E +D
Sbjct: 504 KEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDG 563
Query: 479 AFLQYLFNLKPKPNSGNL 496
+F+ K P S +
Sbjct: 564 IHEFTVFD-KSHPKSDQI 580
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 498 | ||||||
| 225452869 | 550 | PREDICTED: pentatricopeptide repeat-cont | 0.983 | 0.890 | 0.655 | 0.0 | |
| 296082942 | 526 | unnamed protein product [Vitis vinifera] | 0.945 | 0.895 | 0.657 | 0.0 | |
| 224141419 | 546 | predicted protein [Populus trichocarpa] | 0.985 | 0.899 | 0.627 | 0.0 | |
| 449447637 | 542 | PREDICTED: pentatricopeptide repeat-cont | 0.981 | 0.902 | 0.606 | 0.0 | |
| 42567862 | 548 | pentatricopeptide repeat-containing prot | 0.987 | 0.897 | 0.549 | 1e-168 | |
| 297811669 | 548 | pentatricopeptide repeat-containing prot | 0.987 | 0.897 | 0.547 | 1e-168 | |
| 255584793 | 480 | pentatricopeptide repeat-containing prot | 0.895 | 0.929 | 0.632 | 1e-168 | |
| 357501951 | 519 | Pentatricopeptide repeat-containing prot | 0.921 | 0.884 | 0.563 | 1e-164 | |
| 356567054 | 518 | PREDICTED: pentatricopeptide repeat-cont | 0.941 | 0.905 | 0.549 | 1e-160 | |
| 7671499 | 514 | putative protein [Arabidopsis thaliana] | 0.933 | 0.904 | 0.550 | 1e-159 |
| >gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15300-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/529 (65%), Positives = 418/529 (79%), Gaps = 39/529 (7%)
Query: 4 NRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFV 63
+R + S+LW+ CT + TLKQI A + + GFNS++SALRELIY+ S+ I G + YAH++F
Sbjct: 12 SRQQRSQLWRSCTTIGTLKQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFP 71
Query: 64 KITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123
ITEPDTFM+NT+IRGSAQS +PL+A+ LY+QME ++P+KFTF FVLKACTRL + M
Sbjct: 72 HITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKM 131
Query: 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR 183
GF VHG++ + GFE N FVRN+LIYFHANCGDL A LFDG AK DVVAWS+LTAGYAR
Sbjct: 132 GFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYAR 191
Query: 184 RGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGY 243
RGEL +AR LFDEMPV+DLVSWNVMITGYAK+GEME A +LF+EVPKRDVV+WNAMI+GY
Sbjct: 192 RGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGY 251
Query: 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303
VLCG N+QALEMFEEMRSVGE PD+VTMLSLL+AC DLGDL+ G+++HC + +M
Sbjct: 252 VLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLS 311
Query: 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363
VL GNALIDMYAKCGSI RA+EVF GMR++DVSTW++++GGLAFHG AE+SI +F EM++
Sbjct: 312 VLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRK 371
Query: 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------------- 410
LK+RP EITFVGVLVACSHAG+VEEG++YF LMRDEYNIEPNIRHYG
Sbjct: 372 LKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLN 431
Query: 411 --------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444
+HG+VELGR AN +LL MR DESGDYVLLSNIYA
Sbjct: 432 EAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYA 491
Query: 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
SRGEW+ VEKVRKLMDDS ++K+ GCSLIE D+KA + +LF+ KPK NS
Sbjct: 492 SRGEWDGVEKVRKLMDDSGVRKEAGCSLIEGDNKALMHFLFDSKPKLNS 540
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/511 (65%), Positives = 402/511 (78%), Gaps = 40/511 (7%)
Query: 28 VTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPL 87
+ + GFNS++SALRELIY+ S+ I G + YAH++F ITEPDTFM+NT+IRGSAQS +PL
Sbjct: 1 MIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPL 60
Query: 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147
+A+ LY+QME ++P+KFTF FVLKACTRL + MGF VHG++ + GFE N FVRN+LI
Sbjct: 61 NAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLI 120
Query: 148 YFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNV 207
YFHANCGDL A LFDG AK DVVAWS+LTAGYARRGEL +AR LFDEMPV+DLVSWNV
Sbjct: 121 YFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNV 180
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
MITGYAK+GEME A +LF+EVPKRDVV+WNAMI+GYVLCG N+QALEMFEEMRSVGE PD
Sbjct: 181 MITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPD 240
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
+VTMLSLL+AC DLGDL+ G+++HC + +M VL GNALIDMYAKCGSI RA+EVF
Sbjct: 241 EVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVF 300
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
GMR++DVSTW++++GGLAFHG AE+SI +F EM++LK+RP EITFVGVLVACSHAG+VE
Sbjct: 301 QGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVE 360
Query: 388 EGKKYFKLMRDEYNIEPNIRHYG------------------------------------- 410
EG++YF LMRDEYNIEPNIRHYG
Sbjct: 361 EGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGA 420
Query: 411 --VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
+HG+VELGR AN +LL MR DESGDYVLLSNIYASRGEW+ VEKVRKLMDDS ++K+
Sbjct: 421 CRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEA 480
Query: 469 GCSLIEADDKAFLQYLFNLKPKPN-SGNLDT 498
GCSLIE D+KA + +LF+ KP GN DT
Sbjct: 481 GCSLIEGDNKALMHFLFDSKPNLFIEGNDDT 511
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa] gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/531 (62%), Positives = 411/531 (77%), Gaps = 40/531 (7%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF 62
TNR + S LWK C NL LKQI A + I GFNS+ +ALRELI++G++ I GAINYAH++F
Sbjct: 11 TNRKQPSSLWKNCNNLLALKQIHATLIIKGFNSNRAALRELIFAGAMTISGAINYAHQVF 70
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
+ITEPD FM+NT++RGS+QS+NP V LYTQME +KP+KFTFSF+LK CTRL +R
Sbjct: 71 AQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRK 130
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
GFCVHGK++KYGFE N FVRN+LIYFH+NCGDL A +F + VV+WS+LTAGYA
Sbjct: 131 TGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYA 190
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
RRGEL +AR +FDEMPV+DLVSWNVMITGY K GEME A LF+E P++DVV+WN MI+G
Sbjct: 191 RRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAG 250
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
YVL G +QALEMFEEMR+VGE PD+VTMLSLL+ACADLGDL+VG+K+HC++ +MT G
Sbjct: 251 YVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDL 310
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
VL GNAL+DMYAKCGSIE A++VF MR++DV+TW+++IGGLAFHG AEESI +F EMQ
Sbjct: 311 SVLLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQ 370
Query: 363 RLK-VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----------- 410
LK ++P EITFVGV+VACSHAG VEEG++YFKLMR+ Y+IEPN+ H+G
Sbjct: 371 ALKNIKPNEITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGL 430
Query: 411 ----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442
VHG+VELGRLAN+RLL +R+DESGDYVLLSNI
Sbjct: 431 LSEAFELIAKMEIEPNAIIWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLLSNI 490
Query: 443 YASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPKPNS 493
YAS GEW+ E+VRKLMDD ++K+ G SLIEADD+A +Q+LF+ KPK NS
Sbjct: 491 YASAGEWDGAEEVRKLMDDGGVRKEAGRSLIEADDRAVMQFLFDPKPKLNS 541
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15300-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/528 (60%), Positives = 402/528 (76%), Gaps = 39/528 (7%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
N NR + S LW+KCTN R+LKQ+ A + +NG NS +S LRELI+ ++V+ G ++YAH+
Sbjct: 9 NSFNRFQQSSLWQKCTNFRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQ 68
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F +I++PD FM+NT+IRGSAQ+ P AV LYTQME ++P+KFTFSFVLKACT+L +
Sbjct: 69 LFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSW 128
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
+GF +HGK++K GF+ N FVRN+LIYFHANCGDL TA LFD AK +VV WS+LTAG
Sbjct: 129 VKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAG 188
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YARRG+L +AR LFDEMP++DLVSWNVMIT YAK GEMEKA +LF+EVPK+DVV+WNAMI
Sbjct: 189 YARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMI 248
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
+GYVL +NK+ALEMF+ MR +G+RPDDVTMLS+L+A ADLGDLE+GKK+H ++ DM G
Sbjct: 249 AGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCG 308
Query: 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360
VL NALIDMYAKCGSI A+EVF GMR +D S+W+++IGGLA HG AEESI +F+E
Sbjct: 309 DLSVLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQE 368
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410
M RLK++P EITFV VLVACSHAGKV EG+ YF LM++ + IEPNI+HYG
Sbjct: 369 MLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAG 428
Query: 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
VHGDVELGR AN++LL MRKDESGDYVLLSN
Sbjct: 429 LLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRKDESGDYVLLSN 488
Query: 442 IYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKP 489
IYAS+GEW+ V+KVRKLMDD +KK+ G SLI++D+ + +LF+ KP
Sbjct: 489 IYASQGEWDGVQKVRKLMDDGGVKKKVGHSLIDSDNSFLMHFLFDSKP 536
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300 gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 295/537 (54%), Positives = 383/537 (71%), Gaps = 45/537 (8%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
+RT R +LW+ C N+RTLKQI A + +NG S+ S + ELIYS S+ +PGA+ YAHK
Sbjct: 8 DRTTNRRRPKLWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHK 67
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F +I +PD + N ++RGSAQS P V LYT+MEK + P+++TF+FVLKAC++L +
Sbjct: 68 LFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEW 127
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
R+ GF HGK+V++GF N +V+N+LI FHANCGDL AS LFD AK VAWSS+T+G
Sbjct: 128 RSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSG 187
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YA+RG++ A LFDEMP +D V+WNVMITG K EM+ A ELF+ ++DVV+WNAMI
Sbjct: 188 YAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMI 247
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
SGYV CG K+AL +F+EMR GE PD VT+LSLL+ACA LGDLE GK++H +L+ S
Sbjct: 248 SGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASV 307
Query: 301 VAKVLHG----NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+ + G NALIDMYAKCGSI+RAIEVF G++DRD+STW+TLI GLA H AE SI
Sbjct: 308 SSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIE 366
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
MF EMQRLKV P E+TF+GV++ACSH+G+V+EG+KYF LMRD YNIEPNI+HYG
Sbjct: 367 MFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDML 426
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
++G+VELG+ AN++LL+MRKDESGDYV
Sbjct: 427 GRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYV 486
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA-DDKAFLQYLFNLKPKPNS 493
LLSNIYAS G+W+ V+KVRK+ DD+ +KK G SLIE DDK ++YL + +P+ S
Sbjct: 487 LLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIEEDDDKLMMRYLLSSEPESRS 543
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 294/537 (54%), Positives = 382/537 (71%), Gaps = 45/537 (8%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
+RT R S+LW+ C N RTL QI A + +NG S+ S + ELIYS S+ +PGA+ YAHK
Sbjct: 8 DRTTNRRRSKLWQNCKNFRTLMQIHAFMVVNGLMSNLSVVGELIYSASLSVPGALKYAHK 67
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F +I +PD + N ++RGSAQS P V LYT+MEK + P+++TF+FVLKAC++L +
Sbjct: 68 LFEEIPKPDVSICNHVLRGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEW 127
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
R+ GF +HGK+V++GF N +V+N+LI FHANCGDL AS LFD AK VAWSS+T+G
Sbjct: 128 RSNGFAIHGKVVRHGFLLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSG 187
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YA+RG++ A LFDEMP +D V+WNVMITG K EM+ A ELF+ ++DVV+WNAMI
Sbjct: 188 YAKRGKIDEAMRLFDEMPDKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMI 247
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
SGYV CG K+AL +F+EMR GE PD VT+LSLL+ACA LGDLE GK++H +L+ S
Sbjct: 248 SGYVNCGYPKEALSIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASV 307
Query: 301 VAKVLHG----NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+ + G NALIDMYAKCGSI+RAIEVF GM+DRD+STW+TLI GLA H AE S+
Sbjct: 308 SSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALH-HAEGSVE 366
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
MF EMQRLKV P E+TF+GV++ACSH+G+V+EG+KYF LMRD YNIEPNI+HYG
Sbjct: 367 MFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDML 426
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
++G+VELG+ AN++LL+MRKDESGDYV
Sbjct: 427 GRAGLLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYV 486
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA-DDKAFLQYLFNLKPKPNS 493
LLSNIYAS G+W+ V+KVRK+ DD+ +KK G SLIE DDK ++YL + + + S
Sbjct: 487 LLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGISLIEEDDDKLMMRYLLSSEAESKS 543
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255584793|ref|XP_002533114.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527077|gb|EEF29259.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 288/455 (63%), Positives = 355/455 (78%), Gaps = 9/455 (1%)
Query: 3 TNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMF 62
T R + S LW+ CTNLR+LKQI A + I GFNS S ALRELI++ ++VIPG I+YAH++F
Sbjct: 11 TKRQQPSSLWQNCTNLRSLKQIHASLIIKGFNSSSYALRELIFASAIVIPGTIDYAHQLF 70
Query: 63 VKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN 122
++ EPD FM+NT++RGS+QS +P+ AV LYTQME C IKP+KFTFSF+LKACTRL +RN
Sbjct: 71 DQVAEPDIFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSFLLKACTRLEWRN 130
Query: 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA 182
MGFC+HGK +K+GF+ N FVRN+L+Y+HA CGDL A +FD AK DVVAWS+LTAGYA
Sbjct: 131 MGFCIHGKALKHGFQENTFVRNTLVYYHAKCGDLGIAREMFDDSAKRDVVAWSALTAGYA 190
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISG 242
RRGEL MAR LFDEMPV+DLV+WNV+IT Y K+GEM A +LFNEVP+RDVV+WNAMI+G
Sbjct: 191 RRGELCMARRLFDEMPVKDLVAWNVIITAYVKRGEMACARKLFNEVPRRDVVTWNAMIAG 250
Query: 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302
+V CG N+QALEMFEEM SVGE+PD+VTMLSLL+AC DLGDLEVGKKVH ++L+M+ G
Sbjct: 251 FVHCGENEQALEMFEEMISVGEQPDEVTMLSLLSACTDLGDLEVGKKVHSSILEMSLGDL 310
Query: 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
VL GNAL MYAKCGSIERA+EVF GMR++DV+TW+++I GLA HG AEESI +FREMQ
Sbjct: 311 SVLLGNALTYMYAKCGSIERALEVFRGMREKDVTTWNSVIVGLALHGHAEESIHLFREMQ 370
Query: 363 RL-KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLA 421
RL ++P EITFVGVLVACSHAGKVEEG++YF LM + Y + +R H L L
Sbjct: 371 RLNNIKPNEITFVGVLVACSHAGKVEEGQRYFDLMTNLYILAGFLRIENSHHSGCLEPLN 430
Query: 422 NKRLLNMRKDESGDY--------VLLSNIYASRGE 448
R+L D S + +LLS Y G+
Sbjct: 431 FARVLIRLMDLSASFKNLVIHMGILLSVTYLVLGK 465
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 284/504 (56%), Positives = 360/504 (71%), Gaps = 45/504 (8%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYS------GSVVIPGAINYAHKMFVKITEPDT 70
NL+TLKQI AL+ INGFN++ + L +L+ + G P NYAH++F +I +PDT
Sbjct: 14 NLKTLKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPDT 73
Query: 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGK 130
FMYN +IRGS+QS NPL A+ LYT+M + +K + +TF FVLKACTRL + N G VHG
Sbjct: 74 FMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVHGM 133
Query: 131 IVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190
+++ GF N VRN+L+ FHA CGDLN A+ LFD K DVVAWSSL AGYARRG+L +A
Sbjct: 134 VLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVA 193
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
R LF+EMP RDLVSWNVMITGY KQGEME A LF+E P +DVVSWNAMI+GYV+CG++K
Sbjct: 194 RKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSK 253
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
QALE+F EM G PD+VT+LSLL+ACADLGDLE GKKVH +++++ G L GNAL
Sbjct: 254 QALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNAL 313
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
IDMYAKCG+I+ +++VF + D+DV +W+++I G+A HG +ES+++F+ MQR K+ P E
Sbjct: 314 IDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNE 373
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------------- 410
ITFVGVLVACSHAG+++EG KYF LM EY IEPNIRH G
Sbjct: 374 ITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFID 433
Query: 411 -------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451
VHGDVEL ++AN++L +MRKD SGDYVL+SN+YASRGEW+
Sbjct: 434 SMKIEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLYASRGEWDG 493
Query: 452 VEKVRKLMDDSDIKKQPGCSLIEA 475
EKVRKLMDDS + K G S +EA
Sbjct: 494 AEKVRKLMDDSGVTKIRGSSFVEA 517
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15300-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 285/519 (54%), Positives = 363/519 (69%), Gaps = 50/519 (9%)
Query: 2 RTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSG--SVVIPGA----I 55
R R RS+ TN+ TLKQI AL+ +NG S+ LR+L+ + S+V P A I
Sbjct: 3 RKRRGRST-----ITNVGTLKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVI 57
Query: 56 NYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
YA +MF +I +PDTFM+NT IRGS+QS +P+ AV LY QM++ S+KP+ FTF FVLKAC
Sbjct: 58 RYALQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKAC 117
Query: 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWS 175
T+L + N G VHG++++ GF N VRN+L+ FHA CGDL A+ +FD K DVVAWS
Sbjct: 118 TKLFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWS 177
Query: 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS 235
+L AGYA+RG+LS+AR LFDEMP RDLVSWNVMIT Y K GEME A LF+E P +D+VS
Sbjct: 178 ALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVS 237
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
WNA+I GYVL +N++ALE+F+EM VGE PD+VTMLSLL+ACADLGDLE G+KVH ++
Sbjct: 238 WNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKII 297
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
+M G L GNAL+DMYAKCG+I +A+ VF +RD+DV +W+++I GLAFHG AEES+
Sbjct: 298 EMNKGKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESL 357
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----- 410
+FREM+ KV P E+TFVGVL ACSHAG V+EG +YF LM+++Y IEP IRH G
Sbjct: 358 GLFREMKMTKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDM 417
Query: 411 ----------------------------------VHGDVELGRLANKRLLNMRKDESGDY 436
VHGDVEL + AN++LL MR D+SGDY
Sbjct: 418 LGRAGLLKEAFNFIASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGDY 477
Query: 437 VLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475
VLLSN+YAS+GEW+ E VRKLMDD+ + K G S +EA
Sbjct: 478 VLLSNVYASQGEWDGAENVRKLMDDNGVTKNRGSSFVEA 516
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust.
Identities = 281/510 (55%), Positives = 365/510 (71%), Gaps = 45/510 (8%)
Query: 28 VTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPL 87
+ +NG S+ S + ELIYS S+ +PGA+ YAHK+F +I +PD + N ++RGSAQS P
Sbjct: 1 MVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPE 60
Query: 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147
V LYT+MEK + P+++TF+FVLKAC++L +R+ GF HGK+V++GF N +V+N+LI
Sbjct: 61 KTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALI 120
Query: 148 YFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNV 207
FHANCGDL AS LFD AK VAWSS+T+GYA+RG++ A LFDEMP +D V+WNV
Sbjct: 121 LFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNV 180
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
MITG K EM+ A ELF+ ++DVV+WNAMISGYV CG K+AL +F+EMR GE PD
Sbjct: 181 MITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPD 240
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG----NALIDMYAKCGSIERA 323
VT+LSLL+ACA LGDLE GK++H +L+ S + + G NALIDMYAKCGSI+RA
Sbjct: 241 VVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRA 300
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
IEVF G++DRD+STW+TLI GLA H AE SI MF EMQRLKV P E+TF+GV++ACSH+
Sbjct: 301 IEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHS 359
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG--------------------------------- 410
G+V+EG+KYF LMRD YNIEPNI+HYG
Sbjct: 360 GRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRT 419
Query: 411 ------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464
++G+VELG+ AN++LL+MRKDESGDYVLLSNIYAS G+W+ V+KVRK+ DD+ +
Sbjct: 420 LLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRV 479
Query: 465 KKQPGCSLIEA-DDKAFLQYLFNLKPKPNS 493
KK G SLIE DDK ++YL + +P+ S
Sbjct: 480 KKPTGVSLIEEDDDKLMMRYLLSSEPESRS 509
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 498 | ||||||
| TAIR|locus:2150996 | 548 | AT5G15300 "AT5G15300" [Arabido | 0.837 | 0.760 | 0.588 | 4.8e-133 | |
| TAIR|locus:2019160 | 643 | AT1G74630 [Arabidopsis thalian | 0.825 | 0.639 | 0.381 | 1.3e-75 | |
| TAIR|locus:2117084 | 545 | AT4G18840 "AT4G18840" [Arabido | 0.887 | 0.811 | 0.353 | 1.7e-75 | |
| TAIR|locus:2010652 | 665 | AT1G04840 "AT1G04840" [Arabido | 0.943 | 0.706 | 0.312 | 1.9e-60 | |
| TAIR|locus:2181201 | 691 | AT5G27110 [Arabidopsis thalian | 0.475 | 0.342 | 0.369 | 9.2e-58 | |
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.644 | 0.601 | 0.392 | 3.6e-57 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.598 | 0.480 | 0.413 | 1.6e-56 | |
| TAIR|locus:2161018 | 530 | AT5G56310 "AT5G56310" [Arabido | 0.600 | 0.564 | 0.407 | 3.3e-56 | |
| TAIR|locus:2010012 | 474 | AT1G13410 "AT1G13410" [Arabido | 0.622 | 0.654 | 0.393 | 8.6e-56 | |
| TAIR|locus:2094812 | 600 | AT3G29230 "AT3G29230" [Arabido | 0.791 | 0.656 | 0.315 | 7.8e-55 |
| TAIR|locus:2150996 AT5G15300 "AT5G15300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1304 (464.1 bits), Expect = 4.8e-133, P = 4.8e-133
Identities = 249/423 (58%), Positives = 320/423 (75%)
Query: 1 NRTNRHRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHK 60
+RT R +LW+ C N+RTLKQI A + +NG S+ S + ELIYS S+ +PGA+ YAHK
Sbjct: 8 DRTTNRRRPKLWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHK 67
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120
+F +I +PD + N ++RGSAQS P V LYT+MEK + P+++TF+FVLKAC++L +
Sbjct: 68 LFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEW 127
Query: 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAG 180
R+ GF HGK+V++GF N +V+N+LI FHANCGDL AS LFD AK VAWSS+T+G
Sbjct: 128 RSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSG 187
Query: 181 YARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240
YA+RG++ A LFDEMP +D V+WNVMITG K EM+ A ELF+ ++DVV+WNAMI
Sbjct: 188 YAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMI 247
Query: 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG 300
SGYV CG K+AL +F+EMR GE PD VT+LSLL+ACA LGDLE GK++H +L+ S
Sbjct: 248 SGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASV 307
Query: 301 VAKVLHG----NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+ + G NALIDMYAKCGSI+RAIEVF G++DRD+STW+TLI GLA H AE SI
Sbjct: 308 SSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIE 366
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVE 416
MF EMQRLKV P E+TF+GV++ACSH+G+V+EG+KYF LMRD YNIEPNI+HYG D+
Sbjct: 367 MFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDM- 425
Query: 417 LGR 419
LGR
Sbjct: 426 LGR 428
|
|
| TAIR|locus:2019160 AT1G74630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 159/417 (38%), Positives = 249/417 (59%)
Query: 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKI 65
H L C NLR L QI L G ++DS +LI ++ I A+ YA ++ +
Sbjct: 6 HHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCF 65
Query: 66 TEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM-EKCSIKPNKFTFSFVLKACTRLLYRNMG 124
EPD FM+NT++RG ++S P ++V ++ +M K + P+ F+F+FV+KA G
Sbjct: 66 PEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTG 125
Query: 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184
F +H + +K+G E + FV +LI + CG + A +FD + ++VAW+++ R
Sbjct: 126 FQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRG 185
Query: 185 GELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV 244
+++ AR +FD+M VR+ SWNVM+ GY K GE+E A +F+E+P RD VSW+ MI G
Sbjct: 186 NDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIA 245
Query: 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV 304
G ++ F E++ G P++V++ +L+AC+ G E GK +H + +G + +
Sbjct: 246 HNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFV--EKAGYSWI 303
Query: 305 LH-GNALIDMYAKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362
+ NALIDMY++CG++ A VF GM++ R + +W+++I GLA HG EE++ +F EM
Sbjct: 304 VSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMT 363
Query: 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGR 419
V P I+F+ +L ACSHAG +EEG+ YF M+ Y+IEP I HYG D+ GR
Sbjct: 364 AYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDL-YGR 419
|
|
| TAIR|locus:2117084 AT4G18840 "AT4G18840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 160/453 (35%), Positives = 264/453 (58%)
Query: 13 KKCTNLRTLKQIQALVTING-FNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTF 71
++ +L ++Q A + G F+ SA + + ++ + P ++YAH + +I P+ F
Sbjct: 47 ERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGF 106
Query: 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131
+N++IR A S P A+ ++ +M + P+K++F+FVLKAC G +HG
Sbjct: 107 THNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLF 166
Query: 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMAR 191
+K G + FV N+L+ + G A + D D V+W+SL + Y +G + AR
Sbjct: 167 IKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEAR 226
Query: 192 SLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQ 251
+LFDEM R++ SWN MI+GYA G +++A E+F+ +P RDVVSWNAM++ Y G +
Sbjct: 227 ALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNE 286
Query: 252 ALEMFEEMRSVG-ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
LE+F +M E+PD T++S+L+ACA LG L G+ VH +D + AL
Sbjct: 287 VLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVH-VYIDKHGIEIEGFLATAL 345
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+DMY+KCG I++A+EVF RDVSTW+++I L+ HG ++++ +F EM +P
Sbjct: 346 VDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNG 405
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLAN----KRLL 426
ITF+GVL AC+H G +++ +K F++M Y +EP I HYG D+ LGR+ + L+
Sbjct: 406 ITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDL-LGRMGKIEEAEELV 464
Query: 427 N-MRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458
N + DE+ +LL ++ + + ++E+ ++
Sbjct: 465 NEIPADEAS--ILLESLLGACKRFGQLEQAERI 495
|
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| TAIR|locus:2010652 AT1G04840 "AT1G04840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 152/486 (31%), Positives = 259/486 (53%)
Query: 15 CTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYN 74
C + +L+ + A + G S S +L+ S++ + +Y+ +F E + F+ N
Sbjct: 39 CKDTASLRHVHAQILRRGVLS-SRVAAQLVSCSSLL--KSPDYSLSIFRNSEERNPFVLN 95
Query: 75 TIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134
+IRG ++ +V + M + +KP++ TF FVLK+ ++L +R +G +H +K
Sbjct: 96 ALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKN 155
Query: 135 GFEFNRFVRNSLIYFHANCGDLNTASVLF----DGDAKMDVVAWSSLTAGYARRGELSMA 190
+ + FVR SL+ +A G L A +F D K ++ W+ L GY R ++ MA
Sbjct: 156 FVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMA 215
Query: 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNK 250
+LF MP R+ SW+ +I GY GE+ +A +LF +P+++VVSW +I+G+ G +
Sbjct: 216 TTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYE 275
Query: 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310
A+ + EM G +P++ T+ ++L+AC+ G L G ++H +LD + + + G AL
Sbjct: 276 TAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAI-GTAL 334
Query: 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370
+DMYAKCG ++ A VF M +D+ +W+ +I G A HG ++I FR+M +P E
Sbjct: 335 VDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDE 394
Query: 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRK 430
+ F+ VL AC ++ +V+ G +F MR +Y IEP ++HY + D+ LGR A K LN
Sbjct: 395 VVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDL-LGR-AGK--LN--- 447
Query: 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFNLKPK 490
E+ + V I W + + K + +L+E D + Y+F K
Sbjct: 448 -EAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTH 506
Query: 491 PNSGNL 496
+ GN+
Sbjct: 507 ASKGNI 512
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| TAIR|locus:2181201 AT5G27110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 9.2e-58, Sum P(2) = 9.2e-58
Identities = 89/241 (36%), Positives = 140/241 (58%)
Query: 208 MITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267
+I Y K GE A +F++ K SWN MIS Y+ G +A+E++++M SVG +PD
Sbjct: 350 LIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPD 409
Query: 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327
VT S+L AC+ L LE GK++H ++ + ++L +AL+DMY+KCG+ + A +F
Sbjct: 410 VVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLL-SALLDMYSKCGNEKEAFRIF 468
Query: 328 LGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387
+ +DV +W+ +I HG E++ F EMQ+ ++P +T + VL AC HAG ++
Sbjct: 469 NSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLID 528
Query: 388 EGKKYFKLMRDEYNIEPNIRHYGVHGDV--ELGRLANKRLLNMRKDESGDYV-LLSNIYA 444
EG K+F MR +Y IEP I HY D+ GRL + + E+ D LLS +++
Sbjct: 529 EGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFS 588
Query: 445 S 445
+
Sbjct: 589 A 589
|
|
| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 133/339 (39%), Positives = 203/339 (59%)
Query: 103 PNKFTFSFVLKACTR-LLYRNMGFCVHGKIVKYGFEF-NRFVRNSLIYFHANCGDLNTAS 160
PN F ++ +++A T LY ++ ++ ++++ FE +RF + + +C L +
Sbjct: 71 PNVFLYNSIIRAYTHNSLYCDV-IRIYKQLLRKSFELPDRF---TFPFMFKSCASLGSCY 126
Query: 161 V-------LFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYA 213
+ L + VV ++L Y + +L A +FDEM RD++SWN +++GYA
Sbjct: 127 LGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYA 186
Query: 214 KQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273
+ G+M+KA LF+ + + +VSW AMISGY G +A++ F EM+ G PD+++++S
Sbjct: 187 RLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLIS 246
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG-NALIDMYAKCGSIERAIEVFLGMRD 332
+L +CA LG LE+GK +H L G K NALI+MY+KCG I +AI++F M
Sbjct: 247 VLPSCAQLGSLELGKWIH--LYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEG 304
Query: 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392
+DV +WST+I G A+HG A +I F EMQR KV+P ITF+G+L ACSH G +EG +Y
Sbjct: 305 KDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRY 364
Query: 393 FKLMRDEYNIEPNIRHYGVHGDVELGRLAN-KRLLNMRK 430
F +MR +Y IEP I HYG DV L R +R + + K
Sbjct: 365 FDMMRQDYQIEPKIEHYGCLIDV-LARAGKLERAVEITK 402
|
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| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 127/307 (41%), Positives = 182/307 (59%)
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229
DV A +SL YA G +A LFD +P D VSWN +I GY K G+M+ A LF ++
Sbjct: 149 DVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMA 208
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
+++ +SW MISGYV MNK+AL++F EM++ PD+V++ + L+ACA LG LE GK
Sbjct: 209 EKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKW 268
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349
+H L + VL G LIDMYAKCG +E A+EVF ++ + V W+ LI G A+HG
Sbjct: 269 IHSYLNKTRIRMDSVL-GCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHG 327
Query: 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409
E+I+ F EMQ++ ++P ITF VL ACS+ G VEEGK F M +YN++P I HY
Sbjct: 328 HGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHY 387
Query: 410 GVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPG 469
G D+ LGR LL DE+ ++ + + W + K ++ + ++ ++ G
Sbjct: 388 GCIVDL-LGRAG---LL----DEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIG 439
Query: 470 CSLIEAD 476
LI D
Sbjct: 440 EILIAID 446
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| TAIR|locus:2161018 AT5G56310 "AT5G56310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 126/309 (40%), Positives = 183/309 (59%)
Query: 119 LYRNM-GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL 177
+YR + C + F VR S ++F ++ V+F D+ + VV + L
Sbjct: 103 VYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQ---IHGQVVVFGFDSSVHVV--TGL 157
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP--KRDVVS 235
Y G L AR +FDEM V+D+ WN ++ GY K GEM++A L +P R+ VS
Sbjct: 158 IQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVS 217
Query: 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295
W +ISGY G +A+E+F+ M PD+VT+L++L+ACADLG LE+G+++ C+ +
Sbjct: 218 WTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERI-CSYV 276
Query: 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESI 355
D V NA+IDMYAK G+I +A++VF + +R+V TW+T+I GLA HG E++
Sbjct: 277 DHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEAL 336
Query: 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV 415
AMF M + VRP ++TF+ +L ACSH G V+ GK+ F MR +Y I PNI HYG D+
Sbjct: 337 AMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDL 396
Query: 416 ELGRLANKR 424
LGR R
Sbjct: 397 -LGRAGKLR 404
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| TAIR|locus:2010012 AT1G13410 "AT1G13410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 126/320 (39%), Positives = 187/320 (58%)
Query: 155 DLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAK 214
DL +A FD + D+V W+++ +GY G + ARSLFD+MP RD++SWN ++ GYA
Sbjct: 74 DLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYAN 133
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PDDVTMLS 273
G+ME +F+++P+R+V SWN +I GY G + L F+ M G P+D TM
Sbjct: 134 IGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTL 193
Query: 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG--NALIDMYAKCGSIERAIEVFLGMR 331
+L+ACA LG + GK VH T G KV NALIDMY KCG+IE A+EVF G++
Sbjct: 194 VLSACAKLGAFDFGKWVH--KYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIK 251
Query: 332 DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
RD+ +W+T+I GLA HG E++ +F EM+ + P ++TFVGVL AC H G VE+G
Sbjct: 252 RRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLA 311
Query: 392 YFKLMRDEYNIEPNIRHYGVHGDV--ELGRLANK-RLLNMRKDESGDYVLLSNIYASRGE 448
YF M +++I P I H G D+ G L +N + D V+ + + +
Sbjct: 312 YFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFIN-KMPVKADAVIWATLLGASKV 370
Query: 449 WNRVEKVRKLMDDSDIKKQP 468
+ +V+ + ++ + IK +P
Sbjct: 371 YKKVD-IGEVALEELIKLEP 389
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| TAIR|locus:2094812 AT3G29230 "AT3G29230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 128/406 (31%), Positives = 229/406 (56%)
Query: 69 DTFMYNTIIRG-SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127
D F Y +++ S QS P+ ++ +EK + + + + ++ +R +G
Sbjct: 116 DNFTYPFLLKACSGQSWLPV-VKMMHNHIEKLGLSSDIYVPNALIDCYSRC--GGLGVRD 172
Query: 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187
K+ + E + NS++ G+L A LFD + D+++W+++ GYAR E+
Sbjct: 173 AMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREM 232
Query: 188 SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP--KRDVVSWNAMISGYVL 245
S A LF++MP R+ VSW+ M+ GY+K G+ME A +F+++P ++VV+W +I+GY
Sbjct: 233 SKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAE 292
Query: 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AKV 304
G+ K+A + ++M + G + D ++S+L AC + G L +G ++H L G A V
Sbjct: 293 KGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYV 352
Query: 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364
L NAL+DMYAKCG++++A +VF + +D+ +W+T++ GL HG +E+I +F M+R
Sbjct: 353 L--NALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRRE 410
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV--ELGRLAN 422
+RP ++TF+ VL +C+HAG ++EG YF M Y++ P + HYG D+ +GRL
Sbjct: 411 GIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKE 470
Query: 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQP 468
+ + V+ + + N V+ ++++D+ +K P
Sbjct: 471 AIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNL-VKLDP 515
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LXF2 | PP385_ARATH | No assigned EC number | 0.5493 | 0.9879 | 0.8978 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00020997001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (515 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 498 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-75 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-65 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-60 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-38 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-34 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-28 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 254 bits (649), Expect = 2e-75
Identities = 158/545 (28%), Positives = 261/545 (47%), Gaps = 85/545 (15%)
Query: 17 NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI 76
+L +++ A V GF D + LI V G + A +F ++ D +N +
Sbjct: 202 DLARGREVHAHVVRFGFELDVDVVNALI--TMYVKCGDVVSARLVFDRMPRRDCISWNAM 259
Query: 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF 136
I G ++ L+ + L+ M + S+ P+ T + V+ AC L +G +HG +VK GF
Sbjct: 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319
Query: 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRG----------- 185
+ V NSLI + + G A +F D V+W+++ +GY + G
Sbjct: 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL 379
Query: 186 ---------ELSMARSL--------------FDEMPVRD-LVSW----NVMITGYAKQGE 217
E+++A L E+ R L+S+ N +I Y+K
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
Query: 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
++KA E+F+ +P++DV+SW ++I+G L +AL F +M + +P+ VT+++ L+A
Sbjct: 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSA 498
Query: 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVST 337
CA +G L GK++H +L G L NAL+D+Y +CG + A F ++DV +
Sbjct: 499 CARIGALMCGKEIHAHVLRTGIGFDGFL-PNALLDLYVRCGRMNYAWNQF-NSHEKDVVS 556
Query: 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397
W+ L+ G HG ++ +F M V P E+TF+ +L ACS +G V +G +YF M
Sbjct: 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616
Query: 398 DEYNIEPNIRHYG---------------------------------------VHGDVELG 418
++Y+I PN++HY +H VELG
Sbjct: 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676
Query: 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
LA + + + + G Y+LL N+YA G+W+ V +VRK M ++ + PGCS +E K
Sbjct: 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736
Query: 479 --AFL 481
AFL
Sbjct: 737 VHAFL 741
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 3e-65
Identities = 119/378 (31%), Positives = 201/378 (53%), Gaps = 41/378 (10%)
Query: 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112
G + +A +F K+ E D F +N ++ G A++ +A+ LY +M ++P+ +TF VL
Sbjct: 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194
Query: 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172
+ C + G VH +V++GFE + V N+LI + CGD+ +A ++FD + D +
Sbjct: 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCI 254
Query: 173 AWSSLTAGYARRGELSMARSLF--------------------------DEMPVRDLVSW- 205
+W+++ +GY GE LF DE R++ +
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314
Query: 206 ------------NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL 253
N +I Y G +A ++F+ + +D VSW AMISGY G+ +AL
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374
Query: 254 EMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313
E + M PD++T+ S+L+ACA LGDL+VG K+H L + ++ V+ NALI+M
Sbjct: 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH-ELAERKGLISYVVVANALIEM 433
Query: 314 YAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
Y+KC I++A+EVF + ++DV +W+++I GL + E++ FR+M L ++P +T
Sbjct: 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTL 492
Query: 374 VGVLVACSHAGKVEEGKK 391
+ L AC+ G + GK+
Sbjct: 493 IAALSACARIGALMCGKE 510
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (535), Expect = 2e-60
Identities = 119/461 (25%), Positives = 204/461 (44%), Gaps = 85/461 (18%)
Query: 99 CSIKPNKFTFSFVLKACTRLLYRNMGFC--VHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156
C T+ +++AC L +++ V+ + GFE ++++ N ++ H CG L
Sbjct: 117 CPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174
Query: 157 NTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEM-------PVRDLV------ 203
A LFD + ++ +W ++ G G A +LF EM R V
Sbjct: 175 IDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234
Query: 204 --SWNV------------------------MITGYAKQGEMEKANELFNEVPKRDVVSWN 237
+ +I Y+K G++E A +F+ +P++ V+WN
Sbjct: 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWN 294
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297
+M++GY L G +++AL ++ EMR G D T ++ + L LE K+ H L+
Sbjct: 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI-- 352
Query: 298 TSGVAKVLHGN-ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIA 356
+G + N AL+D+Y+K G +E A VF M +++ +W+ LI G HG +++
Sbjct: 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVE 412
Query: 357 MFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG------ 410
MF M V P +TF+ VL AC ++G E+G + F+ M + + I+P HY
Sbjct: 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472
Query: 411 ---------------------------------VHGDVELGRLANKRLLNMRKDESGDYV 437
+H ++ELGRLA ++L M ++ +YV
Sbjct: 473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532
Query: 438 LLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDK 478
+L N+Y S G KV + + + P C+ IE +
Sbjct: 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQ 573
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 4e-38
Identities = 96/361 (26%), Positives = 162/361 (44%), Gaps = 40/361 (11%)
Query: 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK 133
N+ +R A+ L M++ + ++ + + + C G V + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSL 193
+ N+++ G+L A +F + D+ +W+ L GYA+ G A L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 194 FDEM------P----------------------------VR-----DLVSWNVMITGYAK 214
+ M P VR D+ N +IT Y K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274
G++ A +F+ +P+RD +SWNAMISGY G + LE+F MR + PD +T+ S+
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRD 334
++AC LGD +G+++H ++ T V N+LI MY GS A +VF M +D
Sbjct: 295 ISACELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353
Query: 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFK 394
+W+ +I G +G ++++ + M++ V P EIT VL AC+ G ++ G K +
Sbjct: 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413
Query: 395 L 395
L
Sbjct: 414 L 414
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 6e-34
Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 10/251 (3%)
Query: 150 HANCGDLNTASVLFD-----GDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR---- 200
CG A LF+ + + +L + ++++ +
Sbjct: 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
D N ++ + K G + A LF+E+P+R++ SW +I G V G ++A +F EM
Sbjct: 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320
G + T + +L A A LG G+++HC +L T V ALIDMY+KCG I
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK-TGVVGDTFVSCALIDMYSKCGDI 275
Query: 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380
E A VF GM ++ W++++ G A HG++EE++ ++ EM+ V + TF ++
Sbjct: 276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335
Query: 381 SHAGKVEEGKK 391
S +E K+
Sbjct: 336 SRLALLEHAKQ 346
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 2e-28
Identities = 78/262 (29%), Positives = 117/262 (44%), Gaps = 35/262 (13%)
Query: 206 NVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265
N M++ + + GE+ A +F ++P+RD+ SWN ++ GY G +AL ++ M G R
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLL--DMTSGVAKVLHGNALIDMYAKCGSIERA 323
PD T +L C + DL G++VH ++ V V NALI MY KCG + A
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV---NALITMYVKCGDVVSA 241
Query: 324 IEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383
VF M RD +W+ +I G +G E + +F M+ L V P +T V+ AC
Sbjct: 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301
Query: 384 GKVEEGKKYFKLMRDEYNIEPNIRHYGVHG-DVELGRLANKRLLNMRKDESGDYVLLSNI 442
G G++ +HG V+ G + + N L +
Sbjct: 302 GDERLGRE-------------------MHGYVVKTGFAVDVSVCNS----------LIQM 332
Query: 443 YASRGEWNRVEKVRKLMDDSDI 464
Y S G W EKV M+ D
Sbjct: 333 YLSLGSWGEAEKVFSRMETKDA 354
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 9e-12
Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 6/157 (3%)
Query: 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDV-TMLSLLTACADLGDLEVGKKVHCTLLD 296
+ I V CG +++ALE+FE + + T +L+ AC L + K V+ +
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHV-- 149
Query: 297 MTSGV--AKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354
+SG + + N ++ M+ KCG + A +F M +R++++W T+IGGL G E+
Sbjct: 150 ESSGFEPDQYMM-NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREA 208
Query: 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391
A+FREM TFV +L A + G G++
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 3e-11
Identities = 71/361 (19%), Positives = 150/361 (41%), Gaps = 63/361 (17%)
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVF-LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126
D +Y T+I A+S +DA+F ++ +M ++ N TF ++ C R F
Sbjct: 470 ADCKLYTTLISTCAKS-GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528
Query: 127 VHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM---------DVVAWSSL 177
+G + + +R V N+LI + CG FD A+M D + +L
Sbjct: 529 AYGIMRSKNVKPDRVVFNALI---SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585
Query: 178 TAGYARRGELSMARSLFDEMPVRDLVS----WNVMITGYAKQGEMEKANELFNEVPKRDV 233
A G++ A+ ++ + ++ + + + +++G+ + A +++++ K+ V
Sbjct: 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645
Query: 234 ----VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289
V ++A++ G +A E+ ++ R G + V+ SL+ AC++ + +
Sbjct: 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK---- 701
Query: 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRD----VSTWSTLIGGL 345
+A+E++ ++ VST + LI L
Sbjct: 702 --------------------------------KALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 346 AFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405
+++ + EM+RL + P IT+ +LVA + G +++ I+PN
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPN 788
Query: 406 I 406
+
Sbjct: 789 L 789
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 4e-10
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280
DVV++N +I GY G ++AL++F EM+ G +P+ T L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 22/253 (8%)
Query: 61 MFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQM--EKCSIKPNKFTFSFVLKACTRL 118
M K +PD ++N +I QS A + +M E I P+ T ++KAC
Sbjct: 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592
Query: 119 LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV----VAW 174
+ V+ I +Y + V + + GD + A ++D K V V +
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 175 SSL--TAGYARRGELSMARSLFDEMPVRDL----VSWNVMITGYAKQGEMEKANELFNEV 228
S+L AG+A L A + + + + VS++ ++ + +KA EL+ ++
Sbjct: 653 SALVDVAGHAGD--LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 229 P----KRDVVSWNAMISGYVLCGMNK--QALEMFEEMRSVGERPDDVTMLSLLTACADLG 282
+ V + NA+I+ LC N+ +ALE+ EM+ +G P+ +T LL A
Sbjct: 711 KSIKLRPTVSTMNALITA--LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768
Query: 283 DLEVGKKVHCTLL 295
D +VG +
Sbjct: 769 DADVGLDLLSQAK 781
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 1e-09
Identities = 19/47 (40%), Positives = 34/47 (72%), Gaps = 4/47 (8%)
Query: 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKR----DVVSWNAMISGY 243
D+V++N +I GY K+G++E+A +LFNE+ KR +V +++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 5e-08
Identities = 66/313 (21%), Positives = 136/313 (43%), Gaps = 37/313 (11%)
Query: 183 RRGELSMARSLFDEMPVRDLVSWNVMITGYAK-------QGEMEKANELFNEVPKRDVVS 235
R G + L ++M R L+ + +AK Q +++A + + +
Sbjct: 382 RDGRIKDCIDLLEDMEKRGLLD--MDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLST 439
Query: 236 WNAMISGYVLCGMNKQ---ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292
+N ++S +C ++ AL + ++ G + D +L++ CA G ++ +V
Sbjct: 440 FNMLMS---VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV-- 494
Query: 293 TLLDM-TSGVAKVLHG-NALIDMYAKCGSIERAIEVFLGMRDRDVS----TWSTLIGGLA 346
+M +GV +H ALID A+ G + +A + MR ++V ++ LI
Sbjct: 495 -FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 347 FHGFAEESIAMFREM--QRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIE- 403
G + + + EM + + P IT ++ AC++AG+V+ K+ ++++ EYNI+
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH-EYNIKG 612
Query: 404 -PNIRHYGVH-----GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457
P + V+ GD + + +K D V S + G ++K +
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMK--KKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 458 LMDDSDIKK-QPG 469
++ D+ + + G
Sbjct: 671 ILQDARKQGIKLG 683
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 170 DVVAWSSLTAGYARRGELSMARSLFDEMPVR----DLVSWNVMITGYAK 214
DVV +++L GY ++G++ A LF+EM R ++ +++++I G K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 4e-07
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115
PD YNT+I G + +A+ L+ +M+K IKPN +T+S ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373
DV T++TLI G G EE++ +F EM++ ++P T+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVG 263
V++N++ISGY G ++ALE+F+EM+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDV 233
V++N +I+GY K G++E+A ELF E+ ++ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDR----DVSTWSTLIGGLA 346
N LID Y K G +E A+++F M+ R +V T+S LI GL
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260
K DVV++N +I G G +A+E+ +EM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 5e-04
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268
V++N +I G G ++ALE+F+EM+ G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVV 234
V++N +I G K G +E+A ELF E+ +R +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKV 366
T+++LI G G EE++ +F+EM+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.003
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 199 VRDLVSWNVMITGYAKQGEMEKANELFNE 227
D+V++N +I G + G +++A EL +E
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 498 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.55 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.54 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.52 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.51 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.51 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.48 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.48 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.41 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.41 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.33 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.31 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.27 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.26 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.25 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.2 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.18 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.17 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.17 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.15 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.15 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.15 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.12 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.08 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.08 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.06 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.03 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.02 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.02 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.01 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.0 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.0 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.99 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.9 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.9 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.9 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.89 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.88 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.87 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.87 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.85 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.84 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.8 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.78 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.77 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.77 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.76 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.71 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.66 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.66 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.65 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.64 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.64 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.62 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.61 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.6 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.58 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.52 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.49 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.46 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.44 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.42 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.41 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.39 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.37 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.34 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.33 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.31 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.26 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.26 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.25 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.24 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.22 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.2 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.19 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.13 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.09 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.09 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.06 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.05 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.0 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.99 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.96 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.94 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.94 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.92 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.92 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.9 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.88 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.88 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.87 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.87 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.85 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.84 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.84 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.84 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.83 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.81 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.77 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.76 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.72 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.71 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.69 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.67 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.67 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.66 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.65 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.64 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.61 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.6 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.56 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.51 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.5 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.49 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.48 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.45 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.43 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.43 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.43 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.43 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.43 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.41 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.39 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.37 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.34 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.33 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.3 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.3 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.28 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.26 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.24 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.24 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.22 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.22 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.2 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.19 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.11 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.07 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.07 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.07 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.99 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.97 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.96 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.95 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.93 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.89 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.88 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.87 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.81 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.78 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.74 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.73 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.67 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.62 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.5 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.49 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.42 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.34 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.31 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.29 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.29 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.28 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.15 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.08 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.99 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.98 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.96 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.92 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.91 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.9 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.85 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.85 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.85 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.84 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.79 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.68 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.56 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.52 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.52 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.45 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.42 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.42 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.41 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.41 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.37 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.31 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.31 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.27 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.2 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.07 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.97 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.92 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.92 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.82 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.81 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.81 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.66 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.37 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.36 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.33 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.29 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.16 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.12 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.06 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.98 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.94 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.82 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.77 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.74 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.67 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.61 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.24 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.16 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.08 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.86 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.66 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.63 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.62 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.43 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.23 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.22 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.1 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.91 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.67 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.6 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.53 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.2 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.14 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.07 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.87 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.87 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.86 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.77 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.64 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.43 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.38 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.33 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.33 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.22 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.01 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.94 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.88 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.79 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.7 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.54 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 89.0 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.91 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.78 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.4 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.38 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.25 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.03 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.89 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.76 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.75 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.73 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.3 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.21 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 87.02 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 86.0 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 85.83 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 85.82 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.71 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.53 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 85.2 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.13 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 85.0 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.98 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 84.61 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.6 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 84.54 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 84.43 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.32 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.29 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.13 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.62 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.6 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.14 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.05 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 83.02 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 83.01 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 82.76 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 82.43 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.32 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.2 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 82.17 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 82.04 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 80.63 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 80.37 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.02 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-73 Score=587.17 Aligned_cols=489 Identities=31% Similarity=0.560 Sum_probs=461.6
Q ss_pred CCcccchHHHHHHhh---chhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHH
Q 041942 2 RTNRHRSSRLWKKCT---NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIR 78 (498)
Q Consensus 2 ~~~~~~~~~~l~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 78 (498)
+|+..+|..++.+|+ +++.+++++..+.+.|+.||+.+++.+|. +|++ .|++++|.++|+.|+.||..+||.+|.
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~-~y~k-~g~~~~A~~lf~~m~~~d~~s~n~li~ 261 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT-MYVK-CGDVVSARLVFDRMPRRDCISWNAMIS 261 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHH-HHhc-CCCHHHHHHHHhcCCCCCcchhHHHHH
Confidence 588999999999996 45678999999999999999999999999 9999 999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhH
Q 041942 79 GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNT 158 (498)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 158 (498)
+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCCc--------------------------------
Q 041942 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP----VRDL-------------------------------- 202 (498)
Q Consensus 159 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~-------------------------------- 202 (498)
|.++|++|..+|..+|+.++.+|++.|++++|+++|++|. .||.
T Consensus 342 A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 421 (857)
T PLN03077 342 AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421 (857)
T ss_pred HHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999985 4444
Q ss_pred ---chHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 041942 203 ---VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279 (498)
Q Consensus 203 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 279 (498)
.+|+.|+++|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|+
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 45566778889999999999999999999999999999999999999999999999986 58999999999999999
Q ss_pred ccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Q 041942 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (498)
+.|+++.+.+++ ..+.+.|..++..++++|+++|++.|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|+
T Consensus 501 ~~g~l~~~~~i~-~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 501 RIGALMCGKEIH-AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred hhchHHHhHHHH-HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999 77788999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH-------hhC-------------------
Q 041942 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------VHG------------------- 413 (498)
Q Consensus 360 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~-------~~g------------------- 413 (498)
+|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+..|+.|+..+|. +.|
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~ 658 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPA 658 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHH
Confidence 999999999999999999999999999999999999996689999977776 444
Q ss_pred -------------ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCceeEEEecCCee
Q 041942 414 -------------DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAF 480 (498)
Q Consensus 414 -------------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 480 (498)
+.+.|+.+.+++++++|+++..|..|++.|...|+|++|.++.+.|+++|+++.||+|||++. +.+
T Consensus 659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~-~~~ 737 (857)
T PLN03077 659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK-GKV 737 (857)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC-CEE
Confidence 455555555566778899999999999999999999999999999999999999999999999 999
Q ss_pred EEEecCCCCCCCCCCC
Q 041942 481 LQYLFNLKPKPNSGNL 496 (498)
Q Consensus 481 ~~~~~~~~~~~~~~~~ 496 (498)
|.|..||++||.+++|
T Consensus 738 ~~f~~~d~~h~~~~~i 753 (857)
T PLN03077 738 HAFLTDDESHPQIKEI 753 (857)
T ss_pred EEEecCCCCCcchHHH
Confidence 9999999999999887
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-66 Score=524.86 Aligned_cols=455 Identities=26% Similarity=0.400 Sum_probs=386.5
Q ss_pred CcChHHHHHHHHhhhhccCCChHHHHHhcccCC-----CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhH
Q 041942 34 NSDSSALRELIYSGSVVIPGAINYAHKMFVKIT-----EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTF 108 (498)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 108 (498)
.++...++.+|. .+.+ .|++++|.++|++|. .||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|
T Consensus 84 ~~~~~~~~~~i~-~l~~-~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 84 RKSGVSLCSQIE-KLVA-CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CCCceeHHHHHH-HHHc-CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 334557778887 7777 888888888887774 467788888888888888888888888888888888888888
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCC----CCCcchHHHHHHHHHhc
Q 041942 109 SFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA----KMDVVAWSSLTAGYARR 184 (498)
Q Consensus 109 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~ 184 (498)
+.|+.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.+|++.
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 888888888888888888888875 4678888888888888888888888887664 36777888888888888
Q ss_pred CChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 041942 185 GELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260 (498)
Q Consensus 185 ~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 260 (498)
|..+.+.+++..+. .+|..+|+.|+++|++.|++++|.++|+.|.++|.++|+.++.+|++.|++++|+++|++|.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88888887776665 67888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH
Q 041942 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWST 340 (498)
Q Consensus 261 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 340 (498)
+.|+.||..||+.++.+|++.|+++.|.+++ ..+.+.+..|+..++++|+++|++.|++++|.++|++|.++|..+||.
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~-~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAH-AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHH-HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 8888888888888888888888888888888 666777888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH----------
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---------- 410 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~---------- 410 (498)
||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.++.|+.|+..+|.
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888888888888888877678888765554
Q ss_pred -----------------------------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 411 -----------------------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 411 -----------------------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
..|+++.|+.+++++.++.|++..+|..|+.+|.+.|++++|.+++++|++
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 566777777777788888999999999999999999999999999999999
Q ss_pred CCCccCCceeEEEecCCeeEEEecCCCCCCCCCCC
Q 041942 462 SDIKKQPGCSLIEADDKAFLQYLFNLKPKPNSGNL 496 (498)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (498)
+|+.+.||+||+++. +.+|.|..||.+||..++|
T Consensus 557 ~g~~k~~g~s~i~~~-~~~~~f~~~d~~h~~~~~i 590 (697)
T PLN03081 557 KGLSMHPACTWIEVK-KQDHSFFSGDRLHPQSREI 590 (697)
T ss_pred cCCccCCCeeEEEEC-CeEEEEccCCCCCccHHHH
Confidence 999999999999999 9999999999999998876
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-64 Score=521.95 Aligned_cols=460 Identities=28% Similarity=0.471 Sum_probs=436.9
Q ss_pred CCcccchHHHHHHhh---chhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHH
Q 041942 2 RTNRHRSSRLWKKCT---NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIR 78 (498)
Q Consensus 2 ~~~~~~~~~~l~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 78 (498)
+|+..++..++..|. ....+.+++..+.+.|..++..+++.+|. .|++ .|+++.|.++|+.|++||+.+||.+|.
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~-~~~~-~g~~~~A~~~f~~m~~~d~~~~n~li~ 160 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS-MFVR-FGELVHAWYVFGKMPERDLFSWNVLVG 160 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH-HHHh-CCChHHHHHHHhcCCCCCeeEHHHHHH
Confidence 467778888888885 45678899999999999999999999999 9999 999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhH
Q 041942 79 GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNT 158 (498)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 158 (498)
+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.|+..+++.|+.+|++.|++++
T Consensus 161 ~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 240 (857)
T PLN03077 161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC----C-----------------------------------
Q 041942 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP----V----------------------------------- 199 (498)
Q Consensus 159 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~----------------------------------- 199 (498)
|.++|++|..+|..+|++++.+|++.|++++|+++|++|. .
T Consensus 241 A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 320 (857)
T PLN03077 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA 320 (857)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999985 2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 041942 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279 (498)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 279 (498)
||..+|+.++.+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHh
Confidence 45667777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Q 041942 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (498)
+.|+++.|.+++ ..+.+.|..++..++++|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|+
T Consensus 401 ~~g~~~~a~~l~-~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 401 CLGDLDVGVKLH-ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred ccchHHHHHHHH-HHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999 7888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-------hhHHHhhCChHHHHHHHHHHHccCCCC
Q 041942 360 EMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-------IRHYGVHGDVELGRLANKRLLNMRKDE 432 (498)
Q Consensus 360 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~y~~~g~~~~a~~~~~~~~~~~~~~ 432 (498)
+|.. +++||..||..++.+|++.|+++.+.+++..+.+ .|+.++ +..|.++|++++|.+.|+.+ ++|
T Consensus 480 ~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d 553 (857)
T PLN03077 480 QMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKD 553 (857)
T ss_pred HHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCC
Confidence 9986 5899999999999999999999999999999999 899998 67788999999999999986 678
Q ss_pred CchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCce
Q 041942 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGC 470 (498)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 470 (498)
..+|+.|+.+|.+.|+.++|+++|++|.+.|+.|+...
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 89999999999999999999999999999999876544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=493.25 Aligned_cols=458 Identities=16% Similarity=0.222 Sum_probs=408.1
Q ss_pred cchHHHHHH---hhchhhhHHHHHHHHHhcC-CcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHh
Q 041942 6 HRSSRLWKK---CTNLRTLKQIQALVTINGF-NSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSA 81 (498)
Q Consensus 6 ~~~~~~l~~---~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 81 (498)
..+..++.+ +|+++.|.++++.|.+.|+ .++..+++.++. .+.+ .|.+++|.++|+.|..||..+|+.+|.+|+
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~-~~~~-~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFK-ACKK-QRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HHHH-CCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344444444 4899999999999999996 567777777888 8888 999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHH
Q 041942 82 QSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASV 161 (498)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 161 (498)
+.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCC----CCCcchHHHHHHHHHhcCChHHHHHHHhcCC------CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-
Q 041942 162 LFDGDA----KMDVVAWSSLTAGYARRGELSMARSLFDEMP------VRDLVSWNVMITGYAKQGEMEKANELFNEVPK- 230 (498)
Q Consensus 162 ~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 230 (498)
+|+.|. .||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.+
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 998774 4899999999999999999999999999994 68999999999999999999999999999975
Q ss_pred ---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhH
Q 041942 231 ---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307 (498)
Q Consensus 231 ---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (498)
|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.+++ ..+.+.+..|+..+|
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~-~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL-QDARKQGIKLGTVSY 687 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH-HHHHHcCCCCCHHHH
Confidence 6779999999999999999999999999999999999999999999999999999999999 777788999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMR----DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 383 (498)
+.||.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999985 5899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhHHH-----------hh-------------------CChHHHHHHHHHHHccC----
Q 041942 384 GKVEEGKKYFKLMRDEYNIEPNIRHYG-----------VH-------------------GDVELGRLANKRLLNMR---- 429 (498)
Q Consensus 384 g~~~~a~~~~~~~~~~~~~~p~~~~y~-----------~~-------------------g~~~~a~~~~~~~~~~~---- 429 (498)
|+++.|.+++++|.+ .|+.||..+|. ++ +..+.|..+|++|++..
T Consensus 768 G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 768 DDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 999999999999998 89999966654 11 12345667777666422
Q ss_pred --------------------------------CCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCc
Q 041942 430 --------------------------------KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPG 469 (498)
Q Consensus 430 --------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 469 (498)
+++..+|+.++.++.+. .++|..++++|.+.|+.|+-.
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 22345677777776321 357999999999999887654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=485.26 Aligned_cols=423 Identities=16% Similarity=0.226 Sum_probs=287.0
Q ss_pred CcccchHHHHHHh---hchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC----CCChhhHHH
Q 041942 3 TNRHRSSRLWKKC---TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT----EPDTFMYNT 75 (498)
Q Consensus 3 ~~~~~~~~~l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ 75 (498)
|+..+|..++..| |+.+.|.+++..|.+.|+.||..+|+.+|. .|++ .|++++|.++|++|. .||..+|+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~-~y~k-~G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIS-TCAK-SGKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHh-CcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 5556666666655 355566777777777777777777777777 6777 777777777777765 567777777
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHH--hCCCCChHHHHHHHHHHHhc
Q 041942 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK--YGFEFNRFVRNSLIYFHANC 153 (498)
Q Consensus 76 ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ 153 (498)
+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 7777777777777777777777777777777777777777777777777777777765 45667777777777777777
Q ss_pred CChhHHHHhhccCCC----CCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHH
Q 041942 154 GDLNTASVLFDGDAK----MDVVAWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELF 225 (498)
Q Consensus 154 g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~ 225 (498)
|++++|.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 777777777765543 455667777777777777777777777766 566667777777777777777777777
Q ss_pred hhCCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCC
Q 041942 226 NEVPK----RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301 (498)
Q Consensus 226 ~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 301 (498)
+.|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++| ..|...|..
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf-~eM~~~Gi~ 751 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL-SEMKRLGLC 751 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHcCCC
Confidence 76653 5666777777777777777777777777776677777777777777777777777777777 455556667
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHh----C-------------------CCHHHH
Q 041942 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMR----DRDVSTWSTLIGGLAF----H-------------------GFAEES 354 (498)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~----~-------------------~~~~~A 354 (498)
||..+|+.++.+|++.|++++|.++|..|. .||..+|+.++..|.+ . +..+.|
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 777777777777777777777777776665 2566677776654321 0 112456
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH----hhCC-hHHHHHHHHHHHccC
Q 041942 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG----VHGD-VELGRLANKRLLNMR 429 (498)
Q Consensus 355 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~----~~g~-~~~a~~~~~~~~~~~ 429 (498)
..+|++|++.|+.||..||+.++.++++.+..+.+..+++.|.. .+..|+..+|. -.|+ .++|..+++++.+..
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcC
Confidence 67777777777777777777777666666666666666666555 45555555555 3343 358999999999654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-58 Score=467.11 Aligned_cols=461 Identities=21% Similarity=0.304 Sum_probs=399.9
Q ss_pred CCcccchHHHHHHhh---chhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHH
Q 041942 2 RTNRHRSSRLWKKCT---NLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIR 78 (498)
Q Consensus 2 ~~~~~~~~~~l~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 78 (498)
.|+..+|..++.+|. +.+.+.+++..|.+.|+.||+.+++.++. .|++ .|+++.|.++|+.|+.||..+||.+|.
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~-~y~k-~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL-MHVK-CGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH-HHhc-CCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 478889999999886 55678999999999999999999999999 9999 999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhH
Q 041942 79 GSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNT 158 (498)
Q Consensus 79 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 158 (498)
+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHHhhCC----C
Q 041942 159 ASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEVP----K 230 (498)
Q Consensus 159 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~ 230 (498)
|.++|++|.++|..+|+.++.+|++.|++++|.++|++|. .||..||+.++.+|++.|++++|.+++..|. .
T Consensus 278 A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~ 357 (697)
T PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357 (697)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999996 7899999999999999999999999888886 3
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHH
Q 041942 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310 (498)
Q Consensus 231 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 310 (498)
+|..+|+.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++| +.|...|+.||..+|+.+
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf-~~M~~~g~~Pd~~T~~~l 432 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMF-ERMIAEGVAPNHVTFLAV 432 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHH-HHHHHhCCCCCHHHHHHH
Confidence 688889999999999999999999999886 578889999999999999999999999 666778889999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC
Q 041942 311 IDMYAKCGSIERAIEVFLGMRD-----RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385 (498)
Q Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 385 (498)
+.+|++.|.+++|.++|+.|.+ |+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKN 509 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999988863 78888999999999999999998888765 478888899999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCC--CCCchHHHHH-------HH---H-H
Q 041942 386 VEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRK--DESGDYVLLS-------NI---Y-A 444 (498)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~-------~~---~-~ 444 (498)
++.|..+++++.+ +.|+ ...|.+.|++++|.++++.+.+..- .....|..+. .. . .
T Consensus 510 ~~~a~~~~~~l~~---~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~ 586 (697)
T PLN03081 510 LELGRLAAEKLYG---MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQ 586 (697)
T ss_pred cHHHHHHHHHHhC---CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCcc
Confidence 9999998888854 5565 4456688999999999998886542 1111121110 00 0 0
Q ss_pred hCCCchHHHHHHHHhhhCCCccCCceeEEEe
Q 041942 445 SRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475 (498)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 475 (498)
...-++...++.++|++.|+.|+......++
T Consensus 587 ~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~ 617 (697)
T PLN03081 587 SREIYQKLDELMKEISEYGYVAEENELLPDV 617 (697)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcchhhccc
Confidence 0112345678889999999998776655444
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-29 Score=264.12 Aligned_cols=434 Identities=11% Similarity=0.024 Sum_probs=255.8
Q ss_pred hchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHH
Q 041942 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFL 92 (498)
Q Consensus 16 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~ 92 (498)
|+.+.|..++..+... .++++.++..+.. .+.. .|++++|.+.|+.+. +.+...+..+...+...|++++|.+.
T Consensus 445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~-~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK-QPDNASLHNLLGA-IYLG-KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCcHHHHHHHH-HHHh-CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444444444444332 2233444444444 5555 566666666665543 23344455555555566666666666
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---C
Q 041942 93 YTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---M 169 (498)
Q Consensus 93 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 169 (498)
|+++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..|...|++++|..+++.+.. .
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 66655432 3344555555555556666666666666665543 33445555566666666666666666655432 3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHH
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGY 243 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 243 (498)
+...|..+..++.+.|++++|...|+++. +.+...+..+..++.+.|++++|...|+++.+ .+..++..++..+
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 44456666666666666666666666654 33445566666666666666666666665543 2345666666666
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHH
Q 041942 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (498)
...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...|+..+... |+..++..+..++.+.|++++|
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA---PSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHCCCHHHH
Confidence 66666666666666666554 3455556666666666677777766664444332 2224445566666667777777
Q ss_pred HHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc
Q 041942 324 IEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400 (498)
Q Consensus 324 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 400 (498)
.+.++.+.+ .+...+..+...|...|++++|.++|+++.+.. +++...+..+...+...|+ .+|...++++....
T Consensus 756 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 756 VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 666665542 345566666667777777777777777776643 3345666666667777776 66777777665521
Q ss_pred CCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 401 NIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 401 ~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
+-.|. ...|...|++++|...++++++.+|.++.++..++.+|...|++++|.+++++|+
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 11221 2233366777777777777777777777777777777777777777777777764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=254.79 Aligned_cols=408 Identities=12% Similarity=0.065 Sum_probs=292.0
Q ss_pred hhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhh
Q 041942 47 GSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 123 (498)
.+.+ .|++++|.++++.+. +++..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++
T Consensus 440 ~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 440 SYLR-SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHh-cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 4445 556666666655554 3345566666667777777777777777766542 3344455566666666777777
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC--
Q 041942 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP-- 198 (498)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 198 (498)
|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...|+++.. .+...+..++..+.+.|++++|..+++.+.
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 777777776654 34566667777777777777777777765432 344456667777777777777777777766
Q ss_pred -CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041942 199 -VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274 (498)
Q Consensus 199 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 274 (498)
+.+...|..+..++...|++++|...|+.+.+ .+...+..+...+...|++++|..+++++.+.. +.+..++..+
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 44556777777778888888888887777653 345567777777778888888888888777653 3456677777
Q ss_pred HHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHH
Q 041942 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAE 352 (498)
Q Consensus 275 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 352 (498)
...+...|++++|..+++.+.... +.+...+..+...+...|++++|...|+.+.. |+..++..++.++...|+++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHH
Confidence 777888888888888884443332 34555666777888888888888888887653 55567777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHH
Q 041942 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKR 424 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~ 424 (498)
+|.+.++++.+.. +.+...+..+...|...|++++|.++++++.+ ..|+ ...|...|+ .+|...+++
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK---KAPDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 8888888888743 34577778888888888999999999988877 2343 233347777 779999999
Q ss_pred HHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 425 LLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
+++..|+++..+..++.++...|++++|++.++++.+.+..
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999887653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-21 Score=205.39 Aligned_cols=443 Identities=11% Similarity=-0.003 Sum_probs=274.3
Q ss_pred HHHHhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChH
Q 041942 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPL 87 (498)
Q Consensus 11 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~ 87 (498)
++..-|+.+.|.+.+..+.+.. +|+.............. .|+.++|.+.|+.+. +.+...+..+...+...|+.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~-~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKL-PAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhC-CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence 5556678888888888887653 23322222222213334 688999999998887 334557778888888899999
Q ss_pred HHHHHHHHHHhCCC------------------C--------------CCHhhH---------------------HHHHHH
Q 041942 88 DAVFLYTQMEKCSI------------------K--------------PNKFTF---------------------SFVLKA 114 (498)
Q Consensus 88 ~A~~~~~~m~~~~~------------------~--------------p~~~~~---------------------~~li~~ 114 (498)
+|++.|+++.+... . |+...+ ......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99999888754310 0 110000 011233
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC--CCc---chHH------------HH
Q 041942 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK--MDV---VAWS------------SL 177 (498)
Q Consensus 115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~l 177 (498)
+...|++++|...|++.++.. +.+..++..+..+|.+.|++++|...|++..+ |+. ..|. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 456788899999999988864 34677888899999999999999999886554 221 1121 12
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHH-------------
Q 041942 178 TAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK--R-DVVSWNA------------- 238 (498)
Q Consensus 178 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~------------- 238 (498)
...+.+.|++++|+..|+++. +.+...+..+..++...|++++|++.|+++.+ | +...+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence 345678889999999998887 44556777788888889999999998888764 2 2222222
Q ss_pred -----------------------------HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHH
Q 041942 239 -----------------------------MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK 289 (498)
Q Consensus 239 -----------------------------l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 289 (498)
+...+...|++++|+..|++.++.. +-+...+..+...+...|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 2334456788888888888888764 2355667778888888999999999
Q ss_pred HHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-------------------------------------
Q 041942 290 VHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD------------------------------------- 332 (498)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------------------- 332 (498)
.+++.+...+..+ ..+..+...+...++.++|...++.+..
T Consensus 517 ~l~~al~~~P~~~--~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 517 LMRRLAQQKPNDP--EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHcCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 8866665443322 2222233333444555555555444431
Q ss_pred ------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 333 ------RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 333 ------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
.+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|.+.++.+.+..+-.++
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH
Confidence 23334445555566666666666666666652 33 3455555666666666666666666655441111111
Q ss_pred -----hhHHHhhCChHHHHHHHHHHHccCCCCC------chHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 406 -----IRHYGVHGDVELGRLANKRLLNMRKDES------GDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 406 -----~~~y~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
...|...|++++|.+.++++++..|+++ .++..++..+...|++++|+..|++...
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2233356666666666666665554433 2444456666666666666666666643
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-20 Score=198.66 Aligned_cols=371 Identities=12% Similarity=0.046 Sum_probs=241.1
Q ss_pred hhhccCCChHHHHHhcccCC--CC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCC-CHhhHH------------H
Q 041942 47 GSVVIPGAINYAHKMFVKIT--EP-DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP-NKFTFS------------F 110 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~------------~ 110 (498)
.+.. .|++++|...|+... .| +...+..+...+.+.|++++|+..|++..+..... ....|. .
T Consensus 278 ~~~~-~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVD-SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 4455 788888888887775 33 56677778888888888888888888877643111 111111 1
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCCh
Q 041942 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGEL 187 (498)
Q Consensus 111 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 187 (498)
....+.+.|++++|...++++.+.. +.+...+..+..++...|++++|.+.|++..+ .+...+..+...+. .++.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 1234556788888888888888764 34556677777888888888888888876553 23334444444442 3445
Q ss_pred HHHHHHHhcCCCCC------------cchHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChHHH
Q 041942 188 SMARSLFDEMPVRD------------LVSWNVMITGYAKQGEMEKANELFNEVPK--R-DVVSWNAMISGYVLCGMNKQA 252 (498)
Q Consensus 188 ~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a 252 (498)
++|+.+++.+.... ...+..+...+...|++++|.+.|++..+ | +...+..+...|.+.|++++|
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 55655555543110 11233344455555666666666555542 2 333444555555566666666
Q ss_pred HHHHHHHHhCCCCCCHHHHH--------------------------------------------HHHHHHhccCCchHHH
Q 041942 253 LEMFEEMRSVGERPDDVTML--------------------------------------------SLLTACADLGDLEVGK 288 (498)
Q Consensus 253 ~~~~~~m~~~g~~p~~~~~~--------------------------------------------~li~~~~~~~~~~~a~ 288 (498)
...++++.+.. +.+...+. .....+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 66665555432 11121111 2233455566666666
Q ss_pred HHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 041942 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365 (498)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 365 (498)
.+++ ..+.+...+..+...+.+.|++++|+..|+++.+ | +...+..++..|...|++++|++.++...+
T Consensus 594 ~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~-- 665 (1157)
T PRK11447 594 ALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA-- 665 (1157)
T ss_pred HHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--
Confidence 6652 1234555667788999999999999999998774 3 678899999999999999999999998887
Q ss_pred CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----------hhHHHhhCChHHHHHHHHHHHccC
Q 041942 366 VRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----------IRHYGVHGDVELGRLANKRLLNMR 429 (498)
Q Consensus 366 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----------~~~y~~~g~~~~a~~~~~~~~~~~ 429 (498)
..|+ ..+...+..++...|++++|.++++.+....+-.|. ...|...|+.++|...|++++...
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 4454 556677788899999999999999999873322232 223458899999999999997644
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=178.15 Aligned_cols=367 Identities=17% Similarity=0.209 Sum_probs=307.7
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChH-HHHHHH
Q 041942 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP-NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRF-VRNSLI 147 (498)
Q Consensus 70 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 147 (498)
..+|..+.+.+-..|++.+|+..++.+.+. +| ....|..+..++...|+.+.|.+.|.+.++. .|+.. ....+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 457888999999999999999999999885 45 5678999999999999999999999999885 45443 444566
Q ss_pred HHHHhcCChhHHHHhhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHH
Q 041942 148 YFHANCGDLNTASVLFDGDAK--M-DVVAWSSLTAGYARRGELSMARSLFDEMPVRD---LVSWNVMITGYAKQGEMEKA 221 (498)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A 221 (498)
..+...|++++|..-|.+..+ | -...|+.|...+...|+...|+.-|++..+.| ...|-.|...|...+.++.|
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 667778999999888876443 3 34679999999999999999999999988433 35888899999999999999
Q ss_pred HHHHhhCCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCchHHHHHHHHHHHh
Q 041942 222 NELFNEVPK--R-DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD-DVTMLSLLTACADLGDLEVGKKVHCTLLDM 297 (498)
Q Consensus 222 ~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 297 (498)
...+.+... | ..+.|..+...|-..|..+.|+..|++.++. .|+ ...|+.+..++-..|++.+|.+.|.+.+.-
T Consensus 272 vs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999887653 4 4567888888899999999999999999876 444 568999999999999999999999777766
Q ss_pred hcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 041942 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITF 373 (498)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~ 373 (498)
.... ....+.|...|...|.+++|..+|....+ | -...++.|...|-++|++++|+..|++.++ ++|+ ...|
T Consensus 350 ~p~h--adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~ 425 (966)
T KOG4626|consen 350 CPNH--ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADAL 425 (966)
T ss_pred CCcc--HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHH
Confidence 5433 44557899999999999999999987765 3 345789999999999999999999999998 8898 6789
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 041942 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445 (498)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (498)
+.+...|-..|+.+.|.+.+.+.+. ++|. ...|...|++.+|...|+.++.+.|+.+.+|..+..++--
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 9999999999999999999999877 7887 4556689999999999999999999999999888877655
Q ss_pred CCCc
Q 041942 446 RGEW 449 (498)
Q Consensus 446 ~g~~ 449 (498)
-.+|
T Consensus 503 vcdw 506 (966)
T KOG4626|consen 503 VCDW 506 (966)
T ss_pred Hhcc
Confidence 4444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=175.84 Aligned_cols=403 Identities=15% Similarity=0.094 Sum_probs=327.2
Q ss_pred CCChHHHHHhcccCCC--CC-hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHH
Q 041942 52 PGAINYAHKMFVKITE--PD-TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~~--~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 128 (498)
.|++++|++--.-.-+ |+ ....-.+-..+.+..+.+....--....+. .+--.++|..+...+-..|+++.|..++
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~y 139 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALALY 139 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 5777777775544332 21 112222334456666666655443333332 2445679999999999999999999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcch---HHHHHHHHHhcCChHHHHHHHhcCC--CCC-c
Q 041942 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA---WSSLTAGYARRGELSMARSLFDEMP--VRD-L 202 (498)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~ 202 (498)
+.+++.. +-....|..+..++...|+.+.|...|....+-++.. .+.+...+-..|+.++|...+-+.. .|. .
T Consensus 140 ~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fA 218 (966)
T KOG4626|consen 140 RAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFA 218 (966)
T ss_pred HHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCcee
Confidence 9999864 3357789999999999999999999998776644433 2335555667899999998888776 444 4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 041942 203 VSWNVMITGYAKQGEMEKANELFNEVPKRD---VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP-DDVTMLSLLTAC 278 (498)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 278 (498)
+.|+.|...+-..|++..|..-|++..+-| ...|-.|...|...+.+++|...|.+.... .| ....+..+...|
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iY 296 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIY 296 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEE
Confidence 789999999999999999999999998643 357888999999999999999999887755 45 456788888889
Q ss_pred hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHH
Q 041942 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESI 355 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~ 355 (498)
...|.++.|++.|++.+...+.-| ..|+.|..++-..|++.+|++.+.+... | ...+.+.|...|...|.++.|.
T Consensus 297 yeqG~ldlAI~~Ykral~~~P~F~--~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQPNFP--DAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred eccccHHHHHHHHHHHHhcCCCch--HHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHH
Confidence 999999999999977776664444 4578899999999999999999988764 3 4678899999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHH
Q 041942 356 AMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLL 426 (498)
Q Consensus 356 ~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~ 426 (498)
.+|....+ +.|. ....+.|...|-++|++++|...+++.++ +.|+ ..+|...|+...|.+.+.+++
T Consensus 375 ~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 375 RLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 99999998 7777 67889999999999999999999999977 8888 456668999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
..+|.-..+.+.|+.+|-.+|+..+|+.-|++..+....
T Consensus 450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999876543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-19 Score=182.27 Aligned_cols=380 Identities=11% Similarity=0.016 Sum_probs=282.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHh
Q 041942 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHAN 152 (498)
Q Consensus 73 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (498)
+......+.+.|+++.|+..|++... +.|+...|..+..++.+.|+++.|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44566678888999999999998876 46777888888888888999999999999988864 3456688888889999
Q ss_pred cCChhHHHHhhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHhcCC-------------------------------
Q 041942 153 CGDLNTASVLFDGDAKM---DVVAWSSLTAGYARRGELSMARSLFDEMP------------------------------- 198 (498)
Q Consensus 153 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------------------- 198 (498)
.|++++|..-|...... +......++..+........+...++.-.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 99999988766543221 11111111111111111111111111110
Q ss_pred CCC-cchHHHHHHHH---HhcCChHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 041942 199 VRD-LVSWNVMITGY---AKQGEMEKANELFNEVPKR------DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268 (498)
Q Consensus 199 ~~~-~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 268 (498)
.+. ...+..+...+ ...+++++|.+.|+...+. ....|+.+...+...|++++|+..|++..+.. +-..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 000 01111111111 2236788999999887642 34578888889999999999999999998763 2235
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHH
Q 041942 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGL 345 (498)
Q Consensus 269 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 345 (498)
..|..+...+...|++++|...|++.+... +.+...+..+...+...|++++|...|++..+ | +...+..+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 678888888999999999999997776654 34567778899999999999999999998764 3 567788899999
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCCh---------------hHH
Q 041942 346 AFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI---------------RHY 409 (498)
Q Consensus 346 ~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---------------~~y 409 (498)
.+.|++++|+..+++.++. .| +...+..+...+...|++++|.+.+++..+ +.|+. ..|
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHH
Confidence 9999999999999999884 45 477888899999999999999999999887 33331 112
Q ss_pred HhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 410 GVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
...|++++|...++++++++|++..++..++.++...|++++|++.|++..+..
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 246999999999999999999999999999999999999999999999987643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-18 Score=178.70 Aligned_cols=208 Identities=12% Similarity=0.040 Sum_probs=147.9
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHH
Q 041942 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326 (498)
Q Consensus 247 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (498)
++.++|...+.+.... .|+......+...+...|++++|...|++.... +|+...+..+...+.+.|+.++|...
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 4555666655555544 344443333344445777777777777443322 22223344556667778888888888
Q ss_pred HhcCCCCChh---HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCC
Q 041942 327 FLGMRDRDVS---TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIE 403 (498)
Q Consensus 327 ~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 403 (498)
++...+.++. .+..+.......|++++|...+++..+ ..|+...+..+...+.+.|++++|...+++... ..
T Consensus 565 l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~ 639 (987)
T PRK09782 565 LQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LE 639 (987)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hC
Confidence 8766643322 222333334455899999999998888 567778888888889999999999999999877 56
Q ss_pred CC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 404 PN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 404 p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
|+ ...+...|++++|...++++++.+|+++.++..++.++...|++++|+..+++..+...
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 76 22344888999999999999999999999999999999999999999999999976553
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=179.05 Aligned_cols=287 Identities=15% Similarity=0.115 Sum_probs=147.6
Q ss_pred HHHhcCChhHHHHhhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHhcCC-CCC------cchHHHHHHHHHhcCCh
Q 041942 149 FHANCGDLNTASVLFDGDAKM---DVVAWSSLTAGYARRGELSMARSLFDEMP-VRD------LVSWNVMITGYAKQGEM 218 (498)
Q Consensus 149 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~------~~~~~~l~~~~~~~~~~ 218 (498)
.+...|++++|...|+++... +..++..+...+.+.|++++|..+++.+. .++ ...+..+...|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555666666666554432 22344455555555555555555555544 111 12334444444445555
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 041942 219 EKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295 (498)
Q Consensus 219 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 295 (498)
++|..+|+++.+ .+..++..++..+...|++++|...++.+.+.+..+....
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------- 178 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------- 178 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-------------------------
Confidence 555555444432 2333444444444444555555544444443322111100
Q ss_pred HhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 041942 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372 (498)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 372 (498)
....+..+...+.+.|++++|...|+++.+ | +...+..+...+...|++++|.++++++.+.+......+
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 011223344444555555555555554432 1 233445555555555666666666655554321111234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 041942 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445 (498)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (498)
+..+..+|.+.|++++|...++++.+ ..|+ ...|.+.|++++|...++++++..|++. .+..+...+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~ 327 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhh
Confidence 45555555556666666666655554 2333 2223355666666666666666667665 45555555543
Q ss_pred ---CCCchHHHHHHHHhhhCCCccCCcee
Q 041942 446 ---RGEWNRVEKVRKLMDDSDIKKQPGCS 471 (498)
Q Consensus 446 ---~g~~~~A~~~~~~m~~~~~~~~~~~~ 471 (498)
.|+.++|+.++++|.++++.|+|.+.
T Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred ccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 56999999999999999999888864
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-20 Score=175.06 Aligned_cols=295 Identities=13% Similarity=0.037 Sum_probs=147.4
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCC---hHHHHHHHHHHHhcCCh
Q 041942 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN---RFVRNSLIYFHANCGDL 156 (498)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 156 (498)
+...|++++|+..|+++.+.+ +.+..++..+...+.+.|+++.|..+++.+.+.+..++ ..++..+...|...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345566666666666666542 22344555666666666666666666666655321111 13345555555555555
Q ss_pred hHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 041942 157 NTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMPV--RDLVSWNVMITGYAKQGEMEKANELFNEVPKR 231 (498)
Q Consensus 157 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 231 (498)
++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+.. |+.... .
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------------------------~ 178 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-------------------------E 178 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-------------------------H
Confidence 555555554433 2333444555555555555555555554431 110000 0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHH
Q 041942 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311 (498)
Q Consensus 232 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 311 (498)
....+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|..++++..... .......+..++
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~l~ 256 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQD-PEYLSEVLPKLM 256 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-hhhHHHHHHHHH
Confidence 00122333444444555555555555544332 1223344444445555555555555553333221 111123344555
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh---cCCH
Q 041942 312 DMYAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH---AGKV 386 (498)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~ 386 (498)
.+|...|++++|...++++.+ |+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.
T Consensus 257 ~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~ 334 (389)
T PRK11788 257 ECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRA 334 (389)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccc
Confidence 555555566665555555442 4444455566666666666666666666665 34666666665555443 3466
Q ss_pred HHHHHHHHHhHHhcCCCCC
Q 041942 387 EEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~ 405 (498)
+++..+++++.+ .++.|+
T Consensus 335 ~~a~~~~~~~~~-~~~~~~ 352 (389)
T PRK11788 335 KESLLLLRDLVG-EQLKRK 352 (389)
T ss_pred hhHHHHHHHHHH-HHHhCC
Confidence 666666666665 444444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-18 Score=175.42 Aligned_cols=386 Identities=8% Similarity=-0.061 Sum_probs=189.8
Q ss_pred hhhccCCChHHHHHhcccCCC---CChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhh
Q 041942 47 GSVVIPGAINYAHKMFVKITE---PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 123 (498)
+... .|+.++|++++....+ .+...+..+...+...|++++|.++|++..+.. +.+...+..+...+...|+.++
T Consensus 24 ia~~-~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 24 IALW-AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 4444 5666666666665542 223345556666666666666666666655531 2334445555555566666666
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCCC-
Q 041942 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMPV- 199 (498)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 199 (498)
|...++++.+.. +.+.. +..+..++...|+.++|...+++..+ .+...+..+...+...+..+.|+..++....
T Consensus 102 A~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~ 179 (765)
T PRK10049 102 ALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLT 179 (765)
T ss_pred HHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC
Confidence 666666666542 22333 55555566666666666666655433 1223334444455555555555555554442
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHH-----hCCCh---HHHHHHHHHHHhC-CCCCCHH-
Q 041942 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV-----LCGMN---KQALEMFEEMRSV-GERPDDV- 269 (498)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~---~~a~~~~~~m~~~-g~~p~~~- 269 (498)
|+. ...+ . ......++.... ..+++ ++|+..++.+.+. ...|+..
T Consensus 180 p~~--~~~l-~----------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 180 PAE--KRDL-E----------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHH--HHHH-H----------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 110 0000 0 000011111111 11122 4455555555432 1122111
Q ss_pred HHH----HHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------hhHH
Q 041942 270 TML----SLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRD-------VSTW 338 (498)
Q Consensus 270 ~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~ 338 (498)
.+. ..+..+...|++++|+..|+.+.......|+.. ...+...|...|++++|...|+++.+.+ ....
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~ 313 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEEL 313 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHH
Confidence 110 012233344555666665544333221112211 1113445555666666666655543211 1223
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCC
Q 041942 339 STLIGGLAFHGFAEESIAMFREMQRLK-----------VRPT---EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404 (498)
Q Consensus 339 ~~l~~~~~~~~~~~~A~~~~~~m~~~~-----------~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 404 (498)
..+..++...|++++|..+++++.... -.|+ ...+..+...+...|++++|+++++++....+-.+
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~ 393 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ 393 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 344445556666666666666655531 0112 12333444556666666666666666655211111
Q ss_pred C-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 405 N-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 405 ~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
. ...+...|++++|+..++++++++|+++..+..++..+...|++++|+.+++++.+.
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 1 333446666777777777777777777777777777777777777777777777654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-17 Score=170.73 Aligned_cols=389 Identities=8% Similarity=-0.036 Sum_probs=230.4
Q ss_pred HHHHHHhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCC
Q 041942 9 SRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQN 85 (498)
Q Consensus 9 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~ 85 (498)
..+..-.|+...|.+++....... +.+...+..+.. .+.. .|++++|.++|+... +.+...+..+...+...|+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~-~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAV-AYRN-LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH-HHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 345556678888888888877632 333334566665 7788 999999999999964 4556778888889999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhcc
Q 041942 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165 (498)
Q Consensus 86 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 165 (498)
+++|+..+++..+.. +.+.. +..+..++...|+.+.|...++++.+.. +.+...+..+..++...|..+.|.+.++.
T Consensus 99 ~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 999999999998763 44555 8888888899999999999999999975 34566777788889999999999999987
Q ss_pred CCCCCcch--------HHHHHHHHHh-----cCCh---HHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHh
Q 041942 166 DAKMDVVA--------WSSLTAGYAR-----RGEL---SMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFN 226 (498)
Q Consensus 166 ~~~~~~~~--------~~~l~~~~~~-----~~~~---~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 226 (498)
... ++.. ...++..... .+++ ++|+..++.+. +.++.......
T Consensus 176 ~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~----------------- 237 (765)
T PRK10049 176 ANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ----------------- 237 (765)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH-----------------
Confidence 765 2211 1111111111 1112 33444444333 11111000000
Q ss_pred hCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc--c
Q 041942 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA--K 303 (498)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 303 (498)
......+..+...|++++|...|+.+.+.+.+ |+. ....+...+...|++++|...|++.+......+ .
T Consensus 238 -------~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 238 -------RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred -------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 00000112223445555555555555544321 211 111123445555555555555533332221110 0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCCC---------------C---hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDR---------------D---VSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 365 (498)
......+..++...|++++|..+++.+.+. + ...+..+...+...|+.++|++.++++...
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~- 388 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN- 388 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 122233344445555555555555544321 1 123445556666777777777777777663
Q ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCc
Q 041942 366 VRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 366 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
.| +...+..+...+...|++++|++.++++.+ +.|+ ...+...|++++|+..++++++..|+++.
T Consensus 389 -~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~---l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 389 -APGNQGLRIDYASVLQARGWPRAAENELKKAEV---LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 34 355666666677777777777777777766 4455 22333667777777777777777777763
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-17 Score=167.58 Aligned_cols=377 Identities=14% Similarity=0.013 Sum_probs=268.1
Q ss_pred hhhccCCChHHHHHhcccCC--CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhH
Q 041942 47 GSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 124 (498)
.+-+ .|++++|.+.|+... .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++|
T Consensus 136 ~~~~-~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 136 KAYR-NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred HHHH-cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 4555 799999999999876 7788888889999999999999999999998753 33566888888889999999999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCC-----------------------------CCCc---c
Q 041942 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA-----------------------------KMDV---V 172 (498)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------------------------~~~~---~ 172 (498)
...+......+...+.. ...++..+........+...++.-. +.+. .
T Consensus 214 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 214 LLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 88777665443211111 1111111111111111222211110 0000 1
Q ss_pred hHHHHHHHH---HhcCChHHHHHHHhcCCC-----C-CcchHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHH
Q 041942 173 AWSSLTAGY---ARRGELSMARSLFDEMPV-----R-DLVSWNVMITGYAKQGEMEKANELFNEVPK--R-DVVSWNAMI 240 (498)
Q Consensus 173 ~~~~l~~~~---~~~~~~~~A~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~ 240 (498)
.+..+...+ ...+++++|...|++... | ....|..+...+...|++++|...|++..+ | +...|..+.
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la 372 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRA 372 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 111111111 224678899999987762 2 345678888888999999999999998864 3 345788888
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCH
Q 041942 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320 (498)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (498)
..+...|++++|...|++..+.. +.+..++..+...+...|++++|...|++.+...+ .+...+..+...+.+.|++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P--~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP--DFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc--cCHHHHHHHHHHHHHCCCH
Confidence 88999999999999999988764 34577888888999999999999999976665442 3456667788889999999
Q ss_pred HHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HH------HHHHHHHHHhhcCCHHHH
Q 041942 321 ERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT--EI------TFVGVLVACSHAGKVEEG 389 (498)
Q Consensus 321 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~------~~~~l~~~~~~~g~~~~a 389 (498)
++|+..|++..+ .+...|+.+...+...|++++|++.|++.... .|+ .. .++.....+...|++++|
T Consensus 450 ~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 450 ASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 999999987753 35778899999999999999999999998874 332 11 122222334456999999
Q ss_pred HHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCc
Q 041942 390 KKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 390 ~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
.+++++... +.|+ ...|...|++++|...|+++.++.+....
T Consensus 528 ~~~~~kAl~---l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 528 ENLCEKALI---IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHh---cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 999999877 4555 33444899999999999999988776444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-18 Score=171.94 Aligned_cols=339 Identities=8% Similarity=0.001 Sum_probs=260.7
Q ss_pred hhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHH
Q 041942 106 FTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYA 182 (498)
Q Consensus 106 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 182 (498)
.-...++..+.+.|+++.|..+++..+..... +...+..++.+....|++++|...|+++.. .+...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34556677788999999999999999987533 455566666777789999999999997654 35567888888999
Q ss_pred hcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChHHHHHHH
Q 041942 183 RRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK--R-DVVSWNAMISGYVLCGMNKQALEMF 256 (498)
Q Consensus 183 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~ 256 (498)
+.|++++|...++++. +.+...+..+..++...|+.++|...++.+.. | +...+..+ ..+...|++++|...+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 9999999999999887 44566888889999999999999999987642 3 33334333 3478889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHH----HHHHHhcCCC
Q 041942 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER----AIEVFLGMRD 332 (498)
Q Consensus 257 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~ 332 (498)
+.+.+....++...+..+..++...|++++|...+++.+... +.+...+..+...+...|++++ |...|++..+
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 998876534445555566778889999999999997666544 3456666778899999999886 7888887763
Q ss_pred --C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC---
Q 041942 333 --R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--- 405 (498)
Q Consensus 333 --~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--- 405 (498)
| +...+..+...+...|++++|+..+++..+ ..|+ ...+..+..++.+.|++++|...++.+....+-.+.
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 3 567888999999999999999999999988 4465 566777788899999999999999998873222222
Q ss_pred --hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 406 --IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 406 --~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
...+...|+.++|...|+++++..|++. ...+++|...|.+..+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHh
Confidence 2234588999999999999999988874 23445666666666554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-16 Score=161.00 Aligned_cols=432 Identities=11% Similarity=0.039 Sum_probs=259.5
Q ss_pred hchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC--CCChhhHHHHHHHHhccCChHHHHHHH
Q 041942 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGSAQSQNPLDAVFLY 93 (498)
Q Consensus 16 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~ 93 (498)
|+...|...++...+....- ..++..+.. +|.. .|++++|+..+++.. .|+-..|..++..+ ++.++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~-~yl~-~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN-IPLTLYLAE-AYRH-FGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHH-HHHH-CCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 56666666666666653222 444444444 7777 777777777777765 34333333333222 6666666666
Q ss_pred HHHHhCC--------------------------------------CCCCHhhHHHH-HHHhhcccchhhHHHHHHHHHHh
Q 041942 94 TQMEKCS--------------------------------------IKPNKFTFSFV-LKACTRLLYRNMGFCVHGKIVKY 134 (498)
Q Consensus 94 ~~m~~~~--------------------------------------~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~ 134 (498)
+++.... ..|+..+.... .+.|.+.++++.+..++.++.+.
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 6665532 11122222222 45555667777777777777776
Q ss_pred CCCCChHHHHHHHHHHHh-cCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC-----CCCcchHHH-
Q 041942 135 GFEFNRFVRNSLIYFHAN-CGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP-----VRDLVSWNV- 207 (498)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~- 207 (498)
+ +.+......|..+|.. .++ +++..+++...+.+...+..+...+.+.|+.++|.++++++. .|+..+|.-
T Consensus 212 ~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~ 289 (987)
T PRK09782 212 N-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL 289 (987)
T ss_pred C-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH
Confidence 5 3344445556666666 355 666666655444567777788888888899999988888887 122222211
Q ss_pred -----------------------------HHHHHHhcCChHHHHHHHhhCCC----------------------------
Q 041942 208 -----------------------------MITGYAKQGEMEKANELFNEVPK---------------------------- 230 (498)
Q Consensus 208 -----------------------------l~~~~~~~~~~~~A~~~~~~~~~---------------------------- 230 (498)
++..+.+.++++.++++...-..
T Consensus 290 l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y 369 (987)
T PRK09782 290 LSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLY 369 (987)
T ss_pred HHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHH
Confidence 13334444444444443221110
Q ss_pred ---C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhC--------------------------------------------
Q 041942 231 ---R-DVVSWNAMISGYVLCGMNKQALEMFEEMRSV-------------------------------------------- 262 (498)
Q Consensus 231 ---~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------------------------------------------- 262 (498)
| +......+.....+.|+.++|..+|+.....
T Consensus 370 ~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 449 (987)
T PRK09782 370 QQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ 449 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence 0 1111111111222334444444444433320
Q ss_pred -------------------CC-CC--CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCH
Q 041942 263 -------------------GE-RP--DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320 (498)
Q Consensus 263 -------------------g~-~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (498)
+. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---CchHHHHHHHHHHHHCCCH
Confidence 01 11 23334444444433 55666666554444433 3322223344445678899
Q ss_pred HHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 321 ERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 321 ~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
++|...|+++.. ++...+..+...+.+.|++++|...+++..+.+ |+ ...+..+...+.+.|++++|...+++..
T Consensus 526 eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 526 ATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999988887653 344556677778888999999999999988743 44 3333334445556699999999999987
Q ss_pred HhcCCCCChhHH-------HhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 398 DEYNIEPNIRHY-------GVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 398 ~~~~~~p~~~~y-------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+ ..|+...| .+.|++++|...++++++++|+++.++..++.++...|++++|+..+++..+...
T Consensus 604 ~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 604 N---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred H---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 7 56663333 3889999999999999999999999999999999999999999999999987543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-18 Score=169.49 Aligned_cols=366 Identities=11% Similarity=-0.032 Sum_probs=285.4
Q ss_pred CCChHHHHHhcccCC------CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHH
Q 041942 52 PGAINYAHKMFVKIT------EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 125 (498)
..+++...-.|...+ ..+..-...++..+.+.|++++|+.+++...... +-+...+..++.++...|+++.|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 18 QEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHH
Confidence 566666666666554 1223334556777889999999999999998864 334455666667777899999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC--CC
Q 041942 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP--VR 200 (498)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~ 200 (498)
..++++.+.. +.+...+..+...+...|++++|...|++... .+...+..+...+...|++++|...++.+. .|
T Consensus 97 ~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 97 QVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 9999999875 44677888999999999999999999987654 356678889999999999999999998775 33
Q ss_pred C-cchHHHHHHHHHhcCChHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041942 201 D-LVSWNVMITGYAKQGEMEKANELFNEVPKR----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275 (498)
Q Consensus 201 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 275 (498)
+ ...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..+++..+.. +.+...+..+.
T Consensus 176 ~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg 253 (656)
T PRK15174 176 PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLG 253 (656)
T ss_pred CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 3 3344333 3578899999999999987653 23344556778889999999999999999775 44677788889
Q ss_pred HHHhccCCchH----HHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhC
Q 041942 276 TACADLGDLEV----GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFH 348 (498)
Q Consensus 276 ~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~ 348 (498)
..+...|++++ |...+++.+... +.+...+..+...+.+.|++++|...+++..+ | +...+..+..++...
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 99999999986 788886666554 34567788899999999999999999988764 3 566788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHc
Q 041942 349 GFAEESIAMFREMQRLKVRPTEIT-FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLN 427 (498)
Q Consensus 349 ~~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~ 427 (498)
|++++|+..++++... .|+... +..+..++...|+.++|...+++..+ ..|+.. ...+++|...+.++++
T Consensus 332 G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~---~~P~~~----~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 332 GQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ---ARASHL----PQSFEEGLLALDGQIS 402 (656)
T ss_pred CCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hChhhc----hhhHHHHHHHHHHHHH
Confidence 9999999999999984 566433 44456788999999999999999987 455532 3556788888888886
Q ss_pred cCCCC
Q 041942 428 MRKDE 432 (498)
Q Consensus 428 ~~~~~ 432 (498)
.-+..
T Consensus 403 ~~~~~ 407 (656)
T PRK15174 403 AVNLP 407 (656)
T ss_pred hcCCc
Confidence 55443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-16 Score=161.00 Aligned_cols=419 Identities=11% Similarity=0.010 Sum_probs=299.0
Q ss_pred HHHHHHHHhhhhccCCChHHHHHhcccCC--CCCh--hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 041942 38 SALRELIYSGSVVIPGAINYAHKMFVKIT--EPDT--FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLK 113 (498)
Q Consensus 38 ~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 113 (498)
..|...| ...+ .|+++.|+..|++.. .|+. ..+ .++..+...|+.++|+..+++.... -+........+..
T Consensus 36 ~~y~~ai--i~~r-~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ 110 (822)
T PRK14574 36 TQYDSLI--IRAR-AGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAAR 110 (822)
T ss_pred HHHHHHH--HHHh-CCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHH
Confidence 3344445 3456 899999999999987 4443 234 8888888899999999999998721 1122222333355
Q ss_pred HhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHh--cCChHHHH
Q 041942 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYAR--RGELSMAR 191 (498)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~ 191 (498)
.+...|+++.|.++++++.+.. +-++..+..++..+...++.++|++.+++..+.++.....++.++.. .++..+|+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHH
Confidence 6778899999999999999875 33567777888999999999999999998887555443334444444 55665699
Q ss_pred HHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC-ChhhHHH----HHHHHH---------hCCC---hHH
Q 041942 192 SLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPKR-DVVSWNA----MISGYV---------LCGM---NKQ 251 (498)
Q Consensus 192 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~----l~~~~~---------~~g~---~~~ 251 (498)
..++++. +.+...+..+..+..+.|-...|.++..+-..- +...+.. .+.-.+ ...+ .+.
T Consensus 190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 190 QASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 9999988 445677788889999999999999888876531 1111000 011111 1122 244
Q ss_pred HHHHHHHHHhC-CCCCCH-HH----HHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHH
Q 041942 252 ALEMFEEMRSV-GERPDD-VT----MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325 (498)
Q Consensus 252 a~~~~~~m~~~-g~~p~~-~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (498)
|+.-++.+... +-.|.. .. ..--+.++...|+..++++.| +.+...+.+....+-.++.++|...+++++|..
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y-~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEY-EAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH-HHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 55556665542 222322 22 223455678889999999999 666666655455566789999999999999999
Q ss_pred HHhcCCCC---------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHhh
Q 041942 326 VFLGMRDR---------DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV-----------RPT---EITFVGVLVACSH 382 (498)
Q Consensus 326 ~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~l~~~~~~ 382 (498)
+|+.+..+ +......|.-+|...+++++|..+++++.+.-. .|| ...+..++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 99987542 222346788899999999999999999987311 122 2234455677888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHH
Q 041942 383 AGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457 (498)
Q Consensus 383 ~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (498)
.|++.+|++.++.+....+-++. ...+...|.+.+|+..++.+..++|++..+...++.++...|++.+|..+.+
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999774333333 5566689999999999999999999999999999999999999999988887
Q ss_pred HhhhCC
Q 041942 458 LMDDSD 463 (498)
Q Consensus 458 ~m~~~~ 463 (498)
.+.+..
T Consensus 509 ~l~~~~ 514 (822)
T PRK14574 509 DVISRS 514 (822)
T ss_pred HHHhhC
Confidence 775543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-15 Score=153.75 Aligned_cols=413 Identities=8% Similarity=0.009 Sum_probs=305.8
Q ss_pred HhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHH---HHHHhccCChHHHH
Q 041942 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTI---IRGSAQSQNPLDAV 90 (498)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~~A~ 90 (498)
.-|+...|...+....+......+.++ .++. .+.. .|+.++|+..+++...|+...+..+ ...+...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~-l~~~-~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQ-IAGW-AGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHH-HHHH-cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 345667777777777766433223344 7777 7888 8999999999999987755544443 34677789999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC--
Q 041942 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK-- 168 (498)
Q Consensus 91 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 168 (498)
++|+++.+.. +-+...+..++..+...++.++|++.++.+.+. .|+...+..++..+...++..+|.+.++++.+
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999998864 345677778888889999999999999999886 45556665555555556777679999998765
Q ss_pred C-CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchH--HHHHHHHHh---------cC---ChHHHHHHHhhCCC
Q 041942 169 M-DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSW--NVMITGYAK---------QG---EMEKANELFNEVPK 230 (498)
Q Consensus 169 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~--~~l~~~~~~---------~~---~~~~A~~~~~~~~~ 230 (498)
| +...+..+..++.+.|-...|.++..+-. .+...-+ ...+.-.++ .. -.+.|..-++.+..
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 3 55567888899999999999999888765 1111101 000111111 11 23444444444432
Q ss_pred -----CCh-----hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhc-
Q 041942 231 -----RDV-----VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS- 299 (498)
Q Consensus 231 -----~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~- 299 (498)
|.. .+..-.+-++...|++.++++.|+.|...|.+....+-..+..+|...+++++|..+|.+.....+
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 221 122345677888999999999999999998776777889999999999999999999977666543
Q ss_pred ---CCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-------------C---hhHHHHHHHHHHhCCCHHHHHHHH
Q 041942 300 ---GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-------------D---VSTWSTLIGGLAFHGFAEESIAMF 358 (498)
Q Consensus 300 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-------------~---~~~~~~l~~~~~~~~~~~~A~~~~ 358 (498)
..++......|..+|...+++++|..+++.+.+ | | ...+..++..+...|+..+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 123344356789999999999999999998874 1 1 123455778889999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCC
Q 041942 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRK 430 (498)
Q Consensus 359 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~ 430 (498)
+++.... +-|......+...+...|.+.+|++.++.... +.|+ ..++...+++.+|..+.+.+++..|
T Consensus 440 e~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~---l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 440 EDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES---LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 9998842 33678888889999999999999999988766 5776 4455589999999999999999999
Q ss_pred CCCchH
Q 041942 431 DESGDY 436 (498)
Q Consensus 431 ~~~~~~ 436 (498)
+++.+-
T Consensus 516 e~~~~~ 521 (822)
T PRK14574 516 EDIPSQ 521 (822)
T ss_pred CchhHH
Confidence 998543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-14 Score=125.55 Aligned_cols=378 Identities=12% Similarity=0.100 Sum_probs=259.3
Q ss_pred HhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhc-cCCCh-------------------------HHHHHhcccCCC
Q 041942 14 KCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVV-IPGAI-------------------------NYAHKMFVKITE 67 (498)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~-------------------------~~A~~~~~~~~~ 67 (498)
+.+..+++--+++.|.+.|...++.+-..|++ ..+- ...++ +-|. ++-+..+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~-LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L~~E~~P 204 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFR-LVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-LLFETLP 204 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHH-HHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-HHHhhcC
Confidence 56777888899999999998888887777665 2221 01111 1122 3333345
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHH
Q 041942 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147 (498)
Q Consensus 68 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 147 (498)
.+..+|..+|.++++-...+.|.++|++-.....+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 677899999999999999999999999998888899999999999875433 2378999999999999999999999
Q ss_pred HHHHhcCChhHHHHhhc----c----CCCCCcchHHHHHHHHHhcCChHH-HHHHHhcCC------------CCCcchHH
Q 041942 148 YFHANCGDLNTASVLFD----G----DAKMDVVAWSSLTAGYARRGELSM-ARSLFDEMP------------VRDLVSWN 206 (498)
Q Consensus 148 ~~~~~~g~~~~A~~~~~----~----~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~------------~~~~~~~~ 206 (498)
++..+.|+++.|.+.+- + +.+|...+|..+|..+++.++..+ |..++.++. +.|...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999999988766553 3 346899999999999999988755 344444333 34556788
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--------CC---hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041942 207 VMITGYAKQGEMEKANELFNEVPK--------RD---VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275 (498)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 275 (498)
..+..|....+.+-|..+-.-+.. ++ ..-|..+..+.++....+..+..|+.|+..-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 888999999999999888766552 12 2345667788888899999999999999888889999999999
Q ss_pred HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC-C--------HHH-----HHHHHh-------cCCC--
Q 041942 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG-S--------IER-----AIEVFL-------GMRD-- 332 (498)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--------~~~-----A~~~~~-------~~~~-- 332 (498)
.+....+.++-..+++ .-+...|.........-++..+++.. + +.. |..+++ ++.+
T Consensus 441 rA~~v~~~~e~ipRiw-~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIW-KDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHhhcCcchhHHHHH-HHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 9999999999999988 44444443222222222222222211 0 000 111111 1111
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV----RPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
-.....+..+-.+.+.|+.++|.+++.-..+.+- .|.-....-++..-.+..+...|..+++.+..
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1334555555566666666666666666644321 22233333445555555666666666666644
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-14 Score=136.64 Aligned_cols=261 Identities=15% Similarity=0.098 Sum_probs=164.4
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-------CCh------hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 041942 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPK-------RDV------VSWNAMISGYVLCGMNKQALEMFEEMRSVGER 265 (498)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 265 (498)
.+.+...|.+...+...|+++.|...|+.... ++. .+-..+...+-..++++.|.+.|+.+.+. .
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--h 526 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--H 526 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--C
Confidence 34445555556666666666666666655442 111 11222444444555666666666666654 2
Q ss_pred CCH-HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChhHHH
Q 041942 266 PDD-VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-----DRDVSTWS 339 (498)
Q Consensus 266 p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~ 339 (498)
|+- ..|..+.......+...+|...++..+......|++. +.+...+.+...+..|.+-|..+. .+|+.+.-
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ar--sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNAR--SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHH--HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 332 2233333222334566667666656655554444443 335556666666666666444332 13545545
Q ss_pred HHHHHHHh------------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--
Q 041942 340 TLIGGLAF------------HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-- 405 (498)
Q Consensus 340 ~l~~~~~~------------~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-- 405 (498)
.|...|.+ .+..++|+++|.+.++.. +-|...-+.+...++..|++..|..+|.++++...-.+|
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~ 683 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVW 683 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCcee
Confidence 55554443 235678889998888843 335677777888888999999999999999884332444
Q ss_pred ---hhHHHhhCChHHHHHHHHHHHccC--CCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 406 ---IRHYGVHGDVELGRLANKRLLNMR--KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 406 ---~~~y~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+..|..+|++..|.++|+..+... .+++.+...|+.++.+.|.+.+|.+.+...+...+
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 677889999999999999998643 34678899999999999999999998887765443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.9e-14 Score=135.53 Aligned_cols=393 Identities=12% Similarity=0.038 Sum_probs=219.9
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCC--CCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHH
Q 041942 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIK--PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRN 144 (498)
Q Consensus 67 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 144 (498)
..|+++.+.|...|.-.|++..++.+...+...... .-...|-.+.+++-..|+++.|...|.+..+....--...+.
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 445556666666666666666666666666543211 112335555666666666666666666655543211123334
Q ss_pred HHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcC----ChHHHHHHHhcCC---CCCcchHHHHHHHHHh
Q 041942 145 SLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRG----ELSMARSLFDEMP---VRDLVSWNVMITGYAK 214 (498)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 214 (498)
.|..+|.+.|+++.+...|+.+.+ .+..+...+...|...+ ..+.|..++.+.. +.|...|..+...+-.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 566666666666666666665443 23334444444444443 3455555555554 3344455555444433
Q ss_pred cCC------hHHHHHHHhhCC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHH
Q 041942 215 QGE------MEKANELFNEVP-KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV---GERPDD------VTMLSLLTAC 278 (498)
Q Consensus 215 ~~~------~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~~~~~li~~~ 278 (498)
..- +..|..++.... ...+...|.+...+...|++.+|...|+..... -..++. .+-..+...+
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 322 222332222221 234456666666667777777777777666533 112222 1222334444
Q ss_pred hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHH
Q 041942 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESI 355 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 355 (498)
-..++.+.|...|...+..++.- +..|-.+..+....+...+|...+....+ .|+..++.+...|.....+..|.
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~Y--Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGY--IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchh--HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 55567777777775555544321 11222222222234566677777665543 46667777777777777777777
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHhh------------cCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCC
Q 041942 356 AMFREMQRLK-VRPTEITFVGVLVACSH------------AGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGD 414 (498)
Q Consensus 356 ~~~~~m~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~ 414 (498)
+-|....+.- ..+|..+...|.+.|.+ .+..++|+++|+++.+ ..|. .......|+
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccC
Confidence 7665554421 12455555555554432 2346677777777766 3443 333447788
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+.+|..+|.++.+--.+.+.+|..++.+|+.+|+|..|+++|+...++-.
T Consensus 662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888876667778888888888888888888888888766544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-13 Score=120.39 Aligned_cols=319 Identities=14% Similarity=0.137 Sum_probs=233.5
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcc--cchh-hHHHHHHHHHHhCCCCChHHHHH
Q 041942 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL--LYRN-MGFCVHGKIVKYGFEFNRFVRNS 145 (498)
Q Consensus 69 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--~~~~-~a~~~~~~~~~~~~~~~~~~~~~ 145 (498)
.+.+=|.|+.. ...|.++++.-+|+.|.+.|++.+...-..|++..+-. .+.. .-++.|-.|...| +.+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 34566777665 45789999999999999999888888776666653322 2222 2244455555554 2233333
Q ss_pred HHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHH
Q 041942 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKA 221 (498)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A 221 (498)
+.|++.+ ++-+..+++..++.+||.++|+--..+.|.+++.+.. +.+..+||.+|.+-.-..+-+-.
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv 261 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLV 261 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHH
Confidence 3455444 5556667788899999999999999999999999887 56777889888775554443333
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHhCCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHH-HHHHHHHHH
Q 041942 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQ----ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVG-KKVHCTLLD 296 (498)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a-~~~~~~~~~ 296 (498)
-+....-..||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+. ..++.+.+.
T Consensus 262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 333333346999999999999999998765 567889999999999999999999999998887553 333323322
Q ss_pred h---h----cCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--------CC---hhHHHHHHHHHHhCCCHHHHHHHH
Q 041942 297 M---T----SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--------RD---VSTWSTLIGGLAFHGFAEESIAMF 358 (498)
Q Consensus 297 ~---~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~A~~~~ 358 (498)
. . ..+.|...|..-+..|....+.+-|..+-.-+.. ++ ..-|..+....++....+.-..+|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1123455667778888888999888887665542 11 234566777888888999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcC
Q 041942 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401 (498)
Q Consensus 359 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 401 (498)
+.|+-.-+-|+..+...++++..-.|.++-..++|..++. +|
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~g 463 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YG 463 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hh
Confidence 9999887889999999999999999999999998888877 55
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-12 Score=120.70 Aligned_cols=418 Identities=12% Similarity=0.081 Sum_probs=229.9
Q ss_pred CCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHH----HHhCCCCCCHhhHHHHHHHhhcccchhhH
Q 041942 52 PGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQ----MEKCSIKPNKFTFSFVLKACTRLLYRNMG 124 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~~~~~li~~~~~~~~~~~a 124 (498)
..-++.|..++.... +.+...|.+-...=-++|+.+...+++.+ +...|+..+...|..=...|-+.|..-.+
T Consensus 419 LetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc 498 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC 498 (913)
T ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH
Confidence 334555555544443 44455555444444455555555555443 23345555555555555555555555555
Q ss_pred HHHHHHHHHhCCCC--ChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC-
Q 041942 125 FCVHGKIVKYGFEF--NRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP- 198 (498)
Q Consensus 125 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 198 (498)
..+....+..|+.- -..+|+.-...|.+.+-++-|..+|....+ .+...|......--..|..+....+|++..
T Consensus 499 QAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~ 578 (913)
T KOG0495|consen 499 QAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE 578 (913)
T ss_pred HHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555555555432 233555555555555555555555554333 233334444444444455555555555554
Q ss_pred --CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 041942 199 --VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLS 273 (498)
Q Consensus 199 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 273 (498)
+.....|......+...|++..|..++..+.+ .+...|-+-+..-....+++.|..+|.+.... .|+...|.-
T Consensus 579 ~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mK 656 (913)
T KOG0495|consen 579 QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMK 656 (913)
T ss_pred hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHH
Confidence 22333444444455555555555555555443 13334555555555555555555555555432 344444444
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCC
Q 041942 274 LLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGF 350 (498)
Q Consensus 274 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 350 (498)
-+....-.++.++|.+++++.++.... -...|..+.+.+-+.++++.|.+.|..=.+ | .+..|-.|...=.+.|+
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp~--f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFPD--FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCCc--hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence 444444455555555555444433321 223444455555555555555555543332 2 23344444444445555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc------------------------------
Q 041942 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY------------------------------ 400 (498)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------------------------ 400 (498)
.-+|..++++..-.+ +-+...|...++.-.+.|+.+.|..++.+..++.
T Consensus 735 ~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc 813 (913)
T KOG0495|consen 735 LVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC 813 (913)
T ss_pred hhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc
Confidence 555555555555433 2234455555555555555555555555444321
Q ss_pred CCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCceeEEEe
Q 041942 401 NIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEA 475 (498)
Q Consensus 401 ~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 475 (498)
.-.|. ...|....+++.|+.-|++++..+|++..+|.-+-..+.++|.-++-.+++.+... .+|.-|..|+.+
T Consensus 814 e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 814 EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 11222 23333778899999999999999999999999999999999999999999988876 456678888776
Q ss_pred c
Q 041942 476 D 476 (498)
Q Consensus 476 ~ 476 (498)
.
T Consensus 892 S 892 (913)
T KOG0495|consen 892 S 892 (913)
T ss_pred h
Confidence 6
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-13 Score=120.89 Aligned_cols=403 Identities=11% Similarity=0.092 Sum_probs=306.1
Q ss_pred CCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHhhcccchhhHHHH
Q 041942 52 PGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF-TFSFVLKACTRLLYRNMGFCV 127 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~ 127 (498)
++++..|.++|++.. ..+...|-..+..=.++..+..|..+++..... -|-+. .|---+..=-..|+...|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 678889999999987 667778888999999999999999999999874 44433 333333344566999999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhcc--CCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC------C
Q 041942 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG--DAKMDVVAWSSLTAGYARRGELSMARSLFDEMP------V 199 (498)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~ 199 (498)
|+...+ ..|+...|++.++.-.+...++.|..+++. +..|++.+|-.....-.+.|+...|..+|+... .
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 999987 589999999999999999999999999997 446899999999998999999999999998877 2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCC--C---ChhhHHHHHHHHHhCCChHHHHHH--------HHHHHhCCCCC
Q 041942 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPK--R---DVVSWNAMISGYVLCGMNKQALEM--------FEEMRSVGERP 266 (498)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~--------~~~m~~~g~~p 266 (498)
.+...+.+....-.++..++.|.-+|+-..+ | ....|..+...=-+-|+.....+. |+.+++.+ +-
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~ 320 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CC
Confidence 2334566666666677888889888876654 2 233455555444455665544433 44455443 45
Q ss_pred CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHH--------HhcCCHHHHHHHHhcCCC---CCh
Q 041942 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMY--------AKCGSIERAIEVFLGMRD---RDV 335 (498)
Q Consensus 267 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~A~~~~~~~~~---~~~ 335 (498)
|-.+|--.+..-...|+.+...++|+..+...+.......|...|..+ ....+.+.+.++|+...+ ...
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 667777778877888999999999977765544333333343333322 246788888888876553 233
Q ss_pred hH----HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 041942 336 ST----WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHYG 410 (498)
Q Consensus 336 ~~----~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~ 410 (498)
.| |-.....-.++.+...|.+++...+. ..|...+|...|..-.+.+++|.+..++++.++ ..|. ..++.
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~c~~W~ 475 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPENCYAWS 475 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHhhHHHH
Confidence 34 44444555578899999999998875 789999999999999999999999999999988 6776 22222
Q ss_pred -------hhCChHHHHHHHHHHHccCCCCC--chHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 411 -------VHGDVELGRLANKRLLNMRKDES--GDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 411 -------~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
..|+.+.|+.+|+.+++....+. ..|...+..-...|.++.|..+|+++++..-
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 88999999999999997544332 5789999999999999999999999987643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=137.83 Aligned_cols=248 Identities=15% Similarity=0.170 Sum_probs=105.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 041942 207 VMITGYAKQGEMEKANELFNEV-PK----RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281 (498)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~-~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 281 (498)
.+...+.+.|++++|.++++.. .. .+...|..+...+...++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3456666777777777777432 22 24455666666777778888888888888766522 45556666665 677
Q ss_pred CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChhHHHHHHHHHHhCCCHHHHHH
Q 041942 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR-----DRDVSTWSTLIGGLAFHGFAEESIA 356 (498)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~ 356 (498)
+++++|..++....+.. +++..+..++..+.+.++++++.++++.+. ..+...|..+...+.+.|+.++|++
T Consensus 91 ~~~~~A~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD---GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc---cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888774444332 344555667777888888888888877643 2467788888999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCC
Q 041942 357 MFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRK 430 (498)
Q Consensus 357 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~ 430 (498)
.+++..+ ..|+ ......++..+...|+.+++.++++...+..+-.|. ...|...|+.++|...++++...+|
T Consensus 168 ~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 168 DYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9999998 5575 777888999999999999999999988874344555 5556689999999999999999999
Q ss_pred CCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 431 DESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 431 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
+|+.+...++.++...|+.++|..++++..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999988754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-12 Score=116.56 Aligned_cols=374 Identities=13% Similarity=0.037 Sum_probs=254.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCC-hHHHHHHHHHH
Q 041942 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN-KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN-RFVRNSLIYFH 150 (498)
Q Consensus 73 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 150 (498)
+-...+-|.++|++++|++.|.+..+ ..|+ +..|.....+|...|+++.+.+.-.+.++. .|+ ...+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 44455678899999999999999998 4788 777888888899999999999988888875 344 44666677788
Q ss_pred HhcCChhHHHHhh------ccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcc------------------
Q 041942 151 ANCGDLNTASVLF------DGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLV------------------ 203 (498)
Q Consensus 151 ~~~g~~~~A~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~------------------ 203 (498)
-..|++++|+.=. +.....+ ...++.-..+.--..++.+-+..-. -|+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s---~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNAS---IEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccch---hHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 8888888875421 1111100 0111111111111122222222111 11111
Q ss_pred -----hHHHHHHHHHh--cC---ChHHHHHHHhhCC-------CCC---------hhhHHHHHHHHHhCCChHHHHHHHH
Q 041942 204 -----SWNVMITGYAK--QG---EMEKANELFNEVP-------KRD---------VVSWNAMISGYVLCGMNKQALEMFE 257 (498)
Q Consensus 204 -----~~~~l~~~~~~--~~---~~~~A~~~~~~~~-------~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~ 257 (498)
....+..++.. .+ .+..|...+.+-. ..+ ..+.....-.+.-.|+.-.|..-|+
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 11111111111 01 2222322222211 011 1122222233445688899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC---C
Q 041942 258 EMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR---D 334 (498)
Q Consensus 258 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~ 334 (498)
..+.....++. .|..+...|....+.++....|.....-.+ .++.+|..-.+++.-.+++++|..-|++...- +
T Consensus 351 ~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp--~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 351 AAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP--ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred HHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC--CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh
Confidence 99977544333 377777889999999999999955555444 34455556677777889999999999987753 5
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-------hh
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-------IR 407 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~ 407 (498)
...|-.+..+..+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.++..++ +.|+ +.
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAA 503 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccch
Confidence 567777777788899999999999999885 555588999999999999999999999999987 4444 11
Q ss_pred HHH--------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 408 HYG--------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 408 ~y~--------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
.+. =.+++..|..+++++++++|..-.+|..|+....++|+.++|+++|++..
T Consensus 504 plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 504 PLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111 23899999999999999999999999999999999999999999999864
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.7e-13 Score=128.96 Aligned_cols=312 Identities=16% Similarity=0.162 Sum_probs=215.6
Q ss_pred HHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHH
Q 041942 149 FHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKAN 222 (498)
Q Consensus 149 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 222 (498)
.....|++++|.+++.++.+ .....|..|...|-..|+.+++...+-..- +.|...|..+.....+.|+++.|.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 33444777777777766554 344567777777777777777766554333 556667777777777778888888
Q ss_pred HHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccCCchHHHHHHHHHH
Q 041942 223 ELFNEVPKR---DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVT----MLSLLTACADLGDLEVGKKVHCTLL 295 (498)
Q Consensus 223 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~li~~~~~~~~~~~a~~~~~~~~ 295 (498)
-.|.++.+. +...+---+..|.+.|+...|+..|.++.....+.|..- ....++.+...++-+.|.+++....
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777653 333444456677777888888888888776643222222 2233455556666677777776666
Q ss_pred HhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC----C---------------------------ChhHHHHHHHH
Q 041942 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD----R---------------------------DVSTWSTLIGG 344 (498)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~---------------------------~~~~~~~l~~~ 344 (498)
...+...+...++.++..|.+...++.|......+.. + +...+ .+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 6555555666667777777777777777766544432 1 12221 22233
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC------hhHHHhhCChH
Q 041942 345 LAFHGFAEESIAMFREMQRLKVRPT--EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN------IRHYGVHGDVE 416 (498)
Q Consensus 345 ~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~y~~~g~~~ 416 (498)
+...+..+....+..-.....+.|+ ...|.-+..++.+.|++..|..++..+....+..-. ...|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 4445555555555666666665553 667888999999999999999999999883332221 44555889999
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
+|...|++++.+.|++..+...|+..+.+.|++++|.+++..|..
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999863
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-11 Score=118.88 Aligned_cols=342 Identities=13% Similarity=0.086 Sum_probs=217.1
Q ss_pred CCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHH
Q 041942 52 PGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 128 (498)
.|++++|.+++.++. +.+...|..|...|-+.|+.+++...+-..-... +-|...|..+..-..+.|++++|.-+|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 488888888888876 4456778888888888888888887776554432 346677888888778888888888888
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCc----ch----HHHHHHHHHhcCChHHHHHHHhcCC--
Q 041942 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV----VA----WSSLTAGYARRGELSMARSLFDEMP-- 198 (498)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~----~~~l~~~~~~~~~~~~A~~~~~~~~-- 198 (498)
.+.++.. +++...+-.-...|-+.|+...|..-|.++.+.++ .- -..+++.+...++-+.|.+.++...
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 8888875 44555555566778888888888877776554322 11 2233455666666677777777665
Q ss_pred ---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--------------------------CChhhHH----HHHHHHHh
Q 041942 199 ---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK--------------------------RDVVSWN----AMISGYVL 245 (498)
Q Consensus 199 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~----~l~~~~~~ 245 (498)
.-+...++.++..+.+...++.|......... ++..+|. .++-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 23445677777777777777777766554431 0111111 12233334
Q ss_pred CCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHH
Q 041942 246 CGMNKQALEMFEEMRSVGERP--DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323 (498)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (498)
.+..+....+...+....+.| +...|.-+..++...|++..|..++ ..+......-+..+|-.+..+|...|..++|
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l-~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL-SPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH-HHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 444444444555555555333 4456777777777777777777777 4444444344466777777777777777777
Q ss_pred HHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 041942 324 IEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQR--------LKVRPTEITFVGVLVACSHAGKVEEGKKY 392 (498)
Q Consensus 324 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 392 (498)
...|+.+.. | +...--.|...+.+.|+.++|.+.+..+.. .+..|+..........+.+.|+.++-..+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 777777664 2 334444566667777777777777777432 23445555555555666666766654444
Q ss_pred HHHh
Q 041942 393 FKLM 396 (498)
Q Consensus 393 ~~~~ 396 (498)
...|
T Consensus 549 ~~~L 552 (895)
T KOG2076|consen 549 ASTL 552 (895)
T ss_pred HHHH
Confidence 4333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-12 Score=116.80 Aligned_cols=400 Identities=15% Similarity=0.067 Sum_probs=213.3
Q ss_pred hHHHHHHHHhhhhccCCChHHHHHhcccCC----CCChhhH-HHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhh----
Q 041942 37 SSALRELIYSGSVVIPGAINYAHKMFVKIT----EPDTFMY-NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFT---- 107 (498)
Q Consensus 37 ~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---- 107 (498)
-.++..|.. -|.. ..-..+|+..++-+. .||.... -.+.+.+.+...+.+|+++|+..+..-...+..+
T Consensus 201 fsvl~nlaq-qy~~-ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 201 FSVLFNLAQ-QYEA-NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred HHHHHHHHH-Hhhh-hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 334444444 5555 566677777776665 4554332 2345567778888889988887766422222233
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC----------------CCc
Q 041942 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK----------------MDV 171 (498)
Q Consensus 108 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~ 171 (498)
.+.+--.+.+.|.++.|..-|+...+. .|+..+-..|+-++..-|+-++..+.|.++.. |+.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 233333467889999999998888875 57777666677777788888888888865432 122
Q ss_pred chHHH-----HHHHHHhcC--ChHHHHHHHhcCC----CCCcc---hH----------HH--------HHHHHHhcCChH
Q 041942 172 VAWSS-----LTAGYARRG--ELSMARSLFDEMP----VRDLV---SW----------NV--------MITGYAKQGEME 219 (498)
Q Consensus 172 ~~~~~-----l~~~~~~~~--~~~~A~~~~~~~~----~~~~~---~~----------~~--------l~~~~~~~~~~~ 219 (498)
...+. .+.-+-+.+ +.++++-.--++. .|+.. -| .- -...+.+.|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 22221 222222222 1222222222222 22211 00 00 123467888899
Q ss_pred HHHHHHhhCCCCChhhHHH----H--HHHH----------------------------------HhCCChHHHHHHHHHH
Q 041942 220 KANELFNEVPKRDVVSWNA----M--ISGY----------------------------------VLCGMNKQALEMFEEM 259 (498)
Q Consensus 220 ~A~~~~~~~~~~~~~~~~~----l--~~~~----------------------------------~~~g~~~~a~~~~~~m 259 (498)
.|.++++-..+.|..+-.+ | +..+ ...|++++|.+.|++.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 8888887766533221111 1 1111 1234555555555555
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChh
Q 041942 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVS 336 (498)
Q Consensus 260 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~ 336 (498)
....-.-....|++ .-.+-..|++++|...|-++.. -...+..+...+...|....+...|.+++.+.. ..|+.
T Consensus 517 l~ndasc~ealfni-glt~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ 593 (840)
T KOG2003|consen 517 LNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA 593 (840)
T ss_pred HcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH
Confidence 53321111112221 1123345555555555522211 112233344445555555556666666554443 23555
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCCh--------hH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI--------RH 408 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~ 408 (498)
...-|...|-+.|+-.+|.+.+-+--+- ++.+..+...|...|....-+++++.+|++..- +.|+. ..
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal---iqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL---IQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh---cCccHHHHHHHHHHH
Confidence 6666666666666666666554443331 333555666666666666666666666666543 56662 23
Q ss_pred HHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC
Q 041942 409 YGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447 (498)
Q Consensus 409 y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (498)
+.+.|++++|...|+......|.|...+..|+..+...|
T Consensus 670 ~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 336677777777777777777777766666666666665
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-13 Score=126.60 Aligned_cols=270 Identities=13% Similarity=0.093 Sum_probs=217.6
Q ss_pred cCChHHHHHHHhcCC--CCC-cchHHHHHHHHHhcCChHHHHHHHhhCCC------CChhhHHHHHHHHHhCCChHHHHH
Q 041942 184 RGELSMARSLFDEMP--VRD-LVSWNVMITGYAKQGEMEKANELFNEVPK------RDVVSWNAMISGYVLCGMNKQALE 254 (498)
Q Consensus 184 ~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~ 254 (498)
.-+..+|+..|..+. .++ ..+...+..+|...+++++|+++|+.+.+ .+...|...+..+-+ +-++.
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 346789999999855 333 45566778999999999999999999875 366788888877643 22333
Q ss_pred HHHH-HHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 041942 255 MFEE-MRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR 333 (498)
Q Consensus 255 ~~~~-m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 333 (498)
.+-+ +... -+-.+.+|.++..+|+-+++.+.|++.|+..+.-. +-....|+.+..-+.....+|.|...|+.....
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 3322 2322 25577899999999999999999999995555422 225678888888888999999999999998887
Q ss_pred ChhHHH---HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----
Q 041942 334 DVSTWS---TLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN---- 405 (498)
Q Consensus 334 ~~~~~~---~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---- 405 (498)
|+..|+ -+...|.++++++.|+-.|+++.+ +.|. .+....+...+-+.|+.|+|+++++++.. ++|.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~ 559 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLC 559 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchh
Confidence 766555 477889999999999999999998 6674 66777788889999999999999999977 4544
Q ss_pred ----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 406 ----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 406 ----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
+..+...+++++|...++++.++.|++..++..++..|.+.|+.+.|+.-|--|.+...+
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 334448899999999999999999999999999999999999999999999988876654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-12 Score=120.59 Aligned_cols=240 Identities=15% Similarity=0.071 Sum_probs=149.5
Q ss_pred hcccchhhHHHHHHHHHHhCCCCChHHHH--HHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHH
Q 041942 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRN--SLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMA 190 (498)
Q Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 190 (498)
.+.|+++.+.+.+.++.+. .|+..... .....+...|+++.|.+.++...+ .++.....+...|.+.|+|++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4445555555555555442 22222111 223444455555555555544332 2333444455555555555555
Q ss_pred HHHHhcCCC---CCc--------chHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHH
Q 041942 191 RSLFDEMPV---RDL--------VSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMF 256 (498)
Q Consensus 191 ~~~~~~~~~---~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 256 (498)
..++..+.+ .+. .+|..++.......+.+...++++.+.+ .++.....+...+...|+.++|..++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555541 111 1233333333444556666667766653 46777888888888999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC--CCC
Q 041942 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR--DRD 334 (498)
Q Consensus 257 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~ 334 (498)
++..+. +|+.... ++.+....++.+++.+..++..+..+ -|+....++...+.+.+++++|.+.|+... .|+
T Consensus 287 ~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P--~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 287 LDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG--DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 888774 4555322 33444456888888888866665554 445566778888999999999999998876 477
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
...|..+...+.+.|+.++|.+++++...
T Consensus 361 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 361 AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888899999999999999999988754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.4e-12 Score=117.98 Aligned_cols=215 Identities=13% Similarity=0.013 Sum_probs=128.3
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcch------hhHHHHHHHH
Q 041942 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV------LHGNALIDMY 314 (498)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~ 314 (498)
..+...|++++|...++++.+.. +-+...+..+...|...|++++|..++..+.+.....+.. ..|..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554443 2233444444445555555555555552222222111110 1112223323
Q ss_pred HhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 041942 315 AKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391 (498)
Q Consensus 315 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 391 (498)
....+.+...++++.+.. .++.....+...+...|+.++|.+++++..+ ..|+.... ++.+....++.+++.+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHH
Confidence 334445566666666643 3666777778888888888888888888777 34454322 2334445578888888
Q ss_pred HHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 392 YFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 392 ~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
..+...+.++-+|+ ...+.+.+++++|+..|+++++..|++ ..+..|+.++.+.|+.++|.++|++-..
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88887774444444 333347788888888888888887775 4577899999999999999999998754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-10 Score=104.81 Aligned_cols=420 Identities=10% Similarity=0.036 Sum_probs=246.7
Q ss_pred HHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhC
Q 041942 23 QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC 99 (498)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 99 (498)
+++....++ ++.++..|...+. -.+.++|..++.+.. +.+...|. ++++..-++.|..++++.++.
T Consensus 367 RVlRKALe~-iP~sv~LWKaAVe------lE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 367 RVLRKALEH-IPRSVRLWKAAVE------LEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHh-CCchHHHHHHHHh------ccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence 344444443 3444455554444 334455666666654 33333333 445555667777777777664
Q ss_pred CCCCCHhhHHHHHHHhhcccchhhHHHHHHHHH----HhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC------C
Q 041942 100 SIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV----KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK------M 169 (498)
Q Consensus 100 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~ 169 (498)
++.+...|.+....=-+.|+.+.+.+++.+-+ ..|+..+..-|..=...+-..|-.-.+..+...... .
T Consensus 436 -iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 436 -IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred -CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 56666777666655556677777766665443 356666666666666666666666655555543221 1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHH
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGY 243 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 243 (498)
-..+|..-...|.+.+.++-|..+|.... +.+...|......--..|..+.-..+|++... .....|-.....+
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 22356666666777777777777766665 44455666666655666667777777766653 2344555555666
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHH
Q 041942 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (498)
-..|++..|..++.+..+... -+...+...+........++.|+.+|.+... ..++..+|.--+...--.++.++|
T Consensus 595 w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHH
Confidence 666777777777777666542 2555666666666777777777777733322 334555555555555556677777
Q ss_pred HHHHhcCCC--CC-hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 324 IEVFLGMRD--RD-VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 324 ~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
.+++++..+ |+ ...|..+...+.+.++.+.|.+.|..-.+ ..|+ ...|..|...--+.|++..|..++++.+-
T Consensus 671 ~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarl- 747 (913)
T KOG0495|consen 671 LRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL- 747 (913)
T ss_pred HHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh-
Confidence 777765554 22 34566666677777777777766665444 3444 44455555555666677777777777655
Q ss_pred cCCCCChh--------HHHhhCChHHHHHHHHHHHccCCC------------------------------CCchHHHHHH
Q 041942 400 YNIEPNIR--------HYGVHGDVELGRLANKRLLNMRKD------------------------------ESGDYVLLSN 441 (498)
Q Consensus 400 ~~~~p~~~--------~y~~~g~~~~a~~~~~~~~~~~~~------------------------------~~~~~~~l~~ 441 (498)
-+|+.. +=.+.|+.+.|.....++++--|+ |+.+...++.
T Consensus 748 --kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~ 825 (913)
T KOG0495|consen 748 --KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAK 825 (913)
T ss_pred --cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHH
Confidence 344411 112667777776666666654433 4445555666
Q ss_pred HHHhCCCchHHHHHHHHhhhCC
Q 041942 442 IYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.+....+++.|.+-|.+..+.+
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccC
Confidence 6666666666666666665543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-12 Score=113.76 Aligned_cols=375 Identities=14% Similarity=0.117 Sum_probs=258.8
Q ss_pred hhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC--CCCh------hhHHHHHHHHhccCChHHHH
Q 041942 19 RTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT--EPDT------FMYNTIIRGSAQSQNPLDAV 90 (498)
Q Consensus 19 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~------~~~~~ll~~~~~~g~~~~A~ 90 (498)
..|...++.+.+...-|+...+..-|..++-+ ...+..|.+.++-.. .|++ ...+.+.-.+.+.|.++.|+
T Consensus 218 ~ealntyeiivknkmf~nag~lkmnigni~~k-kr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFK-KREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHhhhhhhhhcccccCCCceeeeeecceeee-hhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 35666777777777777777666655556777 788899998876554 3332 34555555688999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCC------------CChHHHHHH-----HHHHHhc
Q 041942 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE------------FNRFVRNSL-----IYFHANC 153 (498)
Q Consensus 91 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~l-----~~~~~~~ 153 (498)
..|+...+. .|+..+-..|+-++.--|+.+...+.|.+|+..-.. |+....+.- +.-.-+.
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 999998774 688877666666667779999999999999764222 333333322 2222222
Q ss_pred CC--hhHH----HHhhccCCCCCcch-------------HHH--------HHHHHHhcCChHHHHHHHhcCCCCCcchHH
Q 041942 154 GD--LNTA----SVLFDGDAKMDVVA-------------WSS--------LTAGYARRGELSMARSLFDEMPVRDLVSWN 206 (498)
Q Consensus 154 g~--~~~A----~~~~~~~~~~~~~~-------------~~~--------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 206 (498)
+. .+++ .++..-+..|+-.. +.. -...+.+.|+++.|++++..+...|..+-.
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 21 1111 12222222232110 111 123477899999999998877633333221
Q ss_pred HH----------------------------------------HHHHHhcCChHHHHHHHhhCCCCChhhHHHHH---HHH
Q 041942 207 VM----------------------------------------ITGYAKQGEMEKANELFNEVPKRDVVSWNAMI---SGY 243 (498)
Q Consensus 207 ~l----------------------------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~ 243 (498)
+. .......|++++|.+.+++....|..+-.+|. -.+
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~ 534 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTA 534 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH
Confidence 11 00112457889999999988877766544443 346
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHH
Q 041942 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (498)
-..|+.++|++.|-++... +..+..++..+...|....+...|++++.+. ..-++.|+.+.+.|...|-+.|+-..|
T Consensus 535 e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~--~slip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA--NSLIPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh--cccCCCCHHHHHHHHHHhhcccchhhh
Confidence 6789999999999877532 1345667777888898999999999987222 234566788999999999999999999
Q ss_pred HHHHh-cCC--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hhcCCHHHHHHHHHHhHHh
Q 041942 324 IEVFL-GMR--DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC-SHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 324 ~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~ 399 (498)
....- ... .-|..+..-|...|....-+++++.+|++..- +.|+..-|..++..| .+.|++.+|.++++.+.++
T Consensus 612 fq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 612 FQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 88753 333 24788888899999999999999999999877 889999999888655 5689999999999999775
Q ss_pred cC
Q 041942 400 YN 401 (498)
Q Consensus 400 ~~ 401 (498)
++
T Consensus 690 fp 691 (840)
T KOG2003|consen 690 FP 691 (840)
T ss_pred Cc
Confidence 33
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.8e-11 Score=105.25 Aligned_cols=394 Identities=12% Similarity=0.065 Sum_probs=297.6
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHH
Q 041942 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIY 148 (498)
Q Consensus 69 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 148 (498)
+...|-.....=...+++..|..+|+..+... .-+...|.--+.+=.+......|..+++..+..- +.-...|...+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 44556555555667789999999999998754 4455667777777778889999999999998863 333456777777
Q ss_pred HHHhcCChhHHHHhhccCC--CCCcchHHHHHHHHHhcCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHHHHHH
Q 041942 149 FHANCGDLNTASVLFDGDA--KMDVVAWSSLTAGYARRGELSMARSLFDEMP--VRDLVSWNVMITGYAKQGEMEKANEL 224 (498)
Q Consensus 149 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 224 (498)
+--..|++..|.++|+... +|+...|.+.+..-.+...++.|..++++.. .|++.+|..-...-.+.|.+..|..+
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 7778899999999999755 4899999999999999999999999999988 89999999999888999999999999
Q ss_pred HhhCCC--C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCchHHHHH------
Q 041942 225 FNEVPK--R----DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD--DVTMLSLLTACADLGDLEVGKKV------ 290 (498)
Q Consensus 225 ~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~------ 290 (498)
|+...+ . +...+.+....=.++..++.|..+|+-.+..- +-+ ...|..+...--+-|+.......
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 988774 1 23345555555566788899999998887652 222 33444444443445554443332
Q ss_pred --HHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC---hhHHHHHH--------HHHHhCCCHHHHH
Q 041942 291 --HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RD---VSTWSTLI--------GGLAFHGFAEESI 355 (498)
Q Consensus 291 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~l~--------~~~~~~~~~~~A~ 355 (498)
|+..+..+ +.|..+|--.+..-...|+.+...++|++... |. -..|...| -.=....+.+.+.
T Consensus 309 ~qYE~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 22333333 35566677778888888999999999998763 21 11222222 1123467999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHH----hhcCCHHHHHHHHHHhHHhcCCCCChhHHH-------hhCChHHHHHHHH
Q 041942 356 AMFREMQRLKVRP-TEITFVGVLVAC----SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------VHGDVELGRLANK 423 (498)
Q Consensus 356 ~~~~~m~~~~~~p-~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~-------~~g~~~~a~~~~~ 423 (498)
++|+..++ +-| ...||..+--.| +++.++..|.+++... .|.-|-...|. +.++++..+.+|+
T Consensus 387 ~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A---IG~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 387 QVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA---IGKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH---hccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999998 445 466776655444 5778999999999988 55777755554 8899999999999
Q ss_pred HHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCceeE
Q 041942 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSL 472 (498)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 472 (498)
+.++-.|.+..+|...+..-...|+++.|..+|+-..++..-..|..-|
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 9999999999999999999999999999999999999887655555433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.7e-14 Score=126.72 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSVG-ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (498)
.+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|...+++.+...+ .+......++..
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P--~~~~~~~~l~~~ 189 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDP--DDPDARNALAWL 189 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T--T-HHHHHHHHHH
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHH
Confidence 33344444444444444444444443221 122333444444444444444444444433333332 122233344444
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 041942 314 YAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 390 (498)
+...|+.+++.+++.... ..|+..+..+..+|...|++++|+.+|++..+.. +.|+.....+..++...|+.++|.
T Consensus 190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------
T ss_pred HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 444444444443333322 2344455555566666666666666666665521 224555555666666666666666
Q ss_pred HHHHHhH
Q 041942 391 KYFKLMR 397 (498)
Q Consensus 391 ~~~~~~~ 397 (498)
++..++.
T Consensus 269 ~~~~~~~ 275 (280)
T PF13429_consen 269 RLRRQAL 275 (280)
T ss_dssp -------
T ss_pred ccccccc
Confidence 6655543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-11 Score=115.32 Aligned_cols=274 Identities=10% Similarity=0.037 Sum_probs=158.2
Q ss_pred hcCChHHHHHHHhcCC--CCCc-chHHHHHHHHHhcCChHHHHHHHhhCCC--CCh--hhHHHHHHHHHhCCChHHHHHH
Q 041942 183 RRGELSMARSLFDEMP--VRDL-VSWNVMITGYAKQGEMEKANELFNEVPK--RDV--VSWNAMISGYVLCGMNKQALEM 255 (498)
Q Consensus 183 ~~~~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~a~~~ 255 (498)
..|+++.|.+.+.+.. .|++ ..+-....+....|+.+.|.+.+.+..+ |+. .........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 3455555555554444 2222 2223334455555666666666655432 222 1222235555566666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhh-------HHHHHHHHHhcCCHHHHHHHHh
Q 041942 256 FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH-------GNALIDMYAKCGSIERAIEVFL 328 (498)
Q Consensus 256 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~ 328 (498)
++.+.+.. +-+...+..+...+...|+++.|.+.+....+ .+..++... +..++..-......+...+.+.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k-~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK-AGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66666553 22444555666666666666666666633332 222111111 1111111112223344455555
Q ss_pred cCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhhcCCHHHHHHHHHHhHHhcCC
Q 041942 329 GMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF---VGVLVACSHAGKVEEGKKYFKLMRDEYNI 402 (498)
Q Consensus 329 ~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 402 (498)
...+ .++..+..++..+...|++++|.+++++..+. .|+.... ..........++.+.+.+.++...+..+-
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 5543 36777888888888888888888888888874 3443321 11122234457778888888887775555
Q ss_pred CC--C-----hhHHHhhCChHHHHHHHH--HHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 403 EP--N-----IRHYGVHGDVELGRLANK--RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 403 ~p--~-----~~~y~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
+| . ...+.+.|++++|.+.|+ .+.+..|++ ..+..++..+.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55 2 112228888888888888 466666655 4477999999999999999999998643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-11 Score=116.48 Aligned_cols=276 Identities=14% Similarity=0.061 Sum_probs=140.7
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHhh-HHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHH
Q 041942 82 QSQNPLDAVFLYTQMEKCSIKPNKFT-FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160 (498)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 160 (498)
..|+++.|.+.+.+..+. .|+... +-....+..+.|+.+.+.+.+.+..+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456777777766665543 343332 23334445566677777777766655432222223333456666666666666
Q ss_pred HhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHH--------HHHHHHHhcCChHHHHHHHh
Q 041942 161 VLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWN--------VMITGYAKQGEMEKANELFN 226 (498)
Q Consensus 161 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~--------~l~~~~~~~~~~~~A~~~~~ 226 (498)
..++.+.+ .+......+...+.+.|+++.|.+.+..+. ..+...+. .++..-......+...+.+.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66665443 244455566666666666666666666655 22222221 11111111222334444444
Q ss_pred hCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHhccCCchHHHHHHHHHHHhhcC
Q 041942 227 EVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM---LSLLTACADLGDLEVGKKVHCTLLDMTSG 300 (498)
Q Consensus 227 ~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 300 (498)
...+ .+...+..+...+...|+.++|..++++..+.. ||.... ..........++.+.+.+.++...+..+.
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 4442 366677777777788888888888887777653 333210 11111122335555565555444444433
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHhc--C--CCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 301 VAKVLHGNALIDMYAKCGSIERAIEVFLG--M--RDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
.|+.....++...+.+.|++++|.+.|+. . ..|+...+..+...+.+.|+.++|.++|++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33223334455555555555555555552 2 1344444445555555555555555555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-10 Score=104.13 Aligned_cols=297 Identities=15% Similarity=0.131 Sum_probs=209.6
Q ss_pred HhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCC------cchHHHHHHHHHhcCCh
Q 041942 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD------VVAWSSLTAGYARRGEL 187 (498)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 187 (498)
++-.....+++.+-.+.....|++.+...-+....+.-...|+++|+.+|+++.+.| ..+|..++- .+..+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhH
Confidence 344445677777777777777877666666666777777888999999998877643 345554442 222221
Q ss_pred H---HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 041942 188 S---MARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR---DVVSWNAMISGYVLCGMNKQALEMFEEMRS 261 (498)
Q Consensus 188 ~---~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 261 (498)
. .|..++. ..+--+.|.-.+.+-|+-.++.++|...|++..+- ....|+.+.+-|....+...|.+-|+..++
T Consensus 314 kLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 314 KLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 1 1222221 11334456666777788888899999999888763 346788888889999999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHH
Q 041942 262 VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTW 338 (498)
Q Consensus 262 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~ 338 (498)
-. +.|-..|-.+.++|.-.+...-|.-+|++...-. +.|...|.+|.++|.+.++.++|.+.|.+... .+...+
T Consensus 393 i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 393 IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred cC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 64 5577888888999988888888888885555433 46788888999999999999999998887653 345788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC----C-CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhh
Q 041942 339 STLIGGLAFHGFAEESIAMFREMQRL----K-VRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVH 412 (498)
Q Consensus 339 ~~l~~~~~~~~~~~~A~~~~~~m~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~ 412 (498)
..|...|-+.++..+|...|++-++. | +.| .......|..-+.+.+++++|......... | .+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~--~-~~-------- 538 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK--G-ET-------- 538 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc--C-Cc--------
Confidence 88889999889999988888876552 3 223 133334456777888888888887776655 1 22
Q ss_pred CChHHHHHHHHHHHcc
Q 041942 413 GDVELGRLANKRLLNM 428 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~ 428 (498)
..++|..+++++...
T Consensus 539 -e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 539 -ECEEAKALLREIRKI 553 (559)
T ss_pred -hHHHHHHHHHHHHHh
Confidence 356777777776643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-12 Score=118.79 Aligned_cols=270 Identities=11% Similarity=0.038 Sum_probs=177.2
Q ss_pred chhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC------CCcchHHHHHHHHHhcCChHHHHHH
Q 041942 120 YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK------MDVVAWSSLTAGYARRGELSMARSL 193 (498)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~ 193 (498)
+..+|...|..+.+. +.-+..+...+..+|...+++++|+++|+.+.+ .+...|.+.+.-+-+.-...---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 456677777774333 333446667788888888888888888876544 3556677766544332221111111
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH-
Q 041942 194 FDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR---DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV- 269 (498)
Q Consensus 194 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~- 269 (498)
+-.+.+..+.+|-++.++|.-+++.+.|.+.|++..+- ...+|+.+..-+.....+|.|...|+..+ ..|..
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rh 488 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRH 488 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchh
Confidence 11222556778888888888888888888888887753 45677777777778888888888888776 33333
Q ss_pred --HHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHH
Q 041942 270 --TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGG 344 (498)
Q Consensus 270 --~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 344 (498)
.|.-+...|.+.++++.|.-.|++.+.-+ +.+.+....+...+.+.|+.++|+.++++... .|+..--..+..
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 34445666778888888888774444333 23444445566677777778888888776552 355555555666
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 345 LAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 345 ~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+...+++++|+..++++++ +.|+ ...+..+...|-+.|+.+.|..-|.-+..
T Consensus 567 l~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 6667778888888888777 5665 34455555777777777777777766644
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-11 Score=102.55 Aligned_cols=286 Identities=14% Similarity=0.168 Sum_probs=139.8
Q ss_pred cCChhHHHHhhccCCCCCcchHH---HHHHHHHhcCChHHHHHHHhcCC-CCCcc------hHHHHHHHHHhcCChHHHH
Q 041942 153 CGDLNTASVLFDGDAKMDVVAWS---SLTAGYARRGELSMARSLFDEMP-VRDLV------SWNVMITGYAKQGEMEKAN 222 (498)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~-~~~~~------~~~~l~~~~~~~~~~~~A~ 222 (498)
+.+.++|...|-+|.+.|+.++. +|.+.|-+.|..+.|+++-..+. .||.. ....|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45566666666666655544433 45556666666666666666555 33322 1223344455556666666
Q ss_pred HHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCCchHHHHHHHHHH
Q 041942 223 ELFNEVPKRD---VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV----TMLSLLTACADLGDLEVGKKVHCTLL 295 (498)
Q Consensus 223 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~~~ 295 (498)
.+|..+.+.. ......|+..|....+|++|+++-+++.+.+-.+... .|..+...+....+++.|...+.+..
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 6666555421 2344555666666666666666666555544333221 22233333333344444444443333
Q ss_pred HhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041942 296 DMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375 (498)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 375 (498)
.... ..+..--.+.+.+...|+++.|++.|+...+.+..--..+...
T Consensus 208 qa~~---------------------------------~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 208 QADK---------------------------------KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred hhCc---------------------------------cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 3221 1222223344445555555555555555555332222344445
Q ss_pred HHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--hhHHH---hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhC--CC
Q 041942 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYG---VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR--GE 448 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~y~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~ 448 (498)
|..+|...|+.++....+..+.+ ....++ ...|. ...-.+.|...+.+-+...|+-...+..+-.-+... |+
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~-~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAME-TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH-ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 55555555555555555555544 122222 11111 222333444444444444444333333333333333 56
Q ss_pred chHHHHHHHHhhhCCCccCCceeE
Q 041942 449 WNRVEKVRKLMDDSDIKKQPGCSL 472 (498)
Q Consensus 449 ~~~A~~~~~~m~~~~~~~~~~~~~ 472 (498)
+.+.+.+++.|....+...|.+..
T Consensus 334 ~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 334 AKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred hhhhHHHHHHHHHHHHhhcCCcee
Confidence 888899999998776665555533
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-10 Score=112.60 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC----CCChhhHHHHHHHHhccCChHHHHHHHHHHH
Q 041942 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT----EPDTFMYNTIIRGSAQSQNPLDAVFLYTQME 97 (498)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 97 (498)
..++..+...|+.|+.++|..+|. -|+. .|+++.|- +|..|. .-+...|+.++.+..+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLia-rYc~-~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIA-RYCT-KGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHH-HHcc-cCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 468889999999999999999999 8888 99999998 888887 345668999999998888887766
Q ss_pred hCCCCCCHhhHHHHHHHhhcccchhhH
Q 041942 98 KCSIKPNKFTFSFVLKACTRLLYRNMG 124 (498)
Q Consensus 98 ~~~~~p~~~~~~~li~~~~~~~~~~~a 124 (498)
.|...||..|..+|.+.||...-
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~f 102 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILF 102 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHH
Confidence 68899999999999999987763
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-10 Score=101.49 Aligned_cols=273 Identities=15% Similarity=0.067 Sum_probs=179.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHh
Q 041942 83 SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVL 162 (498)
Q Consensus 83 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 162 (498)
.|++..|.++..+-.+.+-.| ...|....++.-+.|+.+.+-.++.+..+.--.++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888888876665332 3345556666777788888888888887754456667777777788888888888776
Q ss_pred hcc---CCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCC-----------CcchHHHHHHHHHhcCChHHHHHHHhhC
Q 041942 163 FDG---DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR-----------DLVSWNVMITGYAKQGEMEKANELFNEV 228 (498)
Q Consensus 163 ~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (498)
++. +.+.++........+|.+.|++.....++..+.+. ...+|..+++-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 654 44456677777788888888888888888777611 1235666676666666666666677766
Q ss_pred CC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchh
Q 041942 229 PK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305 (498)
Q Consensus 229 ~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (498)
.. .++..-..++.-+.+.|+.++|.++.++..+.+..|.. ...-.+.+.++.+.-.+..++.....+..| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 63 45666777888888889999999988888887666652 222345566777777766666666665544 4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMR--DRDVSTWSTLIGGLAFHGFAEESIAMFREMQ 362 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 362 (498)
.+.+|...|.+.+.+.+|...|+... +++..+|+.+..+|.+.|+..+|.+..++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 44555555555555555555555333 2444555555555555555555555554443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-10 Score=101.33 Aligned_cols=314 Identities=15% Similarity=0.109 Sum_probs=210.7
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCc-chHHHHHHHHHhc
Q 041942 137 EFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDL-VSWNVMITGYAKQ 215 (498)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~ 215 (498)
..|...+-...-.+.+.|....|...|......-+..|.+.+....-..+.+.+..+...+...+. ..--.+..++-..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 445444445555566667777777777665554444555544444333444444333322221111 1111233455555
Q ss_pred CChHHHHHHHhhCCC---CC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCc-hHHH
Q 041942 216 GEMEKANELFNEVPK---RD-VVSWNAMISGYVLCGMNKQALEMFEEMRSVGE--RPDDVTMLSLLTACADLGDL-EVGK 288 (498)
Q Consensus 216 ~~~~~A~~~~~~~~~---~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~-~~a~ 288 (498)
...+++..-...... ++ ...-+....+.-...++++|+.+|+++.+... --|..+|+.++-.-.....+ -.|.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 566666555444433 22 22223334445566788899999988887631 11556777666443222111 1122
Q ss_pred HHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 041942 289 KVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365 (498)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 365 (498)
.++ .-. +..+.|..++.+.|+-.++.++|...|++..+- -...|+.+..-|...++...|++-|+++++
T Consensus 321 ~v~----~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-- 392 (559)
T KOG1155|consen 321 NVS----NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD-- 392 (559)
T ss_pred HHH----Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--
Confidence 221 222 233445556778888899999999999988753 356899999999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchH
Q 041942 366 VRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDY 436 (498)
Q Consensus 366 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~ 436 (498)
+.| |-..|-.|.++|.-.+...-|.-.|++..+ +.|+ ...|.+.++.++|.+.|.+++.....+..++
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 555 788999999999999999999999999977 7777 6777899999999999999998877788999
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 437 VLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
..|++.|-+.++.++|...|++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999888765
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-09 Score=96.49 Aligned_cols=279 Identities=16% Similarity=0.126 Sum_probs=168.1
Q ss_pred cCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCCCC--C--cchHHHHHHHHHhcCChHHHHHHH
Q 041942 153 CGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMPVR--D--LVSWNVMITGYAKQGEMEKANELF 225 (498)
Q Consensus 153 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~A~~~~ 225 (498)
.|++..|++...+..+ .....|..-..+--+.|+.+.+-.++.+..++ | ...+.+........|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4666666666544322 22223333344455555666665555555411 2 223334444455555555555544
Q ss_pred hhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc
Q 041942 226 NEVP---KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302 (498)
Q Consensus 226 ~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 302 (498)
.++. ..++........+|.+.|++.....++..|.+.|.--+...- + .
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~------------l 227 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R------------L 227 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H------------H
Confidence 4433 234445555555555555555555555555555433222110 0 0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 379 (498)
...+|..+++-....+..+.-...++.... .++..-.+++.-+.+.|+.++|.++.++..+.+..|+ ......
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 012333444444444444444455665553 3566667777888888888888888888888777666 223345
Q ss_pred HhhcCCHHHHHHHHHHhHHhcCCCCCh-----hHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH
Q 041942 380 CSHAGKVEEGKKYFKLMRDEYNIEPNI-----RHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 380 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
+.+-++...-++..++..+.++..|+. ..|.+.+.+.+|..+|+.++...|+ ...|..++.++.+.|+..+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence 677788888888887777767778873 3334888888888888888876654 5779999999999999999999
Q ss_pred HHHHhhhCCCc
Q 041942 455 VRKLMDDSDIK 465 (498)
Q Consensus 455 ~~~~m~~~~~~ 465 (498)
++++....-..
T Consensus 383 ~r~e~L~~~~~ 393 (400)
T COG3071 383 VRREALLLTRQ 393 (400)
T ss_pred HHHHHHHHhcC
Confidence 99988744333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-10 Score=96.60 Aligned_cols=285 Identities=13% Similarity=0.042 Sum_probs=149.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCCh------HHHHHHHHHHHhcCCh
Q 041942 83 SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNR------FVRNSLIYFHANCGDL 156 (498)
Q Consensus 83 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~ 156 (498)
+.+.++|+++|-+|.+.. +-+..+..+|-+-|-+.|..+.|.++.+.+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 345666666666665521 223344445555555566666666666665542 221 1223444455555555
Q ss_pred hHHHHhhccCCCCCc---chHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCh
Q 041942 157 NTASVLFDGDAKMDV---VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDV 233 (498)
Q Consensus 157 ~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 233 (498)
|.|+.+|..+.+.+. .....|+..|-...+|++|++.-+++.+.+..+|+.-| .
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-----------------------A 180 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-----------------------A 180 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH-----------------------H
Confidence 555555555444221 22334444555555555555544443322222222111 1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (498)
..|--+...+....+++.|..++.+..+.. +-....-..+.......|+++.|.+.+ +.+.+.+...-..+...|..+
T Consensus 181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~-e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 181 QFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEAL-ERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHH-HHHHHhChHHHHHHHHHHHHH
Confidence 233444455555566666666666666543 111222223445556667777777776 333334333344455667777
Q ss_pred HHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc---CCHHH
Q 041942 314 YAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA---GKVEE 388 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~ 388 (498)
|.+.|+.++....+.++.+ ++...-..+...-......+.|..++.+-+. -+|+...+..++..-... |...+
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~ 336 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKE 336 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhh
Confidence 7777777777777766553 3444555555555555666667666666555 368888888887665432 33455
Q ss_pred HHHHHHHhHH
Q 041942 389 GKKYFKLMRD 398 (498)
Q Consensus 389 a~~~~~~~~~ 398 (498)
-...+..|+.
T Consensus 337 sL~~lr~mvg 346 (389)
T COG2956 337 SLDLLRDMVG 346 (389)
T ss_pred hHHHHHHHHH
Confidence 5555555544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-12 Score=82.90 Aligned_cols=50 Identities=30% Similarity=0.622 Sum_probs=46.3
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhc
Q 041942 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117 (498)
Q Consensus 68 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 117 (498)
||+.+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999998874
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.2e-08 Score=90.09 Aligned_cols=245 Identities=13% Similarity=0.173 Sum_probs=149.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCCCChh-------hHHHHHHHHHhCCChHHHHHHHHHHHhC-----------CC
Q 041942 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVV-------SWNAMISGYVLCGMNKQALEMFEEMRSV-----------GE 264 (498)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----------g~ 264 (498)
..|..+...|-..|+++.|..+|++..+-+-. +|-.....=.++.+++.|+.+++..... +.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 36778888888899999999999888763332 3444444445667778888877765421 11
Q ss_pred CCC------HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC----CC
Q 041942 265 RPD------DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD----RD 334 (498)
Q Consensus 265 ~p~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~ 334 (498)
++. ...|...+..--..|-++....+|+.++.-.-..|-... ...-.+....-++++.+++++-.. |+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII--NYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 222 234444555555667888888888666665554443322 122223345557788888876553 34
Q ss_pred h-hHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhhcCCHHHHHHHHHHhHHh---------
Q 041942 335 V-STWSTLIGGLAF---HGFAEESIAMFREMQRLKVRPTEITFVGVLV--ACSHAGKVEEGKKYFKLMRDE--------- 399 (498)
Q Consensus 335 ~-~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~--------- 399 (498)
+ ..|+..+.-+.+ ....+.|..+|++..+ |.+|...-+-.|+. .--+.|-...|..+++++...
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~m 624 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3 356665554443 2367888888888887 55554322222222 222346666666666665431
Q ss_pred -----------cCCCCChhHHH-----------------------hhCChHHHHHHHHHHHccCCC--CCchHHHHHHHH
Q 041942 400 -----------YNIEPNIRHYG-----------------------VHGDVELGRLANKRLLNMRKD--ESGDYVLLSNIY 443 (498)
Q Consensus 400 -----------~~~~p~~~~y~-----------------------~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~ 443 (498)
+|+..+...|. +.|.+++|+.+|.-..++-++ ++..|.+.-..-
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FE 704 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFE 704 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHH
Confidence 12222211111 889999999999998886554 557899999999
Q ss_pred HhCCCch
Q 041942 444 ASRGEWN 450 (498)
Q Consensus 444 ~~~g~~~ 450 (498)
.++|+-+
T Consensus 705 vrHGned 711 (835)
T KOG2047|consen 705 VRHGNED 711 (835)
T ss_pred HhcCCHH
Confidence 9999833
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-10 Score=98.31 Aligned_cols=223 Identities=14% Similarity=0.114 Sum_probs=188.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHH
Q 041942 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315 (498)
Q Consensus 236 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (498)
-+.+..+|.+.|.+.+|...++...+. .|-+.||..|-.+|.+..+...|..++.+-+... +.++....-+...+.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHH
Confidence 356889999999999999999988877 6677788889999999999999999996655444 345555556777788
Q ss_pred hcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 392 (498)
..++.++|.++++.+.+ .|+....++...|.-.++++-|+.+|+++...|+ -++..|+.+.-+|.-.+++|-+..-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 88999999999998775 3666777788889999999999999999999985 6788899999999999999999999
Q ss_pred HHHhHHhcCCCCC--hhHHH-------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 393 FKLMRDEYNIEPN--IRHYG-------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 393 ~~~~~~~~~~~p~--~~~y~-------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
|++... .-.+|+ .+.|- ..|++.-|.+.|+.++..++++..+++.|+-.-.+.|++++|..+++......
T Consensus 381 f~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999887 455566 23332 78999999999999999999999999999999999999999999999987654
Q ss_pred C
Q 041942 464 I 464 (498)
Q Consensus 464 ~ 464 (498)
.
T Consensus 460 P 460 (478)
T KOG1129|consen 460 P 460 (478)
T ss_pred c
Confidence 3
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-08 Score=93.38 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=95.5
Q ss_pred CHHHHHHHHhcCCCC----ChhHHHHHHHHHHhCCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHhhcCCH
Q 041942 319 SIERAIEVFLGMRDR----DVSTWSTLIGGLAFHGFAEESIAMFR--------EMQRLKVRPTEITFVGVLVACSHAGKV 386 (498)
Q Consensus 319 ~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~ 386 (498)
....|.+++....+. ...+.-.++......|+++.|++++. ...+.+. .+.+...++..+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCC
Confidence 456666666655532 23456667777888999999999998 5555333 345666677777777777
Q ss_pred HHHHHHHHHhHHhcC----CCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH
Q 041942 387 EEGKKYFKLMRDEYN----IEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 387 ~~a~~~~~~~~~~~~----~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
+.|..++.+.+.-.. ..+. +..-.+.|+.++|.+.++++++.+|+|..+...++.+|.+. +++.|+.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 777777766654110 1111 11111789999999999999999999999999999999865 4666766
Q ss_pred HHHHh
Q 041942 455 VRKLM 459 (498)
Q Consensus 455 ~~~~m 459 (498)
+-+.+
T Consensus 513 l~k~L 517 (652)
T KOG2376|consen 513 LSKKL 517 (652)
T ss_pred HhhcC
Confidence 65543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.3e-10 Score=96.99 Aligned_cols=193 Identities=14% Similarity=0.106 Sum_probs=122.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 041942 204 SWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280 (498)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 280 (498)
.+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 344445555555555555555554432 234455666666666777777777776666553 2344555566666667
Q ss_pred cCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHH
Q 041942 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAM 357 (498)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 357 (498)
.|++++|...+++.+...........+..+...+...|++++|...+.+..+ .+...+..+...+...|++++|...
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777755544322223334455566677777777777777766543 2455677777888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 358 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 192 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 192 LERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888775 233456666677777788888888887777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-11 Score=78.35 Aligned_cols=50 Identities=38% Similarity=0.652 Sum_probs=48.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 041942 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280 (498)
Q Consensus 231 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 280 (498)
||+.+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999975
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.2e-09 Score=93.26 Aligned_cols=367 Identities=11% Similarity=0.058 Sum_probs=220.5
Q ss_pred CCChHHHHHhcccCC--CCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHhhcccchhhHHHH
Q 041942 52 PGAINYAHKMFVKIT--EPD-TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKF-TFSFVLKACTRLLYRNMGFCV 127 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~ 127 (498)
.|.+++|.+.+.+.. .|+ ++.|......|...|+++.+.+.-.+.++ +.|+.. .+..-.+++-..|++.+++.=
T Consensus 128 ~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred cccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 799999999999987 777 78888899999999999999988888776 456532 344444455556666665432
Q ss_pred HHHHHH-hCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcc-----------------------hHHHHHHH
Q 041942 128 HGKIVK-YGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVV-----------------------AWSSLTAG 180 (498)
Q Consensus 128 ~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-----------------------~~~~l~~~ 180 (498)
+.-..- .|+. +..+- .++.-..+.--...+.+-+.+-.+ |++. ....+..+
T Consensus 206 ~tv~ci~~~F~-n~s~~-~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~ 283 (606)
T KOG0547|consen 206 VTVLCILEGFQ-NASIE-PMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA 283 (606)
T ss_pred hhHHHHhhhcc-cchhH-HHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence 221111 1111 11100 011111111111122222221111 1111 11111111
Q ss_pred HHh--cC---ChHHHHHHHhcCC-----CC-----Ccc------hHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhH
Q 041942 181 YAR--RG---ELSMARSLFDEMP-----VR-----DLV------SWNVMITGYAKQGEMEKANELFNEVPK--R-DVVSW 236 (498)
Q Consensus 181 ~~~--~~---~~~~A~~~~~~~~-----~~-----~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~ 236 (498)
+.. .+ .+.+|...+.+-. .+ |.. +.......+.-.|+.-.|...|+.... | +...|
T Consensus 284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~ly 363 (606)
T KOG0547|consen 284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLY 363 (606)
T ss_pred HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHH
Confidence 110 11 2333333332221 11 111 111111223456777788888887764 2 33337
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (498)
-.+...|....+.++.+..|.+..... +-++.+|..-.+...-.+++++|..=|++...-. +.++..|..+.-+..+
T Consensus 364 I~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 364 IKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--PENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHH
Confidence 777788889999999999999888765 3456667777777777788888888885554433 2345556666666778
Q ss_pred cCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-------HHHHH--HHHHHHhhcC
Q 041942 317 CGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-------EITFV--GVLVACSHAG 384 (498)
Q Consensus 317 ~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-------~~~~~--~l~~~~~~~g 384 (498)
.+++++++..|++..+ | .+..|+.....+..++++++|.+.|+..++ +.|. ..++. .++. +.=.+
T Consensus 441 ~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~-~qwk~ 517 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLV-LQWKE 517 (606)
T ss_pred HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhh-hchhh
Confidence 8899999999988875 3 567899999999999999999999999887 4444 11111 1111 11237
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hhHHH-------hhCChHHHHHHHHHHHccCCC
Q 041942 385 KVEEGKKYFKLMRDEYNIEPN-IRHYG-------VHGDVELGRLANKRLLNMRKD 431 (498)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~p~-~~~y~-------~~g~~~~a~~~~~~~~~~~~~ 431 (498)
++..|.+++.+..+ +.|. ...|. ..|+.++|..+|++...+-..
T Consensus 518 d~~~a~~Ll~KA~e---~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 518 DINQAENLLRKAIE---LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred hHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 88999999998877 6666 22222 888999999999998865444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-09 Score=95.52 Aligned_cols=196 Identities=13% Similarity=0.116 Sum_probs=117.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.+...+ .+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHH
Confidence 3456666777777777777777777776543 23445556666666777777777777754444332 22334445555
Q ss_pred HHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCH
Q 041942 313 MYAKCGSIERAIEVFLGMRD-----RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKV 386 (498)
Q Consensus 313 ~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~ 386 (498)
.+...|++++|...+++... .....+..+...+...|++++|...+++..+. .| +...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCH
Confidence 56666666666666655432 12234444555555566666666666555552 22 233444444445555555
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 387 EEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
++|...++ ++++..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLE-----------------------------RYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHH-----------------------------HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 55555544 444445666777788889999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-09 Score=105.62 Aligned_cols=269 Identities=14% Similarity=0.151 Sum_probs=152.2
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCC
Q 041942 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD 170 (498)
Q Consensus 91 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (498)
.++-.+...|+.|+..||..+|.-||..|+.+.|- +|.-|.-...+.+..+++.++..+...++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667777888888888888888888888888887 8888887777778888888888888888877765 677
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-C-ChhhHHHHHHHHHhCCC
Q 041942 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK-R-DVVSWNAMISGYVLCGM 248 (498)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~l~~~~~~~g~ 248 (498)
+.+|..|..+|.+.|+... .+..++ ....+...+...|....-..++..+.- | ....-...+......|.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~egl 154 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGL 154 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHH
Confidence 7888888888888887654 111111 112233344444444444444433221 1 11111223333344455
Q ss_pred hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 041942 249 NKQALEMFEEMRSVG-ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (498)
++.+++++..+-... ..|..+ ++.-+.. ...-.+++. .+.+.....++..++.++++.-..+|+.+.|..++
T Consensus 155 waqllkll~~~Pvsa~~~p~~v----fLrqnv~--~ntpvekLl-~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQV----FLRQNVV--DNTPVEKLL-NMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHH----HHHHhcc--CCchHHHHH-HHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 555555554433211 011111 1222211 122233333 23332222456666666666666666666666666
Q ss_pred hcCCCC----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC
Q 041942 328 LGMRDR----DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385 (498)
Q Consensus 328 ~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 385 (498)
.+|.+. +..-|..|+.+ .++..-+..+++-|.+.|+.|+..|+...+..+.+.|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 666643 22233333333 56666666667777777777777777666666655443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-08 Score=94.42 Aligned_cols=60 Identities=8% Similarity=-0.007 Sum_probs=43.5
Q ss_pred CCcChHHHHHHHHhhhhccCCChHHHHHhcccCC--CCChhhHHHHHHHHhccCChHHHHHHHH
Q 041942 33 FNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGSAQSQNPLDAVFLYT 94 (498)
Q Consensus 33 ~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 94 (498)
+.-|+...--+.+ ++.- .|.++.|..+...-. ..|..+.......+.+..++++|+.++.
T Consensus 45 l~~dp~d~~~~aq-~l~~-~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 45 LTNDPADIYWLAQ-VLYL-GRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred ccCChHHHHHHHH-HHHh-hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444555 4444 678888887776554 7788888888888899999999999888
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-08 Score=91.64 Aligned_cols=344 Identities=13% Similarity=0.032 Sum_probs=184.1
Q ss_pred CCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHH
Q 041942 52 PGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVH 128 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 128 (498)
-|+.++|....+... ..+.++|+.+.-.+-...++++|++.|......+ +-|...|.-|.---++.++++......
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 577788887777766 4456678877777777778888888888777653 345556655554455666666666666
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCC-----CCCcchHHHH------HHHHHhcCChHHHHHHHhcC
Q 041942 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA-----KMDVVAWSSL------TAGYARRGELSMARSLFDEM 197 (498)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~ 197 (498)
....+.. +.....|..+..++.-.|+...|..+++... .++...+... .....+.|..++|++-+..-
T Consensus 133 ~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 6665542 2344456666666666677766666654322 1333322221 12334455556665555544
Q ss_pred C--CCCcc-hHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHH-HHHHhCCC-----------------------
Q 041942 198 P--VRDLV-SWNVMITGYAKQGEMEKANELFNEVPK--RDVVSWNAMI-SGYVLCGM----------------------- 248 (498)
Q Consensus 198 ~--~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~-~~~~~~g~----------------------- 248 (498)
. ..|-. .-..-...+.+.+++++|..++..+.. ||...|+... .++..-.+
T Consensus 212 e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 212 EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch
Confidence 3 11111 112234445566666666666665554 3333333222 22211111
Q ss_pred ------------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHH---HHHHHHhhc----------CCcc
Q 041942 249 ------------NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV---HCTLLDMTS----------GVAK 303 (498)
Q Consensus 249 ------------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~---~~~~~~~~~----------~~~~ 303 (498)
.+..-.++..+.+.|+++-- ..+...|-.-...+-..++ +...+...+ .+|.
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pt 368 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPT 368 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCch
Confidence 12222334444455544322 2222222111111111111 111111111 1333
Q ss_pred hhhH--HHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041942 304 VLHG--NALIDMYAKCGSIERAIEVFLGMRDRDVS---TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLV 378 (498)
Q Consensus 304 ~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 378 (498)
...| -.++..|-+.|+++.|...++......+. .|..=.+.+...|+.++|..++++..+.+ .||...-..-..
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAK 447 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAK 447 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHH
Confidence 3333 34566777788888888888777765443 34444567777788888888888877754 355554446666
Q ss_pred HHhhcCCHHHHHHHHHHhHHhcCC
Q 041942 379 ACSHAGKVEEGKKYFKLMRDEYNI 402 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~~~~~ 402 (498)
...++.+.++|.++.....+ .|.
T Consensus 448 YmLrAn~i~eA~~~~skFTr-~~~ 470 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSKFTR-EGF 470 (700)
T ss_pred HHHHccccHHHHHHHHHhhh-ccc
Confidence 67777888888888777766 443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.1e-08 Score=92.70 Aligned_cols=399 Identities=15% Similarity=0.087 Sum_probs=234.9
Q ss_pred hhhccCCChHHHHHhcccCC--CCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHH-HHHHHhhcc----
Q 041942 47 GSVVIPGAINYAHKMFVKIT--EPD-TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFS-FVLKACTRL---- 118 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~---- 118 (498)
++.. .|++++|++.++... -+| ..........+.+.|+.++|..+|..+.+++ |+...|. .+..++...
T Consensus 13 il~e-~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEE-AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHH-CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 4556 899999999998765 344 4455667778889999999999999999874 5555544 444444222
Q ss_pred -cchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhH-HHHhhccCCCCCc-chHHHHHHHHHhcCChHHHHHHHh
Q 041942 119 -LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNT-ASVLFDGDAKMDV-VAWSSLTAGYARRGELSMARSLFD 195 (498)
Q Consensus 119 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~ 195 (498)
.+.+....+++++...- |.......+.-.+..-..+.. +...+..+....+ .+|+.+-..|......+-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 24667778888776653 333333222222222222332 3333344444433 456666666665544444444444
Q ss_pred cCC------------------CCCcc--hHHHHHHHHHhcCChHHHHHHHhhCCC--CC-hhhHHHHHHHHHhCCChHHH
Q 041942 196 EMP------------------VRDLV--SWNVMITGYAKQGEMEKANELFNEVPK--RD-VVSWNAMISGYVLCGMNKQA 252 (498)
Q Consensus 196 ~~~------------------~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a 252 (498)
... +|+.. ++..+...|...|++++|.+++++..+ |+ +..|..-...+-+.|++.+|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 432 12222 345556777888888888888887765 33 44677778888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhh--------HHHHHHHHHhcCCHHHHH
Q 041942 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH--------GNALIDMYAKCGSIERAI 324 (498)
Q Consensus 253 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~A~ 324 (498)
.+.++..+... .-|...=+-....+.+.|++++|..++ ......+..|.... ......+|.+.|++..|+
T Consensus 248 a~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~-~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 248 AEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTA-SLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHH-HhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88888888765 346666666777778888888888888 55555443332211 134566778888888888
Q ss_pred HHHhcCCCC---------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCC---------
Q 041942 325 EVFLGMRDR---------DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGK--------- 385 (498)
Q Consensus 325 ~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~--------- 385 (498)
..|..+.+. |-.+| |.+.+-+..-+++++.--...-.|- ..+...+++.|.+.-+
T Consensus 326 k~~~~v~k~f~~~~~DQfDFH~Y------c~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~ 399 (517)
T PF12569_consen 326 KRFHAVLKHFDDFEEDQFDFHSY------CLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEE 399 (517)
T ss_pred HHHHHHHHHHHHHhcccccHHHH------HHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 776665431 33333 4455544433333332222111221 2233334444432110
Q ss_pred ---------HHHHHHHHHHhHH----------h------------------------cCCCCChhHHHhhC-ChHHHHHH
Q 041942 386 ---------VEEGKKYFKLMRD----------E------------------------YNIEPNIRHYGVHG-DVELGRLA 421 (498)
Q Consensus 386 ---------~~~a~~~~~~~~~----------~------------------------~~~~p~~~~y~~~g-~~~~a~~~ 421 (498)
..+..+.-++.++ . ..-.|......+.. =+++|.+.
T Consensus 400 ~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~~t~dPLe~A~kf 479 (517)
T PF12569_consen 400 QEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLLKTEDPLEEAMKF 479 (517)
T ss_pred cccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHHhcCCcHHHHHHHH
Confidence 0111111111110 0 00011122232333 46788899
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHH
Q 041942 422 NKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
++.+.+..|++..+|..-...|.+.|++--|++.+.+
T Consensus 480 l~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 480 LKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 9999999999999999999999999999888887664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-09 Score=100.35 Aligned_cols=236 Identities=17% Similarity=0.206 Sum_probs=149.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCC----------CChh-hHHHHHHHHHhCCChHHHHHHHHHHHhC-----CC-C
Q 041942 203 VSWNVMITGYAKQGEMEKANELFNEVPK----------RDVV-SWNAMISGYVLCGMNKQALEMFEEMRSV-----GE-R 265 (498)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----g~-~ 265 (498)
.+...+...|...|+++.|+.+++...+ +.+. ..+.+...|...+++.+|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4555577788888888888888776653 1222 2334667788888888888888887632 21 2
Q ss_pred C-CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcC-----Ccc-hhhHHHHHHHHHhcCCHHHHHHHHhcCCC------
Q 041942 266 P-DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG-----VAK-VLHGNALIDMYAKCGSIERAIEVFLGMRD------ 332 (498)
Q Consensus 266 p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------ 332 (498)
| -..+++.|..+|.+.|++++|...++..+.-... .+. ...++.+...++..+++++|..+++...+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 2345666777788888888887777554432211 111 12234455566667777777766654321
Q ss_pred -C-C---hhHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc
Q 041942 333 -R-D---VSTWSTLIGGLAFHGFAEESIAMFREMQRL----KV--RPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400 (498)
Q Consensus 333 -~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 400 (498)
+ + ..+++.|...|...|++++|.+++++.+.. +- .+. ...++.+...|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~-- 437 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD-- 437 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH--
Confidence 1 2 246777777777777777777777776542 11 222 34566666777777777777777766544
Q ss_pred CCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 401 NIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 401 ~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
+....-.-.|+-..+|..|+.+|...|++++|+++.+...
T Consensus 438 --------------------i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 --------------------IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred --------------------HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1111111123444689999999999999999999988775
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.8e-07 Score=85.13 Aligned_cols=399 Identities=15% Similarity=0.160 Sum_probs=211.7
Q ss_pred CCChHHHHHhcccCC-----CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHH
Q 041942 52 PGAINYAHKMFVKIT-----EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFC 126 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 126 (498)
+|++-.....|++.. ......|...+......|-++-++.+|++.++ +.| ..-.--|..++..+++++|.+
T Consensus 115 Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P--~~~eeyie~L~~~d~~~eaa~ 190 (835)
T KOG2047|consen 115 QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAP--EAREEYIEYLAKSDRLDEAAQ 190 (835)
T ss_pred cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCH--HHHHHHHHHHHhccchHHHHH
Confidence 555555555554443 12233455555555556666666666666654 222 224444555566666666666
Q ss_pred HHHHHHHhC------CCCChHHHHHHHHHHHhcCC---hhHHHHhhccCCCC--Cc--chHHHHHHHHHhcCChHHHHHH
Q 041942 127 VHGKIVKYG------FEFNRFVRNSLIYFHANCGD---LNTASVLFDGDAKM--DV--VAWSSLTAGYARRGELSMARSL 193 (498)
Q Consensus 127 ~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~--~~--~~~~~l~~~~~~~~~~~~A~~~ 193 (498)
.+...+... -+.+...|..+.+..++.-+ --...++++.+... |. ..|.+|...|.+.|.+++|..+
T Consensus 191 ~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDv 270 (835)
T KOG2047|consen 191 RLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDV 270 (835)
T ss_pred HHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 665554211 13344455544444444322 12233344444432 22 3477777788888888888888
Q ss_pred HhcCC--CCCcchHHHHHHHHHhcCC----------------------hHHHHHHHhhCCC---------------CChh
Q 041942 194 FDEMP--VRDLVSWNVMITGYAKQGE----------------------MEKANELFNEVPK---------------RDVV 234 (498)
Q Consensus 194 ~~~~~--~~~~~~~~~l~~~~~~~~~----------------------~~~A~~~~~~~~~---------------~~~~ 234 (498)
|++.. ..++..|..+.++|+.-.. ++-...-|+.+.. .++.
T Consensus 271 yeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~ 350 (835)
T KOG2047|consen 271 YEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVE 350 (835)
T ss_pred HHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHH
Confidence 87765 3344444444444432211 1222222222221 1222
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc---hh
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPD------DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK---VL 305 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 305 (498)
.|..-+.. ..|+..+....|.+.++. +.|. ...|..+...|-..|+++.|+.+|++..+ .+.+.- ..
T Consensus 351 eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~-V~y~~v~dLa~ 426 (835)
T KOG2047|consen 351 EWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK-VPYKTVEDLAE 426 (835)
T ss_pred HHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc-CCccchHHHHH
Confidence 33322222 235566666666666543 1221 23466667777778888888888844332 221111 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC-C--------------------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMRD-R--------------------DVSTWSTLIGGLAFHGFAEESIAMFREMQRL 364 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 364 (498)
+|..-..+-.+..+++.|.++.+.... | +...|...+..-...|-++....+|+++++.
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444444555566777777777766541 1 3346666777666777777777888888775
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCCh-h---HHH-------hhCChHHHHHHHHHHHccCCCCC
Q 041942 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI-R---HYG-------VHGDVELGRLANKRLLNMRKDES 433 (498)
Q Consensus 365 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~---~y~-------~~g~~~~a~~~~~~~~~~~~~~~ 433 (498)
.+.- +.+......-+-...-++++.+++++-+.. ---|.+ + +|. ....++.|+.+|+++++.-|+..
T Consensus 507 riaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~L-Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~ 584 (835)
T KOG2047|consen 507 RIAT-PQIIINYAMFLEEHKYFEESFKAYERGISL-FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEH 584 (835)
T ss_pred hcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCcc-CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Confidence 4422 222222222233444567777777766552 222331 1 111 23367888888888888776532
Q ss_pred --chHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 434 --GDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 434 --~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
..|..++..-.+.|....|+.+|++..
T Consensus 585 aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 585 AKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 355566666666788888888888753
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-07 Score=89.57 Aligned_cols=122 Identities=13% Similarity=0.194 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hh
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IR 407 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~ 407 (498)
.|......+...+..++|...+.+... +.| ....|......+...|++++|.+.|..... +.|+ ..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHH
Confidence 566777888889999999988888877 444 456666666778888999999999988866 7777 55
Q ss_pred HHHhhCChHHHHH--HHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 408 HYGVHGDVELGRL--ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 408 ~y~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.+.+.|+..-|.. ++..+++++|.++.+|..++..+-..|+.++|-+.|+-..+..
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 6668887777776 9999999999999999999999999999999999999987654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-09 Score=104.32 Aligned_cols=238 Identities=13% Similarity=0.053 Sum_probs=140.3
Q ss_pred ChHHHHHHHhhCCC--C-ChhhHHHHHHHHH---------hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc
Q 041942 217 EMEKANELFNEVPK--R-DVVSWNAMISGYV---------LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284 (498)
Q Consensus 217 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~---------~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 284 (498)
.+++|...|++..+ | +...|..+..++. ..+++++|...+++..+.. +-+...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 35667777776654 2 2234444443332 2234677777777777654 33555666666666777777
Q ss_pred hHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 285 EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RD-VSTWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
++|...|++.+...+ .+...+..+...+...|++++|...+++..+ |+ ...+..++..+...|++++|...++++
T Consensus 355 ~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLSP--ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 777777755555442 2344455666777777777777777776653 32 223333444455567777777777777
Q ss_pred HHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCC
Q 041942 362 QRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDE 432 (498)
Q Consensus 362 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~ 432 (498)
.+.. .|+ ...+..+..++...|+.++|...+.++.. ..|+ ...|...| ++|...++++++.....
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 6532 243 44455566667777777777777777654 3333 11222333 46666666665433332
Q ss_pred CchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+.....+...|.-.|+.+.+... +++.+.|.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 22233366667777887777777 88877665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-08 Score=94.25 Aligned_cols=265 Identities=14% Similarity=0.063 Sum_probs=182.6
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHH
Q 041942 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM---DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVM 208 (498)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 208 (498)
+..-+..+......-+...+++.+..++++...+. ....+..-|.++...|+..+-..+=.++. |..+.+|-++
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 34556666777777788888888888888776653 33345555667777777666666666665 5556788888
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCch
Q 041942 209 ITGYAKQGEMEKANELFNEVPKRD---VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285 (498)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 285 (498)
.--|.-.|+..+|.+.|.+...-| ...|-.....|.-.|..++|+..|...-+.= +-...-+.-+.--|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 888888888888888887766432 3577778888888888888888776655431 111111223344566778888
Q ss_pred HHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC----------ChhHHHHHHHHHHhCCCHHHHH
Q 041942 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR----------DVSTWSTLIGGLAFHGFAEESI 355 (498)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~ 355 (498)
.|.++|.+.+... +.|+.+.+-+.......+.+.+|..+|+....+ ...+++.|..+|.+.+.+++|+
T Consensus 398 LAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 8888885554333 355666666766667777888888887765421 2345777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCCh
Q 041942 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI 406 (498)
Q Consensus 356 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 406 (498)
..+++.+... +-+..++.++.-.+...|+++.|.+.|.+... +.|+-
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~---l~p~n 522 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA---LKPDN 522 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh---cCCcc
Confidence 8888887742 34677888888888888888888888887744 77773
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-06 Score=83.15 Aligned_cols=414 Identities=12% Similarity=0.033 Sum_probs=268.6
Q ss_pred HHHHHHHHhhhhccCCChHHHHHhcccCC--CC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 041942 38 SALRELIYSGSVVIPGAINYAHKMFVKIT--EP-DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114 (498)
Q Consensus 38 ~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 114 (498)
..|..++. .|. .+.+..-+++.+.+. .| ...+.....-.+...|+-++|......-.... .-+...|+.+.-.
T Consensus 9 ~lF~~~lk-~yE--~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 9 ALFRRALK-CYE--TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHH-HHH--HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHH
Confidence 44555565 555 255554444444443 11 22233333334567899999999888877643 3355667777666
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHH
Q 041942 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMAR 191 (498)
Q Consensus 115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 191 (498)
+-...++++|.+.|..+.+.+ +.|...+..+.-.-...|+++.....-....+ .....|...+.+..-.|++..|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666789999999999999876 55788888887777888888887776665444 35567888888999999999999
Q ss_pred HHHhcCC-----CCCcchHHHH------HHHHHhcCChHHHHHHHhhCCCC--C-hhhHHHHHHHHHhCCChHHHHHHHH
Q 041942 192 SLFDEMP-----VRDLVSWNVM------ITGYAKQGEMEKANELFNEVPKR--D-VVSWNAMISGYVLCGMNKQALEMFE 257 (498)
Q Consensus 192 ~~~~~~~-----~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~ 257 (498)
.+++... .|+...|... .....+.|..++|.+.+...... | ...-......+.+.+++++|..++.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 9998876 3555555443 33456788889998888776642 2 2233455677889999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHh--ccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHH-HHHhcCCCC-
Q 041942 258 EMRSVGERPDDVTMLSLLTACA--DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI-EVFLGMRDR- 333 (498)
Q Consensus 258 ~m~~~g~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~- 333 (498)
.++.. .||...|...+..+. -.+..+....+| ......-. ....-..+--......++.+.. .++..+.+.
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly-~~ls~~y~--r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALY-AILSEKYP--RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHH-HHHhhcCc--ccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 99987 677777666555444 333344444666 33332211 1111111111111222233322 333333332
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHH----CC----------CCCCHHHH--HHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQR----LK----------VRPTEITF--VGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~----------~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
-+.++..+...|-.-...+-..++...+.. .| -+|....| ..+...+-+.|+++.|..+++..+
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 345556666655443332222222222211 11 14454444 345678889999999999999986
Q ss_pred HhcCCCCC-hhHH-------HhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 398 DEYNIEPN-IRHY-------GVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 398 ~~~~~~p~-~~~y-------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
. -.|+ ++.| ...|++++|-..++++.+++-.|..+-..-+.-..++++.++|.++.....+.|.
T Consensus 399 d---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 399 D---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred c---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 6 6777 3333 4788999999999999999998887777888889999999999999999988876
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.8e-09 Score=93.89 Aligned_cols=210 Identities=13% Similarity=0.066 Sum_probs=115.3
Q ss_pred ChHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHH
Q 041942 248 MNKQALEMFEEMRSVG-ERPD--DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324 (498)
Q Consensus 248 ~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (498)
..+.++.-+.+++... ..|+ ...|..+...+...|+.+.|...|++.+...+ .+...|+.+...+...|++++|.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP--DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHCCCHHHHH
Confidence 3444555555555321 1111 23344445555666666666666644444332 33455556666666666666666
Q ss_pred HHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcC
Q 041942 325 EVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401 (498)
Q Consensus 325 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 401 (498)
..|++..+ | +..+|..+..++...|++++|++.+++..+ ..|+..........+...++.++|...+.+... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 66665543 2 345566666666667777777777777666 334432212222223345567777777755443 1
Q ss_pred CCCCh----hHHHhhCChHHHHHHHHHHH-------ccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 402 IEPNI----RHYGVHGDVELGRLANKRLL-------NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 402 ~~p~~----~~y~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
..|+. ..+...|+...+ ..++.+. ++.|..+.+|..++..+.+.|++++|+..|++..+.++
T Consensus 195 ~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 22321 111234444332 2333332 34455667888888888888888888888888887665
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-08 Score=100.05 Aligned_cols=203 Identities=15% Similarity=0.033 Sum_probs=102.7
Q ss_pred hhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCC
Q 041942 156 LNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVP 229 (498)
Q Consensus 156 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 229 (498)
+++|...+++..+ .+...+..+...+...|++++|...|++.. +.+...+..+..++...|++++|...+++..
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL 399 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555554332 234445555555566666666666666655 3334455556666666666666666666655
Q ss_pred C--CCh-hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhh
Q 041942 230 K--RDV-VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306 (498)
Q Consensus 230 ~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (498)
+ |+. ..+..++..+...|++++|...+++......+-+...+..+..++...|+.++|...+.+.....+ .+...
T Consensus 400 ~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~--~~~~~ 477 (553)
T PRK12370 400 KLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI--TGLIA 477 (553)
T ss_pred hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc--hhHHH
Confidence 3 221 122233334445666666776666665443121333445555556666777777766644322211 12223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 041942 307 GNALIDMYAKCGSIERAIEVFLGMRD-----RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK 365 (498)
Q Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 365 (498)
.+.+...|...| ++|...++.+.+ +....+ +-..|.-.|+.+.+..+ +++.+.|
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 344444555555 355555544432 111122 33334445555555554 6666543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-08 Score=93.19 Aligned_cols=231 Identities=19% Similarity=0.216 Sum_probs=134.3
Q ss_pred HHHHHHHHHHhcCChhHHHHhhccCC----------CCCcch-HHHHHHHHHhcCChHHHHHHHhcCC-------CCC--
Q 041942 142 VRNSLIYFHANCGDLNTASVLFDGDA----------KMDVVA-WSSLTAGYARRGELSMARSLFDEMP-------VRD-- 201 (498)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~-- 201 (498)
+...+...|...|+++.|..+++... .+...+ .+.+...|...+++++|..+|+++. -++
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 33445555555555555555554211 112221 2345566777788888877776654 011
Q ss_pred --cchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CCH-HHHHHHHHH
Q 041942 202 --LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PDD-VTMLSLLTA 277 (498)
Q Consensus 202 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~-~~~~~li~~ 277 (498)
..+++.|..+|.+.|++++|...+++.. ++++. ..|.. |.. ..++.+...
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al------------------------~I~~~--~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERAL------------------------EIYEK--LLGASHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHH------------------------HHHHH--hhccChHHHHHHHHHHHHH
Confidence 1234444445555555555544443322 11111 01111 111 123444445
Q ss_pred HhccCCchHHHHHHHHHHHhhc--CC----cchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------ChhHHHH
Q 041942 278 CADLGDLEVGKKVHCTLLDMTS--GV----AKVLHGNALIDMYAKCGSIERAIEVFLGMRDR-----------DVSTWST 340 (498)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~ 340 (498)
|+..+++++|..+++..++... +. .-..+++.|...|.+.|++.+|+++++++.+. ....++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 5556666666665544433222 11 12456677888888888888888888776531 1346788
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQR----LKV-RPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~----~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
|...|.+.+++.+|.++|.+... .|. .|+ ..+|..|...|.+.|+++.|.++.+.+..
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 88899999999999988887543 232 233 57899999999999999999999988764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.8e-07 Score=79.35 Aligned_cols=257 Identities=11% Similarity=-0.034 Sum_probs=123.4
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhh---HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041942 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVS---WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275 (498)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 275 (498)
+.|......+..++...|+.++|...|++...-|+.+ .......+.+.|+.++...+...+.... .-+...|..-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 4455566666666666666666666666655433322 2222333445566666555555554221 11111222222
Q ss_pred HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC--CC-ChhHHHHHHHHHHhCCCHH
Q 041942 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR--DR-DVSTWSTLIGGLAFHGFAE 352 (498)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~ 352 (498)
.......+++.|..+-++.+.... .+...+-.-...+...++.++|.-.|+... .| +..+|.-|+.+|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~--r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEP--RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCc--ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 233344555555555433332221 112222112233445566666666665443 22 5566666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-hcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHH
Q 041942 353 ESIAMFREMQRLKVRPTEITFVGVL-VACS-HAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLAN 422 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~ 422 (498)
+|..+-+...+. +..+..+...+. ..|. ...--++|..++++..+ ++|+ ++.....|..+++..++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 666555544432 223334433331 1111 12223455555555533 4555 22233556666666666
Q ss_pred HHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 423 KRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
++.+...|+ ....+.|++.+.-.+.+.+|++.|......+
T Consensus 462 e~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 462 EKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 666654443 3445566666666666666666555554433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.5e-07 Score=79.85 Aligned_cols=80 Identities=10% Similarity=0.087 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhH-------HHhhCChHHHHHHH
Q 041942 351 AEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRH-------YGVHGDVELGRLAN 422 (498)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------y~~~g~~~~a~~~~ 422 (498)
-++|.+++++..+ +.|+ ....+.+...|...|....++.+++.... ..||... +.....+++|...|
T Consensus 420 rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 420 REKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4667777777666 5666 45666666777777778778877777755 5666333 33455667777778
Q ss_pred HHHHccCCCCCch
Q 041942 423 KRLLNMRKDESGD 435 (498)
Q Consensus 423 ~~~~~~~~~~~~~ 435 (498)
..++.++|.+..+
T Consensus 495 ~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 495 YKALRQDPKSKRT 507 (564)
T ss_pred HHHHhcCccchHH
Confidence 8888888887443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-09 Score=91.22 Aligned_cols=224 Identities=10% Similarity=0.038 Sum_probs=137.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhH-HHHHHHHHhCCCh
Q 041942 175 SSLTAGYARRGELSMARSLFDEMP--VRDLVSWNVMITGYAKQGEMEKANELFNEVPK--RDVVSW-NAMISGYVLCGMN 249 (498)
Q Consensus 175 ~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~g~~ 249 (498)
+.+..+|.+.|.+.+|.+.|.... .|-+.||..|-.+|.+..+...|+.++.+..+ |..+|| .-+...+-..++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 445666666666666666666554 55556666666666666666666666666554 333332 3344555556666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhc
Q 041942 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG 329 (498)
Q Consensus 250 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (498)
++|.++|+...+.. +.+......+...|.-.++.+-|.++|+..+ +-|. .++..|..+.-+|.-.++++-++.-|++
T Consensus 307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 66666666666543 3344444455555666666666666663333 3332 3445555666666666666666666654
Q ss_pred CC----CCC--hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCC
Q 041942 330 MR----DRD--VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIE 403 (498)
Q Consensus 330 ~~----~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 403 (498)
.. +++ ...|..+.......|++..|.+.|+-....+ ......++.|.-.-.+.|++++|..+++.... +.
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s---~~ 459 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS---VM 459 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh---hC
Confidence 43 232 3467777777777788888888877776643 22356777777777778888888888877755 55
Q ss_pred CC
Q 041942 404 PN 405 (498)
Q Consensus 404 p~ 405 (498)
|+
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 55
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-07 Score=79.83 Aligned_cols=374 Identities=10% Similarity=0.006 Sum_probs=200.8
Q ss_pred CCChHHHHHhcccCCCC---Ch-hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHH
Q 041942 52 PGAINYAHKMFVKITEP---DT-FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~~~---~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 127 (498)
..++..|..+++.-... .. .+--.+...+.+.|++++|+..|+.+.+.. .|+...+..|.-+..-.|.+.+|..+
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHH
Confidence 56777777777655411 11 111123344566788888888888776643 55666666665555556666666554
Q ss_pred HHHHHH--------------hC-----------CCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCc--chHHH-HHH
Q 041942 128 HGKIVK--------------YG-----------FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDV--VAWSS-LTA 179 (498)
Q Consensus 128 ~~~~~~--------------~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~-l~~ 179 (498)
-....+ .+ +.....--.+|.++..-.-.+++|.+++.++...+. ...|. +.-
T Consensus 114 ~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~AL 193 (557)
T KOG3785|consen 114 AEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMAL 193 (557)
T ss_pred HhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHH
Confidence 433211 11 011111222344444444557777777777665333 23333 334
Q ss_pred HHHhcCChHHHHHHHhcCC--CCCc-chHHHHHHHHHhc--CCh---------------------------------HHH
Q 041942 180 GYARRGELSMARSLFDEMP--VRDL-VSWNVMITGYAKQ--GEM---------------------------------EKA 221 (498)
Q Consensus 180 ~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~--~~~---------------------------------~~A 221 (498)
+|.+..-++-+.+++.... .||+ ...|..+....+. |+. +.|
T Consensus 194 CyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgA 273 (557)
T KOG3785|consen 194 CYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGA 273 (557)
T ss_pred HHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccH
Confidence 5666676776666666554 3333 3333332222221 111 112
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HhccCCchHHHHHHHHHHH
Q 041942 222 NELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA-----CADLGDLEVGKKVHCTLLD 296 (498)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-----~~~~~~~~~a~~~~~~~~~ 296 (498)
.+++-.+.+.=+.+.-.|+--|.+.+++++|..+.+++... .|-......+..+ ........-|.+.| ++..
T Consensus 274 LqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqff-qlVG 350 (557)
T KOG3785|consen 274 LQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFF-QLVG 350 (557)
T ss_pred HHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH-HHhc
Confidence 22211111111223334555677889999999888877522 3333333333322 22223456677777 6665
Q ss_pred hhcCCcchh-hHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 041942 297 MTSGVAKVL-HGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEIT 372 (498)
Q Consensus 297 ~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 372 (498)
..+...|.. --.++...+.-..++++++.++..+.. .|-..--.+..+++..|++.+|.++|-+.....++ |..+
T Consensus 351 ~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~ 429 (557)
T KOG3785|consen 351 ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKIL 429 (557)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHH
Confidence 555444322 224566666667788888888887764 23233334778888899999999999877664443 4455
Q ss_pred HH-HHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCC
Q 041942 373 FV-GVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKD 431 (498)
Q Consensus 373 ~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~ 431 (498)
|. .|.++|.+.++++.|..++-++.. .+..-. +...-+++.+=-|-+.|+.+-.++|.
T Consensus 430 Y~s~LArCyi~nkkP~lAW~~~lk~~t-~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 430 YKSMLARCYIRNKKPQLAWDMMLKTNT-PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 54 455888999999888877654422 000000 11111566666666666666656654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-07 Score=86.50 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=76.7
Q ss_pred CCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHhhcccchhhHHHH
Q 041942 52 PGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN-KFTFSFVLKACTRLLYRNMGFCV 127 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~ 127 (498)
.|+++.|...|-... ++|.+.|..=..+|+..|++.+|++=-.+-++ +.|+ ...|+-.-.++.-.|++++|..-
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 789999999987765 66788888888899999999998887777766 4554 55788888888888999999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHH
Q 041942 128 HGKIVKYGFEFNRFVRNSLIYFH 150 (498)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~ 150 (498)
|.+-++.. +.+...++.+..++
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhh
Confidence 98888764 44666777777777
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-06 Score=76.70 Aligned_cols=372 Identities=10% Similarity=0.001 Sum_probs=206.8
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCh
Q 041942 77 IRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156 (498)
Q Consensus 77 l~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 156 (498)
+.-+....++..|+.+++.-...+-.-...+-.-+..++.+.|++++|...+..+.... .++...+..|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 45567788999999999877654322222222334455678899999999999888754 66777777788888888999
Q ss_pred hHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CChh
Q 041942 157 NTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK--RDVV 234 (498)
Q Consensus 157 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~ 234 (498)
.+|..+-.+..+ ++..-..|+....+.++-++-..+-+.+.. ....-.+|.......-.+++|.+++.++.. |+..
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 999988776543 333344555556666666665555554431 112233444445555567888888888765 3334
Q ss_pred hHHHHH-HHHHhCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcc--CC---------------------------
Q 041942 235 SWNAMI-SGYVLCGMNKQALEMFEEMRSVGERPD-DVTMLSLLTACADL--GD--------------------------- 283 (498)
Q Consensus 235 ~~~~l~-~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~--~~--------------------------- 283 (498)
..|..+ -+|.+..-++-+.++++--.+. -|| ....+.......+. |+
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHN 263 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHN 263 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcC
Confidence 444433 4455666666666666655543 233 22222222222111 11
Q ss_pred ------chHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCC-------C
Q 041942 284 ------LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG-------F 350 (498)
Q Consensus 284 ------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-------~ 350 (498)
-+.|.+++-.++. +.|... -.|+-.|.+.+++++|..+.+.+....+.-|-.-.-.++..| .
T Consensus 264 LVvFrngEgALqVLP~L~~---~IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMK---HIPEAR--LNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred eEEEeCCccHHHhchHHHh---hChHhh--hhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 1222222211111 112222 245566888999999999998887544433322222222222 3
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC------hhHHHhhCChHHHHHHHH
Q 041942 351 AEESIAMFREMQRLKVRPTE-ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN------IRHYGVHGDVELGRLANK 423 (498)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~y~~~g~~~~a~~~~~ 423 (498)
..-|.+.|+-.-+.+..-|. .--.++..++.-..++++..-.+..+.. .-.+-| +..+...|++.+|+++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 44455555544444333221 1112223333344456666666666665 333333 334446677777777776
Q ss_pred HHHccCCCCCc-hHHHHHHHHHhCCCchHHHHHHHHh
Q 041942 424 RLLNMRKDESG-DYVLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 424 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
++...+-.|.. ....|+++|.+.|+++-|.+++-++
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 66554433333 3345566677777776666655444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-07 Score=90.91 Aligned_cols=250 Identities=15% Similarity=0.093 Sum_probs=166.2
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--CC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh------
Q 041942 209 ITGYAKQGEMEKANELFNEVPK--RD-VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA------ 279 (498)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~------ 279 (498)
...+...|++++|++.++.-.. .| ..........+.+.|+.++|..+|..+++. .|+...|...+..+.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 3455677888888888877554 23 345666778888889999999999888877 455555554444443
Q ss_pred ccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHH-HHHHHHhcCCCCC-hhHHHHHHHHHHhCCCHHHHHHH
Q 041942 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE-RAIEVFLGMRDRD-VSTWSTLIGGLAFHGFAEESIAM 357 (498)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~ 357 (498)
...+.+....+|++..... |.......+.-.+.....+. .+..++..+..+. +.+|+.+-..|....+..-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 1224566777775444433 22222122222222212222 2334444444444 35666666667656555555666
Q ss_pred HHHHHHC----C----------CCCCHH--HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhH-------HHhhC
Q 041942 358 FREMQRL----K----------VRPTEI--TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRH-------YGVHG 413 (498)
Q Consensus 358 ~~~m~~~----~----------~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~-------y~~~g 413 (498)
+...... + -.|+.. ++..+...|...|++++|.+++++.++ .+|+ ++. |...|
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCC
Confidence 6655432 1 123333 334556778899999999999999988 5676 333 33899
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCcc
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 466 (498)
++++|...++.+.++++.|..+-+..+..+.+.|+.++|.+++....+.+..|
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 99999999999999999999999999999999999999999999998877644
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.5e-07 Score=81.93 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=75.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHHH-------hhC
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHYG-------VHG 413 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~-------~~g 413 (498)
...+.+.|++..|+..|.++++.. +-|...|....-+|.+.|.+..|.+-.+..++ +.|+ ...|. ...
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie---L~p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE---LDPNFIKAYLRKGAALRAMK 440 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHH
Confidence 456677888888888888888854 33577888888888888888888888777777 4666 33444 455
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhC
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (498)
++++|...|+++++.+|++..+...+.+++...
T Consensus 441 ~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 441 EYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 778888888888888888877777777666643
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.4e-07 Score=78.95 Aligned_cols=302 Identities=15% Similarity=0.112 Sum_probs=181.3
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHH---HHHhcCChHHHHHHHhcCC--CCCcch-HHHHHHHH
Q 041942 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA---GYARRGELSMARSLFDEMP--VRDLVS-WNVMITGY 212 (498)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~~~--~~~~~~-~~~l~~~~ 212 (498)
+..-..-+.+.+...|++..|+..|...++.|+..|.++.+ .|...|+-..|+.-+.+.. +||-.. -..-...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 34444567777788888888888888888877777776643 5666777777776666665 444321 11123456
Q ss_pred HhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHH
Q 041942 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292 (498)
Q Consensus 213 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 292 (498)
.+.|.++.|..-|+.+.+.++. .|...+|.+-+..+. ........+..+...|+...|+....
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 6777777777777776643221 000111110000000 00111222334455666666766665
Q ss_pred HHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhc---CCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 041942 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLG---MRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369 (498)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 369 (498)
.+++-. +.+...+..-..+|...|++..|+.-++. +...+..++--+-..+...|+.+.++.-.++..+ +.||
T Consensus 180 ~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpd 255 (504)
T KOG0624|consen 180 HLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPD 255 (504)
T ss_pred HHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcc
Confidence 555443 34555666666777777777777655443 3344556666666666777777777777777766 4565
Q ss_pred HHH----HHHH---H------HHHhhcCCHHHHHHHHHHhHHhcCCCCC------------hhHHHhhCChHHHHHHHHH
Q 041942 370 EIT----FVGV---L------VACSHAGKVEEGKKYFKLMRDEYNIEPN------------IRHYGVHGDVELGRLANKR 424 (498)
Q Consensus 370 ~~~----~~~l---~------~~~~~~g~~~~a~~~~~~~~~~~~~~p~------------~~~y~~~g~~~~a~~~~~~ 424 (498)
... |..| . ......++|.++.+.-+...+ ..|. -..|..-|++.+|.+...+
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 321 1111 1 223455667777777666655 3444 1223366788888888888
Q ss_pred HHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 425 LLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+++.+|+|..++-.-+.+|.-...+++|+.-|++..+.+.
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 8888888888888888888888888888888888766543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-07 Score=77.97 Aligned_cols=193 Identities=12% Similarity=0.008 Sum_probs=123.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 041942 205 WNVMITGYAKQGEMEKANELFNEVPKR---DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281 (498)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 281 (498)
...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 334455566666666666666666542 23356666666677777777777776666543 22344555556666666
Q ss_pred CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHH
Q 041942 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMF 358 (498)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~ 358 (498)
|++++|...|+..+..........+|..+.-+..+.|+.+.|...|++..+. ...+.-.+.......|++-.|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 6777777777555555544444556666666666677777777777665532 3445666667777777777887777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 359 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
++....+. ++.......|+.-...|+.+.+.++=.++.+.
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77766654 77777777777777777777777776666663
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-07 Score=77.83 Aligned_cols=182 Identities=11% Similarity=-0.019 Sum_probs=137.0
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhcc---CCCCCcchHHHHHHHHHhc
Q 041942 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG---DAKMDVVAWSSLTAGYARR 184 (498)
Q Consensus 108 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~ 184 (498)
...|.-.|.+.|+...|..-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++ +.+.+..+.|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3344455666777777777777777664 33555677777777777777777777764 3335666777777778888
Q ss_pred CChHHHHHHHhcCC-CC----CcchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHH
Q 041942 185 GELSMARSLFDEMP-VR----DLVSWNVMITGYAKQGEMEKANELFNEVPKR---DVVSWNAMISGYVLCGMNKQALEMF 256 (498)
Q Consensus 185 ~~~~~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~ 256 (498)
|++++|...|++.. .| -..+|..+.-+..+.|+.+.|.+.|++..+. ...+.-.+.......|++-.|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 88888888888777 33 3467888888888999999999999887752 3456777888888999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 257 EEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 257 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
+.....+. ++..++...|..--..|+.+.+.++=
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 98887775 88888888888888889988888775
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-08 Score=89.08 Aligned_cols=243 Identities=13% Similarity=0.066 Sum_probs=125.9
Q ss_pred HHhcCChHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 041942 181 YARRGELSMARSLFDEMPV----RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMF 256 (498)
Q Consensus 181 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 256 (498)
+.-.|++..++.-.+ ... .+......+.+++...|+.+.+..-...-..|.......+...+...++-+.+..-+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l 89 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEEL 89 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHH
Confidence 344566666654443 111 112233445566667776665555444444455555544444443334444555555
Q ss_pred HHHHhCCCCCCH-HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCC-
Q 041942 257 EEMRSVGERPDD-VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRD- 334 (498)
Q Consensus 257 ~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 334 (498)
++....+..++. .........+...|+++.|.+++. .+ .+.......+..|.+.++++.|.+.++.|.+-+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~-----~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e 162 (290)
T PF04733_consen 90 KELLADQAGESNEIVQLLAATILFHEGDYEEALKLLH-----KG--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE 162 (290)
T ss_dssp HHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCT-----TT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred HHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHH-----cc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 444433322222 222222344556677777776651 11 234444556677777777777777777766432
Q ss_pred hhHHHHHHH----HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 041942 335 VSTWSTLIG----GLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410 (498)
Q Consensus 335 ~~~~~~l~~----~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~ 410 (498)
-.+...+.. .+...+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+...
T Consensus 163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~------------ 229 (290)
T PF04733_consen 163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE------------ 229 (290)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC------------
T ss_pred cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------
Confidence 122222332 232334677777777776553 456677777777777777777777776666533
Q ss_pred hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCc-hHHHHHHHHhhh
Q 041942 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW-NRVEKVRKLMDD 461 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 461 (498)
.+|.++.+...++.+....|+. +.+.+++.++..
T Consensus 230 -----------------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 230 -----------------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -----------------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -----------------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 4556666666666666666665 445556666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.6e-07 Score=84.66 Aligned_cols=245 Identities=14% Similarity=0.145 Sum_probs=143.1
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChh--hHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchH
Q 041942 209 ITGYAKQGEMEKANELFNEVPKRDVV--SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286 (498)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 286 (498)
+.+....+.+.+|..+++.+.+++.. -|..+...|...|+++.|.++|.+.- .++-.|..|.+.|+|+.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 44555667777777777777765443 46667788888888888888875432 34556777888888888
Q ss_pred HHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 041942 287 GKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV 366 (498)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 366 (498)
|.++-.+ -.+.......|-+-..-+-+.|++.+|.+++-.+..|+.. |..|-+.|..+..+++..+--...
T Consensus 810 a~kla~e---~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~d~- 880 (1636)
T KOG3616|consen 810 AFKLAEE---CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHGDH- 880 (1636)
T ss_pred HHHHHHH---hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhChhh-
Confidence 8776522 2343344555555555566778888888888777777643 566667777766666655422110
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH-----------------------hcCCCCC----------------hh
Q 041942 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRD-----------------------EYNIEPN----------------IR 407 (498)
Q Consensus 367 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------------------~~~~~p~----------------~~ 407 (498)
-..|-..+..-+...|++..|+..|-+... .-|-+.. +.
T Consensus 881 --l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavk 958 (1636)
T KOG3616|consen 881 --LHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVK 958 (1636)
T ss_pred --hhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHH
Confidence 122333333334444444444443322211 0111110 11
Q ss_pred HHHhhCChHHHHH------HHHHHHcc-----CCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCceeEE
Q 041942 408 HYGVHGDVELGRL------ANKRLLNM-----RKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473 (498)
Q Consensus 408 ~y~~~g~~~~a~~------~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 473 (498)
..+++|-++.|.. .|+-+.++ ...-+.+...++..+...|++++|-+-|-+..+.+......|.-+
T Consensus 959 llnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqav 1035 (1636)
T KOG3616|consen 959 LLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAV 1035 (1636)
T ss_pred HHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcc
Confidence 2225555555543 12222211 122356778888889999999999999999888887655555433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-07 Score=83.11 Aligned_cols=215 Identities=13% Similarity=0.038 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC-C----CCcchHHHHHHHHHhcC
Q 041942 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP-V----RDLVSWNVMITGYAKQG 216 (498)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~----~~~~~~~~l~~~~~~~~ 216 (498)
....+.+++...|+.+.+..-......|.......+...+...++-+.++.-+++.. . .+..........+...|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 444556666677776666555554445555555444444443345555555554443 1 12222222334556677
Q ss_pred ChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----ccCCchHHHHHHH
Q 041942 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA----DLGDLEVGKKVHC 292 (498)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~~~~~~a~~~~~ 292 (498)
++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.. .| .+...+..++. ..+.+..|..+|+
T Consensus 117 ~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~ 191 (290)
T PF04733_consen 117 DYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFE 191 (290)
T ss_dssp HHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 888888777765 456666777888888888888888888887542 33 33333443332 2335777777775
Q ss_pred HHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCH-HHHHHHHHHHHH
Q 041942 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFA-EESIAMFREMQR 363 (498)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~ 363 (498)
++.... .+++.+.+.+..++...|++++|.+++.+..+ .++.+...++.+....|+. +.+.+++.++..
T Consensus 192 El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 192 ELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 543332 34555555566666666666666666555432 1334444444444445544 444455555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-07 Score=95.48 Aligned_cols=198 Identities=14% Similarity=0.120 Sum_probs=167.4
Q ss_pred CCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc---hhhHHHHHHHHHhcCCHHHHHHHHhcCCCC-C-hhHHH
Q 041942 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK---VLHGNALIDMYAKCGSIERAIEVFLGMRDR-D-VSTWS 339 (498)
Q Consensus 265 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~ 339 (498)
+-+...|...|......++.++|+++.++.+..-++... ...|.++++.-..-|.-+...++|+++.+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 445567888888888999999999999777766544332 456778888888888888999999998863 3 46788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----------hhHH
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN----------IRHY 409 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----------~~~y 409 (498)
.|...|.+.+++++|.++|+.|.+. +......|..++..+.+..+-+.|..++++..+ .-|. +..-
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHH
Confidence 9999999999999999999999885 456778999999999999999999999999987 3444 1122
Q ss_pred HhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCcc
Q 041942 410 GVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 466 (498)
.++|+.++++.+|+-.+.-.|.-...|+.+++.-.++|..+.+..+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 299999999999999999999999999999999999999999999999999998865
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-05 Score=75.00 Aligned_cols=199 Identities=12% Similarity=0.043 Sum_probs=112.3
Q ss_pred hchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHH--HHHHH--hccCChHHHHH
Q 041942 16 TNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNT--IIRGS--AQSQNPLDAVF 91 (498)
Q Consensus 16 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--ll~~~--~~~g~~~~A~~ 91 (498)
+..+.|.+....+...+. -|..++..-+- +..+ .+.+++|+.+.+.-.... +++. +=.+| .+.+..++|+.
T Consensus 26 ~e~e~a~k~~~Kil~~~p-dd~~a~~cKvV-alIq-~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~Dealk 100 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVP-DDEDAIRCKVV-ALIQ-LDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLDEALK 100 (652)
T ss_pred hHHHHHHHHHHHHHhcCC-CcHhhHhhhHh-hhhh-hhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHHHHHH
Confidence 355677777777777763 33444444444 5666 899999997776654211 2222 23344 46889999999
Q ss_pred HHHHHHhCCCCCC-HhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCC-hHHHHHHHHHHHhcCChhHHHHhhccCCCC
Q 041942 92 LYTQMEKCSIKPN-KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN-RFVRNSLIYFHANCGDLNTASVLFDGDAKM 169 (498)
Q Consensus 92 ~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 169 (498)
.++- ..++ ..+...-...|.+.+++++|..+|+.+.+.+.+.. ...-..++.+-. .-.+. +.+.....
T Consensus 101 ~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~v 170 (652)
T KOG2376|consen 101 TLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPEV 170 (652)
T ss_pred HHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccCC
Confidence 9883 3333 33566666778899999999999999987653211 111111111111 11111 23333333
Q ss_pred CcchHHHHH---HHHHhcCChHHHHHHHhcCC--------CCC-----c-----chHHHHHHHHHhcCChHHHHHHHhhC
Q 041942 170 DVVAWSSLT---AGYARRGELSMARSLFDEMP--------VRD-----L-----VSWNVMITGYAKQGEMEKANELFNEV 228 (498)
Q Consensus 170 ~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~--------~~~-----~-----~~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (498)
...+|..+. ..+...|++.+|+++++... ..| + .+-.-|..++...|+.++|..++..+
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 333444333 34556777777777777662 111 0 01223444566677777777777665
Q ss_pred C
Q 041942 229 P 229 (498)
Q Consensus 229 ~ 229 (498)
.
T Consensus 251 i 251 (652)
T KOG2376|consen 251 I 251 (652)
T ss_pred H
Confidence 5
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.3e-07 Score=80.72 Aligned_cols=191 Identities=8% Similarity=-0.101 Sum_probs=129.2
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHH
Q 041942 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYF 149 (498)
Q Consensus 70 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 149 (498)
...|..+...+.+.|+.++|...|++..+.. +.+...|+.+...+...|+++.|...|+...+.. +-+..+|..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3457777788888999999999999988753 3457788888888999999999999999998864 3356677888888
Q ss_pred HHhcCChhHHHHhhccCCCCCc--chHHHHHHHHHhcCChHHHHHHHhcCC-CCCcchHHHHHHHHHhcCChHHH--HHH
Q 041942 150 HANCGDLNTASVLFDGDAKMDV--VAWSSLTAGYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAKQGEMEKA--NEL 224 (498)
Q Consensus 150 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A--~~~ 224 (498)
+...|++++|.+.|+...+.++ .............+++++|...|.+.. ..+...|. ........|+...+ .+.
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~~~~~~ 220 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEETLMER 220 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHHHHHHH
Confidence 8889999999998887554322 212222223445678888888886544 21222222 12223334554333 322
Q ss_pred HhhCCC-------CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 041942 225 FNEVPK-------RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263 (498)
Q Consensus 225 ~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 263 (498)
+....+ ....+|..+...+...|++++|...|++..+.+
T Consensus 221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222212 123567888888888888888888888888664
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.4e-06 Score=76.57 Aligned_cols=190 Identities=8% Similarity=-0.044 Sum_probs=106.7
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCC-CCCCHh-hHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHH---H
Q 041942 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCS-IKPNKF-TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS---L 146 (498)
Q Consensus 72 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l 146 (498)
.|..+...+...|+.+.+.+.+....+.. ..++.. ........+...|+++.+..++++..+.. +.+...+.. +
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 34444555555666666666555554321 111211 11112223455677777777777777653 223333331 1
Q ss_pred HHHHHhcCChhHHHHhhccCCCCCc---chHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHH
Q 041942 147 IYFHANCGDLNTASVLFDGDAKMDV---VAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEK 220 (498)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 220 (498)
.......+..+.+.+.++...+.++ .....+...+...|++++|...+++.. +.+...+..+..++...|++++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 1112223445555555544222222 223344456677788888888877776 4445566777777788888888
Q ss_pred HHHHHhhCCCC-----Ch--hhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 041942 221 ANELFNEVPKR-----DV--VSWNAMISGYVLCGMNKQALEMFEEMRSV 262 (498)
Q Consensus 221 A~~~~~~~~~~-----~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 262 (498)
|...+++..+. +. ..|..+...+...|++++|..++++....
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88887776541 11 23445677788888888888888887533
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.2e-06 Score=69.89 Aligned_cols=187 Identities=14% Similarity=0.026 Sum_probs=86.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHH-HHHHHHHh
Q 041942 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRN-SLIYFHAN 152 (498)
Q Consensus 74 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~ 152 (498)
++.+..+.+..++.+|++++..-.++. +.+....+.|..+|.+..++..|-..++++-.. .|...-|. --...+.+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 334444445555555555555554432 124444455555555555555555555555443 22222221 11233344
Q ss_pred cCChhHHHHhhccCCCC-CcchHHHHH--HHHHhcCChHHHHHHHhcCC-CCCcchHHHHHHHHHhcCChHHHHHHHhhC
Q 041942 153 CGDLNTASVLFDGDAKM-DVVAWSSLT--AGYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAKQGEMEKANELFNEV 228 (498)
Q Consensus 153 ~g~~~~A~~~~~~~~~~-~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (498)
.+.+..|+++...+... +...-..-+ ......+++-.+..++++.. ..+..+.+.......+.|+.+.|.+-|+..
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 45555555555444432 111100001 12233455555555555555 344444444444455556666666666555
Q ss_pred CC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 041942 229 PK----RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264 (498)
Q Consensus 229 ~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 264 (498)
.+ .....|+.-+..| +.|+++.|+++..+++++|+
T Consensus 171 lqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGI 209 (459)
T ss_pred HhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhh
Confidence 43 2334455444333 44556666666666555543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.8e-06 Score=79.77 Aligned_cols=254 Identities=16% Similarity=0.173 Sum_probs=135.7
Q ss_pred HHHHHHHhcCChhHHHHhhcc--CCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 041942 145 SLIYFHANCGDLNTASVLFDG--DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKAN 222 (498)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 222 (498)
+.|+.|.+.|....|.+.... ....|......+..++.+..-+++|-.+|+++..++- .+.+|-+-.-+-+|.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kai 694 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAI 694 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHH
Confidence 456777777777776655432 2224555555555666666666666666665542221 222222222233333
Q ss_pred HHHhhCCCCChh---------------------------hHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041942 223 ELFNEVPKRDVV---------------------------SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275 (498)
Q Consensus 223 ~~~~~~~~~~~~---------------------------~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 275 (498)
++-+-.-...++ ..-.-+.+......|.+|+.+++.+..... -..-|..+.
T Consensus 695 elarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~ia 772 (1636)
T KOG3616|consen 695 ELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIA 772 (1636)
T ss_pred HHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHH
Confidence 333222211110 111123344455667777777777665532 233456666
Q ss_pred HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhHHHHHHHHHHhCCCHHH
Q 041942 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR--DVSTWSTLIGGLAFHGFAEE 353 (498)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 353 (498)
..|+..|+++.|.++| .....++-.|.+|.+.|+|+.|.++-.+...| ....|-+-..-+-.+|++.+
T Consensus 773 dhyan~~dfe~ae~lf----------~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELF----------TEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred HHhccchhHHHHHHHH----------HhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhh
Confidence 7777777777777777 12233455677777778887777777666554 34455555556667777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHhhCChHHHHHHHHHH
Q 041942 354 SIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN----IRHYGVHGDVELGRLANKRL 425 (498)
Q Consensus 354 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~~g~~~~a~~~~~~~ 425 (498)
|.++|-..- .|+. .+..|-+.|..+..+++.++-.-+ .+.-+ ...|...|+++.|+..|-++
T Consensus 843 aeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d-~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 843 AEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD-HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh-hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 777664432 2432 355666777777766666543220 01111 22233556666665555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-05 Score=77.58 Aligned_cols=233 Identities=14% Similarity=0.117 Sum_probs=142.0
Q ss_pred cChHHHHHHHHh-hhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhC-C--------CCCC
Q 041942 35 SDSSALRELIYS-GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC-S--------IKPN 104 (498)
Q Consensus 35 ~~~~~~~~ll~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~--------~~p~ 104 (498)
=|..+-.+++.. .|.- .|+.+.|.+-.+.+ .+-.+|..+.+.|.+.++++-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvt-iG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVT-IGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEE-eccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 355565666641 4555 89999998877666 45567999999999999998887777776442 1 1222
Q ss_pred HhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC-CcchHHHHHHHHHh
Q 041942 105 KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM-DVVAWSSLTAGYAR 183 (498)
Q Consensus 105 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~ 183 (498)
.+=.-..-.....|.+++|..+|++.++. ..|-..|-..|.+++|.++-+.--.- -..||.....-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 22222222235678999999999998874 34556677889999999887653331 22356666666777
Q ss_pred cCChHHHHHHHhcCCCC-----------------------CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHH
Q 041942 184 RGELSMARSLFDEMPVR-----------------------DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMI 240 (498)
Q Consensus 184 ~~~~~~A~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 240 (498)
.++.+.|++.|++...+ |...|.--....-..|+.+.|+.+|....+ |..++
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~V 945 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMV 945 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhhe
Confidence 88899999998877622 222222223333345666666666655432 33344
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 241 SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
...|-.|+.++|-++-++- -|......+...|-..|++.+|..+|
T Consensus 946 rI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred eeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4444445555554443321 13344445555566666666655555
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-06 Score=78.98 Aligned_cols=262 Identities=12% Similarity=0.071 Sum_probs=139.9
Q ss_pred HHhcCChHHHHHHHhcCC---CCCcchHHH---HHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChHH
Q 041942 181 YARRGELSMARSLFDEMP---VRDLVSWNV---MITGYAKQGEMEKANELFNEVPK--R-DVVSWNAMISGYVLCGMNKQ 251 (498)
Q Consensus 181 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~ 251 (498)
+...|++++|...+++.. +.+...+.. ........+..+.+.+.+..... | .......+...+...|++++
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 444555666666555544 222222221 11111123444455555544222 1 22333445567777788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcch--hhHHHHHHHHHhcCCHHHHHHHHhc
Q 041942 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV--LHGNALIDMYAKCGSIERAIEVFLG 329 (498)
Q Consensus 252 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (498)
|...+++..+.. +.+...+..+...+...|++++|...+++.+......++. ..+..+...+...|++++|..++++
T Consensus 133 A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888877664 3345566677777778888888888875555543322222 2344566777788888888888877
Q ss_pred CCCCCh--hHH----H--HHHHHHHhCCCHHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 330 MRDRDV--STW----S--TLIGGLAFHGFAEESIAM--FREMQRLKV--RPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 330 ~~~~~~--~~~----~--~l~~~~~~~~~~~~A~~~--~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
...+.. ... + .++.-+...|....+.++ +........ ............++...|+.+.|..+++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 212 HIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred HhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 652211 111 1 222223334433333222 111111100 1112222356677788889999999998886
Q ss_pred HhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 398 DEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 398 ~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.. ...++.. .............+.++...|++++|.+.+.+.....
T Consensus 292 ~~-~~~~~~~-------------------~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 292 GR-ASSADDN-------------------KQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HH-HhccCch-------------------hhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 62 1110000 0011123445666777888899999999888877554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.2e-06 Score=73.01 Aligned_cols=191 Identities=13% Similarity=0.011 Sum_probs=116.8
Q ss_pred CCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHH---HH
Q 041942 103 PNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSL---TA 179 (498)
Q Consensus 103 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~ 179 (498)
.+..-..-+-..+...|++..|+.-|...++.+ +.+-.++-.-...|...|+-.-|+.=+..+.+.-+.-+.+- ..
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 345555667777888899999999999888643 22233444455678888988888877777665333333333 34
Q ss_pred HHHhcCChHHHHHHHhcCC--CCCcc----hH------------HHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHH
Q 041942 180 GYARRGELSMARSLFDEMP--VRDLV----SW------------NVMITGYAKQGEMEKANELFNEVPK---RDVVSWNA 238 (498)
Q Consensus 180 ~~~~~~~~~~A~~~~~~~~--~~~~~----~~------------~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 238 (498)
.+.+.|.++.|..-|+.+. .|+.. .+ ...+..+...|+...|++....+.+ -|...|..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 6889999999999999887 22211 11 1223344555666666666665543 35556666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 295 (498)
-..+|...|++..|+.=++..-+.. ..+..++.-+-..+...|+.+.+....++.+
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6666666666666665555544332 3334444445555566666666655553433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-05 Score=76.88 Aligned_cols=361 Identities=13% Similarity=0.015 Sum_probs=225.6
Q ss_pred HHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC----C-
Q 041942 96 MEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM----D- 170 (498)
Q Consensus 96 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~- 170 (498)
+....+.-|...|..|.-++.+.|+++.+-+.|++....- -.....|+.+...|...|.-..|..+++.-..+ +
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 3333456677888888888888899998888888887643 345678888888888888888888888754432 2
Q ss_pred cchHHHHHHHHH-hcCChHHHHHHHhcCC--------CCCcchHHHHHHHHHhc-----------CChHHHHHHHhhCCC
Q 041942 171 VVAWSSLTAGYA-RRGELSMARSLFDEMP--------VRDLVSWNVMITGYAKQ-----------GEMEKANELFNEVPK 230 (498)
Q Consensus 171 ~~~~~~l~~~~~-~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~ 230 (498)
...+-..-..|. +-+.+++++.+-.+.. ...+..|..+.-+|... ....++...+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 222222223333 3455555555544443 33344555554444322 123455666666543
Q ss_pred ---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhH
Q 041942 231 ---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG 307 (498)
Q Consensus 231 ---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (498)
.|+.+...+.--|+-.++.+.|++..++..+.+-.-+...|..+.-.+...+++..|..+.+..+...+.......
T Consensus 473 ~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~- 551 (799)
T KOG4162|consen 473 FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD- 551 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch-
Confidence 2333333344456677889999999999988866778888988888889999999999999777777664221111
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC------------------------------C--ChhHHHHHHHHHHhCCCHHHHH
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD------------------------------R--DVSTWSTLIGGLAFHGFAEESI 355 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~------------------------------~--~~~~~~~l~~~~~~~~~~~~A~ 355 (498)
.-+..-..-++.++|+.....+.. + ...++..+..-....+ ..+.
T Consensus 552 -~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~ 628 (799)
T KOG4162|consen 552 -GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAG 628 (799)
T ss_pred -hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcc
Confidence 111222224555555443322210 0 1122222222211111 0000
Q ss_pred HHHHHHHHCCCCCC--------HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHH
Q 041942 356 AMFREMQRLKVRPT--------EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGR 419 (498)
Q Consensus 356 ~~~~~m~~~~~~p~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~ 419 (498)
.-. .+...-+.|. ...|......+.+.++.++|...+.+... +.|- ...+...|..++|.
T Consensus 629 se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 629 SEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred ccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 000 0111112222 22455556788899999999988888866 4444 23344788999999
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH--HHHHhhhCCCc
Q 041942 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK--VRKLMDDSDIK 465 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~ 465 (498)
+.|..++.++|+++....+++.++.+.|+..-|.. ++..+.+.+..
T Consensus 705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999998888887 89999886653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-07 Score=87.67 Aligned_cols=214 Identities=17% Similarity=0.219 Sum_probs=164.0
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHH
Q 041942 178 TAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQ 251 (498)
Q Consensus 178 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 251 (498)
..-+.+.|++.+|.-.|+... +.+...|..|.......++-..|+..+.+..+ .|....-.|.-.|...|.-..
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 344678899999999999887 33456888888888888888888888887765 356677788888999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH-----------HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCH
Q 041942 252 ALEMFEEMRSVGERPDDVTMLSLL-----------TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320 (498)
Q Consensus 252 a~~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (498)
|+..++.-+....+ |..+. ..+.....+....++|-++....+..+|+.+...|.-.|.-.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999887654211 00000 112222334555666657777777778888888999999999999
Q ss_pred HHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 041942 321 ERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLM 396 (498)
Q Consensus 321 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 396 (498)
++|.+.|+.... | |...||.|...++...+..+|+..|+++++ ++|+ .+....|..+|+..|.+++|.+.|-.+
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999987763 4 778999999999999999999999999998 7887 455566777899999999999888776
Q ss_pred HH
Q 041942 397 RD 398 (498)
Q Consensus 397 ~~ 398 (498)
+.
T Consensus 525 L~ 526 (579)
T KOG1125|consen 525 LS 526 (579)
T ss_pred HH
Confidence 55
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.8e-07 Score=80.40 Aligned_cols=183 Identities=14% Similarity=0.003 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc-hhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hh---HHH
Q 041942 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRD--RD-VS---TWS 339 (498)
Q Consensus 267 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~---~~~ 339 (498)
....+..+...+...|+++.|...+++.+...+..+. ...+..+..++.+.|++++|...++++.+ |+ .. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4455666666777777777777777555554433222 23445566677777777777777776653 21 11 344
Q ss_pred HHHHHHHhC--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 041942 340 TLIGGLAFH--------GFAEESIAMFREMQRLKVRPTEI-TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410 (498)
Q Consensus 340 ~l~~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~ 410 (498)
.+..++... |++++|.+.++++.+. .|+.. .+..+..... ......-.... -...|.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~~~~~~~--------~a~~~~ 177 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRLAGKELY--------VARFYL 177 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHHHHHHHH--------HHHHHH
Confidence 445555443 5667777777777663 34422 2211111100 00000000000 023456
Q ss_pred hhCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 411 VHGDVELGRLANKRLLNMRKDES---GDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
+.|++++|...++++++..|+++ .++..++.++...|++++|..+++.+....
T Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 178 KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 78999999999999998877654 689999999999999999999999987643
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-05 Score=82.94 Aligned_cols=319 Identities=12% Similarity=-0.024 Sum_probs=174.1
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCC------CC--hHHHHHHHHHHH
Q 041942 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE------FN--RFVRNSLIYFHA 151 (498)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~ 151 (498)
....|++..+...+..+.......+..........+...|+++++...+....+.--. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445666666666655522111112222223333445667788887777766543111 11 112223334556
Q ss_pred hcCChhHHHHhhccCCC----CCc----chHHHHHHHHHhcCChHHHHHHHhcCC-------CCC--cchHHHHHHHHHh
Q 041942 152 NCGDLNTASVLFDGDAK----MDV----VAWSSLTAGYARRGELSMARSLFDEMP-------VRD--LVSWNVMITGYAK 214 (498)
Q Consensus 152 ~~g~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~--~~~~~~l~~~~~~ 214 (498)
..|++++|...++.... .+. ...+.+...+...|+++.|...+++.. .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 77888888777765322 111 123445556667888888877777665 111 1234455666777
Q ss_pred cCChHHHHHHHhhCCC-------CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHh
Q 041942 215 QGEMEKANELFNEVPK-------RD----VVSWNAMISGYVLCGMNKQALEMFEEMRSVG--ERP--DDVTMLSLLTACA 279 (498)
Q Consensus 215 ~~~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~~p--~~~~~~~li~~~~ 279 (498)
.|+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ..+ ....+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8888888777765442 11 1223344555666788888887777665321 112 1233334455666
Q ss_pred ccCCchHHHHHHHHHHHhhcCCcchhhH-----HHHHHHHHhcCCHHHHHHHHhcCCCCC---h----hHHHHHHHHHHh
Q 041942 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHG-----NALIDMYAKCGSIERAIEVFLGMRDRD---V----STWSTLIGGLAF 347 (498)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~---~----~~~~~l~~~~~~ 347 (498)
..|+.+.|...+.+.............+ ...+..+...|+.+.|...+.....+. . ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 7788888877774443321111100000 111233445677888888776655321 1 113455666777
Q ss_pred CCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 348 HGFAEESIAMFREMQRL----KVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 348 ~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.|++++|...+.+.... |..++ ..+...+..++.+.|+.++|...+.+..+
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888888887776542 22222 23455555677788888888888877776
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.5e-05 Score=74.42 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=126.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCC
Q 041942 171 VVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK--RDVVSWNAMISGYVLCGM 248 (498)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 248 (498)
+..|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.+++-.+++....+ +.+..=+.|+.+|++.++
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNR 1181 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhch
Confidence 345777777777777777777766554 3556677777777777777777777655543 233334567777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHh
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (498)
..+.++.+. -|+......+..-|...+.++.|.-+| .++.-|..|...+...|+++.|.+.-+
T Consensus 1182 l~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y----------~~vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1182 LTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLY----------SNVSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHH----------HHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 666555442 566666677777777777777777777 334455667777777787777776655
Q ss_pred cCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 041942 329 GMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLM 396 (498)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 396 (498)
+.. +..+|-.+-.+|...+.+.-| +|...++.....-...++..|...|-+++.+.+++..
T Consensus 1245 KAn--s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1245 KAN--STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hcc--chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 433 455666666666655554432 2333333344455566666677777777666666544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.3e-06 Score=81.06 Aligned_cols=354 Identities=10% Similarity=0.080 Sum_probs=210.9
Q ss_pred CCChhhHHHHHHH--HhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHh-C--------
Q 041942 67 EPDTFMYNTIIRG--SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY-G-------- 135 (498)
Q Consensus 67 ~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-------- 135 (498)
.-|..+-..++.. |..-|+.+.|.+-.+.++ +...|..+.+.|.+..+++-|.-.+..|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 3456666666653 677899999988877665 3467888888898888888777766666431 1
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCC-cchHHHHHHHHHh
Q 041942 136 FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRD-LVSWNVMITGYAK 214 (498)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~ 214 (498)
-.++ .+-....-.....|.+++|+.+|.+-.. |..|-..|-..|.|++|.++-+.-...- -.||-.-..-+-.
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 1121 2222233334566777788777765543 3344455666778888877765433111 1345555555566
Q ss_pred cCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHH
Q 041942 215 QGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTL 294 (498)
Q Consensus 215 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 294 (498)
.++.+.|++.|++..-+--..+..|.. ++.....+.+.+. |...|.-...-+-..|+.+.|..+| +.
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e------~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y-~~ 937 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKE------YPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFY-SS 937 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHh------ChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHH-HH
Confidence 777888888777765433333322221 2222223333332 3345555556666778888888888 43
Q ss_pred HHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CC--CCH
Q 041942 295 LDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK--VR--PTE 370 (498)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~~--p~~ 370 (498)
.+. |-+++...|-.|+.++|-++-++- .|......|.+.|...|++.+|+.+|.+..... ++ -..
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn 1006 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN 1006 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 332 345666777788888888877653 366677778888888999999988888764310 00 000
Q ss_pred HHHHHHHHHHhhcC--CHHHHHHHHHHhHHhcCCCCC--hhHHHhhCChHHHHHHH---------HHH-HccCCC-CCch
Q 041942 371 ITFVGVLVACSHAG--KVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELGRLAN---------KRL-LNMRKD-ESGD 435 (498)
Q Consensus 371 ~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~p~--~~~y~~~g~~~~a~~~~---------~~~-~~~~~~-~~~~ 435 (498)
..-.-|...+...| +.-.|.++|++. |..-+ +..|.+.|-+.+|.++. +.+ ..++|. ||..
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~----g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEEL----GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHc----chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 01111222222222 334445555543 32222 56677888887776532 111 134554 7788
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 436 YVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
.+.-+..+.+..++++|..++-..+
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 8899999999999999988776554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-06 Score=74.32 Aligned_cols=114 Identities=9% Similarity=0.071 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhH-HHhhCC--hH
Q 041942 348 HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRH-YGVHGD--VE 416 (498)
Q Consensus 348 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~-y~~~g~--~~ 416 (498)
.++.++++..+++..+.+ +.+...|..+...|...|+++.|...+++..+ +.|+ ... |...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 455566666666665532 23456666666667777777777777776666 3443 121 234454 47
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
+|.++++++++.+|+++.++..++..+.+.|++++|+..++++.+...+
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7888888888888888888888888888889999999988888776553
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-05 Score=67.71 Aligned_cols=207 Identities=14% Similarity=0.144 Sum_probs=117.8
Q ss_pred cCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHH-HHHHHHH
Q 041942 184 RGELSMARSLFDEMP--VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQAL-EMFEEMR 260 (498)
Q Consensus 184 ~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~ 260 (498)
.|++..++..-.... +.+...-..+.++|...|.......-...-..+.......+.......++.++-. ++.+.+.
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a 100 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVA 100 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHH
Confidence 444444444443333 1222333334455556665544333333222333344444444444444444433 3344444
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHH
Q 041942 261 SVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR-DVSTWS 339 (498)
Q Consensus 261 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~ 339 (498)
......+......-...|+..|++++|.+.. +. + .+......=+..+.+..+++-|...++.|.+- +-.+.+
T Consensus 101 ~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~-~~----~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLt 173 (299)
T KOG3081|consen 101 DSTDGSNLIDLLLAAIIYMHDGDFDEALKAL-HL----G--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLT 173 (299)
T ss_pred hhccchhHHHHHHhhHHhhcCCChHHHHHHH-hc----c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 4433444344444455677888888888776 22 1 12222222344556777788888888888764 345666
Q ss_pred HHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 340 TLIGGLAF----HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 340 ~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+...-++...|++++|..+++....
T Consensus 174 QLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 174 QLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 56665554 34678888888888764 578888888888888888888888888877766
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-05 Score=66.43 Aligned_cols=311 Identities=14% Similarity=0.061 Sum_probs=201.3
Q ss_pred HHHHHHhhhhccCCChHHHHHhcccCC--CC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHH-HHHh
Q 041942 40 LRELIYSGSVVIPGAINYAHKMFVKIT--EP-DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV-LKAC 115 (498)
Q Consensus 40 ~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~ 115 (498)
+...+. .+.+ ..++++|.+++..-. .| +....+.|.-.|....++..|-..|+++-. ..|...-|..- ...+
T Consensus 13 ftaviy-~lI~-d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVY-RLIR-DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHH-HHHH-HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHH
Confidence 344444 3445 788999999987766 33 555666777777888999999999999976 35766666543 3456
Q ss_pred hcccchhhHHHHHHHHHHhCCCCChHHHH--HHHHHHHhcCChhHHHHhhccCC-CCCcchHHHHHHHHHhcCChHHHHH
Q 041942 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRN--SLIYFHANCGDLNTASVLFDGDA-KMDVVAWSSLTAGYARRGELSMARS 192 (498)
Q Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 192 (498)
.+.+.+..|.++...|.+. ++...-. .-.......+++..+..+.+... +.+..+.+.......+.|+++.|++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 6778888888888887652 2211111 11122345688888999998887 4677777777777889999999999
Q ss_pred HHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-----------------CCh---------------hhH
Q 041942 193 LFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEVPK-----------------RDV---------------VSW 236 (498)
Q Consensus 193 ~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------------~~~---------------~~~ 236 (498)
-|+... -.....|+..+ +..+.|+.+.|.+...++.+ +|+ ..+
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 998877 23345566544 45677889999888877652 111 235
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHH
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRSV-GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (498)
|.-...+.+.|+++.|.+.+.+|-.+ ....|++|...+.-.=. .+++-...+-+.-++...+ ....+|..++-.||
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP--fP~ETFANlLllyC 321 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP--FPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC--CChHHHHHHHHHHh
Confidence 55555667889999999998888632 33557777766543322 2334444444423334333 44567778888999
Q ss_pred hcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRDR-----DVSTWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
+..-++-|-+++.+-... +...|+.|=..-...-..++|.+-++.+
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999988765432 3334443333223344556665555444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.5e-06 Score=85.41 Aligned_cols=226 Identities=16% Similarity=0.137 Sum_probs=162.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC-C-------CCcchHHHHHHHHHhcCChHHHHHHHhhCCC-CC-hhhHHHH
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP-V-------RDLVSWNVMITGYAKQGEMEKANELFNEVPK-RD-VVSWNAM 239 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~l 239 (498)
+...|-..|......++.++|.+++++.. . .-.-.|.++++.-..-|.-+...++|+++.+ -| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34456666777777777777777777766 1 1123677777777777777788888888776 23 3567788
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCC
Q 041942 240 ISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS 319 (498)
Q Consensus 240 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (498)
...|.+.+.+++|.++|+.|.+.- .-....|...+..+.+..+-+.|..++.+.+...+-..........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 888888888888888888887542 2456678888888888888888888887777666554556666677777788888
Q ss_pred HHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHH
Q 041942 320 IERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT--EITFVGVLVACSHAGKVEEGKKYFK 394 (498)
Q Consensus 320 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (498)
.+.+..+|+.... +-...|+..++.=.++|+.+.+..+|++.+..++.|- ...|...+..--+.|+-..++.+=.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKa 1695 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKA 1695 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 8888888887764 2456888888888888888889999999888877775 3455555555555566555444443
Q ss_pred Hh
Q 041942 395 LM 396 (498)
Q Consensus 395 ~~ 396 (498)
++
T Consensus 1696 rA 1697 (1710)
T KOG1070|consen 1696 RA 1697 (1710)
T ss_pred HH
Confidence 33
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-06 Score=70.48 Aligned_cols=105 Identities=10% Similarity=0.004 Sum_probs=64.2
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-------
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN------- 405 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------- 405 (498)
++..+..+...+...|++++|...|+.+.. ..| +...+..+..++.+.|++++|...+++..+ ..|+
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~---l~p~~~~a~~~ 97 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM---LDASHPEPVYQ 97 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCcHHHHH
Confidence 333444556666677777777777777766 334 456666666677777777777777777665 3333
Q ss_pred -hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 406 -IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 406 -~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
...+...|++++|...|+++++..|+++..|...+.+.
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 22233556666666666666666666666665555543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00061 Score=73.05 Aligned_cols=316 Identities=11% Similarity=-0.000 Sum_probs=201.8
Q ss_pred HHHhcCChhHHHHhhccCCC----CCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCC---c-----chHHHHHHHH
Q 041942 149 FHANCGDLNTASVLFDGDAK----MDVVAWSSLTAGYARRGELSMARSLFDEMP----VRD---L-----VSWNVMITGY 212 (498)
Q Consensus 149 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~---~-----~~~~~l~~~~ 212 (498)
.....|+++.+..+++.+.. .++.........+...|++++|..++.... ..+ . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 44556777777777766532 233333444556677889999888887653 111 1 1122233456
Q ss_pred HhcCChHHHHHHHhhCCC----CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHh
Q 041942 213 AKQGEMEKANELFNEVPK----RDV----VSWNAMISGYVLCGMNKQALEMFEEMRSVGE---RPD--DVTMLSLLTACA 279 (498)
Q Consensus 213 ~~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~---~p~--~~~~~~li~~~~ 279 (498)
...|++++|...++.... .+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 688999999998887543 121 2445566777889999999999988764311 111 234455566778
Q ss_pred ccCCchHHHHHHHHHHHh---hcCC--c-chhhHHHHHHHHHhcCCHHHHHHHHhcCCC------C--ChhHHHHHHHHH
Q 041942 280 DLGDLEVGKKVHCTLLDM---TSGV--A-KVLHGNALIDMYAKCGSIERAIEVFLGMRD------R--DVSTWSTLIGGL 345 (498)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~---~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~~~~ 345 (498)
..|+++.|...+++.... .+.. + ....+..+...+...|++++|...+.+... + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998665543 2211 1 122334455667778999999988876542 1 133455566778
Q ss_pred HhCCCHHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----------hhHH
Q 041942 346 AFHGFAEESIAMFREMQRLK--VRPTEI--TF--VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN----------IRHY 409 (498)
Q Consensus 346 ~~~~~~~~A~~~~~~m~~~~--~~p~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----------~~~y 409 (498)
...|++++|...+.++.... ...... .. ...+..+...|+.+.|.+++..... ...... ...+
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~-~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK-PEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC-CCCccchhHHHHHHHHHHHH
Confidence 88999999999998886521 111111 11 1122444557899999998877644 111111 1234
Q ss_pred HhhCChHHHHHHHHHHHccCCCCCch------HHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 410 GVHGDVELGRLANKRLLNMRKDESGD------YVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
...|+.++|...++++++........ +..++.++...|+.++|...+.+..+..-.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 48899999999999999765443333 234567888999999999999999987643
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00061 Score=68.28 Aligned_cols=365 Identities=14% Similarity=0.119 Sum_probs=252.5
Q ss_pred CcChHHHHHHHHhhhhccCCChHHHHHhcccCC--CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCC--CCCCHhhHH
Q 041942 34 NSDSSALRELIYSGSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCS--IKPNKFTFS 109 (498)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~ 109 (498)
..|+..|..++.. -. ..+-...-++..... ..|+..-+..+.++...+-+.+-++++++..-.. ..-+...-+
T Consensus 949 R~D~~LW~~VL~e-~n--~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQn 1025 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNE-EN--PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQN 1025 (1666)
T ss_pred ccChHHHHHHHhc-cC--hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhh
Confidence 3567777777741 00 011112222333332 4566667778889999999999999999986422 122333344
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHH
Q 041942 110 FVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSM 189 (498)
Q Consensus 110 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 189 (498)
.||-...+ -+...+.+..+++-..+ .| .+.......+-+++|..+|++... +....+.|+. .-+..+.
T Consensus 1026 LLiLtAik-ad~trVm~YI~rLdnyD-a~------~ia~iai~~~LyEEAF~ifkkf~~-n~~A~~VLie---~i~~ldR 1093 (1666)
T KOG0985|consen 1026 LLILTAIK-ADRTRVMEYINRLDNYD-AP------DIAEIAIENQLYEEAFAIFKKFDM-NVSAIQVLIE---NIGSLDR 1093 (1666)
T ss_pred hHHHHHhh-cChHHHHHHHHHhccCC-ch------hHHHHHhhhhHHHHHHHHHHHhcc-cHHHHHHHHH---HhhhHHH
Confidence 55544333 34556666666665433 12 234455667778999999876532 2333333433 3456777
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH
Q 041942 190 ARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV 269 (498)
Q Consensus 190 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 269 (498)
|.++-++.. .+..|..+..+-.+.|.+.+|.+-|-+. .|+..|.-++....+.|.|++-...+...++..-.|...
T Consensus 1094 A~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id 1169 (1666)
T KOG0985|consen 1094 AYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID 1169 (1666)
T ss_pred HHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch
Confidence 777777664 4467899999999999999999888665 456678889999999999999999988777776666554
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCC
Q 041942 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHG 349 (498)
Q Consensus 270 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 349 (498)
+.||-+|++.+++.+...+. ..|+......+.+-|...|.++.|.-+|.. +.-|..|...+...|
T Consensus 1170 --~eLi~AyAkt~rl~elE~fi--------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1170 --SELIFAYAKTNRLTELEEFI--------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTLVYLG 1234 (1666)
T ss_pred --HHHHHHHHHhchHHHHHHHh--------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHHHHHH
Confidence 46888999999988877766 236666667788888888999988888864 557888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCC---------ChhHHHhhCChHHHHH
Q 041942 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP---------NIRHYGVHGDVELGRL 420 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p---------~~~~y~~~g~~~~a~~ 420 (498)
+++.|...-++. .+..||..+-.+|...+.+.-|.- .|+.. -+..|...|-+++-..
T Consensus 1235 eyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQi--------CGL~iivhadeLeeli~~Yq~rGyFeElIs 1300 (1666)
T KOG0985|consen 1235 EYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQI--------CGLNIIVHADELEELIEYYQDRGYFEELIS 1300 (1666)
T ss_pred HHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHHh--------cCceEEEehHhHHHHHHHHHhcCcHHHHHH
Confidence 999988765543 456789888899988776654432 22211 1556778999999999
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhC
Q 041942 421 ANKRLLNMRKDESGDYVLLSNIYASR 446 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (498)
+++..+-+.......+..|+-.|.+-
T Consensus 1301 l~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1301 LLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 99999988888888888887777654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.6e-06 Score=79.99 Aligned_cols=238 Identities=14% Similarity=0.115 Sum_probs=172.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 041942 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283 (498)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 283 (498)
.-..+...+.+.|-...|..+|++. ..|.-++.+|...|+..+|..+..+..+. +||+..|..+........-
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 3355677888999999999999874 56777888999999999999998888873 7888889888888777777
Q ss_pred chHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHH
Q 041942 284 LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMFRE 360 (498)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~ 360 (498)
+++|.++.+....... ..+.......++++++.+.|+.-.+- -..+|-.+..+..+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sarA~--------r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQ--------RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHHHH--------HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 8888888855554421 12222233478899999998754432 457888888888999999999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--hhHH----HhhCChHHHHHHHHHHHccC--CC
Q 041942 361 MQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHY----GVHGDVELGRLANKRLLNMR--KD 431 (498)
Q Consensus 361 m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~y----~~~g~~~~a~~~~~~~~~~~--~~ 431 (498)
... ..|+ ...|+.+-.+|.+.|+-.+|...+++..+ ....|= -..| .+.|.+++|.+++.++..+. ..
T Consensus 545 cvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 545 CVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred Hhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 888 6776 67899999999999999999999999888 442221 1122 27788888888888877543 23
Q ss_pred CCchHHHHHHHHHhCCC---chHHHHHHHHh
Q 041942 432 ESGDYVLLSNIYASRGE---WNRVEKVRKLM 459 (498)
Q Consensus 432 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~m 459 (498)
|+.+...++....+.-. .+++.......
T Consensus 622 d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~ 652 (777)
T KOG1128|consen 622 DDEVLLIIVRTVLEGMTDESGDEATGLKGKL 652 (777)
T ss_pred cchhhHHHHHHHHhhccccccchhhhhhHHH
Confidence 55666666665554432 44444444333
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-05 Score=79.08 Aligned_cols=433 Identities=12% Similarity=0.027 Sum_probs=228.3
Q ss_pred hHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHH
Q 041942 21 LKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQME 97 (498)
Q Consensus 21 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 97 (498)
+..+...+....+.|+-...-..+..+|+. ..+...|.+.|+... ..+...+-.+...|++..+++.|..+.-..-
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd-~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRD-SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 344445555555555544433334437777 557778888887776 3445667778888888888888888733332
Q ss_pred hCC-CCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcch-HH
Q 041942 98 KCS-IKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA-WS 175 (498)
Q Consensus 98 ~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 175 (498)
+.. ...-..-|...--.+...+++..+..-|+...+.. +.|...|..+..+|.++|++..|.++|++....++.. |.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 211 00011223332233456677888888888887765 4477788888888888888888888887665543332 22
Q ss_pred H--HHHHHHhcCChHHHHHHHhcCC---------CCC-cchHHHHHHHHHhcCChHHHHHHHhhCC-------C----CC
Q 041942 176 S--LTAGYARRGELSMARSLFDEMP---------VRD-LVSWNVMITGYAKQGEMEKANELFNEVP-------K----RD 232 (498)
Q Consensus 176 ~--l~~~~~~~~~~~~A~~~~~~~~---------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~----~~ 232 (498)
. .....+..|.+.+|+..+.... ..+ ..++..+...+.-.|=..+|..+++... . .+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 2 2233456788888888777665 111 1222222222222232223333332221 1 11
Q ss_pred hhhHHHHHHHHHhCCC--hHH----HHHH-HHHHHhCCCCC--------------------CHHHHHHHHHHHhc-----
Q 041942 233 VVSWNAMISGYVLCGM--NKQ----ALEM-FEEMRSVGERP--------------------DDVTMLSLLTACAD----- 280 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g~--~~~----a~~~-~~~m~~~g~~p--------------------~~~~~~~li~~~~~----- 280 (498)
...|-.+-.+|.---. ++. ...+ +.+....+.-| +..+|..++..|.+
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHc
Confidence 1122211111110000 000 0001 11122222111 12222222222211
Q ss_pred -cC--CchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHH
Q 041942 281 -LG--DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEES 354 (498)
Q Consensus 281 -~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 354 (498)
.+ +...|..-+...++.. ..+..+|+.|... ...|++.-|...|-+-. +.+..+|..+.-.+....+++.|
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHh
Confidence 01 1112333332222211 1233444444333 33455555555553322 23556777777777788888889
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH---hcCCCCChhHHH-----------------hhC
Q 041942 355 IAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD---EYNIEPNIRHYG-----------------VHG 413 (498)
Q Consensus 355 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~p~~~~y~-----------------~~g 413 (498)
...|..... +.|+ ...|......-...|+.-++..+|..--. ..|-.|+...+. ..+
T Consensus 870 ~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ 947 (1238)
T KOG1127|consen 870 EPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTAR 947 (1238)
T ss_pred hHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhh
Confidence 888888877 5564 55666555555666777777776655221 112223211111 334
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
++..|--..++.....|++..+|...+...-..+.+.+|.++..++.
T Consensus 948 ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 948 KISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred hhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44455556777777889999999999999999999999888877653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-05 Score=79.74 Aligned_cols=236 Identities=11% Similarity=0.056 Sum_probs=140.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC--CCC-cchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhC
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP--VRD-LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLC 246 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (498)
+...+..|+..+...+++++|.++.+... .|+ ...|-.+...+.+.++.+++.-+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 34455566666666666666666666444 232 23343343455555554443332 233333344
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHH
Q 041942 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEV 326 (498)
Q Consensus 247 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (498)
.++.-+..+...|... .-+...+..+..+|-+.|+.+++..+|++.++-. +-++.+.|.+...|... ++++|..+
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 4444444444444443 2233466667777777777777777776655544 45666677777777777 78888777
Q ss_pred HhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 327 FLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE-ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
+.+. +..|...+++..+.++|.++.. ..|+. ..+..+.+.....-....+..++.-+
T Consensus 172 ~~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l--------- 229 (906)
T PRK14720 172 LKKA-----------IYRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDL--------- 229 (906)
T ss_pred HHHH-----------HHHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHH---------
Confidence 6553 3446777788888888888888 34543 33333333333322233333333222
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (498)
-..|....+++++..+++.+++.+|.|..+..-++.+|..
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 3356677788888899999998999888888888888873
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=70.19 Aligned_cols=103 Identities=9% Similarity=-0.010 Sum_probs=87.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHH
Q 041942 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLL 426 (498)
Q Consensus 355 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~ 426 (498)
..++++.++ +.|+. +..+...+...|++++|...|+.... ..|+ ...+...|++++|...|++++
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456677776 45654 55567888999999999999999987 5665 333448999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+++|+++.++..++.++...|++++|+..|++..+...
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999987554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.3e-05 Score=76.79 Aligned_cols=378 Identities=13% Similarity=0.020 Sum_probs=209.2
Q ss_pred ChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhh
Q 041942 85 NPLDAVFLYTQMEKCSIKPN-KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLF 163 (498)
Q Consensus 85 ~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 163 (498)
+...|+..|-+..+ +.|+ ...|..|-..|....+...|.+.|+..-+.+ ..+...+......|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alr--ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALR--LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 35666666655544 2333 2357777777777777777888887777654 345666777777888888888877774
Q ss_pred ccCCCCC-----cchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChh-
Q 041942 164 DGDAKMD-----VVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV- 234 (498)
Q Consensus 164 ~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 234 (498)
-...+.+ ...|....-.|...++..+|+.-|+... +.|...|..+..+|...|++..|.++|.++..-++.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 3222211 1223334445667777777777777665 555667777778888888888888888666542221
Q ss_pred --hHHHHHHHHHhCCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHH------hhcC
Q 041942 235 --SWNAMISGYVLCGMNKQALEMFEEMRSV------GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD------MTSG 300 (498)
Q Consensus 235 --~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~ 300 (498)
.-....-.-+..|.+.+|...+...... +..--..++..+...+...|-..++..++++.++ ....
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 1112223344567777777776665421 1111122222222222222222222222211111 1110
Q ss_pred CcchhhHHH-------------------HHHHHH----hcCCH---H---HHHHHHhcCCC--CChhHHHHHHHHHHh--
Q 041942 301 VAKVLHGNA-------------------LIDMYA----KCGSI---E---RAIEVFLGMRD--RDVSTWSTLIGGLAF-- 347 (498)
Q Consensus 301 ~~~~~~~~~-------------------l~~~~~----~~~~~---~---~A~~~~~~~~~--~~~~~~~~l~~~~~~-- 347 (498)
..+...|.. ++..+. +.+.. + -+.+.+-.-.+ .+..+|..++..|.+
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHH
Confidence 111111111 111111 11111 1 01111100000 134556666555544
Q ss_pred ------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHH-------HhhC
Q 041942 348 ------HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHY-------GVHG 413 (498)
Q Consensus 348 ------~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y-------~~~g 413 (498)
..+...|+..+++.++ ...+...+...+......|++.-|...|-+-+. ..|. .-+| ....
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~---sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVLSGIGNVACAQHCFIKSRF---SEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHhhccchhhhhhhhhhhhhh---ccccchhheeccceeEEecc
Confidence 1233578888888877 444444444444444666777777777755544 3443 2222 2788
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHH--hhhCCCccCCce
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL--MDDSDIKKQPGC 470 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--m~~~~~~~~~~~ 470 (498)
+++.|...|.++..++|.+...|.-.+......|+.-++..+|.. ....+-...+++
T Consensus 865 d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f 923 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKF 923 (1238)
T ss_pred cHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchh
Confidence 999999999999999999999999999999999999999998887 333333333433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-07 Score=53.25 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 364 LKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 364 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
.|+.||..||+.|+.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888773
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-07 Score=53.40 Aligned_cols=32 Identities=31% Similarity=0.301 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHhhccC
Q 041942 135 GFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166 (498)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 166 (498)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00086 Score=62.72 Aligned_cols=390 Identities=13% Similarity=0.112 Sum_probs=206.7
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHH
Q 041942 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSL 146 (498)
Q Consensus 67 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 146 (498)
+-|+.+|+.||+-+... .++++.+.++++... .+-....|..-|+.-.+.++++.++.+|.+.+..- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 44788999999988666 999999999999763 34456788889999999999999999999998764 356666666
Q ss_pred HHHHHh-cCChhHHHH----hhc------cCCCCCcchHHHHHHH---------HHhcCChHHHHHHHhcCCCCCcc---
Q 041942 147 IYFHAN-CGDLNTASV----LFD------GDAKMDVVAWSSLTAG---------YARRGELSMARSLFDEMPVRDLV--- 203 (498)
Q Consensus 147 ~~~~~~-~g~~~~A~~----~~~------~~~~~~~~~~~~l~~~---------~~~~~~~~~A~~~~~~~~~~~~~--- 203 (498)
++--.+ .|+...+.. .|+ .|...+-..|+..+.. +..+.+++...+++.++......
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 553332 233333221 121 1222333445554432 33344566677777777611111
Q ss_pred -------hHHHHHHHH-------HhcCChHHHHHHHhhCCC------CChh---------------hHHHHHHHHHhCCC
Q 041942 204 -------SWNVMITGY-------AKQGEMEKANELFNEVPK------RDVV---------------SWNAMISGYVLCGM 248 (498)
Q Consensus 204 -------~~~~l~~~~-------~~~~~~~~A~~~~~~~~~------~~~~---------------~~~~l~~~~~~~g~ 248 (498)
.|..=|+.. -+...+..|.++++++.. .+.. .|-.+|.-=...+-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 111111110 112234444444444331 0000 01111111111000
Q ss_pred h--------HHHHHHHHHH-HhCCCCCCHHH-HHHHHHHHhc----cCC-------chHHHHHHHHHHHhhcCCcchhhH
Q 041942 249 N--------KQALEMFEEM-RSVGERPDDVT-MLSLLTACAD----LGD-------LEVGKKVHCTLLDMTSGVAKVLHG 307 (498)
Q Consensus 249 ~--------~~a~~~~~~m-~~~g~~p~~~~-~~~li~~~~~----~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 307 (498)
- ....-++++. .-.+..|+... +...+..-++ .|+ .+++..+++..+... ...+..+|
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l-~~~~~~Ly 331 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL-LKENKLLY 331 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 0 0011111111 11122222111 0111111111 001 233333442222111 11122222
Q ss_pred HHHHHHHHhcC---CHHHHHHHHhcCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 041942 308 NALIDMYAKCG---SIERAIEVFLGMRD----RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVA 379 (498)
Q Consensus 308 ~~l~~~~~~~~---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 379 (498)
..+.+.--..- ..+....+++++.. .-..+|..++..-.+......|..+|.++.+.+..+ .....+.++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 22221111111 13333344443332 123467777777777788888888888888877766 56667777766
Q ss_pred HhhcCCHHHHHHHHHHhHHhcCCCCC-hhHH----HhhCChHHHHHHHHHHHcc--CCC-CCchHHHHHHHHHhCCCchH
Q 041942 380 CSHAGKVEEGKKYFKLMRDEYNIEPN-IRHY----GVHGDVELGRLANKRLLNM--RKD-ESGDYVLLSNIYASRGEWNR 451 (498)
Q Consensus 380 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y----~~~g~~~~a~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~ 451 (498)
++. ++..-|.++|+.-.+.+|-.|. +..| ...++-..++.+|++++.. .|+ ...+|..++.--..-|+...
T Consensus 412 ~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 654 7788888888887776666665 2222 2778888888888888865 332 23688888888888888888
Q ss_pred HHHHHHHhhhC
Q 041942 452 VEKVRKLMDDS 462 (498)
Q Consensus 452 A~~~~~~m~~~ 462 (498)
++++-+++...
T Consensus 491 i~~lekR~~~a 501 (656)
T KOG1914|consen 491 ILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHh
Confidence 88888777553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-05 Score=79.17 Aligned_cols=124 Identities=17% Similarity=0.180 Sum_probs=87.3
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-------
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN------- 405 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------- 405 (498)
++..+-.|.....+.|++++|..+|+...+ +.|+ ......+...+.+.+++++|....++... ..|+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 466667777777777777777777777777 5665 44555566777777777777777777765 4555
Q ss_pred -hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 406 -IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 406 -~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
.......|.+++|..+|++++..+|+++.++..++.++...|+.++|...|++..+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222227777777777777777777777777777777777777777777777777543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.6e-06 Score=76.90 Aligned_cols=105 Identities=15% Similarity=0.095 Sum_probs=67.2
Q ss_pred HHHHHHHHHH-HCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHhh-------CChHHHHHHHH
Q 041942 353 ESIAMFREMQ-RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHYGVH-------GDVELGRLANK 423 (498)
Q Consensus 353 ~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~~-------g~~~~a~~~~~ 423 (498)
...++|-++. ..+..+|+.....|--.|--.|++++|...|+.+.. ++|+ ...|+|. .+.++|+..|+
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~ 488 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYN 488 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHH
Confidence 3334444433 333335555555555556666777777777777655 5665 3334333 35677777777
Q ss_pred HHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
+++++.|.-..++..|+-.|+..|.+++|.+.|-+.+
T Consensus 489 rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 489 RALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777888888888888888888888888887766654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-05 Score=69.02 Aligned_cols=183 Identities=10% Similarity=0.000 Sum_probs=110.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCC--CC-h---hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 041942 201 DLVSWNVMITGYAKQGEMEKANELFNEVPK--RD-V---VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD--VTML 272 (498)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~ 272 (498)
....+..+...+...|++++|...|+++.+ |+ . .++..+..++...|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 445566667777777888888877776653 22 1 35566677777778888888888777755321111 1333
Q ss_pred HHHHHHhcc--------CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHH
Q 041942 273 SLLTACADL--------GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGG 344 (498)
Q Consensus 273 ~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 344 (498)
.+..++... |+.+.|.+.++..+...+..+ .....+..... ..... ......+...
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~a~~~~~~----~~~~~----------~~~~~~~a~~ 175 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE--YAPDAKKRMDY----LRNRL----------AGKELYVARF 175 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHH----HHHHH----------HHHHHHHHHH
Confidence 344444433 566677777755554433221 11111111100 00000 0111245667
Q ss_pred HHhCCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 345 LAFHGFAEESIAMFREMQRLKV-RP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 345 ~~~~~~~~~A~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
|...|++++|+..+++..+..- .| ....+..+..++.+.|++++|..+++.+...
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8889999999999999887421 12 3567888889999999999999998888763
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.1e-05 Score=74.58 Aligned_cols=211 Identities=16% Similarity=0.084 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChH
Q 041942 142 VRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP--VRDLVSWNVMITGYAKQGEME 219 (498)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 219 (498)
.-..+...+...|-...|..+|++. ..|...+.+|+..|+..+|..+..+.. +||+..|..+.+......-++
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 3345556666666666666666654 235555566666666666666555444 556666666666655555566
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhc
Q 041942 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299 (498)
Q Consensus 220 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 299 (498)
+|.++++....+ +-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+.| .... ..
T Consensus 475 kawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF-~rcv-tL 548 (777)
T KOG1128|consen 475 KAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF-HRCV-TL 548 (777)
T ss_pred HHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH-HHHh-hc
Confidence 666666554322 22222222334566666666666555443 334455555555556666666666666 2222 12
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
.+-+...||.+-.+|.+.++-.+|...+.+..+ .+...|...+....+.|.+++|++.+.++.+
T Consensus 549 ~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 549 EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 233455566666666666666666666665553 2334455555555666666666666666544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00014 Score=67.09 Aligned_cols=194 Identities=13% Similarity=0.077 Sum_probs=137.4
Q ss_pred CCChHHHHHhcccCC------CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHH
Q 041942 52 PGAINYAHKMFVKIT------EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGF 125 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 125 (498)
..++.++...-+.++ .|+...+...+.+......-..+..++-+-.+. .-...-|...+. ....|+.+.|+
T Consensus 250 ~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~ 326 (484)
T COG4783 250 EERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEAL 326 (484)
T ss_pred hhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHH
Confidence 456677777777776 456666777777655443333333333322221 122334555444 45678999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC--CC-cchHHHHHHHHHhcCChHHHHHHHhcCC---C
Q 041942 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK--MD-VVAWSSLTAGYARRGELSMARSLFDEMP---V 199 (498)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~ 199 (498)
..++.+.+.- +-|+..+......+.+.++.++|.+.+++... |+ ...+-.+..++.+.|++.+|+..++... +
T Consensus 327 ~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 327 KLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999988763 45677777888899999999999999988665 33 4456667788999999999999998887 6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 041942 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263 (498)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 263 (498)
.|+..|..|..+|...|+..++... ....|...|++++|...+....+..
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A--------------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLA--------------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHH--------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 6788999999999999988777653 3456778889999888888777553
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00018 Score=65.63 Aligned_cols=217 Identities=12% Similarity=0.038 Sum_probs=134.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccC-CchHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 041942 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDD-VTMLSLLTACADLG-DLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313 (498)
Q Consensus 236 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (498)
+..+-..+...++.++|+.++.++++. .|+. .+|+.--.++...| +++++...+++.+.... .+..+|+.....
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np--knyqaW~~R~~~ 115 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP--KNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC--cchHHhHHHHHH
Confidence 334444555667777888887777755 3433 34444444444555 46777777755555443 233344433333
Q ss_pred HHhcCC--HHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc---CC
Q 041942 314 YAKCGS--IERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA---GK 385 (498)
Q Consensus 314 ~~~~~~--~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~ 385 (498)
+.+.|+ .+++..+++++.+ .|..+|+...-++...|+++++++.++++++.+. -|...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhcccccc
Confidence 444454 2566777766653 4667888888888888889999999999888542 3455666555444443 22
Q ss_pred H----HHHHHHHHHhHHhcCCCCC---hhHHH-----h----hCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC--
Q 041942 386 V----EEGKKYFKLMRDEYNIEPN---IRHYG-----V----HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG-- 447 (498)
Q Consensus 386 ~----~~a~~~~~~~~~~~~~~p~---~~~y~-----~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 447 (498)
. ++..+...+++. ..|+ +-.|. . .++..+|...+.++.+.+|.++.+...|+..|....
T Consensus 195 ~~~~~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~ 271 (320)
T PLN02789 195 LEAMRDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQP 271 (320)
T ss_pred ccccHHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhcc
Confidence 2 456666656655 3444 22222 2 244566888888888888999999999999998743
Q ss_pred ----------------CchHHHHHHHHhh
Q 041942 448 ----------------EWNRVEKVRKLMD 460 (498)
Q Consensus 448 ----------------~~~~A~~~~~~m~ 460 (498)
..++|.++++.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 272 TAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred chhhhhhhhccccccccHHHHHHHHHHHH
Confidence 2367888888883
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00057 Score=58.11 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=49.6
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCH-HHHHHH
Q 041942 317 CGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV-EEGKKY 392 (498)
Q Consensus 317 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~ 392 (498)
.+.+.+|.-+|++|.+ |++.+.+-...++...|++++|..++++...+. .-++.+...++-+-...|.. +...+.
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3456667777777764 455566666677777788888888887777753 23455555555444444543 444456
Q ss_pred HHHhHH
Q 041942 393 FKLMRD 398 (498)
Q Consensus 393 ~~~~~~ 398 (498)
+.+++.
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 666655
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.7e-05 Score=63.53 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=90.2
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCH
Q 041942 310 LIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386 (498)
Q Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 386 (498)
+-..+...|+-+....+...... .|....+..+....+.|++..|+..+++..... ++|...|+.+.-+|.+.|+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence 34444445555555555544321 234444556666666667777776666666532 34566666666666777777
Q ss_pred HHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHH
Q 041942 387 EEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
+.|..-+.+..+-.+-.|. ...|.-.|+++.|+.++..+....+.|..+-..++.+....|++++|..+...
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7776666666663333333 23333666777777777766666666777788888888888888887776543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.7e-05 Score=73.63 Aligned_cols=121 Identities=15% Similarity=0.119 Sum_probs=72.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 041942 310 LIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389 (498)
Q Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 389 (498)
|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++.++.. +-+...+......+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl-------- 245 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL-------- 245 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH--------
Confidence 33444444555555555555554444444445555555555555555555554421 112222222223333
Q ss_pred HHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 390 KKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 390 ~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
+.++++.|..+.+++.+..|++..+|..|+.+|...|++++|+..++.+.
T Consensus 246 ---------------------~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 ---------------------SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred ---------------------hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 45555666666666666789999999999999999999999999999886
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00023 Score=59.89 Aligned_cols=185 Identities=16% Similarity=0.134 Sum_probs=125.1
Q ss_pred CChHHHHHHHHHHH---hCC-CCCCHH-HHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHH
Q 041942 247 GMNKQALEMFEEMR---SVG-ERPDDV-TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIE 321 (498)
Q Consensus 247 g~~~~a~~~~~~m~---~~g-~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (498)
.+.++..+++..++ ..| ..++.. .|..++-+....|+.+.|...++.+..+.+..+.+.-+. .-.+...|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lk--am~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLK--AMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHH--HHHHHHhhchh
Confidence 45666777766665 233 445544 344555666777888888888855444442222222221 22244578888
Q ss_pred HHHHHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 322 RAIEVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 322 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+|.++++.+.+. |..++-.=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 888888887753 4556666666677778878888888777764 567888899999999999999999998888877
Q ss_pred hcCCCCChhHHH-----------hhCChHHHHHHHHHHHccCCCCCchHH
Q 041942 399 EYNIEPNIRHYG-----------VHGDVELGRLANKRLLNMRKDESGDYV 437 (498)
Q Consensus 399 ~~~~~p~~~~y~-----------~~g~~~~a~~~~~~~~~~~~~~~~~~~ 437 (498)
++|....|. -..+++-++++|.+++++.|.+...+.
T Consensus 183 ---~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 183 ---IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred ---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 566644433 444778889999999999886654433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.5e-05 Score=63.22 Aligned_cols=113 Identities=9% Similarity=0.164 Sum_probs=60.6
Q ss_pred CCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HhhcCC--HHHHH
Q 041942 318 GSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVA-CSHAGK--VEEGK 390 (498)
Q Consensus 318 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~-~~~~g~--~~~a~ 390 (498)
++.+++...++...+ .|...|..+...|...|++++|...|++..+ +.| +...+..+..+ +...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 334444444443321 2455666666666666666666666666666 334 34444444444 244454 36666
Q ss_pred HHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCch
Q 041942 391 KYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 391 ~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
+++++..+ ..|+ ...+...|++++|...|++++++.|++..-
T Consensus 131 ~~l~~al~---~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 131 EMIDKALA---LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHH---hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 66666655 3333 222336666666666666666666665443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=63.68 Aligned_cols=90 Identities=14% Similarity=0.081 Sum_probs=50.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCC
Q 041942 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448 (498)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (498)
..+...+...|++++|.+.++.+....+..|. ...|...|++++|...++++++.+|+++..+..++.+|...|+
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 33344444455555555555554441111111 2222245555555555555555667777777777777777777
Q ss_pred chHHHHHHHHhhhCC
Q 041942 449 WNRVEKVRKLMDDSD 463 (498)
Q Consensus 449 ~~~A~~~~~~m~~~~ 463 (498)
+++|+..+++..+..
T Consensus 101 ~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 101 PESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777777776654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.8e-05 Score=69.08 Aligned_cols=111 Identities=16% Similarity=0.151 Sum_probs=77.8
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCCh
Q 041942 345 LAFHGFAEESIAMFREMQRLKVRPTEITFV-GVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDV 415 (498)
Q Consensus 345 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~ 415 (498)
+...|++++|+..++.++.. .|+...|. .....+.+.++.++|.+.++++.. ..|+ ..+|.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCCh
Confidence 44567777777777777763 45544443 344667777777777777777766 4555 4455577777
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 416 ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
.+|.+.++.....+|+|+..|..|+.+|...|+..+|....-++.
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 777777777777788888888888888888777777766655554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0044 Score=58.20 Aligned_cols=416 Identities=12% Similarity=0.096 Sum_probs=246.9
Q ss_pred CcChHHHHHHHHhhhhccCCChHHHHHhcccCC--CC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 041942 34 NSDSSALRELIYSGSVVIPGAINYAHKMFVKIT--EP-DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSF 110 (498)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 110 (498)
+-|...|+.||+ -+.. ..++++++.++++. .| ....|..-|..-....+++....+|.+.+..- .+...|..
T Consensus 17 P~di~sw~~lir-e~qt--~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIR-EAQT--QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHH-HHcc--CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 678999999998 5554 49999999999997 34 46689999999999999999999999998753 45667777
Q ss_pred HHHHhhcc-cchhh----HHHHHHHH-HHhCCCCC-hHHHHHHHHH---------HHhcCChhHHHHhhccCCCCCcc--
Q 041942 111 VLKACTRL-LYRNM----GFCVHGKI-VKYGFEFN-RFVRNSLIYF---------HANCGDLNTASVLFDGDAKMDVV-- 172 (498)
Q Consensus 111 li~~~~~~-~~~~~----a~~~~~~~-~~~~~~~~-~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~-- 172 (498)
-|..--+. ++... ..+.|+-. .+.|..+. ...|+..+.. |....+++...++++++......
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 66643322 33333 23333333 34454443 3466666554 34445677778888876653222
Q ss_pred --hHHHHHH-----------HH--HhcCChHHHHHHHhcCC---------CC---Ccch---------HHHHHHHHHhcC
Q 041942 173 --AWSSLTA-----------GY--ARRGELSMARSLFDEMP---------VR---DLVS---------WNVMITGYAKQG 216 (498)
Q Consensus 173 --~~~~l~~-----------~~--~~~~~~~~A~~~~~~~~---------~~---~~~~---------~~~l~~~~~~~~ 216 (498)
.|+-... -+ -+...+-.|.++++++. .| ..-| |..+|..- +.+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksN 250 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcC
Confidence 2321110 00 12234555666655544 00 0001 22222110 000
Q ss_pred ChH---------HHHHHHhhCCC---CChhhHHHHHHHHHhCCC--------------hHHHHHHHHHHHhCCCCCCHHH
Q 041942 217 EME---------KANELFNEVPK---RDVVSWNAMISGYVLCGM--------------NKQALEMFEEMRSVGERPDDVT 270 (498)
Q Consensus 217 ~~~---------~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~--------------~~~a~~~~~~m~~~g~~p~~~~ 270 (498)
.+. ...-.+++... -.+..|.--..-+...++ .+++..+++..+..-..-+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00000000000 011122222222222233 4555566665554333334444
Q ss_pred HHHHHHHH---hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHH
Q 041942 271 MLSLLTAC---ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD-----RDVSTWSTLI 342 (498)
Q Consensus 271 ~~~li~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~ 342 (498)
|..+..-- ......+....++++........|+. +|..+++.-.+...+..|..+|.+..+ .++..+++++
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM 409 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 44333221 12223666777776666666655554 456788888888899999999998874 2677888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--hhHHH-------hhC
Q 041942 343 GGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYG-------VHG 413 (498)
Q Consensus 343 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~y~-------~~g 413 (498)
..|| .++..-|.++|+--.+. ..-++.-....+.-++..++-..+..+|+++.+ .++.|+ ...|. ..|
T Consensus 410 Ey~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~-s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 410 EYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT-SVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh-ccCChhhhHHHHHHHHHHHHhcc
Confidence 8776 67889999999875553 333445556677888899999999999999999 477777 34444 678
Q ss_pred ChHHHHHHHHHHHccCCCCC----chHHHHHHHHHhCCCchHHHHHHHHh
Q 041942 414 DVELGRLANKRLLNMRKDES----GDYVLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
++....++-++.....|.+. ..-..+++-|.-.+.+..-..-++.|
T Consensus 487 dL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred cHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 88888888888887777432 23455566666666665555555554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00023 Score=64.88 Aligned_cols=180 Identities=8% Similarity=0.041 Sum_probs=129.4
Q ss_pred hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC-CHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCH--H
Q 041942 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG-SIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFA--E 352 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~ 352 (498)
...++.++|...+.+.+...+. +...|+....++...| ++++++..++++.+ .+..+|+...-.+.+.|+. +
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3456778888888666655532 3334444445555666 57999999988774 3556777666556666653 6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHHH-------hh---CCh----HH
Q 041942 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHYG-------VH---GDV----EL 417 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~-------~~---g~~----~~ 417 (498)
+++.+++++++.+ +-|..+|.....++...|+++++.+.++++++ ..|. ...|. .. |.. ++
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~---~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE---EDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 7899999999843 23588899888899999999999999999988 2333 22222 21 222 46
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhC----CCchHHHHHHHHhhhCCC
Q 041942 418 GRLANKRLLNMRKDESGDYVLLSNIYASR----GEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~ 464 (498)
+..+..+++..+|+|..+|+.+..++... ++..+|.+.+.+..+.++
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 77888899999999999999999999884 455678888888766443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.1e-06 Score=49.71 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=28.9
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN 104 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~ 104 (498)
.+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00011 Score=62.24 Aligned_cols=147 Identities=15% Similarity=0.162 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCC
Q 041942 144 NSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGE 217 (498)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 217 (498)
..+-..+.-.|+-+....+...... .|....+..+....+.|++..|+..|++.. ++|...|+.+.-+|.+.|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 3344445555555555544443221 233333445555566666666666665555 4555556666666666666
Q ss_pred hHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 218 MEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 218 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
.+.|..-|.+..+ .+....+.+...|.-.|+.+.|..++......+ .-|...-..+.......|+++.|..+.
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666555555443 344455555555555666666666665555443 224444444555555555555555554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.8e-06 Score=48.74 Aligned_cols=33 Identities=30% Similarity=0.636 Sum_probs=26.3
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCC
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKP 103 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p 103 (498)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888777776
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00066 Score=69.34 Aligned_cols=234 Identities=11% Similarity=0.042 Sum_probs=131.0
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhh-HHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHH
Q 041942 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFT-FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145 (498)
Q Consensus 67 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 145 (498)
+.+...|..|+..+...+++++|.++.+...+. .|+... |-.+...+.+.++...+..+ .+... .+...-|+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ 101 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAI 101 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhH
Confidence 445667788888888888888888888866653 454433 32332344455554444433 22221 111111111
Q ss_pred HHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHH
Q 041942 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKAN 222 (498)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 222 (498)
+-..|...|++- .+..++..+..+|-+.|+.++|...++++. +.|+.+.|.+...|... ++++|.
T Consensus 102 ve~~~~~i~~~~-----------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 102 VEHICDKILLYG-----------ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred HHHHHHHHHhhh-----------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 111111111111 123356667777778888888888888777 55567777778878777 888887
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc
Q 041942 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302 (498)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 302 (498)
+++.+. +..|...+++.++.++|.++.... |+... .-..+.+......+..-
T Consensus 170 ~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~~--~~d~d---------------~f~~i~~ki~~~~~~~~ 221 (906)
T PRK14720 170 TYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHYN--SDDFD---------------FFLRIERKVLGHREFTR 221 (906)
T ss_pred HHHHHH-----------HHHHHhhhcchHHHHHHHHHHhcC--cccch---------------HHHHHHHHHHhhhccch
Confidence 777664 233666667777777777777552 22211 11222212222222223
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLA 346 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 346 (498)
-..++..+-..|-..++++++..+|+.+.+ .|.....-++.+|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 334445566666677777777777776653 34555556666655
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.1e-06 Score=47.38 Aligned_cols=33 Identities=39% Similarity=0.674 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 369 (498)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.3e-05 Score=59.26 Aligned_cols=82 Identities=11% Similarity=-0.005 Sum_probs=56.1
Q ss_pred HHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH--------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCch
Q 041942 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG--------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~--------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (498)
-+...|++++|..+|+.+.. +.|....|. ..|++++|...|.++..++|+|+..+..++.++...|+.+
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 34445555555555555544 344422222 5566666666777777788899999999999999999999
Q ss_pred HHHHHHHHhhhCC
Q 041942 451 RVEKVRKLMDDSD 463 (498)
Q Consensus 451 ~A~~~~~~m~~~~ 463 (498)
.|.+.|+..+...
T Consensus 121 ~A~~aF~~Ai~~~ 133 (157)
T PRK15363 121 YAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998876543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.3e-06 Score=46.72 Aligned_cols=33 Identities=30% Similarity=0.623 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 266 (498)
.+|+.++.+|++.|+++.|..+|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.05 E-value=9e-05 Score=68.90 Aligned_cols=122 Identities=12% Similarity=0.138 Sum_probs=93.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 041942 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA 151 (498)
Q Consensus 72 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (498)
.-..|+..+...++++.|+.+|+++.+.. |+ ....+++.+...++..+|.+++++.++.. +.+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666667788889999999888753 44 44456777777778888888888888653 446677777778888
Q ss_pred hcCChhHHHHhhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhcCC
Q 041942 152 NCGDLNTASVLFDGDAK--M-DVVAWSSLTAGYARRGELSMARSLFDEMP 198 (498)
Q Consensus 152 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 198 (498)
..++.+.|+.+.++... | +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88889999888887554 3 45588889999999999999998888887
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00042 Score=69.87 Aligned_cols=171 Identities=9% Similarity=0.029 Sum_probs=126.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC--CCC-cchHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHH
Q 041942 169 MDVVAWSSLTAGYARRGELSMARSLFDEMP--VRD-LVSWNVMITGYAKQGEMEKANELFNEVPK--R-DVVSWNAMISG 242 (498)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 242 (498)
.++..+..|.....+.|.+++|..+++... .|+ ......++.++.+.+++++|...+++... | +......+..+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 357778888899999999999999999888 444 45777788899999999999999998875 3 45677778888
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHH
Q 041942 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322 (498)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (498)
+...|++++|..+|+++...+ +-+..++..+..++-..|+.++|...|++.+...+ +....|+.++ +++..
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~--~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG--DGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--cchHHHHHHH------HHHHH
Confidence 999999999999999999743 34577888888999999999999999977777665 3334433332 33444
Q ss_pred HHHHHhcCCC------CC--hhHHHHHHHHHHhC
Q 041942 323 AIEVFLGMRD------RD--VSTWSTLIGGLAFH 348 (498)
Q Consensus 323 A~~~~~~~~~------~~--~~~~~~l~~~~~~~ 348 (498)
-...++++.. .+ +.+...+|..|.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 235 DLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 4556666542 12 23455566656554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.3e-05 Score=65.00 Aligned_cols=91 Identities=14% Similarity=0.220 Sum_probs=63.8
Q ss_pred HHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 041942 314 YAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEG 389 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 389 (498)
..+.+++++|+..|.+..+ .|...|..-..+|.+.|.++.|++-.+..+. +.|. ..+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence 4456777777777776553 3566677777777777777777777777776 5565 56777777777777777777
Q ss_pred HHHHHHhHHhcCCCCChhHH
Q 041942 390 KKYFKLMRDEYNIEPNIRHY 409 (498)
Q Consensus 390 ~~~~~~~~~~~~~~p~~~~y 409 (498)
++.|++..+ +.|+-..|
T Consensus 169 ~~aykKaLe---ldP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALE---LDPDNESY 185 (304)
T ss_pred HHHHHhhhc---cCCCcHHH
Confidence 777777755 67776655
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.012 Score=56.97 Aligned_cols=235 Identities=11% Similarity=0.071 Sum_probs=135.6
Q ss_pred CCCHhhHHHHHHHhhcccchhhHHHHHHHHHH-hCCCC--------ChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcc
Q 041942 102 KPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK-YGFEF--------NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV 172 (498)
Q Consensus 102 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 172 (498)
.|.+..|..+.......-.++.|+..|-+... .|++. +...-.+=+.+ --|++++|+++|-.+..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 57788888888777776777777776655543 12211 11111122222 24788888888876666553
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCC--CCC---cchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 041942 173 AWSSLTAGYARRGELSMARSLFDEMP--VRD---LVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247 (498)
Q Consensus 173 ~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 247 (498)
.+..+.+.|+|-...++++.-. ..| ...|+.+.+.+.....+++|.+.|..-... ...+.++.+..
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~le 836 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYRLE 836 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHHHH
Confidence 3456667777777777776544 111 246777777777777777777777654321 12444555555
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 041942 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327 (498)
Q Consensus 248 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (498)
++++-+.+...+ +-+....-.+...+.+.|.-++|.+.|- + .+ .| .+.+..|...++|.+|.++-
T Consensus 837 ~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~L---r-~s-~p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 837 LFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYL---R-RS-LP-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHH---h-cc-Cc-----HHHHHHHHHHHHHHHHHHHH
Confidence 555444433332 3444555666677777777777777651 1 11 11 24556677777788887777
Q ss_pred hcCCCCChhHHH--------------HHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 328 LGMRDRDVSTWS--------------TLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 328 ~~~~~~~~~~~~--------------~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
++..-|.+.+.- --|..+.+.|++-.|.+++.+|-+
T Consensus 902 q~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 902 QRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 766544332211 123345556666666666666643
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00056 Score=54.87 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=63.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc--hhhHHHH
Q 041942 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPD---DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK--VLHGNAL 310 (498)
Q Consensus 236 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 310 (498)
|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+..+... ..+. ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHH
Confidence 44444444 3666666766677666543 122 1222334455666677777777774444433 1221 1122234
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC--ChhHHHHHHHHHHhCCCHHHHHHHHHH
Q 041942 311 IDMYAKCGSIERAIEVFLGMRDR--DVSTWSTLIGGLAFHGFAEESIAMFRE 360 (498)
Q Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 360 (498)
...+...|++++|+..++.+..+ ....+.....+|...|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555566666666666554332 233444555566666666666666554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00032 Score=56.30 Aligned_cols=123 Identities=12% Similarity=0.098 Sum_probs=74.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCCCCh------hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDV------STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT--EITFVGVL 377 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~ 377 (498)
.|..++..+ ..++...+...++.+....+ ...-.+...+...|++++|...|+........|+ ......|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 36666666666666553211 2223344556667777777777777766542222 12333455
Q ss_pred HHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHH
Q 041942 378 VACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRK 457 (498)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (498)
..+...|++++|...++.... .+..+..+..++.+|...|++++|...|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~------------------------------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD------------------------------EAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC------------------------------cchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666777777766644322 23345678889999999999999999998
Q ss_pred Hh
Q 041942 458 LM 459 (498)
Q Consensus 458 ~m 459 (498)
+.
T Consensus 143 ~A 144 (145)
T PF09976_consen 143 KA 144 (145)
T ss_pred Hh
Confidence 75
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00018 Score=55.44 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHh
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV 411 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~ 411 (498)
.++..++..+...|++++|.+.|.++.... |+ ...+..+..++.+.|+++.|...++.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------- 67 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK------------- 67 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH-------------
Confidence 345666677777788888888887777632 32 23455566777777777777777777665
Q ss_pred hCChHHHHHHHHHHHccCCCC---CchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 412 HGDVELGRLANKRLLNMRKDE---SGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
..|++ +.++..++.++.+.|++++|...++++.+..
T Consensus 68 ----------------~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 68 ----------------KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred ----------------HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 23332 4557777777777777777777777777654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00028 Score=55.92 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 384 (498)
..+...+...|++++|.+.|+.+.+ .+...|..+...+...|++++|..++++..+.+ +.+...+..+...+...|
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcC
Confidence 3444555555555555555554432 234455555555555555555555555555432 223444444445555555
Q ss_pred CHHHHHHHHHHhHH
Q 041942 385 KVEEGKKYFKLMRD 398 (498)
Q Consensus 385 ~~~~a~~~~~~~~~ 398 (498)
++++|...++...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.2e-05 Score=53.04 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=49.7
Q ss_pred HHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 408 HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 408 ~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.|...|++++|...|+++++.+|+++.++..++.++...|++++|+..|+++.+..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45578899999999999999999999999999999999999999999999997644
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00021 Score=52.20 Aligned_cols=80 Identities=15% Similarity=0.033 Sum_probs=68.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCC-CCCHhhHHHHHHHhhccc--------chhhHHHHHHHHHHhCCCCChHHH
Q 041942 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSI-KPNKFTFSFVLKACTRLL--------YRNMGFCVHGKIVKYGFEFNRFVR 143 (498)
Q Consensus 73 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 143 (498)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. ++...+.+|++|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566677788999999999999999999 899999999999987652 345678899999999999999999
Q ss_pred HHHHHHHHh
Q 041942 144 NSLIYFHAN 152 (498)
Q Consensus 144 ~~l~~~~~~ 152 (498)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0011 Score=59.97 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=11.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 373 FVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+..+...+.+.|++++|.++|+++..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33344444455555555555554443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00042 Score=53.39 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHH
Q 041942 305 LHGNALIDMYAKCGSIERAIEVFLGMRD--RD----VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT----EITFV 374 (498)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~ 374 (498)
.++..++..+.+.|++++|.+.|..+.+ |+ ...+..+..++...|++++|...|+++.... |+ ...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHH
Confidence 3455678888999999999999998864 32 3467778999999999999999999998743 33 45677
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 375 GVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+..++.+.|++++|...++++.+
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHH
Confidence 777888889999999999998877
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.018 Score=55.85 Aligned_cols=322 Identities=13% Similarity=0.079 Sum_probs=160.4
Q ss_pred hHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh-CCCCCCHh--------hHHHHHHHhhcccchhhHH
Q 041942 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK-CSIKPNKF--------TFSFVLKACTRLLYRNMGF 125 (498)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~--------~~~~li~~~~~~~~~~~a~ 125 (498)
+++|.+..+. .|.+..|..|.....+.-.++.|...|-+... .|++.-.. .-..=+. +--|.+++|+
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhh
Confidence 3444444333 46666777777766666666667666655533 12211111 1111111 2237788888
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCC-----cchHHHHHHHHHhcCChHHHHHHHhcCC--
Q 041942 126 CVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD-----VVAWSSLTAGYARRGELSMARSLFDEMP-- 198 (498)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 198 (498)
+++-+|-+.++ .+..+.+.||+-.+.++++.....+ ...|+.+...+.....|++|.+.|..-.
T Consensus 755 k~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 88777765532 3556667777777777776543321 2346666666666666666666655432
Q ss_pred -----------------------CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHH
Q 041942 199 -----------------------VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255 (498)
Q Consensus 199 -----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 255 (498)
+.+....-.+.+++.+.|.-++|.+.|-+-..|. +-+..|...++|.+|.++
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666666655554444332 223445555555555555
Q ss_pred HHHHHhCCCCCCHHHHH--------------HHHHHHhccCCchHHHHHHHHHHHhhc--CCcchh-----hHHH-HHHH
Q 041942 256 FEEMRSVGERPDDVTML--------------SLLTACADLGDLEVGKKVHCTLLDMTS--GVAKVL-----HGNA-LIDM 313 (498)
Q Consensus 256 ~~~m~~~g~~p~~~~~~--------------~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~-----~~~~-l~~~ 313 (498)
-+... -|...|+. ..|..+.+.|+.-.|.+++.++.+... ..|-.. +..+ |+.-
T Consensus 901 aq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~ 976 (1189)
T KOG2041|consen 901 AQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVEN 976 (1189)
T ss_pred HHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 44332 22222211 123334455554444444434433221 112111 1111 1111
Q ss_pred H----------HhcCCHHHHHHHHhcCCC-----------CChhHHH--HHHHHHHhCCCHHHHHHHHHHHHH-CCCCCC
Q 041942 314 Y----------AKCGSIERAIEVFLGMRD-----------RDVSTWS--TLIGGLAFHGFAEESIAMFREMQR-LKVRPT 369 (498)
Q Consensus 314 ~----------~~~~~~~~A~~~~~~~~~-----------~~~~~~~--~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p~ 369 (498)
+ -+.|..++|.++++...- +....|. .|..-....|..+.|++.--.+.+ ..+-|.
T Consensus 977 h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP 1056 (1189)
T KOG2041|consen 977 HRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPP 1056 (1189)
T ss_pred HHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCH
Confidence 1 134666777766654331 1223344 344445566778877765444433 125566
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 370 EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
...|..+.-+-+....+-..-+.|-++..
T Consensus 1057 ~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1057 AEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 77777766655555555555555555444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.041 Score=55.18 Aligned_cols=208 Identities=13% Similarity=0.105 Sum_probs=103.5
Q ss_pred CCChHHHHHhcccCC--CCChhhHHHHHHHH--hccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHH
Q 041942 52 PGAINYAHKMFVKIT--EPDTFMYNTIIRGS--AQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCV 127 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 127 (498)
.+++..|.+....+. .||. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|.+.++.+++..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 355555555555544 2332 233333332 4556666666666555443322 555666666666666666666666
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHhcCChhH----HHHhhccCCCCCcchHHHHHHHHHhcCC---------hHHHHHHH
Q 041942 128 HGKIVKYGFEFNRFVRNSLIYFHANCGDLNT----ASVLFDGDAKMDVVAWSSLTAGYARRGE---------LSMARSLF 194 (498)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~ 194 (498)
|+..... .|+......+..+|++.+.+.+ |+++++...+.--.-|+.+--.+..... .--|.+.+
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 6666553 3445555555555555554433 3444443333322233322111111111 11233333
Q ss_pred hcCCCCC--cch---HHHHHHHHHhcCChHHHHHHHhh-----CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 041942 195 DEMPVRD--LVS---WNVMITGYAKQGEMEKANELFNE-----VPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263 (498)
Q Consensus 195 ~~~~~~~--~~~---~~~l~~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 263 (498)
+.+...+ ..+ ...-...+...|++++|++++.. ....+...-+.-+..+...++|.+..++-.++...|
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 3333111 110 11112334567778888887732 122344444556777778888888888888888775
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.4e-05 Score=43.66 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=23.9
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCC
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSI 101 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 101 (498)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00054 Score=56.84 Aligned_cols=123 Identities=11% Similarity=0.050 Sum_probs=84.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMRD--RD----VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLV 378 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~ 378 (498)
.+..+...+...|++++|...|++..+ ++ ...+..+...+...|++++|...+++..+ ..|+ ...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 344555566666777777776665542 21 34677788888889999999999998888 4454 556666677
Q ss_pred HHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCC
Q 041942 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (498)
.+...|+...+..-++.... .+++|.+.+++++..+|++ +..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~---------------~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA---------------LFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH---------------HHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 77787877766665555443 3677888999999888887 5555555555554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0085 Score=54.19 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHhccCCchHHHHHHHHHHHhhc-CC--cchh
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGER-----PDDV-TMLSLLTACADLGDLEVGKKVHCTLLDMTS-GV--AKVL 305 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~ 305 (498)
++..+...+.+.|++++|..+|++....-.. .+.. .+...+-++...|+.-.|...+++.....+ +. ....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4556778888999999999999988754322 1221 233344456677888888888866554432 22 2234
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHhcCCCCChhHHHHHH
Q 041942 306 HGNALIDMYAK--CGSIERAIEVFLGMRDRDVSTWSTLI 342 (498)
Q Consensus 306 ~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~l~ 342 (498)
+...|+.++-. ...++.|+.-|+.+.+-|..--..|+
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 44556666654 34577888888888777665444444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.3e-05 Score=65.00 Aligned_cols=104 Identities=20% Similarity=0.173 Sum_probs=84.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHH-------Hhh
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHY-------GVH 412 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y-------~~~ 412 (498)
..-+.+.++|++|+..|.++++ +.|+ .+-|..=..+|++.|.++.|++-.+..+. +.|. ...| ...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 3456778899999999999999 6664 66677778899999999999998888877 7777 3344 477
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCch
Q 041942 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (498)
|++++|.+.|+++++++|++...+..|-.+--+.++..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999988888877766666555
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0028 Score=53.64 Aligned_cols=182 Identities=14% Similarity=0.071 Sum_probs=128.1
Q ss_pred CCchHHHHHHHHHHHhhc---CCcch-hhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHH---HHHHHHHhCCCHHHH
Q 041942 282 GDLEVGKKVHCTLLDMTS---GVAKV-LHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWS---TLIGGLAFHGFAEES 354 (498)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~---~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~A 354 (498)
.+.++..+++.++....+ ..++. ..|..++-+....|+.+.|...++.+...-+.++. .-...+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 345555555544433222 22232 23445555667789999999998887642222211 112234457899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccC
Q 041942 355 IAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMR 429 (498)
Q Consensus 355 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~ 429 (498)
+++|+...+.+ +.|..++..=+...-..|+.-+|++-+....+.+--.++ .+.|...|++++|.-.+++++=..
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 99999999865 445677776666667788888898888887775444443 666779999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCC---CchHHHHHHHHhhhCCC
Q 041942 430 KDESGDYVLLSNIYASRG---EWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~ 464 (498)
|-++..+..++..+.-.| +..-|.++|.+..+...
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999999987776 56678888988877655
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00029 Score=61.39 Aligned_cols=105 Identities=13% Similarity=0.074 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-------hhHHH-hhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-------IRHYG-VHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~y~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
|...|..|...|...|+.+.|...|....+..|-+|+ +.+|. ....-.++..++++++.++|.|..+...|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4667777777777777777777777777664444444 11222 222456788899999999999999999999
Q ss_pred HHHHhCCCchHHHHHHHHhhhCCCccCCceeEE
Q 041942 441 NIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473 (498)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 473 (498)
..+...|++.+|...++.|.+....-.|..+.|
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 999999999999999999999877555555443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00027 Score=51.68 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCCh
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV 415 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~ 415 (498)
++..+...+...|++++|...++++.+. .|+ ...+..+...+...|++++|.+.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------------------- 60 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKA------------------- 60 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 3556667777778888888888887763 343 344555555555555555555555554
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 416 ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
....|.+..++..++.++...|++++|...+++..+.+
T Consensus 61 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 61 ----------LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred ----------HhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 44566666788899999999999999999998876543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=5e-05 Score=54.37 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHH
Q 041942 348 HGFAEESIAMFREMQRLKVR-PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLL 426 (498)
Q Consensus 348 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~ 426 (498)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..++++ .+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---------------------------- 52 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---------------------------- 52 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT----------------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC----------------------------
Confidence 46778888888888774321 1334455567777888888888777766 22
Q ss_pred ccCCCCCchHHHHHHHHHhCCCchHHHHHHHH
Q 041942 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
.+|.+......++.++.+.|++++|++++++
T Consensus 53 -~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 53 -LDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp -HHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 1233344455668888888888888888775
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.4e-05 Score=52.65 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=48.5
Q ss_pred hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
..|++++|.+.|+++++.+|++..++..++.+|.+.|++++|..+++++.....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 468899999999999999999999999999999999999999999999877544
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.2e-05 Score=42.21 Aligned_cols=31 Identities=48% Similarity=0.814 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGE 264 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 264 (498)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00027 Score=66.03 Aligned_cols=99 Identities=9% Similarity=0.024 Sum_probs=82.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHh
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGV 411 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~ 411 (498)
-...+...|++++|+..|+++++. .| +...|..+..++.+.|++++|...+++++. +.|+ ...|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 455677889999999999999984 45 477888888999999999999999999988 5665 334448
Q ss_pred hCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 041942 412 HGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (498)
.|++++|...|+++++++|+++.+...+..+..
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 899999999999999999999887777655543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00077 Score=62.98 Aligned_cols=91 Identities=11% Similarity=0.104 Sum_probs=78.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCC
Q 041942 310 LIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGK 385 (498)
Q Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 385 (498)
-...+...|++++|++.|++..+ .+...|..+..+|...|++++|+..++++++ +.| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCC
Confidence 45567788999999999998874 3677888999999999999999999999999 456 47788888899999999
Q ss_pred HHHHHHHHHHhHHhcCCCCC
Q 041942 386 VEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~ 405 (498)
+++|...+++..+ +.|+
T Consensus 86 ~~eA~~~~~~al~---l~P~ 102 (356)
T PLN03088 86 YQTAKAALEKGAS---LAPG 102 (356)
T ss_pred HHHHHHHHHHHHH---hCCC
Confidence 9999999999988 5565
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.042 Score=50.13 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=88.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 385 (498)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-.++-.. +-++.-|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3445566777889999999999999999999999999999999999987776432 2345888999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHH
Q 041942 386 VEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKR 424 (498)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~ 424 (498)
..+|..++.++.. ..-+..|.++|++.+|.+..-+
T Consensus 253 ~~eA~~yI~k~~~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKIPD----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhCCh----HHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999887421 3348889999999999766544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0016 Score=53.74 Aligned_cols=105 Identities=10% Similarity=0.063 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRD--RD----VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGV 376 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l 376 (498)
...+..+...+...|++++|...|++... ++ ..+|..+...+...|++++|+..+++... +.|+ ..++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence 44445566666677777777777766532 22 24677778888888888888888888877 3443 4445555
Q ss_pred HHHHh-------hcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCC
Q 041942 377 LVACS-------HAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDE 432 (498)
Q Consensus 377 ~~~~~-------~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~ 432 (498)
...+. ..|+++.|...+ ++|...+++++..+|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~----------------------~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWF----------------------DQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHH----------------------HHHHHHHHHHHHhCccc
Confidence 55555 444444444333 34555777777777765
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00049 Score=64.40 Aligned_cols=120 Identities=11% Similarity=0.075 Sum_probs=83.6
Q ss_pred cCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC-CCC-----hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH
Q 041942 32 GFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT-EPD-----TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNK 105 (498)
Q Consensus 32 ~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~-~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 105 (498)
+...++.....++. .... ..+++++..++-+.. .|+ ..+.+++++.|...|..+.++.+++.=...|+-||.
T Consensus 61 ~~~vS~~dld~fvn-~~~~-~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 61 KKPVSSLDLDIFVN-NVES-KDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCCCcHHHHHHHHh-hcCC-HhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 34555666666666 5555 566677777666654 222 235567888888888888888888888888888888
Q ss_pred hhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhc
Q 041942 106 FTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC 153 (498)
Q Consensus 106 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (498)
.+++.||..+.+.|++..|.++...|...+...+..++...+.++.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888777766666666665555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0019 Score=54.81 Aligned_cols=131 Identities=10% Similarity=-0.009 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----------
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN---------- 405 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---------- 405 (498)
..-+.++..+...|.+.-.+..+++.++..-+.++.....|.+.-.+.|+.+.|...|+.+.+..+.-.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4556677788888899999999999998665557888888999999999999999999977663222111
Q ss_pred -hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCcc
Q 041942 406 -IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKK 466 (498)
Q Consensus 406 -~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 466 (498)
...|.-..++.+|.+.+.+++..+|.++.+.+.-+-++.-.|+..+|++.++.|......|
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3334467789999999999999999999999999888888999999999999998876554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0023 Score=50.58 Aligned_cols=96 Identities=10% Similarity=-0.032 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 384 (498)
-.+...+...|++++|..+|+.+.. | +..-|..|..++-..|++.+|+..|......+ +-|+..+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3455566778888888888876653 3 56677788888888888999999888888843 234778888888888888
Q ss_pred CHHHHHHHHHHhHHhcCCCC
Q 041942 385 KVEEGKKYFKLMRDEYNIEP 404 (498)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~p 404 (498)
+.+.|++.|+..+...+-.|
T Consensus 118 ~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 118 NVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CHHHHHHHHHHHHHHhccCh
Confidence 98888888888877433333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0002 Score=49.60 Aligned_cols=58 Identities=12% Similarity=0.053 Sum_probs=52.2
Q ss_pred HHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 408 HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 408 ~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
.|...+++++|..++++++.++|+++..|...+.++...|++++|.+.+++..+.+..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 4667889999999999999999999999999999999999999999999999876653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.6e-05 Score=51.08 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=46.5
Q ss_pred HHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC-CchHHHHHHHHhhhC
Q 041942 409 YGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG-EWNRVEKVRKLMDDS 462 (498)
Q Consensus 409 y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 462 (498)
|...|++++|...|+++++.+|+++.+|..++.+|...| ++++|++.+++..+.
T Consensus 13 ~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 13 YFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 346677788888888888889999999999999999999 799999999998763
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=6e-05 Score=42.76 Aligned_cols=33 Identities=18% Similarity=0.482 Sum_probs=30.9
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhCCCchHHHH
Q 041942 422 NKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00035 Score=49.97 Aligned_cols=18 Identities=28% Similarity=0.159 Sum_probs=7.3
Q ss_pred HHHHHhCCCHHHHHHHHH
Q 041942 342 IGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~ 359 (498)
..+|...|++++|++.++
T Consensus 65 a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHh
Confidence 344444444444444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0017 Score=58.80 Aligned_cols=157 Identities=14% Similarity=0.070 Sum_probs=83.9
Q ss_pred HHHHHHHH-HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHH-----HHH
Q 041942 268 DVTMLSLL-TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTW-----STL 341 (498)
Q Consensus 268 ~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~l 341 (498)
-.++..+- .++.-.|+.++|.++--..++......+... .-..++.-.++.+.|...|++...-++... ...
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~--vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY--VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM 245 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH--hcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence 34444332 3445667777777665344433322221111 111223345677777777777665333221 122
Q ss_pred HHH----------HHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-
Q 041942 342 IGG----------LAFHGFAEESIAMFREMQRLKVRPT-----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN- 405 (498)
Q Consensus 342 ~~~----------~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~- 405 (498)
... ..+.|++..|.+.|.+.+. +.|+ ...|........+.|+..+|+.--+...+ +.|.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~sy 320 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSY 320 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHH
Confidence 221 2345677777777777766 4443 33455555566677777777776666654 5554
Q ss_pred -------hhHHHhhCChHHHHHHHHHHHccCCC
Q 041942 406 -------IRHYGVHGDVELGRLANKRLLNMRKD 431 (498)
Q Consensus 406 -------~~~y~~~g~~~~a~~~~~~~~~~~~~ 431 (498)
...|...+++++|++.|+++.+...+
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33333566677777777777765544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00094 Score=55.36 Aligned_cols=97 Identities=7% Similarity=0.059 Sum_probs=77.1
Q ss_pred HHhcccC--CCCChhhHHHHHHHHhc-----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcc-------------
Q 041942 59 HKMFVKI--TEPDTFMYNTIIRGSAQ-----SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL------------- 118 (498)
Q Consensus 59 ~~~~~~~--~~~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~------------- 118 (498)
...|++. ...+-.+|..+++.|.+ .|.++=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 36677788888888754 477888888899999999999999999999987542
Q ss_pred ---cchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCC
Q 041942 119 ---LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155 (498)
Q Consensus 119 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 155 (498)
.+-+-|.+++++|...|+-||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 3455678999999999999999999999999877665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0044 Score=60.63 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=88.7
Q ss_pred CChhHHHHHHHHHHh--CC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhc--------CCHHHHHHHHHHhHH
Q 041942 333 RDVSTWSTLIGGLAF--HG---FAEESIAMFREMQRLKVRPT-EITFVGVLVACSHA--------GKVEEGKKYFKLMRD 398 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~--~~---~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 398 (498)
.|...|...+++... .+ +...|..+|++.++ ..|+ ...+..+..++... ++...+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 477788887776443 22 36789999999998 6687 44555444433221 123344444444333
Q ss_pred hcCCCC-ChhHHH-------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 399 EYNIEP-NIRHYG-------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 399 ~~~~~p-~~~~y~-------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
....| +...|. ..|++++|...++++++++| +..+|..++.++...|++++|.+.|++....+..
T Consensus 413 -l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 413 -LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred -cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 11122 222222 67999999999999999999 5789999999999999999999999999876654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0011 Score=48.38 Aligned_cols=92 Identities=11% Similarity=-0.065 Sum_probs=61.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHh
Q 041942 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHAN 152 (498)
Q Consensus 73 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (498)
|..+...+...|++++|...++...+.. +.+...+..+..++...++++.|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556666677788888888888776642 2334556666666777777888888777777654 3344566667777777
Q ss_pred cCChhHHHHhhccC
Q 041942 153 CGDLNTASVLFDGD 166 (498)
Q Consensus 153 ~g~~~~A~~~~~~~ 166 (498)
.|+++.|...++..
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 77777777666543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.15 Score=50.35 Aligned_cols=100 Identities=9% Similarity=0.042 Sum_probs=60.2
Q ss_pred hCCCCCCHhhHHHH-----HHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCh---hHHHHhhccCCC-
Q 041942 98 KCSIKPNKFTFSFV-----LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL---NTASVLFDGDAK- 168 (498)
Q Consensus 98 ~~~~~p~~~~~~~l-----i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~- 168 (498)
.-|++.+..-|..+ |.-+...+.+..|.++-..+...-..- ..+|.....-+.+..+. +-+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 34666666666544 444556677777777776664321111 56666676666666332 222333333333
Q ss_pred -CCcchHHHHHHHHHhcCChHHHHHHHhcCC
Q 041942 169 -MDVVAWSSLTAGYARRGELSMARSLFDEMP 198 (498)
Q Consensus 169 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 198 (498)
....+|..+..-....|+.+.|..+++.=.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~ 534 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEP 534 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCC
Confidence 455678888888888888888888876543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.013 Score=51.36 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=45.6
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDES---GDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
...|.+.|.+..|..-++.+++.-|+.+ .+...++.+|...|..++|..+.+.+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3345588999999999999998888765 577888999999999999998877664
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.1 Score=48.34 Aligned_cols=121 Identities=12% Similarity=0.104 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH----
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG---- 410 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~---- 410 (498)
..|...+..-.+....+.|..+|-++.+.| +.++...++.++.-++ .|+...|..+|+.-...+ ||...|.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHH
Confidence 456666776667777777888888877777 4566777777776554 367777777777765533 3322332
Q ss_pred ----hhCChHHHHHHHHHHHccCCCC--CchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 411 ----VHGDVELGRLANKRLLNMRKDE--SGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 411 ----~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
..++-+.|+.+|+..++.-.++ ..+|..++.--..-|+...|..+=++|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 6677777777777666433333 4567777777777777766665555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0045 Score=47.16 Aligned_cols=108 Identities=12% Similarity=0.097 Sum_probs=67.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc-chhhHHHHHHHH
Q 041942 238 AMISGYVLCGMNKQALEMFEEMRSVGERPD--DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-KVLHGNALIDMY 314 (498)
Q Consensus 238 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 314 (498)
.+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..++++.....+..+ +......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 456677788999999999999988886654 33556677788888999999998866665543211 122222233455
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHH
Q 041942 315 AKCGSIERAIEVFLGMRDRDVSTWSTLIGGL 345 (498)
Q Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 345 (498)
...|+.++|++.+-....++...|..-|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777766544333333444433333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0018 Score=49.27 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=64.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHH
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPT--EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVEL 417 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~ 417 (498)
.+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++.....+ |+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~------------ 70 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PD------------ 70 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CC------------
Confidence 345567778899999999999888876654 3456666778888888888888888776631 22
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 418 GRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
++.+......++.++...|++++|++.+-...
T Consensus 71 -----------~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 71 -----------DELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred -----------ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 01133445555667777777777777665443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.029 Score=45.28 Aligned_cols=131 Identities=13% Similarity=0.033 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHH
Q 041942 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD-----RDVSTWS 339 (498)
Q Consensus 265 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~ 339 (498)
.|+...-..|..++...|+..+|...| +........-|....-.+.++....+++.+|...++.+-+ ..+.+--
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy-~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHY-QQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHH-HHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 566666666667777777777777777 3333444455666666666666777777777777766553 1334455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+.+.|...|++.+|...|+.... .-|+...-......+.++|+.+++..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 566778888888888888888887 456655444445555677766666554444433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.022 Score=54.77 Aligned_cols=205 Identities=11% Similarity=0.044 Sum_probs=101.9
Q ss_pred hhhccCCChHHHHHhcccCCC-----------CChhhHHHHHHHHhccCC--hHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 041942 47 GSVVIPGAINYAHKMFVKITE-----------PDTFMYNTIIRGSAQSQN--PLDAVFLYTQMEKCSIKPNKFTFSFVLK 113 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~ll~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~ 113 (498)
-|.. .|.+++|.++---... -+...++..=.+|.+..+ +-+.+.-+++|+++|-.|+... +..
T Consensus 565 q~Ie-ag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~ 640 (1081)
T KOG1538|consen 565 QYIE-RGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LAD 640 (1081)
T ss_pred hhhh-ccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHH
Confidence 3444 6777777665433221 112223333444544433 3344445566666766666533 234
Q ss_pred HhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC--------------CcchHHHHHH
Q 041942 114 ACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM--------------DVVAWSSLTA 179 (498)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~~l~~ 179 (498)
.|+-.|++.+|.++|.+ .|.+ +..+.+|.....++.|.+++...... +..--.+...
T Consensus 641 ~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAE 711 (1081)
T KOG1538|consen 641 VFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAE 711 (1081)
T ss_pred HHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHH
Confidence 45666777777666643 2322 23344455555555555554332110 1111111222
Q ss_pred HHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 041942 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259 (498)
Q Consensus 180 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 259 (498)
.+...|+.++|.. .....|-.+-+.++-.++...+..+...+..-+.+...+.-|-++|..|
T Consensus 712 mLiSaGe~~KAi~------------------i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 712 MLISAGEHVKAIE------------------ICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred Hhhcccchhhhhh------------------hhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 2333333333332 2334444555555555555555556666666666666677777777766
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 260 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
-. ...+++.....++|.+|..+-
T Consensus 774 gD---------~ksiVqlHve~~~W~eAFalA 796 (1081)
T KOG1538|consen 774 GD---------LKSLVQLHVETQRWDEAFALA 796 (1081)
T ss_pred cc---------HHHHhhheeecccchHhHhhh
Confidence 42 234556666777777777665
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0055 Score=57.57 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=82.4
Q ss_pred CCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhc-CCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhH
Q 041942 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS-GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD----RDVST 337 (498)
Q Consensus 263 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~ 337 (498)
+.+.+...+..++..+....+++.+..++-+...... ...-..+..++++.|.+.|..++++.++..=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3455666777777777777777777777634333221 122344446778888888888888877765443 67788
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA 383 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 383 (498)
+|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877776666677777666666654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.034 Score=44.90 Aligned_cols=126 Identities=11% Similarity=0.095 Sum_probs=93.2
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHh--cCCCCC-----
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE--YNIEPN----- 405 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~p~----- 405 (498)
|.+..--.|..++.+.|++.+|...|.+....-+.-|......+.++....+++..|...++.+-+. .+-.||
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 3444555677888888999999998888877555667888888888888889998888888887662 123444
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHh
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
..+|...|.+.+|+..|+.++.-.|+ +.....+...+.++|+.++|..-+..+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 55666888888899999988876654 455666677788888777766544444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0039 Score=51.66 Aligned_cols=89 Identities=10% Similarity=0.024 Sum_probs=59.3
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHH
Q 041942 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN--KFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147 (498)
Q Consensus 70 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 147 (498)
...|..+...+...|++++|...|++..+....+. ...+..+...+.+.|+++.|...+.+..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34566677777778888888888888765432222 3466677777778888888888888877753 23455566666
Q ss_pred HHHHhcCChhHH
Q 041942 148 YFHANCGDLNTA 159 (498)
Q Consensus 148 ~~~~~~g~~~~A 159 (498)
.++...|+...+
T Consensus 114 ~~~~~~g~~~~a 125 (172)
T PRK02603 114 VIYHKRGEKAEE 125 (172)
T ss_pred HHHHHcCChHhH
Confidence 677666664443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0026 Score=52.55 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhh
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT--EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVH 412 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~ 412 (498)
...|..++..+...|++++|+..|++.......|. ..++..+...+...|++++|...+++...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~-------------- 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE-------------- 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------
Confidence 34566677777777778888887777766322221 23555566666666666666666665554
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHHHH-------hCCCchHHHHHHHHh
Q 041942 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYA-------SRGEWNRVEKVRKLM 459 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~m 459 (498)
++|.....+..++.++. ..|++++|+..+++.
T Consensus 101 ---------------~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 101 ---------------RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred ---------------hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 44555555666666666 778877665555543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0013 Score=44.92 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC-CHHHHHHHHHHhHH
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAG-KVEEGKKYFKLMRD 398 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 398 (498)
+..+|..+...+...|++++|+..|++.++ +.|+ ...|..+..++...| ++++|.+.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456788888899999999999999999988 4564 667778888888888 68899888888776
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0023 Score=57.64 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041942 305 LHGNALIDMYAKCGSIERAIEVFLGMRDRD---VSTWSTLIGG-LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380 (498)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~-~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 380 (498)
.+|..++...-+.+..+.|..+|.+..+.. ...|-..... |...++.+.|.++|+...+. +..+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 357778888888888999999998877542 3344433333 33356777799999988874 455677788888888
Q ss_pred hhcCCHHHHHHHHHHhHHhcCCCC-ChhHHH-------hhCChHHHHHHHHHHHccCCCCC
Q 041942 381 SHAGKVEEGKKYFKLMRDEYNIEP-NIRHYG-------VHGDVELGRLANKRLLNMRKDES 433 (498)
Q Consensus 381 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~y~-------~~g~~~~a~~~~~~~~~~~~~~~ 433 (498)
.+.|+.+.|+.+|++.....+-.. ....|. +.|+++...++.+++.+..|++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 888999999999999877311111 112232 77778888888877777776643
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.15 Score=46.68 Aligned_cols=106 Identities=14% Similarity=0.218 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHH
Q 041942 173 AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252 (498)
Q Consensus 173 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 252 (498)
+.+..+.-+...|+...|.++-.+...|+-..|-..+.+++..++|++-.++... +.++.-|...+.+|.+.|+..+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHH
Confidence 4445566666777777777777777777777777777777777777777765543 44567777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHH
Q 041942 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290 (498)
Q Consensus 253 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 290 (498)
..++..+ + +..-+..|.+.|++.+|.+.
T Consensus 257 ~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 257 SKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 7766652 1 23345556666777666554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0098 Score=53.58 Aligned_cols=139 Identities=13% Similarity=0.044 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA-CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++..+ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 356777777777777888888888887543 2233333333333 3334666678888866666543 45566677778
Q ss_pred HHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041942 313 MYAKCGSIERAIEVFLGMRDR------DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377 (498)
Q Consensus 313 ~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 377 (498)
.+.+.|+.+.|..+|++.... -...|...+..=.+.|+.+.+.++.+++.+ .-|+...+..++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~ 147 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFS 147 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHH
Confidence 888888888888888776642 234777777777777888888888887777 445544443333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.15 Score=46.69 Aligned_cols=154 Identities=13% Similarity=0.053 Sum_probs=87.4
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChh-hHHHHH--HHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH------------
Q 041942 210 TGYAKQGEMEKANELFNEVPKRDVV-SWNAMI--SGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL------------ 274 (498)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~--~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l------------ 274 (498)
.++.-.|+.++|...--.+.+.|.. .+..++ .++-..++.+.+...|.+-+..+ |+...-...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHh
Confidence 3455667777776666555543332 222222 23334566677777777666542 333221111
Q ss_pred -HHHHhccCCchHHHHHHHHHHHhh--cCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHHHHHHhC
Q 041942 275 -LTACADLGDLEVGKKVHCTLLDMT--SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS---TWSTLIGGLAFH 348 (498)
Q Consensus 275 -i~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~ 348 (498)
..-..+.|++..|.+.|.+.+... +..++...|........+.|+..+|+.--+....-|.. .|..-..++...
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 112346677788877775554332 23344555555555666778888888777776665543 344444556667
Q ss_pred CCHHHHHHHHHHHHHCC
Q 041942 349 GFAEESIAMFREMQRLK 365 (498)
Q Consensus 349 ~~~~~A~~~~~~m~~~~ 365 (498)
++|++|++-++...+..
T Consensus 335 e~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 78888888887776643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.031 Score=49.02 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=44.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQRL--KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+...|.+.|.+..|+.-++.+++. +.+........+..+|...|..++|..+...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 4566788889999999999998874 2223456677788899999999999888776543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.16 Score=46.25 Aligned_cols=275 Identities=14% Similarity=0.083 Sum_probs=161.3
Q ss_pred ccchhhHHHHHHHHHHhCCCCChHHHHHHHHH--HHhcCChhHHHHhhccCCCCCcch----HHHHHHHHHhcCChHHHH
Q 041942 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYF--HANCGDLNTASVLFDGDAKMDVVA----WSSLTAGYARRGELSMAR 191 (498)
Q Consensus 118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~ 191 (498)
.|+-..|.++-.+..+. +..|......|+.+ -.-.|+++.|.+-|+.|.. |+.+ ...|.-.--+.|..+.|.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 35555555555444321 12233333333322 2335777777777777664 2222 112222234567777777
Q ss_pred HHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCC-----CCChh--hHHHHHH----HHHhCCChHHHHHHHH
Q 041942 192 SLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVP-----KRDVV--SWNAMIS----GYVLCGMNKQALEMFE 257 (498)
Q Consensus 192 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~--~~~~l~~----~~~~~g~~~~a~~~~~ 257 (498)
.+-++.- +.-.-.+...+...+..|+++.|+++++.-. +++.. .-..|+. ... ..+...|...-.
T Consensus 175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHH
Confidence 7666655 2223466677777788888888888776544 23332 1111221 111 123444554444
Q ss_pred HHHhCCCCCCHHH-HHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHH----HHHHhcCCC
Q 041942 258 EMRSVGERPDDVT-MLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA----IEVFLGMRD 332 (498)
Q Consensus 258 ~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A----~~~~~~~~~ 332 (498)
+..+ +.||-.- -.....++.+.|+..++-.++ +-+-+....|+ ++ ++..+.+.|+.... .+-+..|+.
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il-E~aWK~ePHP~--ia--~lY~~ar~gdta~dRlkRa~~L~slk~ 326 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL-ETAWKAEPHPD--IA--LLYVRARSGDTALDRLKRAKKLESLKP 326 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHH-HHHHhcCCChH--HH--HHHHHhcCCCcHHHHHHHHHHHHhcCc
Confidence 4333 3454332 223456788999999999998 44444433343 32 33345566663322 234567777
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACS-HAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
.|..+...+..+-...|++..|..--+...+ ..|....|..|...-. ..|+-.++...+.+..+ .+-.|.
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~-APrdPa 397 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK-APRDPA 397 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc-CCCCCc
Confidence 7888888889999999999988877777666 6788888888876544 45999999999999888 666665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0059 Score=54.02 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE----ITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.|...+..+.+.|++++|+..|+.+++. .|+. ..+..+..+|...|++++|...|+.+.+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444445567777777777777763 3432 3555566666677777777777766665
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.32 Score=49.19 Aligned_cols=207 Identities=13% Similarity=0.013 Sum_probs=120.9
Q ss_pred hchhhhHHHH-HHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHH
Q 041942 16 TNLRTLKQIQ-ALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVF 91 (498)
Q Consensus 16 ~~~~~a~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~ 91 (498)
++.+.|.+-. ..+.+++-.+-..++..+. ..+ .|+.++|..+++... ..|..+...+-..|...++.++|..
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLs---l~r-~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALS---LFR-LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHH---HHH-hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 3445554433 3445554444444444443 345 789999998888775 4467788888888999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcC-C---------hhHHHH
Q 041942 92 LYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCG-D---------LNTASV 161 (498)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A~~ 161 (498)
+|+...+. .|+..-...+..++.|.+++..-.+.--++-+. ++-+...+=++++.+...- . ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99999874 677888888888899888777655555444442 2333333333444433321 1 122334
Q ss_pred hhccCCCCC--cch---HHHHHHHHHhcCChHHHHHHHhcCC-----CCCcchHHHHHHHHHhcCChHHHHHHHhhCC
Q 041942 162 LFDGDAKMD--VVA---WSSLTAGYARRGELSMARSLFDEMP-----VRDLVSWNVMITGYAKQGEMEKANELFNEVP 229 (498)
Q Consensus 162 ~~~~~~~~~--~~~---~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 229 (498)
.++.+.+.+ ..+ ...-...+...|++++|..++..-. .-+...-+.-+..+...+++.+..++-.++.
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 444443322 111 1122334556778888888873222 2222333344555666666666555555444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0079 Score=53.20 Aligned_cols=95 Identities=7% Similarity=0.060 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCC---C-----hhHHHhhCChHHHHHHHHHHHccCCCCC---chHHH
Q 041942 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP---N-----IRHYGVHGDVELGRLANKRLLNMRKDES---GDYVL 438 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p---~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~ 438 (498)
...|...+....+.|++++|...|+.+++.++-.+ + ...|...|++++|...|+++++..|+++ .++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34565555555777999999999999988543332 2 3455599999999999999999888864 56677
Q ss_pred HHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 439 LSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
++.++...|++++|..+|+++.+...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 78899999999999999999987543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0035 Score=42.08 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=39.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+...+...|++++|...|+++++.. | +...+..+..++...|++++|...++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677777888888888777743 5 356666677777777777777777777766
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.052 Score=53.32 Aligned_cols=71 Identities=8% Similarity=0.062 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHH
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHY 409 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y 409 (498)
+...|..+...+...|++++|...++++.+ +.|+...|..+...+...|+.++|.+.+++... +.|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~---L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN---LRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCchH
Confidence 445666666666667777777777777777 446666777777777777777777777777655 45554444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.1 Score=44.70 Aligned_cols=169 Identities=10% Similarity=0.025 Sum_probs=113.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC----------CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041942 205 WNVMITGYAKQGEMEKANELFNEVPK----------RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL 274 (498)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 274 (498)
++.|.+.+.-..-+++-...++.-.. +-....+.++..+...|.+.-.+..+++.++...+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 44454444444444444444443322 22345566777778889999999999999988767788888889
Q ss_pred HHHHhccCCchHHHHHHHHHHHhhcCCcchhhHH-----HHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHH
Q 041942 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN-----ALIDMYAKCGSIERAIEVFLGMRDR---DVSTWSTLIGGLA 346 (498)
Q Consensus 275 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 346 (498)
.+.-.+.|+.+.|..+|+...+.. ...+-..++ .....|.-++++..|...+.++... |+..-|.-.-+..
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHH-hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 999999999999999995433332 233333333 3334566678899999999887753 5555565555566
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041942 347 FHGFAEESIAMFREMQRLKVRPTEITFVGV 376 (498)
Q Consensus 347 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 376 (498)
-.|+..+|++.++.|+. ..|...+-+++
T Consensus 298 Ylg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 67899999999999988 45655544433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0049 Score=55.89 Aligned_cols=127 Identities=15% Similarity=0.051 Sum_probs=64.8
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHH---hhcCC-cchhhHHHHHHHHHhcCCHHHHHHHHhcCC-------CC--ChhH
Q 041942 271 MLSLLTACADLGDLEVGKKVHCTLLD---MTSGV-AKVLHGNALIDMYAKCGSIERAIEVFLGMR-------DR--DVST 337 (498)
Q Consensus 271 ~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~--~~~~ 337 (498)
|..|...|.-.|+++.|+...+..+. +.|.. .....+..|..++.-.|+++.|.+.|+... .+ ...+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 44444455555666666655433222 11111 112333445556666666666666555322 12 2234
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRL----K-VRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
...|...|.-..++++|+.++.+-..- + ..-....+.+|..++...|..++|..+.+.-.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455666666666667776666553321 0 11234566667777777777666666555443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.014 Score=42.86 Aligned_cols=81 Identities=11% Similarity=-0.070 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCC--------chHHHHHHHHHHHhhcCCcchh
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDDVTMLSLLTACADLGD--------LEVGKKVHCTLLDMTSGVAKVL 305 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~ 305 (498)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- .-....+| +-+...+.+|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvY-qDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVY-QDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHH-HHHHHhccCCcHH
Confidence 344556666677999999999999999999 8899999999988765432 33455566 3334566777777
Q ss_pred hHHHHHHHHHh
Q 041942 306 HGNALIDMYAK 316 (498)
Q Consensus 306 ~~~~l~~~~~~ 316 (498)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 77777766554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.32 Score=45.27 Aligned_cols=431 Identities=10% Similarity=0.056 Sum_probs=202.0
Q ss_pred HHHHhhchhhhHHHHHHHHHhcCCc-----ChHHHHHHHHhhhhccCCChHHHHHhcccCC--CCChhhHHHHHHHH--h
Q 041942 11 LWKKCTNLRTLKQIQALVTINGFNS-----DSSALRELIYSGSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGS--A 81 (498)
Q Consensus 11 ~l~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~--~ 81 (498)
+|..-++...+..++..+.+..-.. .....+.+|. +|- .++++.....+.... .| ...|-.+..++ -
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~griln-Aff--l~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILN-AFF--LNNLDLMEKQLMELRQQFG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHH-HHH--HhhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3444456667777777765542111 1334456666 444 256666555555544 23 33455555443 4
Q ss_pred ccCChHHHHHHHHHHHhC--CCCC------------CHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCC----CChHHH
Q 041942 82 QSQNPLDAVFLYTQMEKC--SIKP------------NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE----FNRFVR 143 (498)
Q Consensus 82 ~~g~~~~A~~~~~~m~~~--~~~p------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ 143 (498)
+.+.+..|++.+..-..+ +..| |...=++.+.++...|.+.+++.+++++...=++ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678888888877766543 2222 2222245566777888888888888887764333 677788
Q ss_pred HHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHh-----cCCh
Q 041942 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAK-----QGEM 218 (498)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~ 218 (498)
+.++-+++++=-++.-. .+...=..-|..++..|.+.=..-++. -+++. .|.......++....- .--+
T Consensus 171 d~~vlmlsrSYfLEl~e----~~s~dl~pdyYemilfY~kki~~~d~~-~Y~k~-~peeeL~s~imqhlfi~p~e~l~~~ 244 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKE----SMSSDLYPDYYEMILFYLKKIHAFDQR-PYEKF-IPEEELFSTIMQHLFIVPKERLPPL 244 (549)
T ss_pred HHHHHHHhHHHHHHHHH----hcccccChHHHHHHHHHHHHHHHHhhc-hHHhh-CcHHHHHHHHHHHHHhCCHhhccHH
Confidence 77666665542222111 111111112333333333221110000 00000 0111111111111000 0001
Q ss_pred HHHHHHHhhCC-CCCh-hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhccCCchHHHHHHH
Q 041942 219 EKANELFNEVP-KRDV-VSWNAMISGYVLCGMNKQALEMFEEMRSVGERP----DDVTMLSLLTACADLGDLEVGKKVHC 292 (498)
Q Consensus 219 ~~A~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~~~~~~a~~~~~ 292 (498)
-++.+.++.-- .|+. -....+...+.+ +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l- 321 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL- 321 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-
Confidence 11112221110 1211 111222222222 3333333333322221111 1234555555555666666665555
Q ss_pred HHHHhhcCCcchhhH-------HHHHHHHHh----cCCHHHHHHHHhcCCCCChh---HHHHHH---HHHHhCCC-HHHH
Q 041942 293 TLLDMTSGVAKVLHG-------NALIDMYAK----CGSIERAIEVFLGMRDRDVS---TWSTLI---GGLAFHGF-AEES 354 (498)
Q Consensus 293 ~~~~~~~~~~~~~~~-------~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~---~~~~l~---~~~~~~~~-~~~A 354 (498)
.++..-. |+...- ..+.+..+. ..+...=+.+|+.+...|+. .-..|+ .-+-+.|. -++|
T Consensus 322 ~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~deka 399 (549)
T PF07079_consen 322 ALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKA 399 (549)
T ss_pred HHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHH
Confidence 4443222 111110 111222220 11122223344444333221 111222 22444555 7788
Q ss_pred HHHHHHHHHCCCCCC-HHHHH----HHHHHHhhc---CCHHHHHHHHHHhHHhcCCCCC-------------hhHHHhhC
Q 041942 355 IAMFREMQRLKVRPT-EITFV----GVLVACSHA---GKVEEGKKYFKLMRDEYNIEPN-------------IRHYGVHG 413 (498)
Q Consensus 355 ~~~~~~m~~~~~~p~-~~~~~----~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~p~-------------~~~y~~~g 413 (498)
+.+++...+ +.|. ..+-+ .+-..|.++ ..+.+-..+-+-+.+ .|+.|- ++..-.+|
T Consensus 400 lnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e-~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 400 LNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITE-VGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-cCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 888888877 4453 22222 222334332 233444444343444 788775 22222888
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
++.++.-.-.-..+..| ++.+|..++-++....++++|.+++.++.
T Consensus 477 ey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 477 EYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99988888888888888 89999999999999999999999998863
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.025 Score=45.11 Aligned_cols=82 Identities=7% Similarity=0.115 Sum_probs=53.1
Q ss_pred HhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH
Q 041942 380 CSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 380 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
+...|++++|..+|+-+..-...+|+ ...+-..+++++|...|..+..++++||......+.+|...|+.+.|..
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 44566777777776666551112222 2222266677777777777777777777777777777777788777777
Q ss_pred HHHHhhh
Q 041942 455 VRKLMDD 461 (498)
Q Consensus 455 ~~~~m~~ 461 (498)
.|+...+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 7777665
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.011 Score=49.29 Aligned_cols=95 Identities=13% Similarity=0.179 Sum_probs=65.6
Q ss_pred HHHHhhC--CCCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC------------
Q 041942 222 NELFNEV--PKRDVVSWNAMISGYVLC-----GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG------------ 282 (498)
Q Consensus 222 ~~~~~~~--~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~------------ 282 (498)
...|+.. ..++-.+|..++..|.+. |.++-....++.|.+.|+.-|..+|+.|+..+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 456778888888888754 778888889999999999999999999998875421
Q ss_pred ----CchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhc
Q 041942 283 ----DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317 (498)
Q Consensus 283 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (498)
+-+-|++++ +.|+..|+.||..++..|++.+.+.
T Consensus 114 hyp~Qq~c~i~lL-~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 114 HYPRQQECAIDLL-EQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred cCcHHHHHHHHHH-HHHHHcCCCCcHHHHHHHHHHhccc
Confidence 123455555 5555556666655555555555443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.011 Score=53.78 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 041942 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442 (498)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 442 (498)
.++..+.-++.+.+++..|++...+..+ +.|+ ...+...|+++.|+..|+++++++|+|..+-..|+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe---~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLE---LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHh---cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3566777788888888888888888866 4554 4455578889999999999999999999999999988
Q ss_pred HHhCCCchHH-HHHHHHhhhC
Q 041942 443 YASRGEWNRV-EKVRKLMDDS 462 (498)
Q Consensus 443 ~~~~g~~~~A-~~~~~~m~~~ 462 (498)
--+..++.+. .++|..|..+
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 8887765554 7889998654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.34 Score=44.23 Aligned_cols=189 Identities=15% Similarity=0.103 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHhC--CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCCchHHHHHHHHHHHhhcCCcchhh--H
Q 041942 234 VSWNAMISGYVLC--GMNKQALEMFEEMRSVGERPDDVTMLSLLTA--CADLGDLEVGKKVHCTLLDMTSGVAKVLH--G 307 (498)
Q Consensus 234 ~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 307 (498)
.-|..|-.++... |+-..|.++-.+-.+. +..|...+..++.+ -.-.|+++.|.+-|+.|+. . |.... .
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-d---PEtRllGL 157 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-D---PETRLLGL 157 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-C---hHHHHHhH
Confidence 3466666555543 5666666555443311 24455555555543 4567899999999944442 2 22111 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHH--H
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEI--TFVGVLV--A 379 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~--~~~~l~~--~ 379 (498)
..|.-.-.+.|+.+.|..+-++... | -...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+. +
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 3333344567888888887776553 2 34677888888899999999999988765532 345532 2223332 2
Q ss_pred Hhh-cCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCC
Q 041942 380 CSH-AGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRK 430 (498)
Q Consensus 380 ~~~-~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~ 430 (498)
... .-+...|...-.+..+ +.|+ ...+.+.|++.++-.+++.+.+..|
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 238 MSLLDADPASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 222 1245666666555544 6666 4556688899999999998887666
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.045 Score=46.68 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHccCCCCCch-----------------HHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 415 VELGRLANKRLLNMRKDESGD-----------------YVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
..+|...|+.+++..|+++.+ -..++..|.+.|.+..|..-++.+.+.
T Consensus 106 ~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 106 TRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345556666666666665432 235688899999999999999998875
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.029 Score=43.64 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=41.9
Q ss_pred hhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCc---hHHHHHHHHHhCCC-
Q 041942 381 SHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESG---DYVLLSNIYASRGE- 448 (498)
Q Consensus 381 ~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~- 448 (498)
.+.|++++|.+.|+.+...++..|- +.+|-+.+++++|...++++++++|.++. ++...+-++.+...
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~ 100 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG 100 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence 4445555555555555554333332 34444555555555555555556665542 22223333333332
Q ss_pred --------------chHHHHHHHHhhhC
Q 041942 449 --------------WNRVEKVRKLMDDS 462 (498)
Q Consensus 449 --------------~~~A~~~~~~m~~~ 462 (498)
..+|...|+++.+.
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 55677777777653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.021 Score=45.82 Aligned_cols=112 Identities=20% Similarity=0.152 Sum_probs=69.0
Q ss_pred HHhCCCHHHHHHHHHHHHHC--C-CCCCHH--HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHH
Q 041942 345 LAFHGFAEESIAMFREMQRL--K-VRPTEI--TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGR 419 (498)
Q Consensus 345 ~~~~~~~~~A~~~~~~m~~~--~-~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~ 419 (498)
....++.+.+...+.++... | +-|+.. .|..-.+...+..-.+....+. ..+...|++++|.
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~-------------~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLA-------------EALLEAGDYEEAL 82 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHH-------------HHHHHTT-HHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhccCHHHHH
Confidence 45567888888888888763 2 222211 2222222222211122222222 2334578999999
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh-----hCCCccCCc
Q 041942 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD-----DSDIKKQPG 469 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 469 (498)
...++++..+|-+-..|..++.+|...|+..+|++.|+++. +.|+.|.+.
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 99999999999999999999999999999999999999885 458877654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.064 Score=45.77 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=37.9
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhCCCchHHH
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDES---GDYVLLSNIYASRGEWNRVE 453 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~ 453 (498)
...|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.|.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4556699999999999999999989865 46788899999999887544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0063 Score=41.23 Aligned_cols=50 Identities=16% Similarity=-0.018 Sum_probs=25.2
Q ss_pred ccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC
Q 041942 118 LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK 168 (498)
Q Consensus 118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 168 (498)
.|++++|.++|+.+.+.. +-+..++..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555443 22444445555555555555555555555443
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0035 Score=43.94 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCc
Q 041942 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (498)
..+++.+...|...|++++|+..+++..+. .+..-...|.-..++..++.+|...|++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------------~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 62 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI----------------------EEQLGDDHPDTANTLNNLGECYYRLGDY 62 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----------------------HHHTTTHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------HHHHCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 356777778888888888888888887661 1110000111245789999999999999
Q ss_pred hHHHHHHHHhhh
Q 041942 450 NRVEKVRKLMDD 461 (498)
Q Consensus 450 ~~A~~~~~~m~~ 461 (498)
++|++.+++..+
T Consensus 63 ~~A~~~~~~al~ 74 (78)
T PF13424_consen 63 EEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.008 Score=41.42 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=39.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 343 GGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 343 ~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
..|.+.+++++|.+.+++++.. .| +...+......+.+.|++++|.+.++.+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677778888888888888773 34 355666666777777777777777777766
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.9 Score=44.07 Aligned_cols=395 Identities=10% Similarity=0.044 Sum_probs=214.9
Q ss_pred ChHHHHHHHHhhhhccCCChHHHHHhcccCC--CCChh-hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 041942 36 DSSALRELIYSGSVVIPGAINYAHKMFVKIT--EPDTF-MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVL 112 (498)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 112 (498)
+-..+..+|. --.. ....+.+..+++.+. -|... -|-.....=.+.|..+.+.++|++-.+ |++-+...|...+
T Consensus 44 ~f~~wt~li~-~~~~-~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQ-ENDS-IEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHh-ccCc-hhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 3344555555 2233 344456666666655 45443 345555555677888899999998876 4666777777766
Q ss_pred HHhh-cccchhhHHHHHHHHHHh-CCC-CChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHH---hcC-
Q 041942 113 KACT-RLLYRNMGFCVHGKIVKY-GFE-FNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYA---RRG- 185 (498)
Q Consensus 113 ~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~---~~~- 185 (498)
..+. ..|+.+.....|+..+.. |.. .....|...+..-..++++.....+++++.+-....++....-|. ...
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 6554 446777788888877763 322 345678888888888888888888888776644433433333222 111
Q ss_pred -----ChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCh---hhHH-------HHHHHHHhCCChH
Q 041942 186 -----ELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDV---VSWN-------AMISGYVLCGMNK 250 (498)
Q Consensus 186 -----~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~-------~l~~~~~~~g~~~ 250 (498)
..+++.++-.........++ .....+......+....|.. ...+ ..-..+...-...
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~~~~~--------~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~ 272 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERSKITH--------SQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEE 272 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhhhccc--------ccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 11111111110000000000 00111222222222222211 0111 1111222222222
Q ss_pred HHHHHHHHHHhC---CCC----CCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHH
Q 041942 251 QALEMFEEMRSV---GER----PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323 (498)
Q Consensus 251 ~a~~~~~~m~~~---g~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (498)
.....++.-++. .++ ++..+|..-+.--...|+.+.+.-.|+....... .-...|-..+......|+.+-|
T Consensus 273 ~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--~Y~efWiky~~~m~~~~~~~~~ 350 (577)
T KOG1258|consen 273 EKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA--LYDEFWIKYARWMESSGDVSLA 350 (577)
T ss_pred HHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--hhHHHHHHHHHHHHHcCchhHH
Confidence 333333333221 112 2345666666666777888777777744433221 1123334444444555888888
Q ss_pred HHHHhcCCC------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCCHHHHH---HHH
Q 041942 324 IEVFLGMRD------RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI-TFVGVLVACSHAGKVEEGK---KYF 393 (498)
Q Consensus 324 ~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~---~~~ 393 (498)
..++....+ |......+.+. -..|+++.|..+++..... + |+.. .-..-+....+.|+.+.+. +++
T Consensus 351 ~~~~~~~~~i~~k~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~ 426 (577)
T KOG1258|consen 351 NNVLARACKIHVKKTPIIHLLEARFE--ESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELY 426 (577)
T ss_pred HHHHHhhhhhcCCCCcHHHHHHHHHH--HhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHH
Confidence 777765542 23333333333 3467999999999998875 3 6532 2223334456677777777 444
Q ss_pred HHhHHhcCCCCC----------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCC
Q 041942 394 KLMRDEYNIEPN----------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448 (498)
Q Consensus 394 ~~~~~~~~~~p~----------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (498)
..... ....+. ...|.-.++.+.|..++.++.+..|++...|..++......+-
T Consensus 427 s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 427 SSIYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHhcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 44444 233333 2223377899999999999999999999999999998887763
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.49 E-value=1 Score=44.77 Aligned_cols=310 Identities=10% Similarity=0.073 Sum_probs=190.4
Q ss_pred HhCCCCChHHHH-----HHHHHHHhcCChhHHHHhhccCCCCC---cchHHHHHHHHHhcC---ChHHHHHHHhcCCC--
Q 041942 133 KYGFEFNRFVRN-----SLIYFHANCGDLNTASVLFDGDAKMD---VVAWSSLTAGYARRG---ELSMARSLFDEMPV-- 199 (498)
Q Consensus 133 ~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-- 199 (498)
..|++.+..-|. .+++-+...+.+..|.++-..+..|. ...|.....-+.+.. +-+-+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 346666655553 56777888899999999888776654 455666666666553 22333334444443
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCC--------ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCC--------
Q 041942 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKR--------DVVSWNAMISGYVLCGMNKQALEMFEEMRSVG-------- 263 (498)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-------- 263 (498)
.+..+|..+.......|+.+-|..+++.=... +..-+..-+.-+...|+.+-...++-.|...-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888999999999988764431 22234455566667777777666665554321
Q ss_pred ---CCCCHHHHHHHHH--------HHhccCCchHHHHHHHHHHH------hhcCCcchhhHHHHHHHHHhcCCHH---HH
Q 041942 264 ---ERPDDVTMLSLLT--------ACADLGDLEVGKKVHCTLLD------MTSGVAKVLHGNALIDMYAKCGSIE---RA 323 (498)
Q Consensus 264 ---~~p~~~~~~~li~--------~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~---~A 323 (498)
.+.....|.-++. .+.+.++...+..-| ..-. ..+..|+. ......+.+..... +|
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~-~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASF-HLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhh-hhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHH
Confidence 1111222222222 112222222222222 1110 11222222 22334444433311 11
Q ss_pred -------HHHHhcCCCC-----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 041942 324 -------IEVFLGMRDR-----DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391 (498)
Q Consensus 324 -------~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 391 (498)
+.+.+.+... .-.+.+--+.-+...|+..+|.++-.+.+ -||...|..=+.++...++|++-++
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 1111222111 12345555666777899999998877654 4888888888999999999999999
Q ss_pred HHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHH
Q 041942 392 YFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 392 ~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
+-+..+.-.|..|=+....+.|+.++|.+++.+.-. +...+.+|.+.|++.+|.++--+
T Consensus 737 fAkskksPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 737 FAKSKKSPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhccCCCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 988887667888888888899999999999987632 22678899999999999876444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.043 Score=42.27 Aligned_cols=81 Identities=10% Similarity=-0.024 Sum_probs=54.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHH---------------HhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhc
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEM---------------RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m---------------~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 299 (498)
++..+|.++++.|+.+....+++.. ......|+..+..+++.+|+..+++..|.++.+......+
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 4444555555555555544444432 1233567888888888888888888888888877888888
Q ss_pred CCcchhhHHHHHHHHH
Q 041942 300 GVAKVLHGNALIDMYA 315 (498)
Q Consensus 300 ~~~~~~~~~~l~~~~~ 315 (498)
++.+..+|..|++-..
T Consensus 84 I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 84 IPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 7777777777776544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.38 Score=46.83 Aligned_cols=247 Identities=12% Similarity=0.127 Sum_probs=137.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCC-----------CChhhHHHHHHHHHhCCC--hHHHHHHHHHHHhCCCCCCH
Q 041942 202 LVSWNVMITGYAKQGEMEKANELFNEVPK-----------RDVVSWNAMISGYVLCGM--NKQALEMFEEMRSVGERPDD 268 (498)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 268 (498)
.+.+.+-+..|...|.+++|.++----.- -+.-.++.-=.+|.+..+ +-+...-++++++.|-.|+.
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 34455555667777777776554322110 122234444456666554 34555667788888888887
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--------------CC
Q 041942 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--------------RD 334 (498)
Q Consensus 269 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------~~ 334 (498)
... ...|+-.|++.+|.++|. +.|.. +..+.+|.....++.|.+++..-.. .|
T Consensus 636 iLl---A~~~Ay~gKF~EAAklFk----~~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~ 702 (1081)
T KOG1538|consen 636 LLL---ADVFAYQGKFHEAAKLFK----RSGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARN 702 (1081)
T ss_pred HHH---HHHHHhhhhHHHHHHHHH----HcCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence 643 445667788888888872 22221 2233344444444444444433221 01
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHH------HHHCC--C-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFRE------MQRLK--V-RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~------m~~~~--~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
+.-=.+....+...|+.++|..+.-+ +.+-+ + ..+..+...+...+.+...+--|.++|+.|-. ...-
T Consensus 703 ~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---~ksi 779 (1081)
T KOG1538|consen 703 IKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---LKSL 779 (1081)
T ss_pred cCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---HHHH
Confidence 11112334455566777776655321 12211 1 12345555555666667777778888877744 2333
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCCc----------hHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDESG----------DYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
++.....+++.+|..+.++.-+.-|+-.. -+..--++|.++|+..||..+++++...-+
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 44555677888888887776655544211 233345678888888888888888865544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.01 Score=55.42 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 370 EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
...+..+..+|.+.|++++|...+++.++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe 103 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE 103 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666666666666666666666555
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.041 Score=48.76 Aligned_cols=150 Identities=9% Similarity=0.013 Sum_probs=86.2
Q ss_pred hcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHhhcCCHHH
Q 041942 316 KCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV----GVLVACSHAGKVEE 388 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~g~~~~ 388 (498)
..|+..+|-..++++.+ .|...+...=.+|...|+...-...+++.... ..|+...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35666666666666653 25566666666777777777766666666543 234432222 22344556777777
Q ss_pred HHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCC----CCchHHHHHHHHHhCCCchHHHHHH
Q 041942 389 GKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKD----ESGDYVLLSNIYASRGEWNRVEKVR 456 (498)
Q Consensus 389 a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (498)
|++.-++..+ ++|. .......|+.+++.+..++--..-.. -...|-..+-.+...+.++.|+++|
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 7777766644 4554 22233666777777666654322111 1234555566666677777788777
Q ss_pred HHhhhCCCccCCc
Q 041942 457 KLMDDSDIKKQPG 469 (498)
Q Consensus 457 ~~m~~~~~~~~~~ 469 (498)
+.=+-+...++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 7665555554444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0045 Score=37.62 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=20.4
Q ss_pred HHhhCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 041942 409 YGVHGDVELGRLANKRLLNMRKDESGDYVLLSN 441 (498)
Q Consensus 409 y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 441 (498)
|...|++++|++.|+++++.+|+|+.+|..|+.
T Consensus 11 ~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 11 YRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 445555666666666666667777777766653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.029 Score=45.01 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH----hcCCCCChh
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD----EYNIEPNIR 407 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~ 407 (498)
....++..+...|++++|..+++++.... +.+...|..++.++...|+...|.++++++.+ +.|+.|+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 44556677778888888888888888832 23577888888888888888888888877654 467777744
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.48 Score=43.90 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=40.7
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC-------ChhhHHHHHHHHHh---CCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041942 207 VMITGYAKQGEMEKANELFNEVPKR-------DVVSWNAMISGYVL---CGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276 (498)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 276 (498)
.++-+|....+++...++.+.+... ....-....-++.+ .|+.++|+.++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3334455555566666666555532 11222234445555 6777777777777555555667777766665
Q ss_pred HH
Q 041942 277 AC 278 (498)
Q Consensus 277 ~~ 278 (498)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.17 Score=44.57 Aligned_cols=95 Identities=15% Similarity=0.025 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhc---CCHHHHHHHHhcCCC---CChhHHHH
Q 041942 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC---GSIERAIEVFLGMRD---RDVSTWST 340 (498)
Q Consensus 267 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~---~~~~~~~~ 340 (498)
|...|-.|...|...|+.+.|...|.+..+-.|..|+.. ..+..++... ....++..+|+++.. .|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~--~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEIL--LGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 445555555555555555555555544444444333322 2232222221 123445555554442 23444555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
|...+...|++.+|...|+.|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555555555555555555
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.026 Score=39.43 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRL--KVR---PT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+|+.+...|...|++++|+..|++..+. ... |+ ..++..+...+...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46777888888888888888888887642 112 22 45677777888888888888888887765
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.4 Score=41.23 Aligned_cols=87 Identities=13% Similarity=0.003 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcC-CCCChhHHH------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYN-IEPNIRHYG------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~y~------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
..|...+.+..+..-++.|+.+|.++.+ .| +.+++..|+ ..|+..-|-++|+-.+...|+++...+.....+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4566677777888889999999999999 67 566655444 788999999999999999999998888888888
Q ss_pred HhCCCchHHHHHHHH
Q 041942 444 ASRGEWNRVEKVRKL 458 (498)
Q Consensus 444 ~~~g~~~~A~~~~~~ 458 (498)
..-++-..|..+|+.
T Consensus 477 i~inde~naraLFet 491 (660)
T COG5107 477 IRINDEENARALFET 491 (660)
T ss_pred HHhCcHHHHHHHHHH
Confidence 888888888888773
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.25 Score=45.74 Aligned_cols=172 Identities=12% Similarity=0.030 Sum_probs=80.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCC---CCCCHhhHHHHHHHhhc---ccchhhHHHHHHHHHHhCCCCChHHHHHHHH
Q 041942 75 TIIRGSAQSQNPLDAVFLYTQMEKCS---IKPNKFTFSFVLKACTR---LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIY 148 (498)
Q Consensus 75 ~ll~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 148 (498)
.++-+|-...+++..+++.+.|.... +.-....-....-++.+ .|+.++|++++..++...-.+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44555666666666666666665431 11111111122223334 5666666666666555444556666665555
Q ss_pred HHHhc---------CChhHHHHhhccCCCCCcchHHH--HHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 041942 149 FHANC---------GDLNTASVLFDGDAKMDVVAWSS--LTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGE 217 (498)
Q Consensus 149 ~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 217 (498)
.|-.. ...++|...|.+.-+.+...|+. ++..+...|...+...-++++ -..+-....+.|.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i-------~~~l~~llg~kg~ 298 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKI-------GVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHH-------HHHHHHHHHhhcc
Confidence 44321 23666777776544433222221 122222233211111111110 0111111222222
Q ss_pred hHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 041942 218 MEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262 (498)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 262 (498)
.+. ..+-..+..++.++.-.|+.++|...+++|.+.
T Consensus 299 ~~~---------~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEK---------MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccc---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 111 134445566777777777788777777777765
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=1 Score=39.03 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=41.9
Q ss_pred hHHHhhCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 407 RHYGVHGDVELGRLANKRLLNMRKDES---GDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 407 ~~y~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
..|.+.|.+..|..-++.+++.-|+.+ .++-.|..+|...|-.++|...-+- +..+.
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v-l~~N~ 234 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV-LGANY 234 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH-HHhcC
Confidence 345588888888888888887766654 4566778889999999998887444 44454
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.092 Score=39.74 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=56.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC---------hhHHHhh
Q 041942 343 GGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN---------IRHYGVH 412 (498)
Q Consensus 343 ~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---------~~~y~~~ 412 (498)
-++...|+.+.|++.|.+.+. +.| ....|+.-..++.-+|+.++|.+-+++..+-.|-+.. ...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 356677888888888888777 444 4677777777877788888888777777763333311 2334466
Q ss_pred CChHHHHHHHHHHHccCC
Q 041942 413 GDVELGRLANKRLLNMRK 430 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~ 430 (498)
|+.+.|+..|+.+-++..
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 666666666666655443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.65 Score=40.15 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=60.7
Q ss_pred hCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhH--HH------------
Q 041942 347 FHGFAEESIAMFREMQRLKV--RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRH--YG------------ 410 (498)
Q Consensus 347 ~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~--y~------------ 410 (498)
+.|++++|.+.|+.+..... +-...+...++.++-+.++++.|...+++....++-.|++.- |.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 44455555555554443210 112334444444445555555555555554444444444110 00
Q ss_pred --hhCChHHHHHHHHHHHccCCCCCc-----------------hHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 411 --VHGDVELGRLANKRLLNMRKDESG-----------------DYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 411 --~~g~~~~a~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
...-...|...|+.+++.-|++.- .=..+++.|.+.|.+--|..-+++|.+.
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 122233444555555555565432 1235678899999999999999999887
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.013 Score=53.27 Aligned_cols=47 Identities=9% Similarity=-0.055 Sum_probs=25.3
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCH----hhHHHHHHHhhcccchhhHHHH
Q 041942 80 SAQSQNPLDAVFLYTQMEKCSIKPNK----FTFSFVLKACTRLLYRNMGFCV 127 (498)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~ 127 (498)
+++.|+....+.+|+...+.| .-|. .+|..|-.+|.-.+++++|+++
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 566666666666776666655 2222 2344444444445555555544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.85 E-value=2.4 Score=42.94 Aligned_cols=171 Identities=11% Similarity=-0.047 Sum_probs=106.9
Q ss_pred hhhccCCChHHHHHhcccCCCCChh---hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhh
Q 041942 47 GSVVIPGAINYAHKMFVKITEPDTF---MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 123 (498)
+..+ ..-++-|..+-+.-..+... ........+.+.|++++|..-|-+-... +.|. .+|.-+........
T Consensus 343 iL~k-K~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 343 ILFK-KNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKN 415 (933)
T ss_pred HHHH-hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHH
Confidence 3444 45566666665554422211 2333444566788999888887766542 3332 34555666666777
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcc--hHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 041942 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVV--AWSSLTAGYARRGELSMARSLFDEMPVRD 201 (498)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 201 (498)
--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+...+ ... -....+..+.+.+-.++|..+-.+... .
T Consensus 416 Lt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-h 492 (933)
T KOG2114|consen 416 LTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLATKFKK-H 492 (933)
T ss_pred HHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-C
Confidence 77788888888865 555557788999999999888888877652 222 244566677777777777766655442 2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCC
Q 041942 202 LVSWNVMITGYAKQGEMEKANELFNEVPK 230 (498)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 230 (498)
...... .+-..+++++|.+.+..+.-
T Consensus 493 e~vl~i---lle~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 493 EWVLDI---LLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHH---HHHHhcCHHHHHHHHhcCCH
Confidence 222222 23456788888888888764
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.13 Score=42.23 Aligned_cols=117 Identities=16% Similarity=0.127 Sum_probs=80.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hh
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRPTE------ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IR 407 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~ 407 (498)
..-+...|++++|..-|.++++ +.|.. ..|..-..++++.+.++.|+.-..+.++ +.|+ +.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAe 176 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAE 176 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHH
Confidence 3446678899999999998888 34432 2344444577888999999888888777 6675 66
Q ss_pred HHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHH--HHHHHHhhhCC
Q 041942 408 HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV--EKVRKLMDDSD 463 (498)
Q Consensus 408 ~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~m~~~~ 463 (498)
.|.+...+++|...|+++++.+|....+-...+..--....-.++ .+++.+++..|
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 788889999999999999999998776666665543333322222 23445554444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.47 Score=37.12 Aligned_cols=113 Identities=14% Similarity=0.074 Sum_probs=67.2
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 041942 311 IDMYAKCGSIERAIEVFLGMRDR------DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384 (498)
Q Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 384 (498)
.....+.|++++|.+.|+.+... ....--.++.+|...+++++|...+++.++....-...-|...+.+++.-.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 33445677888888888777642 234555677778888888888888888877432212345555555555433
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCch
Q 041942 385 KVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
..+. .+..+.. ..-| .+....|...|+.+++.-|++..+
T Consensus 97 ~~~~---~~~~~~~---~drD------~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 97 QDEG---SLQSFFR---SDRD------PTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred Hhhh---HHhhhcc---cccC------cHHHHHHHHHHHHHHHHCcCChhH
Confidence 3222 2222211 1111 234568888899999888887543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.2 Score=42.44 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--C---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD--R---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLV 378 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~ 378 (498)
..|..+.-+.|+.++|.+.+++|.+ | +......|+.++...+.+.++..++.+-.+...+.+ ..+|+..+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 4566666778888888888887753 2 334667788888888888888888888654332222 345655543
|
The molecular function of this protein is uncertain. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.11 Score=45.11 Aligned_cols=102 Identities=9% Similarity=0.014 Sum_probs=81.3
Q ss_pred ChHHHHHhcccCC--CCChhhHHHHHHHHhc-----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcc--------
Q 041942 54 AINYAHKMFVKIT--EPDTFMYNTIIRGSAQ-----SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL-------- 118 (498)
Q Consensus 54 ~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-------- 118 (498)
.+-.....|.... ..|-.+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.||..+-+-
T Consensus 49 ~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 49 SLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred cccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHH
Confidence 4445566666666 6778888888887754 356777788889999999999999999999987653
Q ss_pred --------cchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCC
Q 041942 119 --------LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155 (498)
Q Consensus 119 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 155 (498)
.+-+-+..++++|...|+.||..+-..|++++.+.+-
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2233468899999999999999999999999988775
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.58 Score=44.21 Aligned_cols=134 Identities=12% Similarity=0.135 Sum_probs=85.8
Q ss_pred HHHHHHHHhcCC---CCC---hhHHHHHHHHHHh---------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 041942 320 IERAIEVFLGMR---DRD---VSTWSTLIGGLAF---------HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384 (498)
Q Consensus 320 ~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~---------~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 384 (498)
.+.|..+|.+.. +-| ...|..+..++.. .....+|.++-++..+.+ +-|......+..+..-.|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 456666776655 322 3334433333322 234566777777777744 345777777777777778
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hhHH--H-----hhCChHHHHHHHHHHHccCCCCCchHH--HHHHHHHhCCCchHHHH
Q 041942 385 KVEEGKKYFKLMRDEYNIEPN-IRHY--G-----VHGDVELGRLANKRLLNMRKDESGDYV--LLSNIYASRGEWNRVEK 454 (498)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~p~-~~~y--~-----~~g~~~~a~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~ 454 (498)
+.+.|..+|++... +.|+ +..| . -.|+.++|.+.++++++++|.-..+-. ..+..|+ ....++|+.
T Consensus 353 ~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhHH
Confidence 89999999999876 7787 2222 2 588999999999999999987654333 3333444 445677777
Q ss_pred HHHH
Q 041942 455 VRKL 458 (498)
Q Consensus 455 ~~~~ 458 (498)
+|-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 7654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.26 Score=46.42 Aligned_cols=126 Identities=7% Similarity=0.048 Sum_probs=88.3
Q ss_pred hHH--HHHHHHHHhC-----CCHHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHhh---------cCCHHHHHHHHHHhH
Q 041942 336 STW--STLIGGLAFH-----GFAEESIAMFREMQR-LKVRPT-EITFVGVLVACSH---------AGKVEEGKKYFKLMR 397 (498)
Q Consensus 336 ~~~--~~l~~~~~~~-----~~~~~A~~~~~~m~~-~~~~p~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 397 (498)
..| ...+.+.... ...+.|..+|.+... ..+.|+ ...|..+..++.. .....+|.++.++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554431 245678889999882 226676 4555555443322 223556666666666
Q ss_pred HhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 398 DEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 398 ~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+ +.|+ .....-.++++.|...|+++..++|+.+.+|...++.+.-.|+.++|.+.+++..+...
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 6 5554 22223667799999999999999999999999999999999999999999999765443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.4 Score=45.18 Aligned_cols=62 Identities=11% Similarity=0.042 Sum_probs=40.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh----hHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRD--RDV----STWSTLIGGLAFHGFAEESIAMFREMQRL 364 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 364 (498)
+...++.+..+|.+.|++++|+..|++..+ |+. .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666777777777777777766543 332 24677777777777777777777777663
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.5 Score=37.80 Aligned_cols=188 Identities=16% Similarity=0.101 Sum_probs=89.1
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHH-HH
Q 041942 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RD-VSTWSTLIG-GL 345 (498)
Q Consensus 270 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~-~~ 345 (498)
.+......+...+.+..+...+...............+..+...+...++...+...+..... ++ ......... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 333444444444444444444422221111122223333344444444455555555544432 11 111222222 45
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC---------hhHHHhh
Q 041942 346 AFHGFAEESIAMFREMQRLKVRP----TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN---------IRHYGVH 412 (498)
Q Consensus 346 ~~~~~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---------~~~y~~~ 412 (498)
...|+++.|...+.+... ..| ....+......+...++.+.+...+...... .++ ...|...
T Consensus 141 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 141 YELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHc
Confidence 566666666666666544 222 1223333333345556666666666666551 222 2233355
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
++++.|...+..+....|.....+..+...+...|..+++...+++..+.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55666666666666666654455555555555555666666666665543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.42 E-value=1 Score=35.66 Aligned_cols=43 Identities=5% Similarity=-0.026 Sum_probs=21.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhc
Q 041942 74 NTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR 117 (498)
Q Consensus 74 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 117 (498)
..++..+...+.+.....+++.+...+ ..+...++.++..+++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 344555555555555555555555443 2344455555555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.42 E-value=2.4 Score=39.83 Aligned_cols=35 Identities=3% Similarity=-0.193 Sum_probs=27.0
Q ss_pred hCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhC
Q 041942 412 HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (498)
.+..+++...|..+.++.|....+|..++..+.+.
T Consensus 271 ~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 271 SESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred cccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 46778888888888888888877887777776554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.35 Score=47.15 Aligned_cols=110 Identities=18% Similarity=0.100 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhhcCCHHHHHHHHHHhHHhcCCCCChh---------HHHhhCChHHHH
Q 041942 350 FAEESIAMFREMQRLKVRPTEITFVGVL-VACSHAGKVEEGKKYFKLMRDEYNIEPNIR---------HYGVHGDVELGR 419 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---------~y~~~g~~~~a~ 419 (498)
..+.|.+++..+.+ --|+...|...- +.+...|++++|.+.++.......--|... .+....++++|.
T Consensus 248 ~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 44555666666555 235444433222 444555666666666655432101111111 112556666666
Q ss_pred HHHHHHHccCCCCCchHHHH-HHHHHhCCCc-------hHHHHHHHHhhh
Q 041942 420 LANKRLLNMRKDESGDYVLL-SNIYASRGEW-------NRVEKVRKLMDD 461 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~m~~ 461 (498)
..|.++.+.+..+...|..+ +.++...|+. ++|.+++++...
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 66666665555544444443 3445556777 777777777653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.6 Score=42.08 Aligned_cols=128 Identities=18% Similarity=0.217 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 041942 143 RNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKAN 222 (498)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 222 (498)
.+.++..+.+.|..+.|+++.+. + ..-.....+.|+.+.|.++.++.. +...|..|.+...+.|+++-|+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe 367 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAE 367 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHH
Confidence 44555555555555555544221 1 122333445555555555544433 3445555555555666666666
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 223 ELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
+.|.+..+ |..|+-.|...|+.++..++.+.....|- ++....++.-.|+.++..+++
T Consensus 368 ~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 368 ECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 66555432 44455555555665555555554444431 333333344444544444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.2 Score=39.45 Aligned_cols=47 Identities=13% Similarity=0.228 Sum_probs=19.6
Q ss_pred hcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCC
Q 041942 183 RRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVP 229 (498)
Q Consensus 183 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 229 (498)
..|+..+|..+|.... +.+...-..++.+|...|+.+.|..++..+.
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3344444444444333 2223333344444444444444444444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.13 Score=41.17 Aligned_cols=84 Identities=11% Similarity=0.061 Sum_probs=52.2
Q ss_pred HHhcCCHHHHHHHHhcCC--C-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 041942 314 YAKCGSIERAIEVFLGMR--D-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 390 (498)
+...|++++|..+|+-+. + -|..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 445666666666666443 2 245556666666666777777777776665533 233444555566777777777777
Q ss_pred HHHHHhHH
Q 041942 391 KYFKLMRD 398 (498)
Q Consensus 391 ~~~~~~~~ 398 (498)
..|+..+.
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77776665
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.25 Score=38.08 Aligned_cols=82 Identities=7% Similarity=-0.049 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHh---------------CCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHH-
Q 041942 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEK---------------CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK- 133 (498)
Q Consensus 70 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---------------~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 133 (498)
..++..+|-++++.|+++....+++..-. ....|+..+..+++.+++..+++..|.++++...+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34556666666677776666666655421 12345566666666666666666666666665554
Q ss_pred hCCCCChHHHHHHHHHHH
Q 041942 134 YGFEFNRFVRNSLIYFHA 151 (498)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~ 151 (498)
.+++.+..+|..|+.-..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 345555556665555433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.23 Score=37.73 Aligned_cols=86 Identities=19% Similarity=0.227 Sum_probs=61.0
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhhcCCH
Q 041942 313 MYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT---EITFVGVLVACSHAGKV 386 (498)
Q Consensus 313 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~ 386 (498)
+....|+++.|++.|.+.. ......||.-..++.-+|+.++|+.-+++..+..-... ...|.--...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4567788888888887654 34778888888888888888888888888877321122 22333333456677888
Q ss_pred HHHHHHHHHhHH
Q 041942 387 EEGKKYFKLMRD 398 (498)
Q Consensus 387 ~~a~~~~~~~~~ 398 (498)
+.|..-|+...+
T Consensus 132 d~AR~DFe~AA~ 143 (175)
T KOG4555|consen 132 DAARADFEAAAQ 143 (175)
T ss_pred HHHHHhHHHHHH
Confidence 888888887766
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.14 Score=46.91 Aligned_cols=108 Identities=11% Similarity=-0.030 Sum_probs=76.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHhhCChHHHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHYGVHGDVELGR 419 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~~g~~~~a~ 419 (498)
-...|.+.|++..|..-|++.+.. -... +.-+.++.......- ..+.-| ...|.+.+.+..|.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~~~-----------~~~~~ee~~~~~~~k---~~~~lNlA~c~lKl~~~~~Ai 277 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LEYR-----------RSFDEEEQKKAEALK---LACHLNLAACYLKLKEYKEAI 277 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hhcc-----------ccCCHHHHHHHHHHH---HHHhhHHHHHHHhhhhHHHHH
Confidence 356778888888888888887652 1111 111112222111111 112222 55677999999999
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+..+++++++|+|..+...-+.+|...|+++.|+..|+++.+...
T Consensus 278 ~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 278 ESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999987443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.9 Score=41.60 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=105.0
Q ss_pred HHHhcCChhHHHHhhc--cCCC-CCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 041942 149 FHANCGDLNTASVLFD--GDAK-MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELF 225 (498)
Q Consensus 149 ~~~~~g~~~~A~~~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 225 (498)
...-.|+++++.++.+ .+.+ -+....+.++..+-+.|.++.|+++..+ + ..-.+...+.|+++.|.++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHC
T ss_pred HHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHH
Confidence 3445678888655543 2221 1344578888999999999999998543 2 23456678999999999988
Q ss_pred hhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchh
Q 041942 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305 (498)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (498)
++.. +...|..|.....+.|+++-|...|.+.. -+..|+-.|...|+.+.-.++. +.....+.
T Consensus 342 ~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~-~~a~~~~~----- 404 (443)
T PF04053_consen 342 KELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLA-KIAEERGD----- 404 (443)
T ss_dssp CCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHH-HHHHHTT------
T ss_pred HhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHH-HHHHHccC-----
Confidence 8775 66799999999999999999999998775 2566777788888888777776 44444432
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCC
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
++....++...|+.++..+++.+..
T Consensus 405 -~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 405 -INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2445556666788888887776543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.3 Score=35.87 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=27.3
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 041942 207 VMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMR 260 (498)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 260 (498)
.+++.+...|++-+|.++.+....-+......++.+..+.++...-..+++-..
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555666666666655443333333445555555555554444444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.92 E-value=1.7 Score=35.33 Aligned_cols=31 Identities=6% Similarity=-0.004 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHhhcccch
Q 041942 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYR 121 (498)
Q Consensus 91 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 121 (498)
+.++.+.+.+++|+...|..+++.+.+.|++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 3344444445555555555555555555543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.9 Score=34.72 Aligned_cols=137 Identities=10% Similarity=0.093 Sum_probs=74.7
Q ss_pred hcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYF 393 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 393 (498)
-.|.+++..+++.+... .+..-+|-+|.-....-+-+-..+.++..-+- +..+ ..-...++.++...|...+-..+-
T Consensus 14 ldG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGki-FDis~C~NlKrVi~C~~~~n~~se~vD~A 92 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKI-FDISKCGNLKRVIECYAKRNKLSEYVDLA 92 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S-GGG-S-THHHHHHHHHTT---HHHHHH
T ss_pred HhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhh-cCchhhcchHHHHHHHHHhcchHHHHHHH
Confidence 35666777777766553 34445555555444444555555555544321 1111 122344555666655543322211
Q ss_pred HHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 394 KLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 394 ~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
- ......|+-+.-.++++.+...+..+|.....++.+|.+.|+..+|-++++++-++|++
T Consensus 93 L------------d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 93 L------------DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp H------------HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred H------------HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 1 11124677777888888887666778899999999999999999999999999999985
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.056 Score=31.00 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 435 DYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
+|..|+.+|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999965
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.6 Score=34.55 Aligned_cols=127 Identities=15% Similarity=0.108 Sum_probs=86.5
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCCh
Q 041942 108 FSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGEL 187 (498)
Q Consensus 108 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (498)
...++..+...+.......+++.+...+ ..+...++.++..|++.++ ......++. ..+......++..|.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 3456666666777888888888888776 3677788888888887643 444555552 23445556677888888888
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 041942 188 SMARSLFDEMPVRDLVSWNVMITGYAKQ-GEMEKANELFNEVPKRDVVSWNAMISGYVL 245 (498)
Q Consensus 188 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 245 (498)
+++.-++.++. -|...+..+... ++.+.|.+++.+. .+...|..++..+..
T Consensus 86 ~~~~~l~~k~~-----~~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l~ 137 (140)
T smart00299 86 EEAVELYKKDG-----NFKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHhhc-----CHHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 88888887764 233344444444 7888888888874 355677777776654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.7 Score=40.32 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCC
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKV--RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGD 414 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~ 414 (498)
.|+.-+..+ ..|++..|...|...++..- .-....+-.|..++...|+++.|..+|..+.++++-.|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~---------- 212 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP---------- 212 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC----------
Confidence 466666544 46668888888888877531 11234556677888888888888888888777544333
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
.-|..+..|+.+..+.|+.++|-.+|++..++
T Consensus 213 ----------------KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 213 ----------------KAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred ----------------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33445556666666666666666666665543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.34 Score=42.22 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC--C----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHH
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMRD--R----DVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRP-TEITFVGVL 377 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p-~~~~~~~l~ 377 (498)
.|+.-+. +.+.|++..|...|....+ | ....+--|..++...|++++|..+|..+.+.- -.| -+.++..|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4554444 3456778888888876654 2 23455558899999999999999999988742 112 256778888
Q ss_pred HHHhhcCCHHHHHHHHHHhHHhcC
Q 041942 378 VACSHAGKVEEGKKYFKLMRDEYN 401 (498)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~~~~~~~ 401 (498)
.+..+.|+.++|...|+++.++++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC
Confidence 888999999999999999988543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.14 Score=40.90 Aligned_cols=128 Identities=14% Similarity=0.061 Sum_probs=78.6
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHH
Q 041942 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190 (498)
Q Consensus 111 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 190 (498)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566677778888888888888766666788888888888888888888888874333 3334566677777777777
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 041942 191 RSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 248 (498)
.-++.++...+.. +..+...++++.|.+.+... .+...|..++..+...+.
T Consensus 90 ~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 90 VYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 7666655411110 00112233444444333333 346677777777766654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.37 E-value=6.8 Score=41.62 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=16.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHH
Q 041942 436 YVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
...|+.++...|..++|.++-+.
T Consensus 1187 ~~~Ll~~l~~~g~~eqa~~Lq~~ 1209 (1265)
T KOG1920|consen 1187 LKRLLEVLVTFGMDEQARALQKA 1209 (1265)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHH
Confidence 56677778888887777765433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.41 Score=42.38 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=53.4
Q ss_pred HHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh-----CCCccCCc
Q 041942 409 YGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD-----SDIKKQPG 469 (498)
Q Consensus 409 y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 469 (498)
+..+|+++.+...+++.++.+|-+...|..++.+|...|+...|+..|+++.+ .|+.|.+.
T Consensus 163 ~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 163 LIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 44588899999999999999999999999999999999999999999998875 56666443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.08 Score=32.01 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 433 SGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
|.++..++.+|.+.|++++|+++|+++.+...
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45789999999999999999999999988654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.27 Score=40.44 Aligned_cols=88 Identities=9% Similarity=0.004 Sum_probs=71.4
Q ss_pred HHHhhcCCHHHHHHHHHHhHHhcCCCCC----------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC
Q 041942 378 VACSHAGKVEEGKKYFKLMRDEYNIEPN----------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447 (498)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~----------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (498)
.-+.+.|++++|..-+...+...+-.|. ...+.+.+.++.|.....++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3457789999999999998873111111 223338999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhhCCCc
Q 041942 448 EWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 448 ~~~~A~~~~~~m~~~~~~ 465 (498)
.+++|++-|+++.+....
T Consensus 183 k~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPS 200 (271)
T ss_pred hHHHHHHHHHHHHHhCcc
Confidence 999999999999876543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.16 E-value=2 Score=38.05 Aligned_cols=159 Identities=8% Similarity=-0.081 Sum_probs=95.8
Q ss_pred HHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 041942 22 KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK 98 (498)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 98 (498)
.++-+.+-+....+....+..... ... .|++.+|..+|+... +.+...--.+...|...|+.+.|..++..+..
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~--~~~-~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKE--LIE-AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhh--hhh-ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 345555555554555555555554 344 788888888888776 33455666777888889999999999988765
Q ss_pred CCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC-----Ccch
Q 041942 99 CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM-----DVVA 173 (498)
Q Consensus 99 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~ 173 (498)
.--.........-|..+.+.........+-...-.. +-|...-..+...+...|+.+.|.+.+=.+.+. |...
T Consensus 197 ~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~ 274 (304)
T COG3118 197 QAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEA 274 (304)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHH
Confidence 321222222222344555555555555555555442 336667777888888888888887766544432 3334
Q ss_pred HHHHHHHHHhcC
Q 041942 174 WSSLTAGYARRG 185 (498)
Q Consensus 174 ~~~l~~~~~~~~ 185 (498)
-..++..+.-.|
T Consensus 275 Rk~lle~f~~~g 286 (304)
T COG3118 275 RKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhcC
Confidence 444444444333
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.95 Score=37.29 Aligned_cols=85 Identities=11% Similarity=0.035 Sum_probs=56.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV-----GVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYG 410 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~ 410 (498)
+...+...+++++|..-++..... |....+. .|.+.....|.+|+|...++.... .++.+- .+.+.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~w~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-ESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-ccHHHHHHHHhhhHHH
Confidence 345677788999999888877752 3333333 334567788889999988887766 444442 44445
Q ss_pred hhCChHHHHHHHHHHHccC
Q 041942 411 VHGDVELGRLANKRLLNMR 429 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~ 429 (498)
..|+-++|+..|+++++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 6677777777777777655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.06 E-value=9.7 Score=40.56 Aligned_cols=105 Identities=14% Similarity=0.197 Sum_probs=53.9
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCCchHH
Q 041942 210 TGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV--TMLSLLTACADLGDLEVG 287 (498)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~~a 287 (498)
..+...+.+++|.-.|+...+ ...-+.+|..+|+|.+|+.+-.++-.. -+.. +-..|+.-+...++.-+|
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhH
Confidence 333445555555555554433 122355666667777777666655311 1111 113455556666666666
Q ss_pred HHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 041942 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
-++..+..... ...+..|++...+++|..+-....
T Consensus 1019 a~il~e~~sd~---------~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1019 AKILLEYLSDP---------EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHhcCH---------HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 66653332211 234445666666777766655444
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.98 E-value=8.1 Score=39.36 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=32.8
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcc
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL 118 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 118 (498)
-.| .+|-.|.|.|++++|.++..+.... .......+...+..+...
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 345 4566788999999999999666543 456667788888888765
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.94 E-value=6.8 Score=38.36 Aligned_cols=165 Identities=15% Similarity=0.139 Sum_probs=106.3
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC-CCc---------chHHHHHHHHHh----cCChHHH
Q 041942 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK-MDV---------VAWSSLTAGYAR----RGELSMA 190 (498)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~l~~~~~~----~~~~~~A 190 (498)
.-+|.-+... +| .....+++...-.||-+.+++.+....+ .+. ..|+..+..++- ..+.+.|
T Consensus 177 ~G~f~L~lSl-LP---p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LP---PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CC---HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3445555543 23 3345566666677777777777754333 111 234444444433 4567889
Q ss_pred HHHHhcCC--CCCcchHHHH-HHHHHhcCChHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 041942 191 RSLFDEMP--VRDLVSWNVM-ITGYAKQGEMEKANELFNEVPKR-------DVVSWNAMISGYVLCGMNKQALEMFEEMR 260 (498)
Q Consensus 191 ~~~~~~~~--~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 260 (498)
.+++..+. -|+...|... .+.+...|++++|.+.|+..... ....+--+.-.+....+|++|...|..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 99999888 4776655443 46677889999999999976531 22345556777888899999999999999
Q ss_pred hCCCCCCHHHHHHHHHHH-hccCCc-------hHHHHHHHHH
Q 041942 261 SVGERPDDVTMLSLLTAC-ADLGDL-------EVGKKVHCTL 294 (498)
Q Consensus 261 ~~g~~p~~~~~~~li~~~-~~~~~~-------~~a~~~~~~~ 294 (498)
+.. ..+..+|.-+..+| ...|+. ++|..++.+.
T Consensus 333 ~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 333 KES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred hcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 764 44566666555544 456666 7777777433
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.25 Score=41.22 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=59.6
Q ss_pred HHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCceeEEEecCCeeEEEecC
Q 041942 408 HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYLFN 486 (498)
Q Consensus 408 ~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (498)
.|...|-..-|+-.|.+++.+.|+-+.+++.|+--+...|+++.|.+.|+...+ .+|+..+..++ -++.-|..|
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E----LDp~y~Ya~lN-Rgi~~YY~g 147 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAHLN-RGIALYYGG 147 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc----cCCcchHHHhc-cceeeeecC
Confidence 355778888899999999999999999999999999999999999999998854 45666666666 555555554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.77 E-value=2.4 Score=32.53 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=75.5
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhh---HHHHHHHHHhcCCH
Q 041942 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH---GNALIDMYAKCGSI 320 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 320 (498)
.-.|..++..+++.+...+. +..-++-+|--....-+-+-..+.+ ..-|--.|... ...++.+|.+.|..
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~L----dsIGkiFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETL----DSIGKIFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHH----HHHGGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHH----HHHhhhcCchhhcchHHHHHHHHHhcch
Confidence 34577777777777776432 3333444444444444444444444 22222222222 13455555555432
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc
Q 041942 321 ERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY 400 (498)
Q Consensus 321 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 400 (498)
.......+..+..+|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.+.-+ .
T Consensus 86 --------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-k 149 (161)
T PF09205_consen 86 --------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE-K 149 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-T
T ss_pred --------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-h
Confidence 233455677788888888888888888763 367888888888999999999999999888877 4
Q ss_pred CC
Q 041942 401 NI 402 (498)
Q Consensus 401 ~~ 402 (498)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.21 Score=44.62 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=15.2
Q ss_pred hhCChHHHHHHHHHHHccCCCCCc
Q 041942 411 VHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
..|+.++|.+.++.++++.|++..
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHH
Confidence 345566666677777777776543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=5.2 Score=36.06 Aligned_cols=56 Identities=20% Similarity=0.136 Sum_probs=25.7
Q ss_pred CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 229 PKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
.+++..+...-+.++.+.|+ ..|...+-...+.+. .....+.++...|.. +|...+
T Consensus 202 ~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L 257 (280)
T PRK09687 202 QDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVL 257 (280)
T ss_pred cCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHH
Confidence 34455555555555555555 334444433333321 123445555555553 344444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.61 E-value=1.3 Score=39.84 Aligned_cols=141 Identities=11% Similarity=0.012 Sum_probs=74.4
Q ss_pred cccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHH----HHHHHHHhcCChHH
Q 041942 117 RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWS----SLTAGYARRGELSM 189 (498)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----~l~~~~~~~~~~~~ 189 (498)
-.|++.+|-..++++++. .|.|...+..-=.+|+..|+.+.-...++++.+ +|...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345555555555555553 344555555555666666666666666655544 2322222 22334455666666
Q ss_pred HHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC--C-----hhhHHHHHHHHHhCCChHHHHHHHHH
Q 041942 190 ARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPKR--D-----VVSWNAMISGYVLCGMNKQALEMFEE 258 (498)
Q Consensus 190 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~-----~~~~~~l~~~~~~~g~~~~a~~~~~~ 258 (498)
|.+.-++.. +.|.-.-.++...+--.|+..++.++..+-... . ..-|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666666655 333334445555556666666666666554431 0 11122233344455777777777764
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=7.8 Score=36.82 Aligned_cols=118 Identities=11% Similarity=0.025 Sum_probs=85.2
Q ss_pred hhchhhh-HHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHH
Q 041942 15 CTNLRTL-KQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAV 90 (498)
Q Consensus 15 ~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~ 90 (498)
.|++..| ++++..++...-.|+.......| +.. .|+++.+...+.... .....+-..+++.....|+++.|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i---~~~-lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI---FSH-LGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH---HHH-hhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 4677665 66777777776667766655544 466 789999999887664 556677888999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCC
Q 041942 91 FLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE 137 (498)
Q Consensus 91 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 137 (498)
.+-+-|....+. +++.........-..|-++++...++++.....+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 999999876543 4444433333344567888999889888765533
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.16 E-value=1 Score=39.31 Aligned_cols=108 Identities=14% Similarity=0.125 Sum_probs=69.9
Q ss_pred HHHHhhCC--CCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC------------
Q 041942 222 NELFNEVP--KRDVVSWNAMISGYVLC-----GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG------------ 282 (498)
Q Consensus 222 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~------------ 282 (498)
+..|..+. ++|-.+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 45666666666655433 556667777788888888888888888887664432
Q ss_pred ----CchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCH-HHHHHHHhcC
Q 041942 283 ----DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI-ERAIEVFLGM 330 (498)
Q Consensus 283 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~ 330 (498)
+-+-++.++ +.|+..|+.||..+-..|++++.+.+-. .+..++.-.|
T Consensus 134 HYP~QQ~C~I~vL-eqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVL-EQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHH-HHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 123466677 7778888888888888888888776653 3334443333
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.08 E-value=4.4 Score=41.19 Aligned_cols=174 Identities=13% Similarity=0.055 Sum_probs=83.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC-CCCc--chHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHH
Q 041942 176 SLTAGYARRGELSMARSLFDEMP-VRDL--VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQA 252 (498)
Q Consensus 176 ~l~~~~~~~~~~~~A~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 252 (498)
.-+..+++...++-|+.+-+.-. .++. .....-.+-+.+.|++++|...|-+...--.. ..++.-|....+...-
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknL 416 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNL 416 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHH
Confidence 34445555555666665554433 1111 12222233445666677666666554421111 1234444555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 041942 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD 332 (498)
Q Consensus 253 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (498)
..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++. +.........|. ...+..+.+.+-.++|.-+-.....
T Consensus 417 t~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI-~~~~~g~~~fd~---e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 417 TSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFI-SKCDKGEWFFDV---ETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHH-hcCCCcceeeeH---HHHHHHHHHhChHHHHHHHHHHhcc
Confidence 6666666666643 3333455666777777766666555 222211111122 2344455555555555554443332
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHH
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFRE 360 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 360 (498)
+......++. ..+++++|++++..
T Consensus 492 -he~vl~ille---~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 492 -HEWVLDILLE---DLHNYEEALRYISS 515 (933)
T ss_pred -CHHHHHHHHH---HhcCHHHHHHHHhc
Confidence 3333333332 34566666666554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.86 E-value=8.7 Score=36.34 Aligned_cols=95 Identities=8% Similarity=0.020 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHH-hcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC-------C-----------CChhhHHHHHHH
Q 041942 19 RTLKQIQALVTI-NGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT-------E-----------PDTFMYNTIIRG 79 (498)
Q Consensus 19 ~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~-------~-----------~~~~~~~~ll~~ 79 (498)
+..........+ .|..+=...+..+. .|. .+.+..|.+.+..-. . +|...=+..+..
T Consensus 62 d~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~--~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~s 137 (549)
T PF07079_consen 62 DLMEKQLMELRQQFGKSAYLPLFKALV--AYK--QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHS 137 (549)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHH--HHH--hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHH
Confidence 333333333333 34333344444444 344 578888877764432 1 122233455677
Q ss_pred HhccCChHHHHHHHHHHHhCCCC----CCHhhHHHHHHHhhc
Q 041942 80 SAQSQNPLDAVFLYTQMEKCSIK----PNKFTFSFVLKACTR 117 (498)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~li~~~~~ 117 (498)
+...|++.++..++++|...=++ .+..+|+.++-.+++
T Consensus 138 LIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 138 LIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 78999999999999988664333 688888886555554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.66 E-value=5.9 Score=33.88 Aligned_cols=61 Identities=8% Similarity=0.135 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH-------------hhCChHHHHHHHHHHHccCCCCC
Q 041942 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-------------VHGDVELGRLANKRLLNMRKDES 433 (498)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~-------------~~g~~~~a~~~~~~~~~~~~~~~ 433 (498)
.+..+...-...+++.+|+.+++++.. ..+..+..-|. -..+.-.+.+.+++..+++|.-.
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~-~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVAR-SSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 444444444556677777777777666 45554433333 22455666677777777777643
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.32 Score=27.79 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=14.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQ 362 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~ 362 (498)
|+.|...|.+.|++++|+++|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5556666666666666666666643
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.62 E-value=13 Score=37.74 Aligned_cols=99 Identities=10% Similarity=0.105 Sum_probs=56.5
Q ss_pred HHHHHhcCChhHHHHhhccCCCC-----CcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 041942 147 IYFHANCGDLNTASVLFDGDAKM-----DVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKA 221 (498)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 221 (498)
++.+.+.+.+++|+.+.+..... -...+..++..+.-.|++++|-...-.|...+..-|.--+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 44555666777777766544331 1234556666677777777777776666655555565555555555555444
Q ss_pred HHHHhhCCC-CChhhHHHHHHHHHh
Q 041942 222 NELFNEVPK-RDVVSWNAMISGYVL 245 (498)
Q Consensus 222 ~~~~~~~~~-~~~~~~~~l~~~~~~ 245 (498)
..++-.-.. -+...|..++..+..
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH
Confidence 333322222 244566666666655
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.43 E-value=8 Score=34.88 Aligned_cols=20 Identities=10% Similarity=-0.097 Sum_probs=13.9
Q ss_pred HHHHhCCCHHHHHHHHHHHH
Q 041942 343 GGLAFHGFAEESIAMFREMQ 362 (498)
Q Consensus 343 ~~~~~~~~~~~A~~~~~~m~ 362 (498)
..+.+.++|+.|.++|+-..
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34556788888888887543
|
It is also involved in sporulation []. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.23 E-value=27 Score=40.51 Aligned_cols=278 Identities=9% Similarity=0.024 Sum_probs=150.4
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC----C--CCcchHHHHHHHHHhcCChHHHHHHHhh-CCCCChhhHHHHHHHHHhCCC
Q 041942 176 SLTAGYARRGELSMARSLFDEMP----V--RDLVSWNVMITGYAKQGEMEKANELFNE-VPKRDVVSWNAMISGYVLCGM 248 (498)
Q Consensus 176 ~l~~~~~~~~~~~~A~~~~~~~~----~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 248 (498)
.+..+-.+.+.+..|...++.-. + .....|..+...|...+++|....+... ...++. + .-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl--~-~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL--Y-QQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH--H-HHHHHHHhhcc
Confidence 55567778899999999998832 1 1223455555689999999888887773 333332 2 23445567799
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhH-HHHHHHHHhcCCHHHHHHHH
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHG-NALIDMYAKCGSIERAIEVF 327 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~ 327 (498)
+..|...|+.+.+.+ ++...+++.++......|.++......+...... .+....+ +.=+.+-.+.++++.....+
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999999999775 3446677777777777777777766552222221 1222222 22233445666666666655
Q ss_pred hcCCCCChhHHHHH--HHHHHhCCCHH--HHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHh-------------
Q 041942 328 LGMRDRDVSTWSTL--IGGLAFHGFAE--ESIAMFREMQRLKVRP--------T-EITFVGVLVACS------------- 381 (498)
Q Consensus 328 ~~~~~~~~~~~~~l--~~~~~~~~~~~--~A~~~~~~m~~~~~~p--------~-~~~~~~l~~~~~------------- 381 (498)
. ..+..+|... +..+.+..+-+ .-.+..+.+.+.-+.| + ...|..++....
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~ 1618 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKK 1618 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4 2233333322 11111111110 0001111111110000 0 112222222111
Q ss_pred -------------------hcCCHHHHHHH---HHHhHHhcCCCCC-----hhHHH-------hhCChHHHHHHHHHHHc
Q 041942 382 -------------------HAGKVEEGKKY---FKLMRDEYNIEPN-----IRHYG-------VHGDVELGRLANKRLLN 427 (498)
Q Consensus 382 -------------------~~g~~~~a~~~---~~~~~~~~~~~p~-----~~~y~-------~~g~~~~a~~~~~~~~~ 427 (498)
+.+....+.+- +++..-....+|+ ...|. +.|.++.|..++-.+.+
T Consensus 1619 ~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e 1698 (2382)
T KOG0890|consen 1619 VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE 1698 (2382)
T ss_pred cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Confidence 01111111111 1111111222333 22222 58888888888877776
Q ss_pred cCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 428 MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 428 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
.. -+.++...++.+...|+-..|+.++++-.+...
T Consensus 1699 ~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1699 SR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 55 467888899999999999999999999887665
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.22 E-value=2.1 Score=38.93 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=12.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHH
Q 041942 436 YVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
...++++|.+.|+.+.|..-|+.
T Consensus 249 ~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 249 LLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHhcccHhHHHHHHHH
Confidence 33455555555555555554444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.38 Score=26.89 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666667777777777777776666
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.24 Score=27.67 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
.+|..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.67 E-value=3.7 Score=41.17 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhC-CCchHHHHHHHHhhhCCCc
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASR-GEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 465 (498)
+.+.|...+.++-+.++ +.+...+...+.-- ++++.+.-.+..+.+.|.+
T Consensus 379 ~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred CHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 45556666666655542 22222222222211 6666666666666665554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.60 E-value=7.9 Score=33.08 Aligned_cols=190 Identities=18% Similarity=0.146 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC-----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-HH
Q 041942 205 WNVMITGYAKQGEMEKANELFNEVP-----KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT-AC 278 (498)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~ 278 (498)
+......+...+.+..+...+.... ......+......+...+.+..+...+.........+. ........ .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHH
Confidence 3334444444455444444444432 12333444455555555666666666666654432221 11111122 45
Q ss_pred hccCCchHHHHHHHHHHHhhcC--CcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---C-ChhHHHHHHHHHHhCCCHH
Q 041942 279 ADLGDLEVGKKVHCTLLDMTSG--VAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---R-DVSTWSTLIGGLAFHGFAE 352 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~ 352 (498)
...|+++.+...+..... ... ......+......+...++.+.+...+..... . ....+..+...+...++++
T Consensus 141 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 141 YELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 566666666666644422 111 01112222222224445555555555554442 1 2344555555555566666
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 353 ESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.|...+..... ..|+ ...+..+...+...|..+.+...+.+...
T Consensus 220 ~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 220 EALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666655 2333 22222222222244445555555544444
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.53 E-value=15 Score=36.11 Aligned_cols=180 Identities=11% Similarity=0.076 Sum_probs=108.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041942 201 DLVSWNVMITGYAKQGEMEKANELFNEVPKR---DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277 (498)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 277 (498)
+..+|..-+.--.+.|+.+.+.-+|++..-| =...|-..+.-....|+.+-|..++....+--++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3457788888888899999999998887654 2234555555555558888888777665544333333222222222
Q ss_pred HhccCCchHHHHHHHHHHHhhcCCcchh-hHHHHHHHHHhcCCHHHHH---HHHhcCCC--CChhHHHHHHHH-----HH
Q 041942 278 CADLGDLEVGKKVHCTLLDMTSGVAKVL-HGNALIDMYAKCGSIERAI---EVFLGMRD--RDVSTWSTLIGG-----LA 346 (498)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~---~~~~~~~~--~~~~~~~~l~~~-----~~ 346 (498)
.-..|++..|..+++....+. |+.. .-..-+....+.|+.+.+. .++....+ .+....+.+.-- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 345679999999995544443 3322 2122344556678888777 44444432 233333333322 33
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 041942 347 FHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384 (498)
Q Consensus 347 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 384 (498)
-.++.+.|..++.++.+. ++++...|..+++-+...+
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 367889999999999884 3455667777776655544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.20 E-value=9.1 Score=33.02 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC-------CChhhHHHHHHHHHhCCChHHHH
Q 041942 205 WNVMITGYAKQGEMEKANELFNEVPK-------RDVVSWNAMISGYVLCGMNKQAL 253 (498)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~ 253 (498)
|...|-.+.-..++..|++.++.-.+ .+..+...|+.+| ..|+.+++-
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 33444444445555555555555221 2334444555554 334444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.32 Score=27.19 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.+|..++.+|...|++++|+..|++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999997643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.07 E-value=9.4 Score=32.94 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--------CCh-hHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCC-CHHHHHH
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD--------RDV-STWSTLIGGLAFHGFAEESIAMFREMQRLK--VRP-TEITFVG 375 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~~p-~~~~~~~ 375 (498)
......+.+..++++|-..|.+-.. ++. ..|-..|-.|....++..|...++.-.+.+ ..+ +..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 3344455566666665554443321 111 235555666677778888888888755422 112 3567777
Q ss_pred HHHHHhhcCCHHHHHHHHH
Q 041942 376 VLVACSHAGKVEEGKKYFK 394 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~ 394 (498)
|+.+|- .|+.+++..++.
T Consensus 234 LL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 234 LLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHhc-cCCHHHHHHHHc
Confidence 777764 477777666553
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.87 E-value=16 Score=35.24 Aligned_cols=157 Identities=8% Similarity=0.040 Sum_probs=95.0
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041942 300 GVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL 377 (498)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 377 (498)
...|.....+++..+....+++-.+.+..+|.. .+...|..++.+|... ..++-..+|+++.+ ..-+......-+
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHH
Confidence 344555566777888887777777777777763 4667788888888877 56777888888887 444444444433
Q ss_pred HHHhhcCCHHHHHHHHHHhHHhcCCCCC------hhHHHh-----hCChHHHHHHHHHHHccCCC--CCchHHHHHHHHH
Q 041942 378 VACSHAGKVEEGKKYFKLMRDEYNIEPN------IRHYGV-----HGDVELGRLANKRLLNMRKD--ESGDYVLLSNIYA 444 (498)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~y~~-----~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~ 444 (498)
--+...++...+..+|.++... +-|. .+.|.+ ..+.+.-.+...++...... -...+..+-.-|.
T Consensus 139 a~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 139 ADKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3333447788888888777662 3332 111211 12233333333333221111 1234556667777
Q ss_pred hCCCchHHHHHHHHhhh
Q 041942 445 SRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 445 ~~g~~~~A~~~~~~m~~ 461 (498)
...++++|++++.-+.+
T Consensus 217 ~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 217 ENENWTEAIRILKHILE 233 (711)
T ss_pred cccCHHHHHHHHHHHhh
Confidence 88899999999885544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.87 E-value=7.6 Score=31.52 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=57.8
Q ss_pred HhcCChHHHHHHHhcCCCCCcchHHHHH-----HHHHhcCChHHHHHHHhhCCCC--ChhhHHH-----HHHHHHhCCCh
Q 041942 182 ARRGELSMARSLFDEMPVRDLVSWNVMI-----TGYAKQGEMEKANELFNEVPKR--DVVSWNA-----MISGYVLCGMN 249 (498)
Q Consensus 182 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-----l~~~~~~~g~~ 249 (498)
.+.+..++|+.-|..+.+.+.-.|-.|. ......|+...|...|+++... .+....- -...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4455556666666665544444443332 2234556666666666666531 1111111 12234455666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 041942 250 KQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296 (498)
Q Consensus 250 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 296 (498)
+....-.+.+-..|-+.-...-..|.-+-.+.|++..|.+.|...+.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66666665555444333333344455555666666666666644444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.73 Score=36.13 Aligned_cols=66 Identities=14% Similarity=0.235 Sum_probs=46.2
Q ss_pred hhcCCHHHHHHHHHHhHHhcCCCCC---hhHHH-----hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCc
Q 041942 381 SHAGKVEEGKKYFKLMRDEYNIEPN---IRHYG-----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449 (498)
Q Consensus 381 ~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~-----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (498)
...++.+++..++..+.- +.|. ..++. ..|++.+|.++++.+.+-.+..+..-..++.++.-.|+.
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 457888889998888876 4554 33333 788888888888888776666665666666666666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.77 E-value=3.1 Score=37.91 Aligned_cols=123 Identities=12% Similarity=0.069 Sum_probs=55.9
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhhcCCc----chhhHHHHHHHHHhcCCHHHHHHHHhc-------CCCCChh------
Q 041942 274 LLTACADLGDLEVGKKVHCTLLDMTSGVA----KVLHGNALIDMYAKCGSIERAIEVFLG-------MRDRDVS------ 336 (498)
Q Consensus 274 li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~~~~~------ 336 (498)
+..++...+.++++.+.|+..+.-..-.. ...++..|...|.+..++++|.-+..+ ..-.|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 33444445555555555544443322211 233445555666666665555433322 2212221
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQR----LKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLM 396 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 396 (498)
+...|.-++...|+.-.|.+.-++..+ .|-++- ......+...|...|+.+.|..-++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122233344555655555555555433 222221 233444445566666666665555443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.36 Score=25.14 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.4
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHH
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
.+...++.++...|++++|..++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4567889999999999999998863
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.43 E-value=17 Score=34.96 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CC--hhHHHHHH
Q 041942 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RD--VSTWSTLI 342 (498)
Q Consensus 268 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~--~~~~~~l~ 342 (498)
..+-..+..++.+.|+.++|.+.++++++..+......+...|+.++...+.+.++..++.+..+ |. ..+|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 34445566777888999999999988887765444555667889999999999999998877653 22 34566654
Q ss_pred HH
Q 041942 343 GG 344 (498)
Q Consensus 343 ~~ 344 (498)
--
T Consensus 339 Lk 340 (539)
T PF04184_consen 339 LK 340 (539)
T ss_pred HH
Confidence 43
|
The molecular function of this protein is uncertain. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.7 Score=25.64 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345556666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.52 Score=27.72 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=24.3
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.+++.|+..|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3688999999999999999999999864
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.33 E-value=2.8 Score=37.30 Aligned_cols=77 Identities=5% Similarity=-0.039 Sum_probs=60.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHH-----hCCCCChHHHHHH
Q 041942 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVK-----YGFEFNRFVRNSL 146 (498)
Q Consensus 72 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 146 (498)
++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|...|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566777778888899999999888764 55788899999999999999999888888765 5777877777666
Q ss_pred HHH
Q 041942 147 IYF 149 (498)
Q Consensus 147 ~~~ 149 (498)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.22 E-value=3.2 Score=34.36 Aligned_cols=56 Identities=21% Similarity=0.266 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC------hhHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 041942 307 GNALIDMYAKCGSIERAIEVFLGMRDRD------VSTWSTLIGGLAFHGFAEESIAMFREMQ 362 (498)
Q Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 362 (498)
+..+...|.+.|+.+.|.+.|.++.+.. ...+-.+|+.....+++..+...+.+..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445555555555555555555554321 2234445555555555555555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.01 E-value=6.5 Score=34.33 Aligned_cols=161 Identities=14% Similarity=0.175 Sum_probs=87.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHh---CCC--CCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcch----hhH
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRS---VGE--RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV----LHG 307 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~---~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 307 (498)
..++..+.+.|++++.+..|++|.. +.+ .-+....+.++.-.+...+.+....+|+.-+..-...-+. .+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 3455666666666666666666542 111 1233345555554444445444444443222221111111 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC---------------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHH
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRDR---------------DVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPTEI 371 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~ 371 (498)
..|...|...+.+.+..+++.++.+. =...|..-|..|..+++-.+-..+|++...-. --|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 35666777777777777777665421 13467777888888888888788888765521 235444
Q ss_pred HHHHHHHHH-----hhcCCHHHHHHHHHHhHH
Q 041942 372 TFVGVLVAC-----SHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 372 ~~~~l~~~~-----~~~g~~~~a~~~~~~~~~ 398 (498)
... .++-| .+.|++++|-.-|-+.-+
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 443 44433 567888887654444433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.94 E-value=1.4 Score=39.09 Aligned_cols=102 Identities=18% Similarity=0.241 Sum_probs=63.8
Q ss_pred hcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC-CCCh-----hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC
Q 041942 31 NGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT-EPDT-----FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN 104 (498)
Q Consensus 31 ~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~-~~~~-----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~ 104 (498)
.|.+.++.+...++. .... ...++++...+-.+. .|+. .+-...++.+. .-++.+++.++..=.+.|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~-v~~~-~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVD-VISS-REEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhh-cccc-ccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 355666666666666 4444 566777766665554 3322 11222233332 2366677777777777788888
Q ss_pred HhhHHHHHHHhhcccchhhHHHHHHHHHHhC
Q 041942 105 KFTFSFVLKACTRLLYRNMGFCVHGKIVKYG 135 (498)
Q Consensus 105 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 135 (498)
..++..+|..+.+.++...|.++...|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888777777777776543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.88 E-value=1.1 Score=35.83 Aligned_cols=77 Identities=14% Similarity=0.158 Sum_probs=57.8
Q ss_pred HHHHHHHHH---HHhhcCCHHHHHHHHHHhHHhcCCCCC---hhHH-----HhhCChHHHHHHHHHHHccCCCCCchHHH
Q 041942 370 EITFVGVLV---ACSHAGKVEEGKKYFKLMRDEYNIEPN---IRHY-----GVHGDVELGRLANKRLLNMRKDESGDYVL 438 (498)
Q Consensus 370 ~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y-----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (498)
..+...|+. .-.+.++.+.+..++.-+.- ++|. ..++ ...|++.+|.++++.+.+-.|..+..-..
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 344555553 44677899999999999977 6666 3333 38999999999999988888888777777
Q ss_pred HHHHHHhCCCc
Q 041942 439 LSNIYASRGEW 449 (498)
Q Consensus 439 l~~~~~~~g~~ 449 (498)
++.++...|+.
T Consensus 84 lA~CL~~~~D~ 94 (160)
T PF09613_consen 84 LALCLYALGDP 94 (160)
T ss_pred HHHHHHHcCCh
Confidence 77777777764
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.79 E-value=5.4 Score=36.18 Aligned_cols=141 Identities=11% Similarity=0.094 Sum_probs=84.6
Q ss_pred ccchHHHHHHhhc-h----hhhHHHHHHHHHhcCCcChHHHHHHHHhhhhc-cC----CChHHHHHhcccCC-------C
Q 041942 5 RHRSSRLWKKCTN-L----RTLKQIQALVTINGFNSDSSALRELIYSGSVV-IP----GAINYAHKMFVKIT-------E 67 (498)
Q Consensus 5 ~~~~~~~l~~~~~-~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~----~~~~~A~~~~~~~~-------~ 67 (498)
...++.+|...+. + +....+++.+.+.|+..+..++-+.+. +... .. .....|.++++.|. .
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~-i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs 138 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALI-ILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS 138 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHH-HHHhcccccHHHHHHHHHHHHHHHHHhCccccC
Confidence 3445555555554 4 345678889999999888877766443 2221 01 23457888888886 3
Q ss_pred CChhhHHHHHHHHhccCC----hHHHHHHHHHHHhCCCCCCHh--hHHHHHHHhhccc--chhhHHHHHHHHHHhCCCCC
Q 041942 68 PDTFMYNTIIRGSAQSQN----PLDAVFLYTQMEKCSIKPNKF--TFSFVLKACTRLL--YRNMGFCVHGKIVKYGFEFN 139 (498)
Q Consensus 68 ~~~~~~~~ll~~~~~~g~----~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~ 139 (498)
++-.++..++.. ...+ .+.+..+|+.+.+.|+..+-. ..+.++..+.... ....+.++++.+.+.|+++.
T Consensus 139 ~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik 216 (297)
T PF13170_consen 139 PEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIK 216 (297)
T ss_pred ccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccc
Confidence 444556666544 3333 356778888888877766433 3333333332222 24577888888888888877
Q ss_pred hHHHHHHHH
Q 041942 140 RFVRNSLIY 148 (498)
Q Consensus 140 ~~~~~~l~~ 148 (498)
...|..+.-
T Consensus 217 ~~~yp~lGl 225 (297)
T PF13170_consen 217 YMHYPTLGL 225 (297)
T ss_pred cccccHHHH
Confidence 666654443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.70 E-value=3.3 Score=34.32 Aligned_cols=64 Identities=8% Similarity=-0.056 Sum_probs=47.3
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHhhcccchhhHHHHHHHHHHh
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN--KFTFSFVLKACTRLLYRNMGFCVHGKIVKY 134 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 134 (498)
..+..+...|++.|+.+.|++.|.++.+....|. ...+..+|+...-.+++..+...+.+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3577788888888888888888888877654443 345677777777788888887777776653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.54 E-value=9 Score=30.29 Aligned_cols=99 Identities=10% Similarity=0.001 Sum_probs=61.0
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHH
Q 041942 346 AFHGFAEESIAMFREMQRLKVRPTEITFVG-VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKR 424 (498)
Q Consensus 346 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~ 424 (498)
...++.+++..++..|.- +.|+..-... -...+...|+|++|.++|+.+.+..+..| +.+|...+-.
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p----------~~kAL~A~CL 88 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP----------YGKALLALCL 88 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch----------HHHHHHHHHH
Confidence 346778888888888776 5665332222 22445677888888888888776322222 2233333333
Q ss_pred HHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 425 LLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
....+| .|...+......|...+|..+.+.+.
T Consensus 89 ~al~Dp----~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 89 NAKGDA----EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HhcCCh----HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 222233 37777777778888888888888876
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.00 E-value=1.5 Score=37.40 Aligned_cols=49 Identities=12% Similarity=0.019 Sum_probs=31.5
Q ss_pred hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHh
Q 041942 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
+..+++.....-.++++++|+.......++.++.....+++|+..+++.
T Consensus 56 k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 56 KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 4445555555556666666666666666666666666777777666666
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.91 E-value=0.68 Score=36.82 Aligned_cols=82 Identities=11% Similarity=0.089 Sum_probs=49.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCC
Q 041942 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD 155 (498)
Q Consensus 76 ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 155 (498)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++.. +..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666677788888888888876665566777788888888877767766666511 11222334444555555
Q ss_pred hhHHHHhhc
Q 041942 156 LNTASVLFD 164 (498)
Q Consensus 156 ~~~A~~~~~ 164 (498)
+++|.-++.
T Consensus 86 ~~~a~~Ly~ 94 (143)
T PF00637_consen 86 YEEAVYLYS 94 (143)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.78 E-value=0.94 Score=25.15 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3688999999999999999999999865
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.40 E-value=0.83 Score=25.66 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=19.0
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHhcCChhHHH
Q 041942 129 GKIVKYGFEFNRFVRNSLIYFHANCGDLNTAS 160 (498)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 160 (498)
++.++.. +-+...|+.+..+|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 345667777777777777777664
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.38 E-value=19 Score=32.50 Aligned_cols=138 Identities=7% Similarity=-0.078 Sum_probs=64.9
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CchHHHHHHHHHHHhhcCCcchhhHH
Q 041942 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG-DLEVGKKVHCTLLDMTSGVAKVLHGN 308 (498)
Q Consensus 230 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (498)
.++..+-...+.++.+.++ +++...+-.+.+ .++...-...+.++...+ ....+...+...+. .++..+-.
T Consensus 139 D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~ 210 (280)
T PRK09687 139 DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRI 210 (280)
T ss_pred CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHH
Confidence 3455555555555555554 344444444443 233344444444444432 12233333323331 23334444
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 380 (498)
..+.++.+.|+....-.+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|
T Consensus 211 ~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 211 EAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 55556666665433333333333333 233455666666664 566666666652 34555555445444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.25 E-value=13 Score=30.34 Aligned_cols=28 Identities=7% Similarity=0.037 Sum_probs=15.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.+-..|+-+-.+.|++.+|...|+.+..
T Consensus 168 sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 168 SAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3445555555556666666666555543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.03 E-value=5.9 Score=31.81 Aligned_cols=107 Identities=8% Similarity=-0.013 Sum_probs=68.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV-LVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGR 419 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~ 419 (498)
++..-...++.+++..++..+.- ++|.......+ ...++..|+|.+|..+|+.+....+..|- .+|.
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~----------~kAL 83 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY----------AKAL 83 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH----------HHHH
Confidence 33445578899999999999988 67875544433 35678999999999999998774333332 2222
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 420 LANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
..+--....+ ..|...+......+-...+..+.+.+....
T Consensus 84 lA~CL~~~~D----~~Wr~~A~evle~~~d~~a~~Lv~~Ll~~~ 123 (160)
T PF09613_consen 84 LALCLYALGD----PSWRRYADEVLESGADPDARALVRALLARA 123 (160)
T ss_pred HHHHHHHcCC----hHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 2222222212 236666666666666667777777776543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.89 E-value=12 Score=34.08 Aligned_cols=128 Identities=13% Similarity=0.183 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cC----CchHHHHHHHHHHHhhcC--CcchhhHHHHHHHHHhcCCH
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACAD--LG----DLEVGKKVHCTLLDMTSG--VAKVLHGNALIDMYAKCGSI 320 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 320 (498)
+++.+.+++.|.+.|++-+..+|.+....... .. ...++..+|+.+.+.++. .++-..+.+|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788889999988888777664443333 22 356778888444444333 2223333334322 23332
Q ss_pred ----HHHHHHHhcCCC-----CC-hhHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041942 321 ----ERAIEVFLGMRD-----RD-VSTWSTLIGGLAFHGF--AEESIAMFREMQRLKVRPTEITFVGVLV 378 (498)
Q Consensus 321 ----~~A~~~~~~~~~-----~~-~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 378 (498)
+.++.+|+.+.+ .| ......++........ ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 334445554443 23 3333444433322222 3477888888888888887766665543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.76 E-value=21 Score=32.25 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=49.1
Q ss_pred HHHHHHHHHhccCCch---HHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHH
Q 041942 270 TMLSLLTACADLGDLE---VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR---DVSTWSTLIG 343 (498)
Q Consensus 270 ~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~ 343 (498)
++..++.++...+..+ +|..+++......+.+| .++-.-+..+.+.++.+++.+++.+|... ....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 4556666666665543 44445522322233223 23333455555567777777777766532 2233444444
Q ss_pred HHHh--CCCHHHHHHHHHHHHHCCCCCCH
Q 041942 344 GLAF--HGFAEESIAMFREMQRLKVRPTE 370 (498)
Q Consensus 344 ~~~~--~~~~~~A~~~~~~m~~~~~~p~~ 370 (498)
.+.. ......|...+..+....+.|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 3311 22334566666666554455544
|
It is also involved in sporulation []. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.75 E-value=0.67 Score=25.48 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 435 DYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
++..++.++.+.|++++|.+.|+++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46678999999999999999999997643
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.73 E-value=38 Score=35.26 Aligned_cols=189 Identities=13% Similarity=0.098 Sum_probs=102.8
Q ss_pred HhccCCchHHHHHHHHHHHhhcCCcch-------hhHHHHH-HHHHhcCCHHHHHHHHhcCCC--------CChhHHHHH
Q 041942 278 CADLGDLEVGKKVHCTLLDMTSGVAKV-------LHGNALI-DMYAKCGSIERAIEVFLGMRD--------RDVSTWSTL 341 (498)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l 341 (498)
.....++.+|..+..+....-+ .|+. ..+++|- ......|++++|.++-+.... +....+..+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~-~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLK-APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhC-cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456778888888744433332 2221 1222221 223346888888887765442 356677888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHH--HHHhhcCC--HHHHHHHHHHhHHhcCC-CCC--------
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEI---TFVGVL--VACSHAGK--VEEGKKYFKLMRDEYNI-EPN-------- 405 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~l~--~~~~~~g~--~~~a~~~~~~~~~~~~~-~p~-------- 405 (498)
..+..-.|++++|..+..+..+..-.-+.. .|..+. ..+...|+ ..+....+......+.. .|-
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 888889999999999888776532122222 233332 34556673 33333344444332111 111
Q ss_pred hhHHHhhCChHHHHHHHHHHHcc----CCCCC---chHHHHHHHHHhCCCchHHHHHHHHhhhCCCccC
Q 041942 406 IRHYGVHGDVELGRLANKRLLNM----RKDES---GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQ 467 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 467 (498)
...+...-+++.+..-....++. .|... ..+..|+.++...|+.++|...++++......+.
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 11111111244444333333322 22222 2234788999999999999999999976655443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.30 E-value=19 Score=32.05 Aligned_cols=55 Identities=18% Similarity=0.067 Sum_probs=48.9
Q ss_pred hHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 407 RHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 407 ~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
..|..+|.+.+|.++-++++.++|-+...|-.++..|...|+--.|..-|+++.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455899999999999999999999999999999999999998888888887753
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.21 E-value=18 Score=35.59 Aligned_cols=151 Identities=21% Similarity=0.155 Sum_probs=96.7
Q ss_pred HhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC
Q 041942 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230 (498)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 230 (498)
.-.|+++.|..++..+.+ ...+.++..+.+.|-.++|+++- +|+.. -.....+.|+++.|.++..+.
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-----~D~d~---rFelal~lgrl~iA~~la~e~-- 663 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-----TDPDQ---RFELALKLGRLDIAFDLAVEA-- 663 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-----CChhh---hhhhhhhcCcHHHHHHHHHhh--
Confidence 345777777776666553 23445666677778777777652 22221 123445778888888776654
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHH
Q 041942 231 RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNAL 310 (498)
Q Consensus 231 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 310 (498)
.+..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+-+....+- +..+..|.. |.-
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la-~~~~~~g~~------N~A 727 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA-SLAKKQGKN------NLA 727 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH-HHHHhhccc------chH
Confidence 3566788899999999999999888876653 445666666667766555444 444444421 233
Q ss_pred HHHHHhcCCHHHHHHHHhcC
Q 041942 311 IDMYAKCGSIERAIEVFLGM 330 (498)
Q Consensus 311 ~~~~~~~~~~~~A~~~~~~~ 330 (498)
.-+|...|+++++.+++.+-
T Consensus 728 F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 728 FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHcCCHHHHHHHHHhc
Confidence 44566778888888887654
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=87.02 E-value=9.6 Score=27.66 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 041942 19 RTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK 98 (498)
Q Consensus 19 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 98 (498)
+.|-.+-+.+...+-.-..++...+.+ +.. .|++++|+.+.+....||...|-.|-. .+.|-.+.+..-+..|..
T Consensus 22 qEA~tIAdwL~~~~~~~E~v~lIRlsS--LmN-rG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 22 QEANTIADWLHLKGESEEAVQLIRLSS--LMN-RGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHH--HHc-cchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 566777777766654444444444443 344 688888888888888888888876654 356666666677777776
Q ss_pred CCCCCCHhhHHH
Q 041942 99 CSIKPNKFTFSF 110 (498)
Q Consensus 99 ~~~~p~~~~~~~ 110 (498)
.| .|....|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 66 555544433
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=86.00 E-value=11 Score=27.37 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=33.6
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH
Q 041942 211 GYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTM 271 (498)
Q Consensus 211 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 271 (498)
.+...|++++|..+.+...-||...|-+|... +.|..+++..-+.+|..+| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 45566666666666666666666666555443 4555555555566666555 4433333
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=85.83 E-value=2.2 Score=30.66 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=35.0
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
...+++.++.+|+|..+...++..+...|++++|++.+-++.+...
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 3456667777899989999999999999999999998888876643
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.82 E-value=19 Score=29.97 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=55.4
Q ss_pred HHHhccCCchHHHHHHHHHHHhhcC-CcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCCh--hHHHHHHHHHHhCCCHH
Q 041942 276 TACADLGDLEVGKKVHCTLLDMTSG-VAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDV--STWSTLIGGLAFHGFAE 352 (498)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 352 (498)
..+...+++++|...++..+..... ......--.|.......|.+++|+.+++....++- .....-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 3455666677776666333322111 01111112355666778888888888888777643 33455567788888888
Q ss_pred HHHHHHHHHHHCC
Q 041942 353 ESIAMFREMQRLK 365 (498)
Q Consensus 353 ~A~~~~~~m~~~~ 365 (498)
+|..-|++....+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 8888888887765
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.71 E-value=2.1 Score=24.96 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666665543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.53 E-value=1.5 Score=24.32 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666667777777777666655
|
... |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=85.20 E-value=1.7 Score=23.61 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=25.0
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
|+.+.+..+|++++...|.++..|..++...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4678888999999988888888888877643
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.13 E-value=4.9 Score=32.88 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhCC
Q 041942 416 ELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447 (498)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (498)
++|..-|++++.++|+...++..++.+|...+
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 34555788888889998888888888888765
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=85.00 E-value=50 Score=33.98 Aligned_cols=307 Identities=8% Similarity=-0.041 Sum_probs=141.0
Q ss_pred ChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhh---HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH-hhHHHH
Q 041942 36 DSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM---YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNK-FTFSFV 111 (498)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l 111 (498)
+...|..... .+. .|++..+.++...+....... |..|...+. ....++...++++-. -.|-. ..-...
T Consensus 33 ~r~~f~~A~~-a~~--~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~ 105 (644)
T PRK11619 33 QRQRYQQIKQ-AWD--NRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-NQPAVQVTNFIRANP---TLPPARSLQSRF 105 (644)
T ss_pred HHHHHHHHHH-HHH--CCCHHHHHHHHHhccCCCcHhHHHHHHHHhccc-cCCHHHHHHHHHHCC---CCchHHHHHHHH
Confidence 4556666666 444 588988888888775332332 333322221 224454444444332 22322 233334
Q ss_pred HHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccC---CCCCcchHHHHHHHHHhcCCh-
Q 041942 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD---AKMDVVAWSSLTAGYARRGEL- 187 (498)
Q Consensus 112 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~- 187 (498)
+..+.+.+++......+ . ..+.+.........+....|+.++|....... ....+..++.++..+.+.|..
T Consensus 106 l~~La~~~~w~~~~~~~----~-~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 106 VNELARREDWRGLLAFS----P-EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHHHHHccCHHHHHHhc----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCC
Confidence 44555666666555422 1 12455666677788888888877665554432 112455666666666655543
Q ss_pred -----------------HHHHHHHhcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHH--hCC
Q 041942 188 -----------------SMARSLFDEMPVRDLV-SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYV--LCG 247 (498)
Q Consensus 188 -----------------~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~g 247 (498)
..|..+...+ .++.. ....++..+ .+...+...+.... ++...-..++.++. ...
T Consensus 181 ~~d~w~R~~~al~~~~~~lA~~l~~~l-~~~~~~~a~a~~al~---~~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~ 255 (644)
T PRK11619 181 PLAYLERIRLAMKAGNTGLVTYLAKQL-PADYQTIASALIKLQ---NDPNTVETFARTTG-PTDFTRQMAAVAFASVARQ 255 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-ChhHHHHHHHHHHHH---HCHHHHHHHhhccC-CChhhHHHHHHHHHHHHHh
Confidence 2222222222 11111 111112211 12222222222221 11111111111211 234
Q ss_pred ChHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHH
Q 041942 248 MNKQALEMFEEMRSVG-ERPDD--VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAI 324 (498)
Q Consensus 248 ~~~~a~~~~~~m~~~g-~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (498)
+.+.|..++....... ..+.. .....+.......+....+...+..... . ..+......-+..-.+.++++.+.
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~-~--~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM-R--SQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc-c--cCCcHHHHHHHHHHHHccCHHHHH
Confidence 5567777777664332 22222 1222332222332224444444422111 1 123333334444445677777777
Q ss_pred HHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 041942 325 EVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMFREMQ 362 (498)
Q Consensus 325 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 362 (498)
..+..|... ...-.-=+.+++...|+.++|..+|+++.
T Consensus 333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777776531 22222335566566777777777777763
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.98 E-value=6.1 Score=28.79 Aligned_cols=49 Identities=12% Similarity=0.185 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcC
Q 041942 353 ESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 401 (498)
+..+-++.+...++.|++......+++|.+.+++..|.++++-++.+.|
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~ 76 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG 76 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 5566677777778889999999999999999999999999988877533
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.61 E-value=0.82 Score=41.13 Aligned_cols=82 Identities=11% Similarity=0.153 Sum_probs=46.6
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHH
Q 041942 382 HAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453 (498)
Q Consensus 382 ~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (498)
..|.++.|++.+...++ +.|. ...|.+.++...|++-+..+++++|+...-|-.-..+....|+|.+|.
T Consensus 126 n~G~~~~ai~~~t~ai~---lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE---LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccc---cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 34556666666555544 3443 222225555566666666666666666655655555666666666666
Q ss_pred HHHHHhhhCCCcc
Q 041942 454 KVRKLMDDSDIKK 466 (498)
Q Consensus 454 ~~~~~m~~~~~~~ 466 (498)
..+....+.++.+
T Consensus 203 ~dl~~a~kld~dE 215 (377)
T KOG1308|consen 203 HDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHhccccH
Confidence 6666666665544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.60 E-value=4.6 Score=36.08 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=23.4
Q ss_pred CHHHHHHHHhcCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 319 SIERAIEVFLGMRD----RDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 319 ~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
++++++.++..=.+ +|..+++.+++.+.+.+++.+|..+...|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34444444433322 4555555566666666665555555555544
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=84.54 E-value=15 Score=32.78 Aligned_cols=143 Identities=13% Similarity=0.023 Sum_probs=103.3
Q ss_pred hhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC-----CCChhhHHHHHHHHhc-c-CChHHHHH
Q 041942 19 RTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT-----EPDTFMYNTIIRGSAQ-S-QNPLDAVF 91 (498)
Q Consensus 19 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~-~-g~~~~A~~ 91 (498)
++...+++.....-......-|..++. + ..-+-+|+++|+... -.|..+-..+++.... . .....-.+
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~Y~~LVk----~-N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYE 187 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFNYWDLVK----R-NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYE 187 (292)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHH----h-hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHH
Confidence 345566666555433333333777775 1 456789999998543 3455666667777655 2 24444455
Q ss_pred HHHHHHh-CCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHh-CCCCChHHHHHHHHHHHhcCChhHHHHhhccC
Q 041942 92 LYTQMEK-CSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKY-GFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166 (498)
Q Consensus 92 ~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 166 (498)
+.+.+.. .|-.++..+....|..++..+++....+++...... +..-|...|..+++.-...|+..-..++.+++
T Consensus 188 vV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 188 VVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 5555543 345788889999999999999999999999988775 66778999999999999999999999999764
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.43 E-value=24 Score=29.96 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSV 262 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 262 (498)
.+|--+...+...|+.++|..+|+-.+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 46777888888888888888888877643
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.32 E-value=2.1 Score=38.61 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=37.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
...|.++|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|+.-....+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3457778888888888877766 455 677777777777777777766665555443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.29 E-value=1.7 Score=26.18 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 437 VLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
..|+.+|...|+.+.|.+++++....|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4578899999999999999999986654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.13 E-value=7.6 Score=27.98 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHH
Q 041942 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132 (498)
Q Consensus 86 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 132 (498)
.-++.+-++.+....+.|++......+++|-+.+|+..|.++++-.+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33455556666666677777777777777777777777777777665
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.62 E-value=18 Score=30.40 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=40.3
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhc--CCcchhhHHHHHHHHHhcCCH
Q 041942 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS--GVAKVLHGNALIDMYAKCGSI 320 (498)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 320 (498)
+.+.|+ +.|...|-++...+.--++.....+.. |....+.+++..++-+.+.... ..+++..+..|+..|.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334444 456666666655553333333333333 3334555666665544444322 145556666666666666666
Q ss_pred HHHH
Q 041942 321 ERAI 324 (498)
Q Consensus 321 ~~A~ 324 (498)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 5553
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.60 E-value=6.7 Score=28.24 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
+.=++.+-++.+...++.|++......+++|.+.+++..|.++++-++.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33456666777777788899999999999999999999999999887753
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.14 E-value=20 Score=30.78 Aligned_cols=24 Identities=4% Similarity=-0.169 Sum_probs=19.1
Q ss_pred hhCChHHHHHHHHHHHccCCCCCc
Q 041942 411 VHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
..+++.+|..+|+++.....+++.
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchH
Confidence 788999999999998866555543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.05 E-value=59 Score=33.36 Aligned_cols=149 Identities=11% Similarity=0.036 Sum_probs=82.3
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCC---CHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhc
Q 041942 77 IRGSAQSQNPLDAVFLYTQMEKCSIKP---NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC 153 (498)
Q Consensus 77 l~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (498)
++.+.+.+.+++|+++-+.-.. ..| ........|..+.-.|+++.|-...-.|.. -+...|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 3456677777777777665543 233 234556666777777777777776666653 2455566666666666
Q ss_pred CChhHHHHhhccCCC-CCcchHHHHHHHHHhcCChHHHHHHHhcCC--------------------CCCcchHHHHHHHH
Q 041942 154 GDLNTASVLFDGDAK-MDVVAWSSLTAGYARRGELSMARSLFDEMP--------------------VRDLVSWNVMITGY 212 (498)
Q Consensus 154 g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------------------~~~~~~~~~l~~~~ 212 (498)
++......++=.... .+...|..++..+.. .+...-.++..+.. ..+...-..|+..|
T Consensus 437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLY 515 (846)
T ss_pred cccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHH
Confidence 665554444433332 345556666666655 33333333222221 01112223366667
Q ss_pred HhcCChHHHHHHHhhCCCCC
Q 041942 213 AKQGEMEKANELFNEVPKRD 232 (498)
Q Consensus 213 ~~~~~~~~A~~~~~~~~~~~ 232 (498)
...+++..|..++-...+++
T Consensus 516 l~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred HHccChHHHHHHHHhccChH
Confidence 77777777777776666543
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=83.02 E-value=34 Score=30.50 Aligned_cols=128 Identities=12% Similarity=-0.052 Sum_probs=60.0
Q ss_pred CCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHH----HHhCCCCCCHhhHHHHHHHhhcccchh-hHHH
Q 041942 52 PGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQ----MEKCSIKPNKFTFSFVLKACTRLLYRN-MGFC 126 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~~~~~li~~~~~~~~~~-~a~~ 126 (498)
++++++|.+++-.. ...+.+.|+...|-++-.. +.+.+.++|......++..+...+.-+ .-..
T Consensus 3 ~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~ 71 (260)
T PF04190_consen 3 QKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKK 71 (260)
T ss_dssp TT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHH
T ss_pred cccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHH
Confidence 45666776665332 2334556665554443333 334456666665555555544332211 2233
Q ss_pred HHHHHHH---hC--CCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHH
Q 041942 127 VHGKIVK---YG--FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMA 190 (498)
Q Consensus 127 ~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 190 (498)
+.+.+++ .| ..-++.....+...|.+.|++.+|+..|=....++...+..++..+...|...++
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~ 140 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA 140 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch
Confidence 3333332 22 2235667777778888888888887776555444444443445444445544443
|
; PDB: 3LKU_E 2WPV_G. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=83.01 E-value=41 Score=31.42 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=48.3
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP---TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
....+|..++..+.+.|+++.|...+.++...+... .+.....-+...-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355678888999999999999999999888743211 233444445566677888999988888776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=82.76 E-value=4.2 Score=25.69 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=13.1
Q ss_pred hhCChHHHHHHHHHHHccCCCCCc
Q 041942 411 VHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
+.|++++|.+..+.+++.+|++..
T Consensus 13 kl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 13 KLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HhhhHHHHHHHHHHHHhhCCCcHH
Confidence 555666666666666666666543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=82.43 E-value=63 Score=33.24 Aligned_cols=97 Identities=5% Similarity=-0.122 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhcCCcChHHHH-HHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhC
Q 041942 21 LKQIQALVTINGFNSDSSALR-ELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC 99 (498)
Q Consensus 21 a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 99 (498)
..++...+.++.-.|-..... .-+. .+.+ .+++....+.+.. ++.+...-.....+....|+.++|......+-..
T Consensus 82 ~~ev~~Fl~~~~~~P~~~~Lr~~~l~-~La~-~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 82 AVQVTNFIRANPTLPPARSLQSRFVN-ELAR-REDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHH-HHHH-ccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 345555555554333333322 2233 4556 6777777773322 2344544555667777788877777777777655
Q ss_pred CCCCCHhhHHHHHHHhhcccch
Q 041942 100 SIKPNKFTFSFVLKACTRLLYR 121 (498)
Q Consensus 100 ~~~p~~~~~~~li~~~~~~~~~ 121 (498)
| ...+.....++..+.+.|.+
T Consensus 159 g-~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 159 G-KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred C-CCCChHHHHHHHHHHHcCCC
Confidence 5 33455666677666655443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.32 E-value=11 Score=27.57 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 251 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++....+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 556666777777888999999999999999999999999994444444432 225655554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.20 E-value=13 Score=31.20 Aligned_cols=67 Identities=12% Similarity=-0.010 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhcc-------CCCCCcchHHHHHHHHHhcCChHHH
Q 041942 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG-------DAKMDVVAWSSLTAGYARRGELSMA 190 (498)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A 190 (498)
.|.+.|-.+...+.--++....+|...|. ..+.+++..++.. ....|+..+.+|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444443334444444444443 3344444444422 1123455555555555555555554
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.17 E-value=8.5 Score=34.40 Aligned_cols=76 Identities=9% Similarity=-0.042 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 367 RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 367 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
..|+..|...+....+.|.+.+.-.++.++.+.++.+.| ...|...++++.++.+|.+.+.++|++|..|....
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 345666666666666777788888888888775555555 33445889999999999999999999999887665
Q ss_pred HH
Q 041942 441 NI 442 (498)
Q Consensus 441 ~~ 442 (498)
..
T Consensus 184 r~ 185 (435)
T COG5191 184 RM 185 (435)
T ss_pred HH
Confidence 44
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.04 E-value=2.3 Score=40.29 Aligned_cols=93 Identities=6% Similarity=0.082 Sum_probs=71.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhhcCCHHHHHHHHHHhHHhcCCCCC-h-------hHHHhh
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVL-VACSHAGKVEEGKKYFKLMRDEYNIEPN-I-------RHYGVH 412 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~y~~~ 412 (498)
+..+...+.++.|+.++.++++ +.||...|-..= .++.+.+++..|..-+..+++ ..|+ + ....+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhH
Confidence 4456677899999999999999 678766554443 788999999999988888877 4576 2 233377
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHH
Q 041942 413 GDVELGRLANKRLLNMRKDESGDYVLL 439 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~l 439 (498)
+.+.+|...|+....+.|+++.+...+
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 788999999999999999987654443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=80.63 E-value=42 Score=30.03 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=29.7
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhCCCHHHHHHHH
Q 041942 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMRD-----RDVSTWSTLIGGLAFHGFAEESIAMF 358 (498)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~ 358 (498)
.++..+...++..++..+++.+-.++++.... .|...|..+|......|+..-..++.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34444444555555555555555555543331 25555666666666666554444333
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=80.37 E-value=27 Score=27.64 Aligned_cols=90 Identities=12% Similarity=0.139 Sum_probs=55.9
Q ss_pred HHHHhcCCcCh--HHHHHHHHhhhhccCCChHHHHHhcccCC---------CCChhhHHHHHHHHhccCC-hHHHHHHHH
Q 041942 27 LVTINGFNSDS--SALRELIYSGSVVIPGAINYAHKMFVKIT---------EPDTFMYNTIIRGSAQSQN-PLDAVFLYT 94 (498)
Q Consensus 27 ~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~ll~~~~~~g~-~~~A~~~~~ 94 (498)
.|.+.+..++. ...+.++. .... -+++....++++.+. ..+..+|+.++.+.++..- --.+..+|.
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~-hl~~-~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~ 104 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILN-HLAS-YQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFN 104 (145)
T ss_pred HhhhcccChhHHHHHHHHHHH-HHHH-ccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHH
Confidence 34444444443 23455565 4444 667777777776664 2344567777777765555 345677777
Q ss_pred HHHhCCCCCCHhhHHHHHHHhhcc
Q 041942 95 QMEKCSIKPNKFTFSFVLKACTRL 118 (498)
Q Consensus 95 ~m~~~~~~p~~~~~~~li~~~~~~ 118 (498)
.|.+.+.+++..-|..+|.++.+-
T Consensus 105 ~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 105 FLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHcC
Confidence 777766777777777777776554
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.02 E-value=3.2 Score=21.82 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 434 GDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
.+|..++..+...|++++|...+++..+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45788889999999999999999887653
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.4 bits (147), Expect = 4e-10
Identities = 16/160 (10%), Positives = 48/160 (30%), Gaps = 7/160 (4%)
Query: 252 ALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT--SGVAKVLHGNA 309
+ +L+ C L + + + + NA
Sbjct: 111 EQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNA 170
Query: 310 LIDMYAKCGSIERAIEVFLGMRDR----DVSTWSTLIGGLAFHGFAEESIA-MFREMQRL 364
++ +A+ G+ + + V ++D D+ +++ + + +I +M +
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230
Query: 365 KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404
++ + +L A ++ K + P
Sbjct: 231 GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPP 270
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 1e-08
Identities = 10/123 (8%), Positives = 37/123 (30%), Gaps = 8/123 (6%)
Query: 308 NALIDMYAKCGSIERAIEVFLGMRDR-------DVSTWSTLIGGLAFHGFAEESIAMFRE 360
A + A + + + + ++ ++ G A G +E + +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 361 MQRLKVRPTEITFVGVLVACSHAGKVEEG-KKYFKLMRDEYNIEPNIRHYGVHGDVELGR 419
++ + P +++ L + ++ + M E + + + +
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
Query: 420 LAN 422
+
Sbjct: 251 VLK 253
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.3 bits (126), Expect = 1e-07
Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 7/93 (7%)
Query: 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPKR-------DVVSWNAMISGYVLCGMNKQA 252
++ A+ L + + +NA++ G+ G K+
Sbjct: 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKEL 184
Query: 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285
+ + ++ G PD ++ + L
Sbjct: 185 VYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.7 bits (109), Expect = 2e-05
Identities = 29/231 (12%), Positives = 60/231 (25%), Gaps = 8/231 (3%)
Query: 55 INYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114
+ H K MYN ++ G A+ + V++ ++ + P+ +++ L+
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 115 CTRL-LYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD-----GDAK 168
R ++ + G + L+ L +
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 169 MDVVAWSSLTAGYARRGELSMARSLF--DEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226
V L YA+ G +S + + ++ + +EK
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 329
Query: 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTA 277
EV + + E R L LL
Sbjct: 330 EVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDE 380
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 5e-07
Identities = 62/476 (13%), Positives = 120/476 (25%), Gaps = 158/476 (33%)
Query: 60 KMFVK-ITEPD-TFMYNTIIRGSAQSQNPLDAVFLY-TQMEKCSIKPNKFTFSFV----- 111
+ FV+ + + F+ + I + + P +Y Q ++ F V
Sbjct: 80 QKFVEEVLRINYKFLMSPI---KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 112 ---LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGD--LNTASVLFDGD 166
L+ L + G + G G + V
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVL---G-----------------SGKTWV-ALDVCLSYK 175
Query: 167 --AKMDV-VAWSSLTAGYARRGE--LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKA 221
KMD + W L E L M + L ++ + + ++
Sbjct: 176 VQCKMDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 222 -NELFNEVPK-------RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDV--TM 271
L P +V N +A F ++ +
Sbjct: 234 LRRLLKSKPYENCLLVLLNV--QN------------AKAWNAF-----------NLSCKI 268
Query: 272 LSLLTACADLGD-LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330
L L T + D L H +L + L + + + K L
Sbjct: 269 L-LTTRFKQVTDFLSAATTTHISLDHHSMT----LTPDEVKSLLLKY----------LDC 313
Query: 331 RDRDVSTWSTLIGGLAFHGFAE---ESIAM---FREMQRLKVRPTEITFVGVLVACSHAG 384
R +D+ AE + +A ++ + K+ + + VL
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL------- 366
Query: 385 KVEEGKKYFK---LMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSN 441
+ E +K F + +I + L +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTIL----------LSLI--------------------- 395
Query: 442 IYASRGEW-NRVEKVRKLMDDSDIKKQPGCSLIEADDKAFLQYL----FNLKPKPN 492
W + ++ ++ + K SL+E K + LK K
Sbjct: 396 -------WFDVIKSDVMVVVNKLHKY----SLVEKQPKESTISIPSIYLELKVKLE 440
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 498 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.59 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.56 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.48 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.46 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.41 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.31 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.26 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.23 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.14 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.13 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.12 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.09 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.09 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.07 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.06 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.01 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.0 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.98 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.97 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.93 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.88 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.87 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.85 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.84 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.83 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.83 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.82 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.81 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.81 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.8 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.8 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.79 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.79 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.79 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.79 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.73 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.72 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.71 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.68 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.67 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.65 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.64 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.63 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.62 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.61 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.6 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.59 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.59 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.57 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.55 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.51 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.5 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.49 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.49 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.48 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.48 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.48 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.46 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.45 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.44 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.43 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.43 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.42 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.42 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.41 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.41 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.41 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.4 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.39 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.39 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.39 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.38 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.32 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.31 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.31 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.3 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.29 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.28 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.26 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.25 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.25 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.23 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.23 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.21 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.18 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.16 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.16 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.15 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.15 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.15 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.13 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.12 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.11 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.07 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.07 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.06 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.04 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.02 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.98 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.95 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.89 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.89 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.86 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.86 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.85 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.78 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.78 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.76 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.72 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.68 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.65 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.63 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.62 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.57 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.53 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.52 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.42 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.4 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.27 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.25 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.21 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.21 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.18 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.17 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.17 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.11 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.09 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.07 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.05 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.87 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.62 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.57 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.52 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.5 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.48 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.35 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.1 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.08 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.07 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.88 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.73 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.71 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.67 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.63 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.47 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.46 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.55 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.46 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.98 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.96 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.86 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.74 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 93.65 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.19 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.62 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.12 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 92.0 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 91.64 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.54 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.92 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.82 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.63 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.62 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.38 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.12 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 90.05 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.24 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.88 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.07 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.71 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.3 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.25 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.25 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.13 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 85.67 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.33 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.14 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.94 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.44 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.24 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 84.03 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.13 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 82.22 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 81.4 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 80.77 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 80.18 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=313.52 Aligned_cols=423 Identities=9% Similarity=-0.035 Sum_probs=355.2
Q ss_pred CcChHHHHHHHHhhhhccCCChHHHHHhcccCC--CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 041942 34 NSDSSALRELIYSGSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFV 111 (498)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 111 (498)
.++...++.++. .+.+ .|++++|..+|+++. .|+..++..++..|.+.|++++|..+|+.+.. .+++..+++.+
T Consensus 81 ~~~~~~~~~~~~-~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRH-DALM-QQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHH-HHHH-TTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHH-ccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHH
Confidence 467778888888 7888 888888888888876 67778888888888888888888888888754 36778888888
Q ss_pred HHHhhcccchhhHHHHHHHHHHh---------------CCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCC---cch
Q 041942 112 LKACTRLLYRNMGFCVHGKIVKY---------------GFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMD---VVA 173 (498)
Q Consensus 112 i~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~ 173 (498)
+.++.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.+ ...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 88888888888888888853221 223467888888888888888888888888765422 222
Q ss_pred HH--------------------------------------HHHHHHHhcCChHHHHHHHhcCC--CCCcchHHHHHHHHH
Q 041942 174 WS--------------------------------------SLTAGYARRGELSMARSLFDEMP--VRDLVSWNVMITGYA 213 (498)
Q Consensus 174 ~~--------------------------------------~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~ 213 (498)
+. .++..|.+.|++++|.++|+++. +++..+|..++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 22 22455667899999999999998 488899999999999
Q ss_pred hcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHH
Q 041942 214 KQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKV 290 (498)
Q Consensus 214 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 290 (498)
+.|++++|.++|+++.+ .+..++..++.+|.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|..+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999863 467889999999999999999999999998654 55788999999999999999999999
Q ss_pred HHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 041942 291 HCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR 367 (498)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 367 (498)
|++..... +.+..+|+.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +
T Consensus 396 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 472 (597)
T 2xpi_A 396 FSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q 472 (597)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 96665533 34577889999999999999999999988753 478899999999999999999999999999853 3
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc---CCCCC--hhH-------HHhhCChHHHHHHHHHHHccCCCCCch
Q 041942 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEY---NIEPN--IRH-------YGVHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 368 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~-------y~~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
.+..+|..++..|.+.|++++|.++++++.+.. +..|+ ... |.+.|++++|...++++++.+|+++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 468899999999999999999999999998721 66787 333 349999999999999999999999999
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 436 YVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
|..++.+|.+.|++++|.+.++++.+...
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999987543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=314.33 Aligned_cols=404 Identities=11% Similarity=0.048 Sum_probs=284.3
Q ss_pred CCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHH
Q 041942 52 PGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 131 (498)
.|.+..+...+..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp ----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 56667777777777777778888888888888888888888888874 4567777778888888888888888888877
Q ss_pred HHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC-------------------CcchHHHHHHHHHhcCChHHHHH
Q 041942 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM-------------------DVVAWSSLTAGYARRGELSMARS 192 (498)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~A~~ 192 (498)
... +++..+++.++.+|.+.|++++|.++|+++.+. +..+|+.++.+|.+.|++++|+.
T Consensus 144 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 144 DLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp CGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 543 567778888888888888888888888754433 36678888888888888888888
Q ss_pred HHhcCC--CCC-cchHHHH--------------------------------------HHHHHhcCChHHHHHHHhhCCC-
Q 041942 193 LFDEMP--VRD-LVSWNVM--------------------------------------ITGYAKQGEMEKANELFNEVPK- 230 (498)
Q Consensus 193 ~~~~~~--~~~-~~~~~~l--------------------------------------~~~~~~~~~~~~A~~~~~~~~~- 230 (498)
+|+++. .|+ ...+..+ +..|.+.|++++|.++|+++.+
T Consensus 222 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 222 CYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC
Confidence 888776 232 2222222 3445567778888888888776
Q ss_pred -CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHH
Q 041942 231 -RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309 (498)
Q Consensus 231 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 309 (498)
++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++++... .+.+..++..
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 378 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLA 378 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHH
Confidence 677788888888888888888888888887654 336667778888888888888888888555432 2345677777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCH
Q 041942 310 LIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV 386 (498)
Q Consensus 310 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 386 (498)
++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 8888888888888888887764 2356778888888888888888888888887743 33577778888888888888
Q ss_pred HHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHcc------CCCC-CchHHHHHHHHHhCCCchHHHH
Q 041942 387 EEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNM------RKDE-SGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
++|.++|+++.+..+..|. ...|.+.|++++|...|+++++. +|++ ..+|..++.+|.+.|++++|++
T Consensus 458 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 458 LLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888888773221111 33444778888888888888776 3433 4578888888888888888888
Q ss_pred HHHHhhhCC
Q 041942 455 VRKLMDDSD 463 (498)
Q Consensus 455 ~~~~m~~~~ 463 (498)
.++++.+.+
T Consensus 538 ~~~~~~~~~ 546 (597)
T 2xpi_A 538 ALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 888877654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-27 Score=224.86 Aligned_cols=362 Identities=12% Similarity=0.079 Sum_probs=248.8
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChh
Q 041942 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLN 157 (498)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 157 (498)
..+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 34556677777777776665532 2234445555555666677777777776666653 445666677777777777777
Q ss_pred HHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC--CC-CcchHHHHHHHHHhcCChHHHHHHHhhCCC-
Q 041942 158 TASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP--VR-DLVSWNVMITGYAKQGEMEKANELFNEVPK- 230 (498)
Q Consensus 158 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 230 (498)
+|...|+++.. .+..+|..+..++.+.|++++|...|+++. .| +...+..+...+...|++++|.+.|+++.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 77777665432 233456667777777777777777776665 33 344566666777777777777777776653
Q ss_pred --CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHH
Q 041942 231 --RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308 (498)
Q Consensus 231 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (498)
.+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.+... +.+..++.
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 241 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHG 241 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHH
Confidence 345677777888888888888888888877654 3355677777777888888888888875555443 23456667
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 385 (498)
.+...|.+.|++++|...|+++.+ | +..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCC
Confidence 777788888888888888776652 2 46677888888888888888888888887742 3456777778888888888
Q ss_pred HHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCC
Q 041942 386 VEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448 (498)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (498)
+++|.+.++++.+ ..|+ ...|.+.|++++|...|+++++++|+++.+|..++.++...|+
T Consensus 321 ~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 321 IEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 8888888888766 4454 3334477788888888888888888888888888887776653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-25 Score=211.90 Aligned_cols=363 Identities=13% Similarity=0.087 Sum_probs=217.8
Q ss_pred HHHHHhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCCh
Q 041942 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNP 86 (498)
Q Consensus 10 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~ 86 (498)
..+...|+++.|.+.+..+.+. .|+......++...+.. .|++++|...++... +.+..+|..+...+.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~-~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQ-CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3444556666666666665554 34444444444435555 677777777666554 44556677777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccC
Q 041942 87 LDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166 (498)
Q Consensus 87 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 166 (498)
++|++.|+++.+.. +.+..+|..+..++.+.|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777776532 2234456667777777777777777777776654 234455666666666677777777766654
Q ss_pred CC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHH
Q 041942 167 AK---MDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWN 237 (498)
Q Consensus 167 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~ 237 (498)
.. .+..+|..+...+.+.|++++|...|+++. +.+...|..+...+...|++++|...|++..+ .+..++.
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 32 234556666666667777777777666665 33345566666666666666666666665542 2445666
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhc
Q 041942 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC 317 (498)
Q Consensus 238 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (498)
.+...|...|++++|...|+++.+.. +.+..++..+...+.+.|++++|...+++.+... +.+..++..+...+.+.
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHc
Confidence 66666666666666666666666543 2244556666666666666666666664444432 23445555666666666
Q ss_pred CCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh
Q 041942 318 GSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSH 382 (498)
Q Consensus 318 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 382 (498)
|++++|...++++.+ | +..++..+..+|.+.|++++|...|+++.+ +.|+ ...+..+...+..
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHH
Confidence 666666666665543 2 345566666666666666666666666665 3343 4444444444433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=228.34 Aligned_cols=206 Identities=14% Similarity=0.137 Sum_probs=152.2
Q ss_pred HHHHHHHHHHhCCCCCCHh-hHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccC
Q 041942 88 DAVFLYTQMEKCSIKPNKF-TFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGD 166 (498)
Q Consensus 88 ~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 166 (498)
.+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 3455556666666655443 57778888888888888888888888888888888888888888776653321
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHHhhCC----CCChhhHHH
Q 041942 167 AKMDVVAWSSLTAGYARRGELSMARSLFDEMP----VRDLVSWNVMITGYAKQGEMEKANELFNEVP----KRDVVSWNA 238 (498)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ 238 (498)
.+.+..+.|.++|++|. .||..||++||.+|++.|++++|.++|++|. .||..+|+.
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 12344566777777776 6788888888888888888888888888775 478888888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (498)
+|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++ +.|+..+..|+..+|+.++..|..
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll-~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTL-QRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHH-HHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888 777788888888888888888765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=223.81 Aligned_cols=175 Identities=15% Similarity=0.148 Sum_probs=149.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---------chHHHHHHHHHHHhhcCCcch
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD---------LEVGKKVHCTLLDMTSGVAKV 304 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 304 (498)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++| +.|...|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf-~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIF-KQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHH-HHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHH-HHHHHhCCCCCH
Confidence 35777888888888888888888888888888888888888888876654 57788888 666778888888
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041942 305 LHGNALIDMYAKCGSIERAIEVFLGMR----DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380 (498)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 380 (498)
.+|++||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 888888888888888888888888886 4788888888888888888888888888888888888888888888888
Q ss_pred hhcCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 041942 381 SHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410 (498)
Q Consensus 381 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~ 410 (498)
++.|++++|.+++++|++ .|..|+..+|.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~ 214 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRD-LVRQVSKSTFD 214 (501)
T ss_dssp HHTTCHHHHHHHHHHHHH-HTSSBCHHHHH
T ss_pred hhCCCHHHHHHHHHHHHH-hCCCcCHHHHH
Confidence 888888888888888888 78888877776
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-23 Score=207.14 Aligned_cols=414 Identities=10% Similarity=-0.010 Sum_probs=296.2
Q ss_pred HHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 041942 38 SALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKA 114 (498)
Q Consensus 38 ~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 114 (498)
..+..+-. .+.+ .|++++|.+.|+.+. +.+..+|..+...+.+.|++++|++.|+++.+.+ +.+...+..+..+
T Consensus 26 ~~~~~~g~-~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGN-HFFT-AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHH-HHHH-TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHH-HHHH-hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 33444444 5555 677777777777765 3456667777777777777777777777776643 3355666667777
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC------CcchHHHHHHHHHhcCChH
Q 041942 115 CTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM------DVVAWSSLTAGYARRGELS 188 (498)
Q Consensus 115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~ 188 (498)
+...|++++|...|+ .... .|+ .....+..+...+....|...++..... ........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 777777777777775 3222 122 1122233444455556666666554331 1122234445566666777
Q ss_pred HHHHHHhcCCCCCcc---hHHHHHHHHHh--------cCChHHHHHHHhhCCC--CC--------hhhHHHHHHHHHhCC
Q 041942 189 MARSLFDEMPVRDLV---SWNVMITGYAK--------QGEMEKANELFNEVPK--RD--------VVSWNAMISGYVLCG 247 (498)
Q Consensus 189 ~A~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~A~~~~~~~~~--~~--------~~~~~~l~~~~~~~g 247 (498)
.+...+......+.. ....+...+.. .|++++|..+|+++.+ |+ ..++..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 777666666533332 33333333222 2478999999998875 32 225677778889999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 041942 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327 (498)
Q Consensus 248 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (498)
++++|...+++..+. .|+...+..+...+...|++++|...+++.+...+ .+..++..+...+...|++++|...|
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP--EYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999976 45688888999999999999999999977666543 45667888999999999999999999
Q ss_pred hcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCC
Q 041942 328 LGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404 (498)
Q Consensus 328 ~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 404 (498)
+++.+ .+...|..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..+-.+
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 88763 357789999999999999999999999999843 33467888899999999999999999999887322222
Q ss_pred C-----------hhHHHhh----------CChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 405 N-----------IRHYGVH----------GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 405 ~-----------~~~y~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
. ...|... |++++|...++++++.+|+++.++..++.+|...|++++|.+.|++..+..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2 1344466 999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 041942 464 I 464 (498)
Q Consensus 464 ~ 464 (498)
.
T Consensus 493 ~ 493 (537)
T 3fp2_A 493 R 493 (537)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-23 Score=205.49 Aligned_cols=410 Identities=10% Similarity=-0.049 Sum_probs=270.6
Q ss_pred hhhccCCChHHHHHhcccCC--CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhH
Q 041942 47 GSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMG 124 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 124 (498)
.+.+ .|++++|.+.|+.+. .|+..+|..+...+.+.|++++|++.|+++.+.+ +.+...|..+..++...|++++|
T Consensus 15 ~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 15 QFFR-NKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHH-TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHH-hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHH
Confidence 4444 666666666666665 4566666666666666666666666666666543 33445666666666666666666
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC----CCcchHHHH---HHHHHhcCChHHHHHHHhcC
Q 041942 125 FCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK----MDVVAWSSL---TAGYARRGELSMARSLFDEM 197 (498)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~ 197 (498)
...|+.+.+.+ +++......++..+........+.+.+..+.. ++...+... ............+...+...
T Consensus 93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 93 MFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 66666666654 23333333344433333333333333311110 000000000 00000011111111122222
Q ss_pred C----------CCCcchHHHHHHHHHh---cCChHHHHHHHhhCCC----------------C-ChhhHHHHHHHHHhCC
Q 041942 198 P----------VRDLVSWNVMITGYAK---QGEMEKANELFNEVPK----------------R-DVVSWNAMISGYVLCG 247 (498)
Q Consensus 198 ~----------~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~~~~~g 247 (498)
. +.+...+......+.. .|++++|...|+++.+ | +..++..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 1 1123344444444444 7889999888877644 1 2456778888899999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 041942 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327 (498)
Q Consensus 248 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (498)
++++|...++++.+.. |+...+..+...+...|++++|...+++.+... +.+...+..+...+...|++++|...|
T Consensus 252 ~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999988764 337788888889999999999999996665543 234567778888999999999999999
Q ss_pred hcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCC
Q 041942 328 LGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404 (498)
Q Consensus 328 ~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 404 (498)
+++. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+-.+
T Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 8764 2366788889999999999999999999988742 23467888888999999999999999999877333333
Q ss_pred C-----------hhHHHh---hCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 405 N-----------IRHYGV---HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 405 ~-----------~~~y~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+ ...|.. .|++++|...++++++.+|+++.++..++.+|...|++++|...++++.+...
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 2 223336 89999999999999999999999999999999999999999999999887554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-23 Score=205.13 Aligned_cols=418 Identities=8% Similarity=-0.042 Sum_probs=292.3
Q ss_pred HHHHHhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCCh
Q 041942 10 RLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNP 86 (498)
Q Consensus 10 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~ 86 (498)
..+...|+.+.|...+..+.+.. |++.++..+.. .+.. .|++++|.+.|+.+. +.+..+|..+..++.+.|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~-~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSA-CYVS-VGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHH-HHHH-HTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHH-HHHH-HhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence 34456688999999999999986 68888888888 8888 999999999999886 45567899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHH---hcCChhHHHHhh
Q 041942 87 LDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA---NCGDLNTASVLF 163 (498)
Q Consensus 87 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~ 163 (498)
++|+..|+++.+.+ +++......++..+........+.+.+..+...+..|+......-..... .......+...+
T Consensus 90 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 90 ADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 99999999999875 45556666666666555555555555544443332222211111100000 111111111111
Q ss_pred ccCC---------CC-CcchHHHHHHHHHh---cCChHHHHHHHhcCCC----------------C-CcchHHHHHHHHH
Q 041942 164 DGDA---------KM-DVVAWSSLTAGYAR---RGELSMARSLFDEMPV----------------R-DLVSWNVMITGYA 213 (498)
Q Consensus 164 ~~~~---------~~-~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~~~ 213 (498)
.... .+ +...+......+.. .|++++|...|+++.. | +..++..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 1111 11 23334444444444 7888888888877643 1 2356777788888
Q ss_pred hcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 214 KQGEMEKANELFNEVPK--RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 214 ~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
..|++++|...|+++.+ |+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus 249 ~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88999999888887753 446778888888888899999999998888664 345667788888888889999999988
Q ss_pred HHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 041942 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP 368 (498)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 368 (498)
++.+...+ .+...+..+...+...|++++|...++++.+ .+..++..+...|...|++++|...++++.+. .|
T Consensus 328 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~ 403 (514)
T 2gw1_A 328 DKAKELDP--ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--EN 403 (514)
T ss_dssp HHHHHTCS--SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HH
T ss_pred HHHHHhCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hh
Confidence 66655432 3456677788888888999999988887653 35678888888899999999999999888763 23
Q ss_pred C-------HHHHHHHHHHHhh---cCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCC
Q 041942 369 T-------EITFVGVLVACSH---AGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRK 430 (498)
Q Consensus 369 ~-------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~ 430 (498)
+ ...+..+...+.. .|++++|...++++.+ ..|+ ...|...|++++|...++++++++|
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK---LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 2 2377888888888 8999999999998877 3444 3445588999999999999999999
Q ss_pred CCCchHHHHH
Q 041942 431 DESGDYVLLS 440 (498)
Q Consensus 431 ~~~~~~~~l~ 440 (498)
+++..+..+.
T Consensus 481 ~~~~~~~~~~ 490 (514)
T 2gw1_A 481 TMEEKLQAIT 490 (514)
T ss_dssp SHHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 8887777663
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-22 Score=195.52 Aligned_cols=362 Identities=13% Similarity=0.058 Sum_probs=245.7
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHH
Q 041942 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147 (498)
Q Consensus 68 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 147 (498)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+...|..+..++...|+++.|...++++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345677788888888888888888888887642 4467778888888888888888888888888775 34577788888
Q ss_pred HHHHhcCChhHHHHhhccCCCCCc------chHHHH------------HHHHHhcCChHHHHHHHhcCC---CCCcchHH
Q 041942 148 YFHANCGDLNTASVLFDGDAKMDV------VAWSSL------------TAGYARRGELSMARSLFDEMP---VRDLVSWN 206 (498)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l------------~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 206 (498)
.+|...|++++|.+.|+.+...++ ..+..+ ...+.+.|++++|+..|+++. +.+...+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 888888888888888876654322 444444 344788888888888888876 55667788
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH---------
Q 041942 207 VMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSL--------- 274 (498)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--------- 274 (498)
.+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|...|+++.... +.+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHH
Confidence 888888888888888888888763 467788888888888888888888888887653 2233333333
Q ss_pred ---HHHHhccCCchHHHHHHHHHHHhhcCCcc--hhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHH
Q 041942 275 ---LTACADLGDLEVGKKVHCTLLDMTSGVAK--VLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLA 346 (498)
Q Consensus 275 ---i~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 346 (498)
...+...|++++|...|++.+...+..+. ...+..+..++.+.|++++|...++++. ..+..+|..+..+|.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 66777778888888887665554332222 3356667777777777777777777654 235677777777777
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhh-----CChHHHHH
Q 041942 347 FHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVH-----GDVELGRL 420 (498)
Q Consensus 347 ~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~-----g~~~~a~~ 420 (498)
..|++++|...++++.+ +.|+ ...+..+..+....++ ... ...|... .+.+++.+
T Consensus 341 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~----------~~~-------~~~y~~lg~~~~~~~~~~~~ 401 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQ----------SQK-------RDYYKILGVKRNAKKQEIIK 401 (450)
T ss_dssp HTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHH----------HHS-------CCSGGGSCSSTTCCTTHHHH
T ss_pred HhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhc----------ccc-------hhHHHHhCCCccCCHHHHHH
Confidence 77777777777777777 4554 3333333322211111 000 0112222 25667777
Q ss_pred HHHH-HHccCCCCCc----------hHHHHHHHHHhCCCchH
Q 041942 421 ANKR-LLNMRKDESG----------DYVLLSNIYASRGEWNR 451 (498)
Q Consensus 421 ~~~~-~~~~~~~~~~----------~~~~l~~~~~~~g~~~~ 451 (498)
.|++ +++..|++.. .+..+..+|...|+.++
T Consensus 402 ~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 402 AYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 7776 6666666432 34455555555555544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-22 Score=193.28 Aligned_cols=343 Identities=10% Similarity=-0.020 Sum_probs=207.4
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCC
Q 041942 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA 167 (498)
Q Consensus 88 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 167 (498)
.+...+....... +.+...+..+...+.+.|+++.|..+|+.+.+.. +.+..++..+..+|...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444432 3456677777777777888888888888777653 4456677777777777777777777776544
Q ss_pred C---CCcchHHHHHHHHHhcCChHHHHHHHhcCC--CC-Cc---chHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHH
Q 041942 168 K---MDVVAWSSLTAGYARRGELSMARSLFDEMP--VR-DL---VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNA 238 (498)
Q Consensus 168 ~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 238 (498)
+ .+...+..+..++.+.|++++|...|+++. .| +. ..+..++..+... .+..
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~ 148 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRS 148 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHH
Confidence 3 344566666677777777777777776665 22 22 3444333321100 1122
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (498)
+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...|++.+...+ .+...+..+...|...|
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN--DNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC--SCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcC
Confidence 2334555666666666666665543 33455566666666666666666666644444332 33455556666666666
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHH------------HHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHH
Q 041942 319 SIERAIEVFLGMRD--R-DVSTWSTL------------IGGLAFHGFAEESIAMFREMQRLKVRPT-----EITFVGVLV 378 (498)
Q Consensus 319 ~~~~A~~~~~~~~~--~-~~~~~~~l------------~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~ 378 (498)
++++|...|+++.+ | +...+..+ +..+...|++++|..+|+++.+ +.|+ ...+..+..
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH
Confidence 66666666665542 2 23333333 6777777888888888888777 3454 335666777
Q ss_pred HHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHH--------
Q 041942 379 ACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNI-------- 442 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-------- 442 (498)
.+.+.|++++|...++++.+ ..|+ ...|...|++++|...++++++++|+++.++..++.+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQ---MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence 77788888888888887766 2443 3334477888888888888888888888888887733
Q ss_pred ----HHhCC-----CchHHHHHHHHh
Q 041942 443 ----YASRG-----EWNRVEKVRKLM 459 (498)
Q Consensus 443 ----~~~~g-----~~~~A~~~~~~m 459 (498)
|...| +.+++.+.|+++
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHH
Confidence 44445 556777777763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.6e-21 Score=188.72 Aligned_cols=415 Identities=9% Similarity=-0.017 Sum_probs=305.1
Q ss_pred HHHHhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChH
Q 041942 11 LWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPL 87 (498)
Q Consensus 11 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~ 87 (498)
.+...|+.+.|...+..+.+.. +.++.++..+.. .+.. .|++++|.+.|+.+. +.+..+|..+...+...|+++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~-~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISA-CYIS-TGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHH-HHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHH-HHHH-cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHH
Confidence 4446678899999999998875 345666666666 8888 999999999999986 556788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCC--CCChHHHHHHHHHHHhcCChhHHHHhhcc
Q 041942 88 DAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGF--EFNRFVRNSLIYFHANCGDLNTASVLFDG 165 (498)
Q Consensus 88 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 165 (498)
+|+..|+.+.. .|+.. ...+..+...+....+...++.+..... .+........+..+....+.+.+...+..
T Consensus 111 ~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 111 DAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred HHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 99999974432 33322 2223445556667788888888865310 11111123345556677888888888887
Q ss_pred CCCCCcc---hHHHHHHHHHhc--------CChHHHHHHHhcCC--CCC-c-------chHHHHHHHHHhcCChHHHHHH
Q 041942 166 DAKMDVV---AWSSLTAGYARR--------GELSMARSLFDEMP--VRD-L-------VSWNVMITGYAKQGEMEKANEL 224 (498)
Q Consensus 166 ~~~~~~~---~~~~l~~~~~~~--------~~~~~A~~~~~~~~--~~~-~-------~~~~~l~~~~~~~~~~~~A~~~ 224 (498)
....+.. ....+...+... |++++|..+++++. .|+ . .++..+...+...|++++|...
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 7765544 333333333322 47899999998887 333 2 2466677888899999999999
Q ss_pred HhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc
Q 041942 225 FNEVPK--RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA 302 (498)
Q Consensus 225 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 302 (498)
|+++.+ |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++.+...+ .
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~ 342 (537)
T 3fp2_A 266 LQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP--E 342 (537)
T ss_dssp HHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--C
Confidence 998863 667788889999999999999999999998764 44678889999999999999999999977666543 3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CCCCHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-----VRPTEITFV 374 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-----~~p~~~~~~ 374 (498)
+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. .......+.
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 456778899999999999999999987763 457789999999999999999999999987632 111223355
Q ss_pred HHHHHHhhc----------CCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchH
Q 041942 375 GVLVACSHA----------GKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDY 436 (498)
Q Consensus 375 ~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~ 436 (498)
.....+... |++++|...++++.+ ..|+ ...|...|++++|...|++++++.|.+....
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACE---LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 556677777 999999999999988 3454 4445599999999999999999999887665
Q ss_pred HHH
Q 041942 437 VLL 439 (498)
Q Consensus 437 ~~l 439 (498)
..+
T Consensus 500 ~~~ 502 (537)
T 3fp2_A 500 QAT 502 (537)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-19 Score=165.93 Aligned_cols=284 Identities=12% Similarity=0.060 Sum_probs=148.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCh
Q 041942 176 SLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMN 249 (498)
Q Consensus 176 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 249 (498)
.+...+...|++++|+..|+++. +.+...+..+..++...|++++|...|+++.+ .+...+..+...+...|++
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCCh
Confidence 33344444444444444444433 22233444444444444444444444444331 2334444445555555555
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHH
Q 041942 250 KQALEMFEEMRSVGER--PDDVTMLSL------------LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315 (498)
Q Consensus 250 ~~a~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (498)
++|...+++..+.... .+...+..+ ...+...|++++|...+++.....+ .+...+..+...+.
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV--WDAELRELRAECFI 165 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHH
Confidence 5555555555433210 112222222 3455566666666666644444332 23444555666666
Q ss_pred hcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHH------------HHHHH
Q 041942 316 KCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFV------------GVLVA 379 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~------------~l~~~ 379 (498)
..|++++|...++++.+ .+..++..+...+...|++++|...++++.+. .|+ ...+. .+...
T Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~ 243 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEE 243 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655432 24556666666666666666666666666652 233 22222 12444
Q ss_pred HhhcCCHHHHHHHHHHhHHhcCCCCC---------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCch
Q 041942 380 CSHAGKVEEGKKYFKLMRDEYNIEPN---------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450 (498)
Q Consensus 380 ~~~~g~~~~a~~~~~~~~~~~~~~p~---------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (498)
+.+.|++++|...++++.+..+-.|. ...|...|++++|...++++++.+|+++.++..++.+|...|+++
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Confidence 66666666776666666652111111 123336667777777777777777777777777777777777777
Q ss_pred HHHHHHHHhhhCC
Q 041942 451 RVEKVRKLMDDSD 463 (498)
Q Consensus 451 ~A~~~~~~m~~~~ 463 (498)
+|.+.|+++.+..
T Consensus 324 ~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 324 EAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcC
Confidence 7777777776543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-18 Score=162.31 Aligned_cols=300 Identities=12% Similarity=0.040 Sum_probs=172.3
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHH
Q 041942 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYF 149 (498)
Q Consensus 70 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 149 (498)
+..+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++.|...++++.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4556677777788888888888888887643 3456677777777888888888888888887764 3356777778888
Q ss_pred HHhcCChhHHHHhhccCCCCCc------chHHHH------------HHHHHhcCChHHHHHHHhcCC---CCCcchHHHH
Q 041942 150 HANCGDLNTASVLFDGDAKMDV------VAWSSL------------TAGYARRGELSMARSLFDEMP---VRDLVSWNVM 208 (498)
Q Consensus 150 ~~~~g~~~~A~~~~~~~~~~~~------~~~~~l------------~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 208 (498)
+...|++++|...|+.....++ ..+..+ ...+...|++++|+..++++. +.+...+..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 8888888888888876544322 223222 345555666666666665554 3334455555
Q ss_pred HHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCch
Q 041942 209 ITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLE 285 (498)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 285 (498)
..++...|++++|...++++.+ .+..++..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~-------- 231 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV-------- 231 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH--------
Confidence 5555555555555555555432 234455555555555555555555555555432 1111111111000
Q ss_pred HHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-h----hHHHHHHHHHHhCCCHHHHHHHH
Q 041942 286 VGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RD-V----STWSTLIGGLAFHGFAEESIAMF 358 (498)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~----~~~~~l~~~~~~~~~~~~A~~~~ 358 (498)
. .......+...+.+.|++++|...++++.+ |+ . ..+..+..++...|++++|...+
T Consensus 232 ----------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 232 ----------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp ----------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 0 000011224445555666666655554432 21 1 12344555666666666666666
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 359 REMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 359 ~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
++..+. .| +..++..+...+...|++++|.+.++++.+
T Consensus 296 ~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 296 SEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666653 33 455666666666666666666666666655
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-20 Score=170.52 Aligned_cols=373 Identities=11% Similarity=0.089 Sum_probs=180.1
Q ss_pred CCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHH
Q 041942 52 PGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKI 131 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 131 (498)
.|++++|.+.++++..| .+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++..
T Consensus 16 ~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 16 IGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 78899999999999655 4899999999999999999999965 357779999999999999999999977777
Q ss_pred HHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHH
Q 041942 132 VKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITG 211 (498)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 211 (498)
.+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..+...|...|.+++|..+|..+ ..|..++.+
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~ 157 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAST 157 (449)
T ss_dssp -----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHH
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHH
Confidence 664 45578889999999999999999988864 67779999999999999999999999987 589999999
Q ss_pred HHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 212 YAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 212 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
+.+.|++++|.+.+.++. ++.+|..++.+|+..|+++.|......+ ...+.-...++..|.+.|++++|..++
T Consensus 158 L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 158 LVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp HHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999983 7889999999999999999996555432 233334557888999999999999999
Q ss_pred HHHHHhhcCCcchhhHHHHHHHHHh--cCCHHHHHHHHhcCCC--------CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 292 CTLLDMTSGVAKVLHGNALIDMYAK--CGSIERAIEVFLGMRD--------RDVSTWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
+..+... .-....|+-|..+|++ -+++.+.++.|..-.. .+...|..+...|...++++.|....-+-
T Consensus 231 e~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 231 EAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 6666544 3445556666666665 4567777777754432 25678999999999999999888643322
Q ss_pred HHCC-----------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--hhHHHhhCChHHHHHHHHHHHcc
Q 041942 362 QRLK-----------VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYGVHGDVELGRLANKRLLNM 428 (498)
Q Consensus 362 ~~~~-----------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~y~~~g~~~~a~~~~~~~~~~ 428 (498)
...- -..+...|-..+.-|.. ..+..--.++.-+ . ..+.|+ +..+.+.|++.-...+++.+.
T Consensus 309 ~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~-~~p~~l~~ll~~l-~-~~ld~~r~v~~~~~~~~l~l~~~yl~~v~-- 383 (449)
T 1b89_A 309 PTDAWKEGQFKDIITKVANVELYYRAIQFYLE-FKPLLLNDLLMVL-S-PRLDHTRAVNYFSKVKQLPLVKPYLRSVQ-- 383 (449)
T ss_dssp TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH-HCGGGHHHHHHHH-G-GGCCHHHHHHHHHHTTCTTTTHHHHHHHH--
T ss_pred ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh-cCHHHHHHHHHHH-H-hccCcHHHHHHHHHcCCcHHHHHHHHHHH--
Confidence 1110 01234455555555541 2222222222222 2 124444 555567777777777776655
Q ss_pred CCCCCchHHHHHHHHHhCCCchHHHHHH
Q 041942 429 RKDESGDYVLLSNIYASRGEWNRVEKVR 456 (498)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (498)
+.++..+-.++-..|...++++.-..-+
T Consensus 384 ~~n~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 384 NHNNKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3455566677778888888876544433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-18 Score=163.86 Aligned_cols=282 Identities=13% Similarity=0.070 Sum_probs=145.9
Q ss_pred hcCChhHHHH-hhccCCC---C----CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHH
Q 041942 152 NCGDLNTASV-LFDGDAK---M----DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEK 220 (498)
Q Consensus 152 ~~g~~~~A~~-~~~~~~~---~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 220 (498)
..|++++|.. .|++... . +...+..+...+.+.|++++|+..|+++. +.+...+..+..++...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3455555555 5543222 1 23345555555556666666666555554 3334455555555555555555
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHh
Q 041942 221 ANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297 (498)
Q Consensus 221 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 297 (498)
|.+.|+++.+ .+..++..+...|...|++++|...++++...... +...+..+. .....
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~---------- 178 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAE-------EGAGG---------- 178 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-------------------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH-------HHhhh----------
Confidence 5555554432 23445555555555555555555555555544211 111111000 00000
Q ss_pred hcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHH
Q 041942 298 TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEI 371 (498)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~ 371 (498)
..+. ..+..+...+ ..|++++|...|+++.+ | +..++..+...|...|++++|+..++++.+. .| +..
T Consensus 179 --~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~ 252 (368)
T 1fch_A 179 --AGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYL 252 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred --hccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHH
Confidence 0000 0000122222 55666666666655442 2 3455666666666666666666666666653 23 355
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCC-----------
Q 041942 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDE----------- 432 (498)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~----------- 432 (498)
++..+...+...|++++|...++++.+ ..|+ ...|...|++++|...+++++++.|++
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALE---LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 566666666666666666666666655 2333 233336666666666666666666665
Q ss_pred CchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 433 SGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
..+|..++.+|...|++++|..++++..
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 7899999999999999999999887543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.8e-18 Score=155.77 Aligned_cols=277 Identities=13% Similarity=0.036 Sum_probs=194.1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHH
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGY 243 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 243 (498)
+...+..+...+...|++++|+.+|+++. +.+...+..++.++...|++++|...++++.+ .+...|..+...+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 44555566666666677777777776665 34445566666677777777777777766653 3456677777777
Q ss_pred HhCC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHH
Q 041942 244 VLCG-MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322 (498)
Q Consensus 244 ~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (498)
...| ++++|...|++..+.. +.+...+..+...+...|++++|...+++.+...+ .+...+..+...|...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK--GCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT--TCSHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHhhHHH
Confidence 7777 7788888887777654 33455677777777788888888888755555443 234445557777888888888
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHhhcCCHHHHHH
Q 041942 323 AIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK--------VRPTEITFVGVLVACSHAGKVEEGKK 391 (498)
Q Consensus 323 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a~~ 391 (498)
|...+++..+ .+...+..+...+...|++++|...++++.+.. .+....++..+...+...|++++|..
T Consensus 178 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 178 AERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888876553 356778888888888888888888888877631 12335677888888888888888888
Q ss_pred HHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHH-HhCCCc
Q 041942 392 YFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIY-ASRGEW 449 (498)
Q Consensus 392 ~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 449 (498)
.++++.+..+-.+. ...|...|++++|...++++++++|+++.++..++.++ ...|+.
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 88888773222221 34444788888888888888888999988999998888 444554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-18 Score=165.66 Aligned_cols=382 Identities=10% Similarity=-0.049 Sum_probs=223.0
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhC-----C--CCC-CHhhHHHHHHHhhcccchhhHHHHHHHHHHhC-----
Q 041942 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC-----S--IKP-NKFTFSFVLKACTRLLYRNMGFCVHGKIVKYG----- 135 (498)
Q Consensus 69 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----- 135 (498)
....||.|...+...|++++|++.|++..+. + ..| ...+|+.+..++...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3557888888888888888888888876441 1 122 34567778888888888888888888776531
Q ss_pred -CC-CChHHHHHHHHHHHhc--CChhHHHHhhccCCC---CCcchHHHHHHH---HHhcCChHHHHHHHhcCC---CCCc
Q 041942 136 -FE-FNRFVRNSLIYFHANC--GDLNTASVLFDGDAK---MDVVAWSSLTAG---YARRGELSMARSLFDEMP---VRDL 202 (498)
Q Consensus 136 -~~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~---~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~---~~~~ 202 (498)
.. ....++..+..++... +++++|...|++..+ .++..+..+..+ +...++.++|++.+++.. +.+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 01 1234555555444443 457778777775443 233344444333 334566667777766655 3344
Q ss_pred chHHHHHHHHHh----cCChHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041942 203 VSWNVMITGYAK----QGEMEKANELFNEVP---KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLL 275 (498)
Q Consensus 203 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 275 (498)
..+..+...+.. .++.++|.+.+++.. ..+..++..+...|...|++++|...+++..+.. +-+..++..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 455555444433 345667777776554 2345566777777777777777777777776553 22344444444
Q ss_pred HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHH
Q 041942 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAE 352 (498)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 352 (498)
.+|...+....+. . . ..........+..+.|...++... ..+..++..+...|...|+++
T Consensus 289 ~~y~~~~~~~~~~---------~--~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 289 CCYRAKVFQVMNL---------R--E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhH---------H--H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 4332111000000 0 0 000011111233566777776654 245678899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccC
Q 041942 353 ESIAMFREMQRLKVRPTEI--TFVGVLV-ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMR 429 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~ 429 (498)
+|+..|++..+....|... .+..+.. .....|+.++|+..+++..+ +.|+.. ...+....+.+++++.++.+
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~--~~~~~~~~l~~~~~~~l~~~ 426 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSR--EKEKMKDKLQKIAKMRLSKN 426 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccH--HHHHHHHHHHHHHHHHHHhC
Confidence 9999999999854333221 2222222 34577999999999999987 666643 34455677788899999999
Q ss_pred CCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCccCCceeEE
Q 041942 430 KDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIKKQPGCSLI 473 (498)
Q Consensus 430 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 473 (498)
|+++.+|..|+.+|...|++++|++.|++..+.|...+...+|+
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999999999999999999999887666666665
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-17 Score=154.66 Aligned_cols=278 Identities=12% Similarity=0.033 Sum_probs=160.4
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHH
Q 041942 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSL 146 (498)
Q Consensus 67 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 146 (498)
..+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+..++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4566677777888888888888888888887653 4455667677777788888888888888888764 3456677777
Q ss_pred HHHHHhcC-ChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChH
Q 041942 147 IYFHANCG-DLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEME 219 (498)
Q Consensus 147 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 219 (498)
...+...| ++++|...|++... .+...|..+...+...|++++|+..++++. +.+...+..+...+...|+++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 77777777 77777777765332 344556666666666666666666666554 223344444445555555555
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhc
Q 041942 220 KANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTS 299 (498)
Q Consensus 220 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 299 (498)
+|.+.|+ +..+.. +.+...+..+...+...|++++|...+++.+....
T Consensus 177 ~A~~~~~-------------------------------~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 177 LAERFFS-------------------------------QALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp HHHHHHH-------------------------------HHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-------------------------------HHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 5555554 444332 22334444444444444444444444433333221
Q ss_pred C-------CcchhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-
Q 041942 300 G-------VAKVLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP- 368 (498)
Q Consensus 300 ~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p- 368 (498)
. +.....+..+...+...|++++|...+++.. ..+...|..+..+|...|++++|.+.++++.+ +.|
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~ 302 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRD 302 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSC
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCC
Confidence 0 1223344455555555555555555555443 12445555566666666666666666666555 334
Q ss_pred CHHHHHHHHHHH
Q 041942 369 TEITFVGVLVAC 380 (498)
Q Consensus 369 ~~~~~~~l~~~~ 380 (498)
+...+..+..++
T Consensus 303 ~~~~~~~l~~~~ 314 (330)
T 3hym_B 303 DTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 344444444444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-17 Score=152.03 Aligned_cols=293 Identities=12% Similarity=0.067 Sum_probs=138.9
Q ss_pred cchHHHHHHhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCC
Q 041942 6 HRSSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQN 85 (498)
Q Consensus 6 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 85 (498)
.....+|..+|+++.|.++.+.+ +++.+|..+.. ++.+ .|++++|.+.|.+. +|...|..++..+...|+
T Consensus 7 ~a~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~-A~l~-~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 7 SAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAK-AQLQ-KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHhC------CChHHHHHHHH-HHHH-cCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCC
Confidence 44566888999999999998888 33459999998 8999 99999999999764 677799999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhcc
Q 041942 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165 (498)
Q Consensus 86 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 165 (498)
+++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988777663 5567889999999999999999988884 36778999999999999999999999997
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 041942 166 DAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL 245 (498)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 245 (498)
+ ..|..++.++.+.|++++|.+.++++. ++.+|..++.+|+..|+++.|......+. ..+.....++..|.+
T Consensus 148 a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 148 V-----SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQD 219 (449)
T ss_dssp T-----TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHH
T ss_pred h-----hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHH
Confidence 7 589999999999999999999999983 88999999999999999999988877765 444445578999999
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--CCchHHHHHHHHHHHhhcCCc------chhhHHHHHHHHHhc
Q 041942 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADL--GDLEVGKKVHCTLLDMTSGVA------KVLHGNALIDMYAKC 317 (498)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 317 (498)
.|++++|..+++...... +.....|+.+.-++++- ++..+..+.| ...-.+++ +...|..++..|...
T Consensus 220 ~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~---~~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 220 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF---WSRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH---STTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH---HHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999988554 44566676666666543 4444555544 22222222 467788899999999
Q ss_pred CCHHHHHHHHhc
Q 041942 318 GSIERAIEVFLG 329 (498)
Q Consensus 318 ~~~~~A~~~~~~ 329 (498)
++++.|....-.
T Consensus 296 ~e~d~A~~tm~~ 307 (449)
T 1b89_A 296 EEYDNAIITMMN 307 (449)
T ss_dssp TCHHHHHHHHHH
T ss_pred chHHHHHHHHHh
Confidence 999988876544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-16 Score=161.81 Aligned_cols=361 Identities=12% Similarity=0.097 Sum_probs=231.9
Q ss_pred hhhccCCChHHHHHhcccCC-CCC-----hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccc
Q 041942 47 GSVVIPGAINYAHKMFVKIT-EPD-----TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY 120 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~-~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 120 (498)
.|.. .|.+.+|.++++++. .|+ ....+.|+....+. +..+..+..++.... . ..-+...+...|.
T Consensus 994 af~~-aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-d------~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 994 AFMT-ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-D------APDIANIAISNEL 1064 (1630)
T ss_pred HHHh-CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-c------HHHHHHHHHhCCC
Confidence 4555 677777777776665 222 23445555555554 445555555544321 1 1224455566677
Q ss_pred hhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 041942 121 RNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVR 200 (498)
Q Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 200 (498)
+++|..+|++.. -.....+.++ ...|++++|.++.++.. +..+|..+..++...|++++|+..|.+. .
T Consensus 1065 yEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--d 1132 (1630)
T 1xi4_A 1065 FEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--D 1132 (1630)
T ss_pred HHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--C
Confidence 777777776642 1111112222 25666777777776553 3556777777777777777777777664 4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041942 201 DLVSWNVMITGYAKQGEMEKANELFNEVPK--RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278 (498)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 278 (498)
|...|..++.++.+.|++++|.+.|....+ ++....+.++.+|++.+++++....+ . .++...+..+...|
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRC 1205 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHH
Confidence 566667777777777777777777766543 33333445777777777766433332 1 34555666677777
Q ss_pred hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHH
Q 041942 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMF 358 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 358 (498)
...|++++|..+|.. ...|..+...|.+.|++++|.+.+++. .+..+|..+..+|...|++..|....
T Consensus 1206 e~eg~YeeA~~~Y~k----------A~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNN----------VSNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HhcCCHHHHHHHHHh----------hhHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 777777777777732 236677777777777788887777766 35577777777777777777777654
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHH-------H--hhCChHHHHHHHHHHHcc
Q 041942 359 REMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHY-------G--VHGDVELGRLANKRLLNM 428 (498)
Q Consensus 359 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y-------~--~~g~~~~a~~~~~~~~~~ 428 (498)
.. +..++..+..++..|.+.|.+++|+.+++.... ++|. ...| . +-++..++.+.|..-+++
T Consensus 1274 l~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1274 LH-----IVVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred Hh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 43 334556667888888888999999998877644 4443 2222 1 566777777888777776
Q ss_pred CC-----CCCchHHHHHHHHHhCCCchHHHHH
Q 041942 429 RK-----DESGDYVLLSNIYASRGEWNRVEKV 455 (498)
Q Consensus 429 ~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 455 (498)
.| .+...|..++..|.+.|+++.|...
T Consensus 1346 ~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1346 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred chHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 66 6778899999999999999988853
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-15 Score=151.34 Aligned_cols=403 Identities=12% Similarity=0.053 Sum_probs=263.2
Q ss_pred CcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 041942 34 NSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSF 110 (498)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 110 (498)
+-+...|..++. . .+ .|++++|..+|+++. +.+...|..++..+.+.|++++|..+|++.... .|+...|..
T Consensus 10 P~~~~~w~~l~~-~-~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-E-AQ-NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-H-HH-SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHH
T ss_pred CCCHHHHHHHHH-H-HH-hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHH
Confidence 346677888887 4 56 799999999999986 445668999999999999999999999999875 468777777
Q ss_pred HHHHh-hcccchhhHHH----HHHHHHHh-CCCC-ChHHHHHHHHHHHh---------cCChhHHHHhhccCCC-CCc--
Q 041942 111 VLKAC-TRLLYRNMGFC----VHGKIVKY-GFEF-NRFVRNSLIYFHAN---------CGDLNTASVLFDGDAK-MDV-- 171 (498)
Q Consensus 111 li~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~~-- 171 (498)
.+... ...|+.+.|.+ +|+..++. |..| +...|...+..... .|+++.|..+|++... |..
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 76533 34577777665 66666553 5443 46678887777655 6788888888876554 221
Q ss_pred -chHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhh-------CC------CCC-----
Q 041942 172 -VAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNE-------VP------KRD----- 232 (498)
Q Consensus 172 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~------~~~----- 232 (498)
..|..........| ...+..++.. +.+++..|..++.. +. .|+
T Consensus 165 ~~~~~~~~~~e~~~~-~~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 165 EQLWRDYNKYEEGIN-IHLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHHHHHC-HHHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHHHHHhhc-hhHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 12222111100001 0111111110 12233444433332 11 111
Q ss_pred ---hhhHHHHHHHHHhC----CCh----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-------cCCch-------HH
Q 041942 233 ---VVSWNAMISGYVLC----GMN----KQALEMFEEMRSVGERPDDVTMLSLLTACAD-------LGDLE-------VG 287 (498)
Q Consensus 233 ---~~~~~~l~~~~~~~----g~~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~~~~~-------~a 287 (498)
...|...+...... ++. .++..+|++..... +-+...|......+.. .|+++ +|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 13444444333222 222 36777888877652 3456677777766654 68876 78
Q ss_pred HHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Ch-hHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DV-STWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
..+|++.+... .+.+...+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|++++|.++|++..+
T Consensus 306 ~~~~~~Al~~~-~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 306 ANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHTTTT-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88885555321 234567778888888888999999988887653 3 33 4788888888888899999999999887
Q ss_pred CCCCCC-HHHHHHHHHH-HhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCc--
Q 041942 364 LKVRPT-EITFVGVLVA-CSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESG-- 434 (498)
Q Consensus 364 ~~~~p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~-- 434 (498)
. .|+ ...|...... +...|+.++|..+|++..+..+-.|+ +..+.+.|+.++|+.+|++++...|.++.
T Consensus 385 ~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 385 D--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp C--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred c--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 4 343 3333332222 33578999999999988874332222 22333788999999999999988776665
Q ss_pred --hHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 435 --DYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 435 --~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.|...+......|+.+.+..+++++.+.-
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 88888999999999999999999987654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-15 Score=148.24 Aligned_cols=314 Identities=11% Similarity=0.020 Sum_probs=154.1
Q ss_pred ChhhHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhc----ccchhhHHHHHHHHHHhCCCCCh
Q 041942 69 DTFMYNTIIRGSAQ----SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR----LLYRNMGFCVHGKIVKYGFEFNR 140 (498)
Q Consensus 69 ~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 140 (498)
+..++..+...|.. .+++++|+..|++..+.| +...+..|-..+.. .++.++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444444444444 556666666666655543 33444445454544 555666666666655543 34
Q ss_pred HHHHHHHHHHHh----cCChhHHHHhhccCCC-CCcchHHHHHHHHHh----cCChHHHHHHHhcCC-CCCcchHHHHHH
Q 041942 141 FVRNSLIYFHAN----CGDLNTASVLFDGDAK-MDVVAWSSLTAGYAR----RGELSMARSLFDEMP-VRDLVSWNVMIT 210 (498)
Q Consensus 141 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~ 210 (498)
..+..|...|.. .+++++|...|++... .++..+..+...|.. .+++++|...|++.. ..+...+..+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444455555555 4555555555554322 233344444444444 445555555555443 233444444444
Q ss_pred HHHh----cCChHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-
Q 041942 211 GYAK----QGEMEKANELFNEVPK-RDVVSWNAMISGYVL----CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD- 280 (498)
Q Consensus 211 ~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~- 280 (498)
.|.. .++.++|.+.|++..+ .+..++..+...|.. .+++++|..+|++..+.| +...+..+...+..
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQG 268 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCC
Confidence 4544 4555555555554432 234444455555543 455555555555555443 22333333333433
Q ss_pred ---cCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhc-----CCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCC--
Q 041942 281 ---LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKC-----GSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHG-- 349 (498)
Q Consensus 281 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~-- 349 (498)
.++.++|...|++.... + +...+..|...|... ++.++|...|++..+ .+...+..+...|...|
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQ-G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSE 344 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCH
T ss_pred CCCCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc
Confidence 45555555555333322 1 122333444444444 555555555554432 23444555555555444
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHhHH
Q 041942 350 -FAEESIAMFREMQRLKVRPTEITFVGVLVACSH----AGKVEEGKKYFKLMRD 398 (498)
Q Consensus 350 -~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 398 (498)
++++|+++|++..+.| +...+..+...|.. .+++++|.+.+++..+
T Consensus 345 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 4555666666555532 34444455555554 4555555555555544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=156.83 Aligned_cols=268 Identities=14% Similarity=0.112 Sum_probs=185.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHH
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGY 243 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 243 (498)
+...+..+...+.+.|++++|+..|+++. +.+..+|..+..++...|++++|...|+++.+ .+..+|..+...|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45568888888888899999999888887 55667888888888888888888888887763 4567888888888
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 244 VLCGMNKQALEMFEEMRSVGERPD-----------DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
...|++++|...++++.+.. |+ ...+..+...+...|++++|...+++.+...+...+...+..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888888887642 22 122233466777788888888888666665544335667777777
Q ss_pred HHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHH
Q 041942 313 MYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEE 388 (498)
Q Consensus 313 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 388 (498)
.|...|++++|...|+++.+ .+..+|..+..+|...|++++|+..|+++.+. .|+ ..++..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHH
Confidence 78888888888887776552 35667777888888888888888888877773 343 6677777777777777777
Q ss_pred HHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHH
Q 041942 389 GKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKL 458 (498)
Q Consensus 389 a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (498)
|...++++.+. .|+...- . .......+..+|..++.++...|+.+.|..+.++
T Consensus 300 A~~~~~~al~~---~~~~~~~------~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSL---QRKSRNQ------Q--------QVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHH---HHCC--------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHh---CcccCCC------c--------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 77777777661 2210000 0 0000011467899999999999999988887665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-15 Score=152.09 Aligned_cols=350 Identities=12% Similarity=0.108 Sum_probs=273.9
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHhCCC--CCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHH
Q 041942 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSI--KPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNS 145 (498)
Q Consensus 68 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 145 (498)
.++.--...++.|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..++.++....... + ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence 3444456678889999999999999999984321 12345566677776666 556666666665422 1 344
Q ss_pred HHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 041942 146 LIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELF 225 (498)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 225 (498)
+...+...|.+++|..+|++... .....+.+ +-..+++++|.++.++.. ++.+|..+..++.+.|++++|...|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-NTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 77888999999999999998742 11222223 227889999999999773 5778999999999999999999999
Q ss_pred hhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchh
Q 041942 226 NEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305 (498)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (498)
.+. .|...|..++..+.+.|++++|.+.|...++.. ++....+.++.+|++.++++....+. . .++..
T Consensus 1129 iKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI------~--~~n~a 1196 (1630)
T 1xi4_A 1129 IKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI------N--GPNNA 1196 (1630)
T ss_pred Hhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH------h--CCCHH
Confidence 775 677888899999999999999999999887664 33333445899999999988644443 1 23445
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 385 (498)
.+..+...|...|++++|..+|... ..|..+..+|.+.|++++|++.+++. .+..+|..+-.+|...|+
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhH
Confidence 6667999999999999999999985 58999999999999999999999987 446899999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhC--CCchHHHHHHHH
Q 041942 386 VEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR--GEWNRVEKVRKL 458 (498)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 458 (498)
+..|......+. ..|+ +..|.+.|.+++|.++++.++.++|.+...|..|+.+|.+- ++.-+++++|..
T Consensus 1266 f~LA~~cgl~Ii----v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1266 FRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHHHhhh----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999998775432 2344 55678999999999999999999999999999998888876 355566666553
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-16 Score=153.09 Aligned_cols=369 Identities=10% Similarity=0.014 Sum_probs=256.6
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHH
Q 041942 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSL 146 (498)
Q Consensus 67 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 146 (498)
+-+...|..++. +.+.|++++|..+|+++.+. .+-+...|..++..+.+.|+++.|..+|+++++.. |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 346778988888 47789999999999999875 34567788889998889999999999999998864 577778777
Q ss_pred HHHH-HhcCChhHHHH----hhccCC-----C-CCcchHHHHHHHHHh---------cCChHHHHHHHhcCC-CCCc---
Q 041942 147 IYFH-ANCGDLNTASV----LFDGDA-----K-MDVVAWSSLTAGYAR---------RGELSMARSLFDEMP-VRDL--- 202 (498)
Q Consensus 147 ~~~~-~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~-~~~~--- 202 (498)
+... ...|+.++|.+ +|+... . .+...|...+....+ .|+++.|..+|++.. .|..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7533 34577776655 554321 1 244556666655443 566777777777666 2221
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH------HhCC---CCCC------
Q 041942 203 VSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM------RSVG---ERPD------ 267 (498)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m------~~~g---~~p~------ 267 (498)
..|..........+. ..+..++. ...+++..|..++..+ .+.. ++|+
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 122211111000110 11111111 1234566677666652 2221 2443
Q ss_pred --HHHHHHHHHHHhc----cCCc----hHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh-------cCCHH-------HH
Q 041942 268 --DVTMLSLLTACAD----LGDL----EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK-------CGSIE-------RA 323 (498)
Q Consensus 268 --~~~~~~li~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A 323 (498)
...|...+..... .++. +.+..+|++.+...+ .+...|..++..+.+ .|+++ +|
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p--~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 2344444433222 1232 367778877776653 456677777777775 68876 89
Q ss_pred HHHHhcCCC---C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 324 IEVFLGMRD---R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE--ITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 324 ~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
..+|++..+ | +...|..++..+.+.|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|.++|++..
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999987763 3 578899999999999999999999999999 56653 478888888889999999999999998
Q ss_pred HhcCCCCC-hhH--------HHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 398 DEYNIEPN-IRH--------YGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 398 ~~~~~~p~-~~~--------y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+ ..|. ... |...|+.++|..+|+++++..|+++.+|..++..+.+.|+.++|..+|++....+.
T Consensus 384 ~---~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 384 E---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp T---CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred h---ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 7 2333 111 22689999999999999999999999999999999999999999999999998753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-16 Score=142.78 Aligned_cols=216 Identities=9% Similarity=0.011 Sum_probs=102.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (498)
+..+|...|+++.|+..++.. -+|+..++..+...+...++.++|.+.+++++.....+.+...+..+...+...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 344444444444444433221 1333344444444444444444444444333222111122333334444555555
Q ss_pred CHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhhcCCHHHHHHHHHH
Q 041942 319 SIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF---VGVLVACSHAGKVEEGKKYFKL 395 (498)
Q Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~ 395 (498)
++++|.+.+++ ..+...+..++..|.+.|++++|.+.++++.+. .|+.... ..++..+...|++++|..+|++
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 55555555555 334455555555555555566666555555552 2432111 1112222333555566666655
Q ss_pred hHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchH-HHHHHHHhhhC
Q 041942 396 MRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR-VEKVRKLMDDS 462 (498)
Q Consensus 396 ~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~ 462 (498)
+.+..+-.|. ...|...|++++|+..++++++.+|+++.++..++.++...|+.++ +.++++++.+.
T Consensus 192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 5552111111 1223355566666666666666666666666666666666666654 45566666543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-17 Score=153.13 Aligned_cols=274 Identities=12% Similarity=-0.011 Sum_probs=197.7
Q ss_pred CChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHH
Q 041942 53 GAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHG 129 (498)
Q Consensus 53 ~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 129 (498)
+....+...+.... ..+...|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|...|+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 123 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQ 123 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455555555444 3356679999999999999999999999998864 4578889999999999999999999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC---C----------cchHHHHHHHHHhcCChHHHHHHHhc
Q 041942 130 KIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM---D----------VVAWSSLTAGYARRGELSMARSLFDE 196 (498)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~----------~~~~~~l~~~~~~~~~~~~A~~~~~~ 196 (498)
++.+.. +.+..++..+..+|...|++++|...|++.... + ...+..+...+.+.|++++|+..|++
T Consensus 124 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 124 RCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999875 456889999999999999999999999875531 1 12233457788888899999998888
Q ss_pred CC--CC---CcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 041942 197 MP--VR---DLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD 268 (498)
Q Consensus 197 ~~--~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 268 (498)
+. .| +..++..+...+...|++++|.+.|+++.+ .+..+|..+..+|...|++++|...|++..+.. +.+.
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 281 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFI 281 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCch
Confidence 87 33 567788888888888888888888887653 456788888888888888888888888887653 3357
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc----------chhhHHHHHHHHHhcCCHHHHHHHHhc
Q 041942 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA----------KVLHGNALIDMYAKCGSIERAIEVFLG 329 (498)
Q Consensus 269 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (498)
.++..+..++...|++++|...|++.+...+... +...|..+..++...|+.+.+..+..+
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7788888888888888888888866665442211 245556666666666666666666554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-17 Score=151.96 Aligned_cols=275 Identities=14% Similarity=0.026 Sum_probs=155.4
Q ss_pred CCChHHHHH-hcccCC-----CC--ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhh
Q 041942 52 PGAINYAHK-MFVKIT-----EP--DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNM 123 (498)
Q Consensus 52 ~~~~~~A~~-~~~~~~-----~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 123 (498)
.|++++|.+ .|+... .| +...+..+...+.+.|++++|+..|+++.+.. +.+...|..+..++...|+++.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 567777777 666543 12 35568888888888999999999999988764 4467788888888888899999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHH---------------HHHHHHhcC
Q 041942 124 GFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSS---------------LTAGYARRG 185 (498)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~---------------l~~~~~~~~ 185 (498)
|...++++.+.. +.+..++..+..+|...|++++|...|++... .+...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 999999888875 44677888888888888888888888875433 12212111 112222445
Q ss_pred ChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 041942 186 ELSMARSLFDEMP--VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG 263 (498)
Q Consensus 186 ~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 263 (498)
++++|...|+++. .|+. ++..++..+...|...|++++|...++++.+..
T Consensus 196 ~~~~A~~~~~~a~~~~p~~----------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 247 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTS----------------------------IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTS----------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhCcCc----------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5555555554443 1110 023344444455555555555555555444332
Q ss_pred CCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CC------
Q 041942 264 ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RD------ 334 (498)
Q Consensus 264 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~------ 334 (498)
+.+..++..+...+...|++++|...+++.+... +.+...+..+..+|.+.|++++|...|+++.+ .+
T Consensus 248 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 248 -PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 2234444445555555555555555553333322 12333444455555555555555555544331 11
Q ss_pred -----hhHHHHHHHHHHhCCCHHHHHHHHH
Q 041942 335 -----VSTWSTLIGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 335 -----~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (498)
..+|..+..+|...|++++|..+++
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 4556666666666666666666554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.9e-15 Score=142.79 Aligned_cols=331 Identities=11% Similarity=0.010 Sum_probs=272.8
Q ss_pred CCChHHHHHhcccCC-CCChhhHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhc----ccchh
Q 041942 52 PGAINYAHKMFVKIT-EPDTFMYNTIIRGSAQ----SQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTR----LLYRN 122 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~ 122 (498)
.+++++|...|+... ..+...+..|...|.. .+++++|++.|++..+.| +...+..|-..+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 589999999998876 5677888889999988 899999999999998865 56667777777776 78999
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHHHHh----cCChhHHHHhhccCCC-CCcchHHHHHHHHHh----cCChHHHHHH
Q 041942 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHAN----CGDLNTASVLFDGDAK-MDVVAWSSLTAGYAR----RGELSMARSL 193 (498)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~ 193 (498)
+|...|++..+.| +...+..|...|.. .++.++|.+.|++..+ .+...+..+...|.. .+++++|..+
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 9999999999876 56778888888887 7899999999986543 466778888888887 8999999999
Q ss_pred HhcCC-CCCcchHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHhCC
Q 041942 194 FDEMP-VRDLVSWNVMITGYAK----QGEMEKANELFNEVPK-RDVVSWNAMISGYVL----CGMNKQALEMFEEMRSVG 263 (498)
Q Consensus 194 ~~~~~-~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 263 (498)
|++.. ..+...+..+...|.. .++.++|.++|++..+ .+...+..+...|.. .+++++|...|++..+.|
T Consensus 210 ~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~ 289 (490)
T 2xm6_A 210 YRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG 289 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99887 5566778888888886 8899999999998765 466778888888888 899999999999998775
Q ss_pred CCCCHHHHHHHHHHHhcc-----CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC---CHHHHHHHHhcCCC-CC
Q 041942 264 ERPDDVTMLSLLTACADL-----GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG---SIERAIEVFLGMRD-RD 334 (498)
Q Consensus 264 ~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~ 334 (498)
+...+..+...+... +++++|...|++.... + +...+..+...|...| +.++|...|++..+ .+
T Consensus 290 ---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~ 362 (490)
T 2xm6_A 290 ---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGE 362 (490)
T ss_dssp ---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTC
T ss_pred ---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCC
Confidence 445666677777766 8999999999655543 3 3445567777887766 78999999987764 57
Q ss_pred hhHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHhHH
Q 041942 335 VSTWSTLIGGLAF----HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH----AGKVEEGKKYFKLMRD 398 (498)
Q Consensus 335 ~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 398 (498)
+..+..+...|.. .+++++|..+|++..+.| +...+..|...|.+ .++.++|...+++..+
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 8889999999998 899999999999999865 46677777777777 7888888888888877
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.4e-16 Score=140.22 Aligned_cols=182 Identities=10% Similarity=0.051 Sum_probs=75.2
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCchHH
Q 041942 209 ITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP-DDVTMLSLLTACADLGDLEVG 287 (498)
Q Consensus 209 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a 287 (498)
..+|...|+++.|...++....++..++..+...+...++.++|+..++++...+..| +...+..+...+...|++++|
T Consensus 41 ~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~A 120 (291)
T 3mkr_A 41 YRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120 (291)
T ss_dssp HHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3444444444444444433322333344444444444444444444444444433222 222333333444444444444
Q ss_pred HHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHH---HHHHHHHHhCCCHHHHHHHHHHHH
Q 041942 288 KKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RDVSTW---STLIGGLAFHGFAEESIAMFREMQ 362 (498)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~l~~~~~~~~~~~~A~~~~~~m~ 362 (498)
...+++ +.+...+..++..|.+.|++++|...|+++.+ |+.... ...+..+...|++++|..+|+++.
T Consensus 121 l~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l 193 (291)
T 3mkr_A 121 LRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193 (291)
T ss_dssp HHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 444421 22333444444444444444444444444431 221100 111122223344555555555544
Q ss_pred HCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 363 RLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 363 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+. .+.+...++.+..++.+.|++++|...++++.+
T Consensus 194 ~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 194 DK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 122344444444444555555555555555444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=145.99 Aligned_cols=254 Identities=11% Similarity=0.026 Sum_probs=141.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHH
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGY 243 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 243 (498)
+...+..+...+...|++++|..+|+++. +.+...+..+..++...|++++|...|+++.+ .+..++..+...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 34455666667777777777777777665 33445666666666677777777666666542 3455666666666
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHhccCCchHHHHHHHHHHHhhcCCcchhhHH
Q 041942 244 VLCGMNKQALEMFEEMRSVGERPDDVTMLSL--------------LT-ACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (498)
...|++++|...++++.+... .+...+..+ .. .+...|++++|...+++.+...+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------- 169 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP--------- 169 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST---------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC---------
Confidence 666777777766666665421 111222221 11 14444445555555533332221
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHH
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE 388 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 388 (498)
.+...+..+...|...|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 170 ------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 170 ------------------------NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred ------------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 133444444445555555555555555544421 1123444444455555555555
Q ss_pred HHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCC------------CCchHHHHHHHHHhCCC
Q 041942 389 GKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKD------------ESGDYVLLSNIYASRGE 448 (498)
Q Consensus 389 a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~ 448 (498)
|...++++.+ ..|+ ...|...|++++|...++++++..|. ++.+|..++.++...|+
T Consensus 225 A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 225 ALDAYNRALD---INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH---cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 5555555444 1222 22233555555555555555555666 57789999999999999
Q ss_pred chHHHHHHHHhhh
Q 041942 449 WNRVEKVRKLMDD 461 (498)
Q Consensus 449 ~~~A~~~~~~m~~ 461 (498)
+++|..++++..+
T Consensus 302 ~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 302 PDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999886643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.3e-16 Score=141.52 Aligned_cols=260 Identities=10% Similarity=-0.009 Sum_probs=170.3
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHH
Q 041942 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIY 148 (498)
Q Consensus 69 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 148 (498)
+...|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34556777778888888888888888887753 3466777788888888888888888888888764 446777888888
Q ss_pred HHHhcCChhHHHHhhccCCC---CCcchHHHH--------------HH-HHHhcCChHHHHHHHhcCC---CCCcchHHH
Q 041942 149 FHANCGDLNTASVLFDGDAK---MDVVAWSSL--------------TA-GYARRGELSMARSLFDEMP---VRDLVSWNV 207 (498)
Q Consensus 149 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 207 (498)
.+...|++++|.+.+++... .+...+..+ .. .+...|++++|...++++. +.+...+..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 88888888888888875432 222223222 22 2566677777777777665 334566666
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc
Q 041942 208 MITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284 (498)
Q Consensus 208 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 284 (498)
+...+...|++++|.+.++++.+ .+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 77777777777777777766542 345566667777777777777777777766543 33455666666667777777
Q ss_pred hHHHHHHHHHHHhhcCCc----------chhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 041942 285 EVGKKVHCTLLDMTSGVA----------KVLHGNALIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
++|...+++.+...+... +...+..+..++.+.|+.++|..++++..
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777777755544332200 34455555666666666666666665443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-14 Score=137.21 Aligned_cols=375 Identities=10% Similarity=-0.070 Sum_probs=225.0
Q ss_pred CcChHHHHHHHHhhhhccCCChHHHHHhcccCC------------CCChhhHHHHHHHHhccCChHHHHHHHHHHHhC--
Q 041942 34 NSDSSALRELIYSGSVVIPGAINYAHKMFVKIT------------EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC-- 99 (498)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-- 99 (498)
......|+.+-. ++.. .|++++|++.|++.. .....+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~-~~~~-~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 48 EFKATMCNLLAY-LKHL-KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp --CCHHHHHHHH-HHHH-TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH-HHHH-CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 334556777666 7888 999999999987652 224568999999999999999999999987542
Q ss_pred ---C-CCC-CHhhHHHHHHHhhc--ccchhhHHHHHHHHHHhCCCCChHHHHHHHHH---HHhcCChhHHHHhhccCC--
Q 041942 100 ---S-IKP-NKFTFSFVLKACTR--LLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYF---HANCGDLNTASVLFDGDA-- 167 (498)
Q Consensus 100 ---~-~~p-~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~-- 167 (498)
+ ..+ ...++..+..++.. .+++++|...|++..+.. +-+...+..+..+ +...++.++|.+.+++..
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 111 34556555544443 457999999999999875 3345555555555 345677788888887543
Q ss_pred -CCCcchHHHHHHHHHh----cCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhH
Q 041942 168 -KMDVVAWSSLTAGYAR----RGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSW 236 (498)
Q Consensus 168 -~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~ 236 (498)
+.+...+..+...+.. .+++++|.+.+++.. +.+..++..+...|...|++++|...|++..+ .+..++
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence 3445556555555444 467889999998876 55667889999999999999999999998764 345667
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (498)
..+...|...+.... ... ... ........+..+.|...++......+ .+...+..+...|..
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-ENG------MYGKRKLLELIGHAVAHLKKADEAND--NLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCT--TTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh---------hHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcCC--chhhhhhhHHHHHHH
Confidence 777666643211111 000 000 00001112235677777755554443 345566778889999
Q ss_pred cCCHHHHHHHHhcCCC--CChh----HHHHHHH-HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 041942 317 CGSIERAIEVFLGMRD--RDVS----TWSTLIG-GLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEG 389 (498)
Q Consensus 317 ~~~~~~A~~~~~~~~~--~~~~----~~~~l~~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 389 (498)
.|++++|...|++..+ ++.. .+..+.. .+...|++++|+..|++..+ +.|+....... ...+
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~l 415 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDKL 415 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHHH
Confidence 9999999999987642 3221 2333332 34567899999999999998 66765433222 2344
Q ss_pred HHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 390 KKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 390 ~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
.++++......+-.+. ...|...|++++|...|+++++++|.+|.++.-++
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 5556665553222333 34455889999999999999999999887776554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-17 Score=163.09 Aligned_cols=151 Identities=14% Similarity=0.158 Sum_probs=127.9
Q ss_pred CCcChHHHHHHHHhhhhccCCChHHHHHhcccCC-------CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH
Q 041942 33 FNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT-------EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNK 105 (498)
Q Consensus 33 ~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 105 (498)
...-..+|+.+|. .|++ .|++++|.++|+.|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 123 ~~~~~~TynaLId-glcK-~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 123 LSGQQQRLLAFFK-CCLL-TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp CCHHHHHHHHHHH-HHHH-HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHhHHHHHHHHHH-HHHh-CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 3444568999999 9999 999999999997652 799999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcccch-hhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCC-----CcchHHHHHH
Q 041942 106 FTFSFVLKACTRLLYR-NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKM-----DVVAWSSLTA 179 (498)
Q Consensus 106 ~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~ 179 (498)
.||+++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.++...+..+ ...+...|..
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 9999999999999985 789999999999999999999999999888887777776665544431 2334445555
Q ss_pred HHHhcC
Q 041942 180 GYARRG 185 (498)
Q Consensus 180 ~~~~~~ 185 (498)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-14 Score=128.66 Aligned_cols=219 Identities=11% Similarity=0.012 Sum_probs=148.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCC-cc----hhhHH
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV-AK----VLHGN 308 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~ 308 (498)
..+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...+++.+...+.. ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345566666777777777777777766655 556666666777777777777777775554433211 11 35566
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCC
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGK 385 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 385 (498)
.+...+...|++++|...|++..+ |+ ...+...|++++|...++++.. ..|+ ...+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcC
Confidence 667777777777777777766553 33 2345555677777777777777 3343 5566666777777777
Q ss_pred HHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 386 VEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
+++|...++++.+..+..+. ...|...|++++|...++++++.+|+++.+|..++.+|...|++++|...+++..
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777777777662211111 3334477788888888888888889889999999999999999999999999987
Q ss_pred hCC
Q 041942 461 DSD 463 (498)
Q Consensus 461 ~~~ 463 (498)
+..
T Consensus 235 ~~~ 237 (258)
T 3uq3_A 235 TKD 237 (258)
T ss_dssp HHH
T ss_pred HhC
Confidence 654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=150.54 Aligned_cols=144 Identities=12% Similarity=0.109 Sum_probs=105.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCC-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMR-------DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVG 375 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 375 (498)
-..+|++||++|++.|++++|.++|.+|. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35577888888888888888888886543 47888888888888888888888888888888888888888888
Q ss_pred HHHHHhhcCC-HHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCC---------CchHHHHHHHHHh
Q 041942 376 VLVACSHAGK-VEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDE---------SGDYVLLSNIYAS 445 (498)
Q Consensus 376 l~~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~l~~~~~~ 445 (498)
+|.++++.|+ .++|.++|++|.+ .|+.||..+|...=+-++-..+++.+.+..|+- ..+...|-+.|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 8888888887 4678888888888 788888888874444444445666555554431 2233445555665
Q ss_pred CC
Q 041942 446 RG 447 (498)
Q Consensus 446 ~g 447 (498)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 44
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.6e-14 Score=120.82 Aligned_cols=202 Identities=14% Similarity=0.109 Sum_probs=97.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.+...+ .+...+..+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP--RYLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHH
Confidence 3444455555555555555555555555442 22344455555555555555555555544433321 12233333444
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHH
Q 041942 313 MYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKK 391 (498)
Q Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 391 (498)
.+...+. . ... .+...|++++|+..+++.++ +.|+ ...+..+...+...|++++|+.
T Consensus 82 ~~~~~~~---------~--~~~---------~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 82 AYVALYR---------Q--AED---------RERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHH---------T--CSS---------HHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhhh---------h--hhh---------hcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHH
Confidence 4333300 0 000 00111555666666666555 3343 4455555555666666666666
Q ss_pred HHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 392 YFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 392 ~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
.+++..+ ..-.|. ...|...|++++|...|+++++++|+++.++..++.++...|++++|++.+++..
T Consensus 140 ~~~~al~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 140 SLKQALA-LEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHH-HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHh-cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 6666555 221111 2233366666666667777777889999999999999999999999999998764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-13 Score=122.16 Aligned_cols=241 Identities=12% Similarity=0.025 Sum_probs=170.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 041942 203 VSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD--DVTMLSLLTA 277 (498)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~ 277 (498)
..+......+...|++++|...|+++.+ .+...+..+...|...|++++|...+++..+.+..|+ ...|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455566777788888888888877653 3455788888888888999999999988887432222 3347788888
Q ss_pred HhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHH
Q 041942 278 CADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEES 354 (498)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 354 (498)
+...|++++|...+++.+...+ .+...+..+...|...|++++|...|++..+ .+...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT--TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999966666543 3456778889999999999999999988775 3566777777344445699999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCC---HHHHHHHHHHhHHhcCCCCC-------------hhHHHhhCChHH
Q 041942 355 IAMFREMQRLKVRPT-EITFVGVLVACSHAGK---VEEGKKYFKLMRDEYNIEPN-------------IRHYGVHGDVEL 417 (498)
Q Consensus 355 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~-------------~~~y~~~g~~~~ 417 (498)
.+.++++.+ ..|+ ...+..+...+...|+ +++|...++++.+...-.|+ ...|...|++++
T Consensus 162 ~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999988 4454 6677777788888887 77788888887763222233 122336677777
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhCC
Q 041942 418 GRLANKRLLNMRKDESGDYVLLSNIYASRG 447 (498)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (498)
|...++++++++|+++.++..+.......+
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 777777777777777777666665554443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-13 Score=131.63 Aligned_cols=370 Identities=11% Similarity=0.009 Sum_probs=205.5
Q ss_pred hHHHHHHhhchhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCCh---HHHHHhcccCCCCChhhHHHHHHHHhccC
Q 041942 8 SSRLWKKCTNLRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAI---NYAHKMFVKITEPDTFMYNTIIRGSAQSQ 84 (498)
Q Consensus 8 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~ll~~~~~~g 84 (498)
+..+...-|+.+.|.+.+....+.|.. ..+..+-. +|.. .|+. ++|.+.|+.....++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~---~A~~~Lg~-~y~~-~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYS---EAQVGLAD-IQVG-TRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC---TGGGTCC------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCH---HHHHHHHH-HHHc-cCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 444555667888898888888887632 22333333 4555 6666 89999998887557777877777555554
Q ss_pred -----ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchh---hHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCh
Q 041942 85 -----NPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRN---MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDL 156 (498)
Q Consensus 85 -----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 156 (498)
++++|+..|++..+.|. | ..+..|...|...+..+ .+.+.+......| +...+..|...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 77889999999888663 2 25666666666554433 3455555555544 355666777777777744
Q ss_pred h----HHHHhhccCCCCCcchHHHHHHHHHhcC---ChHHHHHHHhcCC---CCCcchHHHHHHHHHhc----CChHHHH
Q 041942 157 N----TASVLFDGDAKMDVVAWSSLTAGYARRG---ELSMARSLFDEMP---VRDLVSWNVMITGYAKQ----GEMEKAN 222 (498)
Q Consensus 157 ~----~A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~----~~~~~A~ 222 (498)
+ .+..+++.....++..+..+...|...| +.++|+..|++.. +++...+..+...|... ++.++|.
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 4 4444555555556667777777777777 7778888777665 33333335566666444 5777777
Q ss_pred HHHhhCCCCChhhHHHHHHH-H--HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----CchHHHHHHHHH
Q 041942 223 ELFNEVPKRDVVSWNAMISG-Y--VLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG-----DLEVGKKVHCTL 294 (498)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~~ 294 (498)
+.|++....+...+..+... | ...+++++|...|++..+.| +...+..+...|. .| ++++|...|++.
T Consensus 238 ~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 238 ALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 77777663345566666655 3 45677777777777777665 4445555555554 34 677777777333
Q ss_pred HHhhcCCcchhhHHHHHHHHHh----cCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 041942 295 LDMTSGVAKVLHGNALIDMYAK----CGSIERAIEVFLGMRDR-DVSTWSTLIGGLAF----HGFAEESIAMFREMQRLK 365 (498)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~ 365 (498)
. .-++..+..|...|.. ..+.++|...|++..++ +......|...|.. .++..+|..+|+...+.|
T Consensus 314 a-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 314 V-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp T-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred h-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 3 2233444455555554 23677777777665443 45556666666553 346677777777776655
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 366 VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 366 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
. ++.......+......++..+|..+.++.++
T Consensus 389 ~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 389 T-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp C-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2 2222222222222333455555555555444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.6e-14 Score=135.45 Aligned_cols=364 Identities=9% Similarity=-0.021 Sum_probs=156.0
Q ss_pred CCChHHHHHhcccCC-CCChhhHHHHHHHHhccCCh---HHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcc-----cchh
Q 041942 52 PGAINYAHKMFVKIT-EPDTFMYNTIIRGSAQSQNP---LDAVFLYTQMEKCSIKPNKFTFSFVLKACTRL-----LYRN 122 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----~~~~ 122 (498)
.|++++|.++|+... ..+..++..|...+...|+. ++|++.|++..+. +...+..|...+... ++.+
T Consensus 16 ~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHH
Confidence 566666666666554 23344445555555555555 6666666666532 333444444423222 2556
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC-CCC
Q 041942 123 MGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP-VRD 201 (498)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~ 201 (498)
+|...|++..+.|.. ..+..|...|...+..+.+.+ +.+.+.... ..+
T Consensus 92 ~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~----------------------------a~~~~~~a~~~g~ 140 (452)
T 3e4b_A 92 EAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVN----------------------------AQQQISQWQAAGY 140 (452)
T ss_dssp HHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCC----------------------------HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHH----------------------------HHHHHHHHHHCCC
Confidence 666666666665422 244445555554443332211 111111111 112
Q ss_pred cchHHHHHHHHHhcC----ChHHHHHHHhhCCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041942 202 LVSWNVMITGYAKQG----EMEKANELFNEVPKRDVVSWNAMISGYVLCG---MNKQALEMFEEMRSVGERPDDVTMLSL 274 (498)
Q Consensus 202 ~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~l 274 (498)
+..+..+...|...+ ..+.+..+++.....++..+..+...|...| +.++|+..|++..+.| .++...+..+
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV 219 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 333334444444444 2333334444444444445555555555555 5555666665555555 3333333344
Q ss_pred HHHHhcc----CCchHHHHHHHHHHHhhcCCcchhhHHHHHHH-H--HhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHH
Q 041942 275 LTACADL----GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM-Y--AKCGSIERAIEVFLGMRD-RDVSTWSTLIGGLA 346 (498)
Q Consensus 275 i~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~ 346 (498)
...|... +++++|...|+... . -++..+..|... | ...+++++|...|++..+ .+...+..|...|.
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa--~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA--P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG--G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc--C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444333 45555655553332 1 222333334433 2 235556666665555443 24445555555554
Q ss_pred hCC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHhHHhcCCCCC----hhHHH---
Q 041942 347 FHG-----FAEESIAMFREMQRLKVRPTEITFVGVLVACSH----AGKVEEGKKYFKLMRDEYNIEPN----IRHYG--- 410 (498)
Q Consensus 347 ~~~-----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~----~~~y~--- 410 (498)
.| ++++|+++|++.. . -+...+..|...|.. ..++++|..++++..+ .|...- ...|.
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-NGQNSADFAIAQLFSQGK 368 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-TTCTTHHHHHHHHHHSCT
T ss_pred -cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-hChHHHHHHHHHHHHhCC
Confidence 33 5566666655554 2 233444444444433 2255666666655554 332111 11111
Q ss_pred -hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 411 -VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 411 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
...++++|...|+++.+..+++.......+......++..+|..+.++..+.
T Consensus 369 g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 2346666666666666544433222222222222334566777777776554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.4e-14 Score=124.32 Aligned_cols=218 Identities=8% Similarity=-0.080 Sum_probs=145.1
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCC--CC----hHHHH
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE--FN----RFVRN 144 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 144 (498)
..|..+...+...|++++|+..|++..+.. .+...|..+..++...|++++|...++++.+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 457777788888888888888888887765 67778888888888888888888888888775321 11 46777
Q ss_pred HHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHH
Q 041942 145 SLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKA 221 (498)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 221 (498)
.+...+...|++++|...|++....+.. ...+.+.|++++|...++++. +.+...+..+...+...|++++|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 7777777888888887777665432211 234555566777777776654 22344566666666666676666
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 041942 222 NELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296 (498)
Q Consensus 222 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 296 (498)
...|+++.+ .+..+|..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|...++..+.
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666666542 345566666666666677777776666666543 33455666666666666666666666644443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-12 Score=115.41 Aligned_cols=219 Identities=10% Similarity=0.003 Sum_probs=131.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCchHHHHHHHHHHHhhcCCcchhhHH
Q 041942 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD----LGDLEVGKKVHCTLLDMTSGVAKVLHGN 308 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (498)
..++..+...|...|++++|...|++..+.+ +...+..+...+.. .+++++|...|++..... +...+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHH
Confidence 3444555555555555555555555555422 23444445555555 555666665554333321 334444
Q ss_pred HHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041942 309 ALIDMYAK----CGSIERAIEVFLGMRD-RDVSTWSTLIGGLAF----HGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379 (498)
Q Consensus 309 ~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 379 (498)
.+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+.+|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 55555555 5666666666554432 245556666666666 666666666666666643 34455555555
Q ss_pred Hhh----cCCHHHHHHHHHHhHHhcCCCCC-----hhHHHh----hCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh-
Q 041942 380 CSH----AGKVEEGKKYFKLMRDEYNIEPN-----IRHYGV----HGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS- 445 (498)
Q Consensus 380 ~~~----~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 445 (498)
+.. .+++++|...+++..+ .+ .|. ...|.. .+++++|...++++++.+| +.++..++.+|.+
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~-~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACD-LK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHH-TT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHH-CC-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 555 6666666666666665 22 111 222334 6777777777777776654 6788899999999
Q ss_pred ---CCCchHHHHHHHHhhhCCCc
Q 041942 446 ---RGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 446 ---~g~~~~A~~~~~~m~~~~~~ 465 (498)
.+++++|++.|++..+.|..
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH
Confidence 89999999999999887753
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-12 Score=114.24 Aligned_cols=198 Identities=10% Similarity=0.013 Sum_probs=118.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.+.... .+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS--RNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHH
Confidence 4456666777777777777777777776543 33556666666667777777777777754444322 23444555555
Q ss_pred HHHhcCCHHHHHHHHhcCCC----C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHH
Q 041942 313 MYAKCGSIERAIEVFLGMRD----R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387 (498)
Q Consensus 313 ~~~~~~~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 387 (498)
.|...|++++|..+++++.+ | +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666655443 1 23445555555666666666666666655522 112444555555555555555
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 388 EGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 388 ~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
+|...+++ +++..|++...+..++.++...|++++|.+.++++.+..
T Consensus 193 ~A~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDL-----------------------------FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHH-----------------------------HHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-----------------------------HHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 55555544 444566666677777777777777777777777776643
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-12 Score=116.59 Aligned_cols=240 Identities=10% Similarity=0.025 Sum_probs=139.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 041942 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHA 151 (498)
Q Consensus 72 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (498)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|+++.|...++++.+.. ++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~--------- 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKA--------- 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTC---------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhH---------
Confidence 34445556666777777777777766542 2234456666666666666666666666666522 11111
Q ss_pred hcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhC
Q 041942 152 NCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEV 228 (498)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 228 (498)
....|..+...+...|++++|+..|++.. +.+...+..+..++...|++++|...|++.
T Consensus 73 ------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 73 ------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred ------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 01124444455555555555555555544 334456666677777777777777777766
Q ss_pred CC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---chHHHHHHHHHHHhhcCCc
Q 041942 229 PK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD---LEVGKKVHCTLLDMTSGVA 302 (498)
Q Consensus 229 ~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~ 302 (498)
.+ .+...|..+...+...+++++|...|++..+.. +.+...+..+..++...|+ ++.|...+++.+......|
T Consensus 135 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 213 (272)
T 3u4t_A 135 IRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG 213 (272)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGG
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccc
Confidence 54 244566666623334458888888888887653 3345666666777776676 7778887766655443333
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 369 (498)
+.. -..+ ..+|..+...|...|++++|.+.++++.+ +.|+
T Consensus 214 ~~~-~~~~------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~ 253 (272)
T 3u4t_A 214 AKY-KDEL------------------------IEANEYIAYYYTINRDKVKADAAWKNILA--LDPT 253 (272)
T ss_dssp GGG-HHHH------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred ccc-hHHH------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcc
Confidence 321 0001 12344556666667777777777777766 3454
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=122.56 Aligned_cols=212 Identities=8% Similarity=-0.096 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (498)
.++..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++.+...+ .+...+..+...
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~ 120 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--TYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc--cccHHHHHHHHH
Confidence 344455555555555555555555555432 22344555555555555555555555544433321 223444455555
Q ss_pred HHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 041942 314 YAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKK 391 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 391 (498)
|...|++++|...|+++.+ |+.......+..+...|++++|...+++..... +++... ..++..+...++.++|..
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWG-WNIVEFYLGNISEQTLME 198 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTH-HHHHHHHTTSSCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHH-HHHHHHHHHhcCHHHHHH
Confidence 5555555555555554432 222222223333344466666666665555421 222222 224445555555566666
Q ss_pred HHHHhHHhcCCCCC------------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHH
Q 041942 392 YFKLMRDEYNIEPN------------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456 (498)
Q Consensus 392 ~~~~~~~~~~~~p~------------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (498)
.+++... ..|. ...|...|++++|...|+++++.+|++... .+.++...|++++|++.+
T Consensus 199 ~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 199 RLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 6555533 2221 223336666777777777777677666433 355667777777777665
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-12 Score=113.02 Aligned_cols=195 Identities=9% Similarity=-0.075 Sum_probs=165.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041942 202 LVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC 278 (498)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 278 (498)
...+..+...+...|++++|.+.|+++.+ .+...+..+...|...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56788889999999999999999998763 467789999999999999999999999998764 44678888999999
Q ss_pred hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHH
Q 041942 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESI 355 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 355 (498)
...|++++|..++++.......+.+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999966665112233567778889999999999999999988753 46788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 356 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
..++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999998843 34567788888888999999999999998877
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.9e-13 Score=118.09 Aligned_cols=196 Identities=11% Similarity=0.076 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (498)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.+.... .+...+..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS--SAATAYYGAGNV 100 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--cchHHHHHHHHH
Confidence 345555566666666666666666666542 23455555566666666666666666644443321 233444455555
Q ss_pred HHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 041942 314 YAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGK 390 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 390 (498)
+...|++++|...++++. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555443 1244455555556666666666666666655521 123444555555555555555555
Q ss_pred HHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 391 KYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
..++++.+ ..|+++.++..++.+|...|++++|...++++.+.
T Consensus 180 ~~~~~~~~-----------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTE-----------------------------QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHH-----------------------------HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------------------------hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 55555444 44555555555566666666666666666555543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.2e-13 Score=114.25 Aligned_cols=193 Identities=18% Similarity=0.028 Sum_probs=128.0
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041942 200 RDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLT 276 (498)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 276 (498)
++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4555666677777777777777777776553 355677777777777888888888887777653 335566777777
Q ss_pred HHhcc-----------CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHH
Q 041942 277 ACADL-----------GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RDVSTWSTLIG 343 (498)
Q Consensus 277 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~ 343 (498)
++... |++++|...+++.+...+ .+...+..+...+...|++++|...|++..+ .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--RYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 77777 888888888866655442 3455666777778888888888887776432 56677888888
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 344 GLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 344 ~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
+|...|++++|+..|+++.+ ..| +...+..+...+.+.|++++|...+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888887 345 46777778888888888888888887654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-12 Score=116.77 Aligned_cols=217 Identities=12% Similarity=-0.001 Sum_probs=176.3
Q ss_pred HhCCChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCH
Q 041942 244 VLCGMNKQALEMFEEMRSVGER---PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSI 320 (498)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (498)
...|++++|+..++++.+.... .+..++..+...+...|++++|...|++.+...+ .+...+..+...|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHccCH
Confidence 3457899999999999976421 1456788889999999999999999977766543 4567788899999999999
Q ss_pred HHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 321 ERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 321 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
++|...|+++.+ .+..++..+..+|...|++++|...++++.+ ..|+.......+..+...|++++|...+++..
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998763 3678999999999999999999999999998 45765555555666678899999999998887
Q ss_pred HhcCCCCC----hhHHHhhCChHHHHHHHHHHHccCCC----CCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 398 DEYNIEPN----IRHYGVHGDVELGRLANKRLLNMRKD----ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 398 ~~~~~~p~----~~~y~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
...+-.+. ...+...++.++|...++++++..|. ++.++..++.+|...|++++|...++++.+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 73222222 22333777889999999999987764 368899999999999999999999999987653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=131.92 Aligned_cols=262 Identities=15% Similarity=0.100 Sum_probs=157.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCC--CCC-c----chHHHHHHHHHhcCChHHHHHHHhhCCC---------CChhhH
Q 041942 173 AWSSLTAGYARRGELSMARSLFDEMP--VRD-L----VSWNVMITGYAKQGEMEKANELFNEVPK---------RDVVSW 236 (498)
Q Consensus 173 ~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~ 236 (498)
.+..+...+...|++++|+..|+++. .|+ . ..+..+...+...|++++|.+.|++..+ ....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 34456667788888888888888776 333 2 3567777778888888888887776542 123456
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHhccCC-----------------chHHHHHHHHH
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRSV----GE-RPDDVTMLSLLTACADLGD-----------------LEVGKKVHCTL 294 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~~ 294 (498)
..+...|...|++++|...+++..+. +- .....++..+...+...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 67777777788888888877776533 11 1123355666666677777 66666666444
Q ss_pred HHhh---cC-CcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 295 LDMT---SG-VAKVLHGNALIDMYAKCGSIERAIEVFLGMRD-----RD----VSTWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 295 ~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
+... +. ......+..+...|...|++++|...+++..+ .+ ..++..+...|...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3321 11 11123444555556666666666666655442 11 124555556666666666666666655
Q ss_pred HHCCCC-C----CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCC-----
Q 041942 362 QRLKVR-P----TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKD----- 431 (498)
Q Consensus 362 ~~~~~~-p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~----- 431 (498)
.+.... . ...++..+...+...|++++|...+++... ..+.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----------------------------~~~~~~~~~ 340 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA-----------------------------IAQELGDRI 340 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------HHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------------HHHHCCChH
Confidence 441100 0 023444455555555555555555555444 3221
Q ss_pred -CCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 432 -ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 432 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
...++..++.+|...|++++|...+++..+..
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 23478889999999999999999999886543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.8e-13 Score=116.18 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG 384 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 384 (498)
..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp ---------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhc
Confidence 3344444444444444444443321 234445555555555555555555555555521 123445555555555556
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHh
Q 041942 385 KVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
++++|.+.++++.+..+-.+. ...|...|++++|...++++++..|+++.++..++.++...|++++|+..++++
T Consensus 106 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666655555552111111 223335666666666666777778888899999999999999999999999999
Q ss_pred hhCC
Q 041942 460 DDSD 463 (498)
Q Consensus 460 ~~~~ 463 (498)
.+..
T Consensus 186 ~~~~ 189 (243)
T 2q7f_A 186 TEQD 189 (243)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.3e-12 Score=109.24 Aligned_cols=196 Identities=12% Similarity=0.006 Sum_probs=114.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++.+...+ .+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP--DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChHHHHHHHH
Confidence 4556667777777777777777777776543 33456666666677777777777777755444322 23444455555
Q ss_pred HHHhc-CCHHHHHHHHhcCCC--C---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCC
Q 041942 313 MYAKC-GSIERAIEVFLGMRD--R---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGK 385 (498)
Q Consensus 313 ~~~~~-~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 385 (498)
.+... |++++|...++++.+ . +...+..+..++...|++++|...++++.+. .| +...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCC
Confidence 55555 666666655554433 1 1344555555555555555555555555552 23 24444455555555555
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCC-CCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 386 VEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRK-DESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
+++|...+++ +++..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 163 ~~~A~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKK-----------------------------YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHH-----------------------------HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------------------------HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 5555555554 444556 56666666666677777777777777766543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.5e-13 Score=124.50 Aligned_cols=260 Identities=13% Similarity=0.085 Sum_probs=142.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--CCC-----cchHHHHHHHHHhcCChHHHHHHHhhCCC-----C----ChhhHH
Q 041942 174 WSSLTAGYARRGELSMARSLFDEMP--VRD-----LVSWNVMITGYAKQGEMEKANELFNEVPK-----R----DVVSWN 237 (498)
Q Consensus 174 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~ 237 (498)
+......+...|++++|...|+++. .|+ ...+..+...+...|++++|.+.+++..+ + ...++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 3445566777777777777777765 222 24556666777777777777777665542 1 133556
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCC--------------------chHHHHHHH
Q 041942 238 AMISGYVLCGMNKQALEMFEEMRSVGE-RPD----DVTMLSLLTACADLGD--------------------LEVGKKVHC 292 (498)
Q Consensus 238 ~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~ 292 (498)
.+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666667777777777777666543210 111 2245555556666666 566665554
Q ss_pred HHHHhh---cC-CcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCCHHHHHHHHH
Q 041942 293 TLLDMT---SG-VAKVLHGNALIDMYAKCGSIERAIEVFLGMRD-----RD----VSTWSTLIGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 293 ~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (498)
+.+... +. ......+..+...+...|++++|...+++..+ ++ ..++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333211 10 01122344445555555555555555544431 11 1244445555555555555555555
Q ss_pred HHHHCCC-CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCC---
Q 041942 360 EMQRLKV-RPT----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKD--- 431 (498)
Q Consensus 360 ~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~--- 431 (498)
+..+... .++ ..++..+...+...|++++|...++ ++++..+.
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-----------------------------~a~~~~~~~~~ 298 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL-----------------------------KHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-----------------------------HHHHHHHHHTC
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHH-----------------------------HHHHHHHhcCC
Confidence 5443100 000 2233444444445555555555444 44433222
Q ss_pred ---CCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 432 ---ESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 432 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
...++..++.+|...|++++|...+++..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1347889999999999999999999998764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=130.14 Aligned_cols=281 Identities=14% Similarity=0.061 Sum_probs=134.5
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHhhccCCC--C-C----cchHHHHHHHHHhcCChHHHHHHHhcCC-----C----CC
Q 041942 138 FNRFVRNSLIYFHANCGDLNTASVLFDGDAK--M-D----VVAWSSLTAGYARRGELSMARSLFDEMP-----V----RD 201 (498)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~----~~ 201 (498)
.....+......+...|++++|...|++... | + ...+..+...+...|++++|...+++.. . ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444555666667777777777777665332 1 2 1345556666666666666666665543 0 01
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCC--------------------hHHH
Q 041942 202 LVSWNVMITGYAKQGEMEKANELFNEVPK-----RD----VVSWNAMISGYVLCGM--------------------NKQA 252 (498)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~--------------------~~~a 252 (498)
..++..+...+...|++++|...+++..+ ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 23444445555555555555555554432 11 1244444445555555 4444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcC-CcchhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 041942 253 LEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSG-VAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 253 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
...+.+.... ....+. ......+..+...|...|++++|...+++..
T Consensus 167 ~~~~~~al~~--------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 167 VDFYEENLSL--------------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHHH--------------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444443211 000000 0112233444444445555555554444433
Q ss_pred C-----CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 332 D-----RD----VSTWSTLIGGLAFHGFAEESIAMFREMQRL----KVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 332 ~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
+ ++ ..++..+...|...|++++|...+++..+. +..+. ..++..+...+...|++++|...+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 1 11 124455555555555555555555554431 10000 2344445555555555555555555544
Q ss_pred HhcCCCCC-----------hhHHHhhCChHHHHHHHHHHHccCC------CCCchHHHHHHHHHhCCCch
Q 041942 398 DEYNIEPN-----------IRHYGVHGDVELGRLANKRLLNMRK------DESGDYVLLSNIYASRGEWN 450 (498)
Q Consensus 398 ~~~~~~p~-----------~~~y~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~ 450 (498)
+...-.++ ...|...|++++|...+++++++.+ ....++..++.++...|+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 41111111 2222355566666666665554422 22456777888888877653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-12 Score=121.32 Aligned_cols=219 Identities=8% Similarity=0.033 Sum_probs=111.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-chHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 041942 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD-LEVGKKVHCTLLDMTSGVAKVLHGNALIDMY 314 (498)
Q Consensus 236 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (498)
|..+...+...|++++|+..+++.++.. +-+...|..+..++...|+ +++|...|++.+.... -+...|..+..++
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P--~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHH
Confidence 3334444444444444444444444332 1123334444444444443 4444444433333221 2233334444444
Q ss_pred HhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhh-cCCHHHH
Q 041942 315 AKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSH-AGKVEEG 389 (498)
Q Consensus 315 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~-~g~~~~a 389 (498)
...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++ +.| +...|..+..++.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 444444444444444331 2344555555555555555555555555555 223 24455555555555 3333444
Q ss_pred -----HHHHHHhHHhcCCCCC-h-------hHHHhhC--ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC-------
Q 041942 390 -----KKYFKLMRDEYNIEPN-I-------RHYGVHG--DVELGRLANKRLLNMRKDESGDYVLLSNIYASRG------- 447 (498)
Q Consensus 390 -----~~~~~~~~~~~~~~p~-~-------~~y~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 447 (498)
++.+++.++ +.|+ . ..|...| ++++|...++++ +.+|+++.++..++.+|.+.|
T Consensus 255 ~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 255 VLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 244555444 3333 1 1111333 466666666666 678889999999999999875
Q ss_pred --CchHHHHHHHHh-hhCC
Q 041942 448 --EWNRVEKVRKLM-DDSD 463 (498)
Q Consensus 448 --~~~~A~~~~~~m-~~~~ 463 (498)
..++|+++|+++ .+.+
T Consensus 331 ~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 258999999998 5543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-12 Score=107.84 Aligned_cols=157 Identities=12% Similarity=0.081 Sum_probs=116.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA 379 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 379 (498)
+..+|..+...|.+.|++++|...|++..+ .+..+|..+..+|...|++++|...+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 344556666777777777777777766542 356677777777777777777777777776632 2235556666677
Q ss_pred HhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchH
Q 041942 380 CSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451 (498)
Q Consensus 380 ~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (498)
+...++++.|...+.+..+ ..|+ ...|...|++++|...|+++++.+|.++.+|..++.+|.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 7777778888777777766 3343 3444577888888888888888999999999999999999999999
Q ss_pred HHHHHHHhhhCC
Q 041942 452 VEKVRKLMDDSD 463 (498)
Q Consensus 452 A~~~~~~m~~~~ 463 (498)
|++.|++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999998754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=128.96 Aligned_cols=228 Identities=13% Similarity=0.106 Sum_probs=150.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc----hh
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSV----GERP-DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK----VL 305 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 305 (498)
++..+...|...|++++|...+++.... +-.| ...++..+...+...|++++|...+++.+.......+ ..
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 4445555555555555555555544321 1111 1234445555556666666666665444332221111 33
Q ss_pred hHHHHHHHHHhcCC--------------------HHHHHHHHhcCCC-----C----ChhHHHHHHHHHHhCCCHHHHHH
Q 041942 306 HGNALIDMYAKCGS--------------------IERAIEVFLGMRD-----R----DVSTWSTLIGGLAFHGFAEESIA 356 (498)
Q Consensus 306 ~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~ 356 (498)
.+..+...|...|+ +++|...+++..+ . ...++..+...|...|++++|..
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 45566666667777 7777666654431 1 23578889999999999999999
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----------hhHHHhhCChHHHHH
Q 041942 357 MFREMQRLKV-RPT----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----------IRHYGVHGDVELGRL 420 (498)
Q Consensus 357 ~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----------~~~y~~~g~~~~a~~ 420 (498)
.+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ...|...|++++|..
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 9999875210 112 337788889999999999999999998762222222 334448999999999
Q ss_pred HHHHHHccCCCC------CchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 421 ANKRLLNMRKDE------SGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 421 ~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
.+++++++.+.. ..++..++.+|...|++++|...+++..+.
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999875543 458899999999999999999999987643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.1e-12 Score=109.36 Aligned_cols=195 Identities=11% Similarity=0.003 Sum_probs=133.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 041942 203 VSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279 (498)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 279 (498)
..+..+...+...|++++|.+.|+++.+ .+...+..+...|...|++++|...++++.+.. +.+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 4455556666666666666666665442 345566677777777777777777777776553 335566777777777
Q ss_pred cc-CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHH
Q 041942 280 DL-GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESI 355 (498)
Q Consensus 280 ~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 355 (498)
.. |++++|...+++.+.....+.+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 77 777777777755554111222355666777777788888888887776542 35677888888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 356 AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 356 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
..++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9888888743113566666677777888888888888887765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-12 Score=120.12 Aligned_cols=233 Identities=10% Similarity=0.045 Sum_probs=117.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCC-hHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 041942 173 AWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGE-MEKANELFNEVPK---RDVVSWNAMISGYVL 245 (498)
Q Consensus 173 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 245 (498)
.|..+...+.+.|++++|+..++++. +.+...|..+..++...|+ +++|...|+++.+ .+...|+.+..++..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 44555555555555566655555554 3334455555555555554 5555555555442 234455555555555
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHH
Q 041942 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325 (498)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (498)
.|++++|+..|+++++.. +-+...|..+..++...|++++|...+++.+.... .
T Consensus 179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P--~----------------------- 232 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV--R----------------------- 232 (382)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--T-----------------------
T ss_pred ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--C-----------------------
Confidence 555555555555555442 22444455555555555555555555544443332 2
Q ss_pred HHhcCCCCChhHHHHHHHHHHh-CCCHHHH-----HHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC--CHHHHHHHHHHh
Q 041942 326 VFLGMRDRDVSTWSTLIGGLAF-HGFAEES-----IAMFREMQRLKVRPT-EITFVGVLVACSHAG--KVEEGKKYFKLM 396 (498)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g--~~~~a~~~~~~~ 396 (498)
+...|+.+..++.. .|..++| +..+++.++ +.|+ ...|..+...+...| ++++|.+.+.++
T Consensus 233 --------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 233 --------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp --------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 33444444444444 3332444 244444444 2332 344444444444444 344554444443
Q ss_pred HHhcCCCCC--------hhHHHhh--------C-ChHHHHHHHHHH-HccCCCCCchHHHHHHHHHh
Q 041942 397 RDEYNIEPN--------IRHYGVH--------G-DVELGRLANKRL-LNMRKDESGDYVLLSNIYAS 445 (498)
Q Consensus 397 ~~~~~~~p~--------~~~y~~~--------g-~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 445 (498)
+ ..|+ ...|.+. + .+++|..+|+++ ++++|.....|..++..+..
T Consensus 303 -~---~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 303 -Q---PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp -T---TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred -c---cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 2333 1122222 2 246777788887 77888888888888776654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-11 Score=110.69 Aligned_cols=214 Identities=12% Similarity=0.069 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC-CCCcchHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhhHHHHHHHHHh---
Q 041942 175 SSLTAGYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAK----QGEMEKANELFNEVPK-RDVVSWNAMISGYVL--- 245 (498)
Q Consensus 175 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~--- 245 (498)
..+...+...|++++|+..|++.. +.+...+..+...|.. .+++++|.+.|++..+ .+..++..+...|..
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~ 89 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQG 89 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCC
Confidence 333334444444444444444333 2222333334444444 4444444444444332 233444445555555
Q ss_pred -CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh----
Q 041942 246 -CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD----LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK---- 316 (498)
Q Consensus 246 -~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 316 (498)
.+++++|...|++..+.+ +...+..+...+.. .+++++|...|++.+... +...+..+...|..
T Consensus 90 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 90 VSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSS
T ss_pred cccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCC
Confidence 555555555555555443 33444444444444 555555555553333221 22233334444444
Q ss_pred cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----cCCHH
Q 041942 317 CGSIERAIEVFLGMRD-RDVSTWSTLIGGLAF----HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH----AGKVE 387 (498)
Q Consensus 317 ~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~ 387 (498)
.+++++|...|++..+ .+...+..+...|.. .+++++|+..+++..+.+ | ...+..+...+.+ .++++
T Consensus 163 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~ 239 (273)
T 1ouv_A 163 PKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEK 239 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCST
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHH
Confidence 4455555554444332 233444445555555 555555555555555432 1 3334444444444 44444
Q ss_pred HHHHHHHHhHH
Q 041942 388 EGKKYFKLMRD 398 (498)
Q Consensus 388 ~a~~~~~~~~~ 398 (498)
+|.+.+++..+
T Consensus 240 ~A~~~~~~a~~ 250 (273)
T 1ouv_A 240 QAIENFKKGCK 250 (273)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-13 Score=122.84 Aligned_cols=227 Identities=12% Similarity=0.054 Sum_probs=128.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhh------cCC
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSV-------GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT------SGV 301 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~ 301 (498)
++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++.+... ..+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4444555555555555555555555431 112223344455555555555555555554443321 112
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHhcCCC----------C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHC------
Q 041942 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRD----------R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRL------ 364 (498)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------ 364 (498)
.....+..+...|...|++++|...+++..+ + ....+..+...+...|++++|+++++++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 2234455555666666666666666554431 1 2345667777777788888888888777653
Q ss_pred CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc------CCCCC--------------hhHHHhhCChHHHHHHHH
Q 041942 365 KVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEY------NIEPN--------------IRHYGVHGDVELGRLANK 423 (498)
Q Consensus 365 ~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~p~--------------~~~y~~~g~~~~a~~~~~ 423 (498)
+..|. ..++..+...+...|++++|.+.++++.+.. ...+. ...+...+.+.++...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 11332 4466677777888888888888887776510 11111 111115556666777788
Q ss_pred HHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.+....|....++..++.+|...|++++|++.+++..+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88877888889999999999999999999999999875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-12 Score=126.38 Aligned_cols=203 Identities=9% Similarity=-0.012 Sum_probs=146.9
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc-hHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL-EVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVF 327 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (498)
+++++..++...... +.+...+..+...+...|++ ++|...|++.+...+ .+...+..+...|...|++++|...|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP--ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455555555544332 33556666666777777777 777777755555432 33556667777777777777777777
Q ss_pred hcCC--CCChhHHHHHHHHHHhC---------CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhc--------CCHH
Q 041942 328 LGMR--DRDVSTWSTLIGGLAFH---------GFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHA--------GKVE 387 (498)
Q Consensus 328 ~~~~--~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~--------g~~~ 387 (498)
++.. .|+...+..+...|... |++++|+..++++.+ +.|+ ...|..+..++... |+++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 7654 35566777777777777 888888888888887 3453 67777777888777 8888
Q ss_pred HHHHHHHHhHHhcCCCC---C--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHH
Q 041942 388 EGKKYFKLMRDEYNIEP---N--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVR 456 (498)
Q Consensus 388 ~a~~~~~~~~~~~~~~p---~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (498)
+|.+.+++..+ +.| + ...|...|++++|...|+++++++|+++.++..++.++...|++++|++.+
T Consensus 239 ~A~~~~~~al~---~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEK---VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHH---HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH---hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888877 345 3 344447888888888899999899999999999999999999999999765
Q ss_pred HHh
Q 041942 457 KLM 459 (498)
Q Consensus 457 ~~m 459 (498)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=122.79 Aligned_cols=223 Identities=9% Similarity=0.011 Sum_probs=129.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc-----hhhHH
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSV----GERP-DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-----VLHGN 308 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 308 (498)
....+...|++++|...+++..+. +-.+ ...++..+...+...|+++.|...+.+.+......++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455556666666666665532 1111 1234555555566666666666666444443222221 23445
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHH
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRD-----RD----VSTWSTLIGGLAFHGFAEESIAMFREMQRL----KVRP-TEITFV 374 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~ 374 (498)
.+...|...|++++|...|++..+ ++ ..++..+..+|...|++++|+..+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 556666666666666666655442 11 135666777777777777777777766551 2212 245566
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----------hhHHHhhCC---hHHHHHHHHHHHccCCCCCchHHHHHH
Q 041942 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPN----------IRHYGVHGD---VELGRLANKRLLNMRKDESGDYVLLSN 441 (498)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----------~~~y~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 441 (498)
.+...+.+.|++++|...+++..+...-.++ ...|...|+ +++|...+++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 6667777777777777777766552111111 122225555 66666666665 223334567889999
Q ss_pred HHHhCCCchHHHHHHHHhhhC
Q 041942 442 IYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~ 462 (498)
.|...|++++|...+++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998753
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-10 Score=112.17 Aligned_cols=141 Identities=8% Similarity=-0.080 Sum_probs=98.3
Q ss_pred HHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCC---CCChhhHHHHHHHHhccCC---hHHHHHHHHHHHh
Q 041942 25 QALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQN---PLDAVFLYTQMEK 98 (498)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~m~~ 98 (498)
+...+... +-|...|..++. ...+ .+.++.+..+|+++. +.+...|...+..-.+.|+ ++.+..+|++...
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~-~~~~-~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLK-HHVS-LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHC-cCCHHHHHHHHH-HHHh-cCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 44444443 468888999998 7777 889999999998886 5566778888888888888 9999999999887
Q ss_pred CC-CCCCHhhHHHHHHHhhcccch--------hhHHHHHHHHHH-hCC-CCC-hHHHHHHHHHHHh---------cCChh
Q 041942 99 CS-IKPNKFTFSFVLKACTRLLYR--------NMGFCVHGKIVK-YGF-EFN-RFVRNSLIYFHAN---------CGDLN 157 (498)
Q Consensus 99 ~~-~~p~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~g~~~ 157 (498)
.. .+|+...|..-+....+.++. +.+.++|+..+. .|. .++ ...|...+..... .++++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 53 137888888777765554443 334577777665 355 444 4688887776542 34567
Q ss_pred HHHHhhccCCC
Q 041942 158 TASVLFDGDAK 168 (498)
Q Consensus 158 ~A~~~~~~~~~ 168 (498)
.+.++|+....
T Consensus 212 ~~R~iy~raL~ 222 (679)
T 4e6h_A 212 YIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 78888876554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-11 Score=115.67 Aligned_cols=287 Identities=10% Similarity=0.048 Sum_probs=133.3
Q ss_pred hccCChHHHHHHHHHHHhC--CCCCCH--hhHHHHHHH--hhcccchhhHH-----------HHHHHHHHhCCCCC----
Q 041942 81 AQSQNPLDAVFLYTQMEKC--SIKPNK--FTFSFVLKA--CTRLLYRNMGF-----------CVHGKIVKYGFEFN---- 139 (498)
Q Consensus 81 ~~~g~~~~A~~~~~~m~~~--~~~p~~--~~~~~li~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~---- 139 (498)
.+.+++++|..+++++.+. .+..|. ..|-.++.. ....++.+.+. +.++.+.....+.+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 5677888888888777542 122233 233333322 11223333343 56666544221111
Q ss_pred hHHHHHHHHHHHhcCChhHHHHhhccCCC-----C----CcchHHHHHHHHHhcCChHHHHHHHhcCC-----CCC----
Q 041942 140 RFVRNSLIYFHANCGDLNTASVLFDGDAK-----M----DVVAWSSLTAGYARRGELSMARSLFDEMP-----VRD---- 201 (498)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~---- 201 (498)
...+......+...|++++|...|++... + ...++..+...+...|++++|+..+++.. .++
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 01122255566677777777777764322 1 22356666667777777777776665543 111
Q ss_pred -cchHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhC----CC-CC
Q 041942 202 -LVSWNVMITGYAKQGEMEKANELFNEVPK-----RD----VVSWNAMISGYVLCGMNKQALEMFEEMRSV----GE-RP 266 (498)
Q Consensus 202 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~-~p 266 (498)
..++..+..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|...+++..+. +. +.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 12344444455555555555554444331 11 123444444555555555555555444331 11 11
Q ss_pred CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 041942 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLA 346 (498)
Q Consensus 267 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 346 (498)
...++..+...+...|++++|...+++.+.......+.. ....+..+...|.
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------~~~~~~~l~~~~~ 314 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI----------------------------YLSEFEFLKSLYL 314 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH----------------------------HHHHHHHHHHHHh
Confidence 223344444444444444444444433322211000000 0112344555555
Q ss_pred hCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 347 FHGF---AEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 347 ~~~~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
..|+ +++|+.++++. +..|+ ...+..+...|...|++++|...+++..+
T Consensus 315 ~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 315 SGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp SSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555 44455444443 22222 33445555666666666666666666554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=124.91 Aligned_cols=266 Identities=14% Similarity=0.065 Sum_probs=150.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH----hhHHHHHHHhhcccchhhHHHHHHHHHHhC-----CCCChHHH
Q 041942 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNK----FTFSFVLKACTRLLYRNMGFCVHGKIVKYG-----FEFNRFVR 143 (498)
Q Consensus 73 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 143 (498)
+..+...+...|++++|+..|++..+.+ +.+. ..|..+...+...|+++.|...+++..+.. .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3345556677777777777777776642 1122 356666666777777777777777665531 11223455
Q ss_pred HHHHHHHHhcCChhHHHHhhccCCC---------CCcchHHHHHHHHHhcCC-----------------hHHHHHHHhcC
Q 041942 144 NSLIYFHANCGDLNTASVLFDGDAK---------MDVVAWSSLTAGYARRGE-----------------LSMARSLFDEM 197 (498)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~ 197 (498)
..+...|...|++++|...|++... ....++..+...+...|+ +++|+..+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 6666666666666666666554321 012234444444444555 44444443332
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCC-CCC----HHH
Q 041942 198 PVRDLVSWNVMITGYAKQGEMEKANELFNEVPKR--DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPD----DVT 270 (498)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~ 270 (498)
. ++......+ ...++..+...|...|++++|...+++..+... .++ ...
T Consensus 210 l------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (411)
T 4a1s_A 210 L------------------------KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265 (411)
T ss_dssp H------------------------HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred H------------------------HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 1 111111010 123455556666666666666666665543210 011 125
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhhcCC----cchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-----C----ChhH
Q 041942 271 MLSLLTACADLGDLEVGKKVHCTLLDMTSGV----AKVLHGNALIDMYAKCGSIERAIEVFLGMRD-----R----DVST 337 (498)
Q Consensus 271 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~ 337 (498)
+..+...+...|++++|...+++.+...... .....+..+...|...|++++|...+++..+ . ...+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 5566666666777777766665444432211 1134556677777777777777777766542 1 1346
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
+..+...|...|++++|.+.+++..+
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77788889999999999999998877
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=119.76 Aligned_cols=266 Identities=15% Similarity=0.107 Sum_probs=151.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHhhcccchhhHHHHHHHHHHh----CCC-CChHHH
Q 041942 73 YNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN----KFTFSFVLKACTRLLYRNMGFCVHGKIVKY----GFE-FNRFVR 143 (498)
Q Consensus 73 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 143 (498)
+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...+++..+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344555677778888888887776642 112 245666667777777777777777766542 111 123455
Q ss_pred HHHHHHHHhcCChhHHHHhhccCCC-----CC----cchHHHHHHHHHhcCC--------------------hHHHHHHH
Q 041942 144 NSLIYFHANCGDLNTASVLFDGDAK-----MD----VVAWSSLTAGYARRGE--------------------LSMARSLF 194 (498)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~ 194 (498)
..+...|...|++++|...+++... .+ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 5666666666666666666554321 11 1134444444555555 44444444
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHhC----CCCC-C
Q 041942 195 DEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK--RDVVSWNAMISGYVLCGMNKQALEMFEEMRSV----GERP-D 267 (498)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~ 267 (498)
++.. .++..... ....++..+...+...|++++|...+++..+. +..+ .
T Consensus 167 ~~a~------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 222 (338)
T 3ro2_A 167 EENL------------------------SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 222 (338)
T ss_dssp HHHH------------------------HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHH------------------------HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHH
Confidence 3321 01111000 01234555566666666666666666655422 1000 1
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc----hhhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----
Q 041942 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK----VLHGNALIDMYAKCGSIERAIEVFLGMRD-----RD---- 334 (498)
Q Consensus 268 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~---- 334 (498)
..++..+...+...|++++|...+++.+.......+ ...+..+...+...|++++|...+++..+ .+
T Consensus 223 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 302 (338)
T 3ro2_A 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 225556666666777777777766554433221111 44556677777778888888777766542 11
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
..++..+...|...|++++|...++++.+
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 303 GRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34677788889999999999999998887
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-10 Score=106.72 Aligned_cols=242 Identities=8% Similarity=0.036 Sum_probs=163.1
Q ss_pred HHHHHHHhcCC---CCCcchHHHHHHHHH-------hcCCh-------HHHHHHHhhCCC---C-ChhhHHHHHHHHHhC
Q 041942 188 SMARSLFDEMP---VRDLVSWNVMITGYA-------KQGEM-------EKANELFNEVPK---R-DVVSWNAMISGYVLC 246 (498)
Q Consensus 188 ~~A~~~~~~~~---~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~~ 246 (498)
+.|...|++.. +.++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 45666666665 445566666666554 34665 788888877653 2 445788888888888
Q ss_pred CChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHH-hcCCHHHH
Q 041942 247 GMNKQALEMFEEMRSVGERPD-DV-TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA-KCGSIERA 323 (498)
Q Consensus 247 g~~~~a~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A 323 (498)
|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++.+...+ .+...|........ ..|+.++|
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888864 443 22 677788888888888888888866655433 23334433333322 26888888
Q ss_pred HHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 324 IEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLK-VRP--TEITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 324 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
..+|++..+ .+...|..++..+.+.|++++|..+|++.+... +.| ....|..++....+.|+.+.|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887653 366788888888888899999999999988853 455 35677778888888899999999988887
Q ss_pred HhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 398 DEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 398 ~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
+..+-.++... -.......+++.++|+++...+.|+
T Consensus 269 ~~~p~~~~~~~-------~~~~~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 269 TAFREEYEGKE-------TALLVDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HHTTTTTSSCH-------HHHHHTTTCBTTBCSSCHHHHHTTT
T ss_pred HHcccccccch-------HHHHHHHHHhcccCCCCHHHHHhcC
Confidence 74332222210 0111122244467788877777664
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.2e-12 Score=125.66 Aligned_cols=154 Identities=16% Similarity=0.225 Sum_probs=121.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLV 378 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~ 378 (498)
+...++.|...|.+.|++++|+..|++..+ .+..+|..+..+|.+.|++++|++.|++.++ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 355666777777777777777777776552 3566777888888888888888888888877 4564 667777888
Q ss_pred HHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCch
Q 041942 379 ACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (498)
++.+.|++++|++.+++..+ +.|+ ...|...|++++|...|+++++++|+++.++..++.+|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 88888888888888888877 4565 334448888888888999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 041942 451 RVEKVRKLMDD 461 (498)
Q Consensus 451 ~A~~~~~~m~~ 461 (498)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-09 Score=106.94 Aligned_cols=394 Identities=10% Similarity=0.028 Sum_probs=238.5
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccc---hhhHHHHHHHHHHhC-CCCChHH
Q 041942 67 EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLY---RNMGFCVHGKIVKYG-FEFNRFV 142 (498)
Q Consensus 67 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 142 (498)
+-|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ .+.+..+|++.+... .+|+...
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 457778888888888888888888888888765 45566677777777777777 888888888888754 1367778
Q ss_pred HHHHHHHHHhcCCh--------hHHHHhhccC-----C-CC-CcchHHHHHHHHH---------hcCChHHHHHHHhcCC
Q 041942 143 RNSLIYFHANCGDL--------NTASVLFDGD-----A-KM-DVVAWSSLTAGYA---------RRGELSMARSLFDEMP 198 (498)
Q Consensus 143 ~~~l~~~~~~~g~~--------~~A~~~~~~~-----~-~~-~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~ 198 (498)
|...+....+.++. +.+.++|+.. . .+ +...|...+.... ..++++.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 87777766665543 2233566531 1 22 3345666665433 2334667777887776
Q ss_pred -CCCc---chHH---HHHHHH----------HhcCChHHHHHHHhh-------CCC--------------C--C------
Q 041942 199 -VRDL---VSWN---VMITGY----------AKQGEMEKANELFNE-------VPK--------------R--D------ 232 (498)
Q Consensus 199 -~~~~---~~~~---~l~~~~----------~~~~~~~~A~~~~~~-------~~~--------------~--~------ 232 (498)
.|.. .+|. .+.... -...+++.|...+.+ +.+ | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 2211 1221 111110 001123334444432 111 0 0
Q ss_pred hhhHHHHHHHHHhCC-------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHH-HHHHHHHHhhcCCcch
Q 041942 233 VVSWNAMISGYVLCG-------MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGK-KVHCTLLDMTSGVAKV 304 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~ 304 (498)
...|...+..--..+ ..+.+..+|++.+..- +-....|...+.-+...|+.+.|. .+|+..+... +.+.
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--P~s~ 378 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--PNSA 378 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--CCCH
Confidence 123444444333322 1234556677776542 346666777777777778888885 8886555422 3455
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCC-------------CC------------hhHHHHHHHHHHhCCCHHHHHHHHH
Q 041942 305 LHGNALIDMYAKCGSIERAIEVFLGMRD-------------RD------------VSTWSTLIGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (498)
..+..++....+.|++++|.++|+++.+ |+ ...|...+....+.|+.+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666777777788888888888876653 21 2357777777777788888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHhHHhcCCCCCh-hHHH----hhCChHHHHHHHHHHHccCCC--
Q 041942 360 EMQRLKVRPTEITFVGVLVACSHA-GKVEEGKKYFKLMRDEYNIEPNI-RHYG----VHGDVELGRLANKRLLNMRKD-- 431 (498)
Q Consensus 360 ~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~~-~~y~----~~g~~~~a~~~~~~~~~~~~~-- 431 (498)
++.+.-..+....|...+..-.+. ++.+.|..+|+...+.++-.|.. ..|. ..|+.+.|+.+|++++...|+
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 887741012233443333322333 45788888888887754443331 1222 678888888888888877663
Q ss_pred -CCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 432 -ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 432 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
....|..++..-.+.|+.+.+..+.+++.+.-.
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345788888888888888888888888876544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-10 Score=97.07 Aligned_cols=159 Identities=13% Similarity=-0.004 Sum_probs=132.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVAC 380 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 380 (498)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34456677888899999999999998875 367788889999999999999999999998842 33577888888999
Q ss_pred hhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHH
Q 041942 381 SHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455 (498)
Q Consensus 381 ~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 455 (498)
...|++++|.+.++++.+..+..+. ...|...|++++|...++++++..|.++.++..++.++...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999998883222111 34455899999999999999999999999999999999999999999999
Q ss_pred HHHhhhCC
Q 041942 456 RKLMDDSD 463 (498)
Q Consensus 456 ~~~m~~~~ 463 (498)
++++.+..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 99997654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-10 Score=97.03 Aligned_cols=162 Identities=13% Similarity=0.079 Sum_probs=100.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHH
Q 041942 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311 (498)
Q Consensus 232 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 311 (498)
+...|..+...|...|++++|+..|++..+.. +-+..++..+..++...|++++|...+........ .+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--TSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 34556666666666677777777766666543 23455666666666666666666666644443332 2333444555
Q ss_pred HHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHH
Q 041942 312 DMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVE 387 (498)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~ 387 (498)
..+...++++.|...+.+.. ..+...+..+...|...|++++|++.|++..+ +.| +..++..+..++.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHHCCCHH
Confidence 56666666666666665543 23456666677777777777777777777766 334 3566666677777777777
Q ss_pred HHHHHHHHhHH
Q 041942 388 EGKKYFKLMRD 398 (498)
Q Consensus 388 ~a~~~~~~~~~ 398 (498)
+|.+.+++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777665
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-09 Score=100.81 Aligned_cols=195 Identities=11% Similarity=0.031 Sum_probs=119.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHH--
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGER----PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN-- 308 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 308 (498)
.+..+...+...|++++|...+++....... ....++..+...+...|++++|...+++.............+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 4455666667777777777777766543211 1234556666777777888888887755544322111111111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHhcCCCCC-------hhHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCH-HHH
Q 041942 309 ---ALIDMYAKCGSIERAIEVFLGMRDRD-------VSTWSTLIGGLAFHGFAEESIAMFREMQRL----KVRPTE-ITF 373 (498)
Q Consensus 309 ---~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~~-~~~ 373 (498)
..+..+...|++++|...+++...++ ...+..+...+...|++++|...+++.... |..++. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 23344678899999999988776532 124567788899999999999999887652 222222 255
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCC
Q 041942 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKD 431 (498)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~ 431 (498)
..+..++...|+.++|...+++......-......+...| +....+++.+....|.
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 6667788899999999999988876211111123333333 4455555655555543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-10 Score=109.65 Aligned_cols=220 Identities=9% Similarity=0.031 Sum_probs=123.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc-----chhhHHH
Q 041942 240 ISGYVLCGMNKQALEMFEEMRSVGE-RPD----DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-----KVLHGNA 309 (498)
Q Consensus 240 ~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 309 (498)
...+...|++++|...|++..+... .++ ..++..+...+...|+++.|...+.+.+......+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3344555666666666655543210 011 23444555555566666666655544443322111 1334455
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 041942 310 LIDMYAKCGSIERAIEVFLGMRD-----RD----VSTWSTLIGGLAFHGFAEESIAMFREMQR-----LKVRPTEITFVG 375 (498)
Q Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 375 (498)
+...|...|++++|.+.|++..+ ++ ..++..+..+|...|++++|+..+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 55666666666666666554432 11 23566666677777777777777776655 22 122555666
Q ss_pred HHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----------hhHHHhhCC---hHHHHHHHHHHHccCCCCCchHHHHHHH
Q 041942 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPN----------IRHYGVHGD---VELGRLANKRLLNMRKDESGDYVLLSNI 442 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----------~~~y~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 442 (498)
+...+.+.|++++|...+++..+...-.++ ...|...++ +.+|...+++. ...|.....+..++..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 666777777777777777776662222111 112224455 56666666652 1223334577889999
Q ss_pred HHhCCCchHHHHHHHHhhh
Q 041942 443 YASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~ 461 (498)
|...|++++|...|++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-10 Score=101.75 Aligned_cols=211 Identities=11% Similarity=-0.000 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHhhc-------ccch-------hhHHHHHHHHHHhCCCCChHHHHHHHHHHHh
Q 041942 87 LDAVFLYTQMEKCSIKPNKFTFSFVLKACTR-------LLYR-------NMGFCVHGKIVKYGFEFNRFVRNSLIYFHAN 152 (498)
Q Consensus 87 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (498)
++|..+|++..... +-+...|..+...+.. .|+. ++|..+|++.++.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555555555431 2344445444444432 2443 5555555555552112234455555555555
Q ss_pred cCChhHHHHhhccCCC--C-Ccc-hHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHH-hcCChHHHHHH
Q 041942 153 CGDLNTASVLFDGDAK--M-DVV-AWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYA-KQGEMEKANEL 224 (498)
Q Consensus 153 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~-~~~~~~~A~~~ 224 (498)
.|++++|.++|++... | +.. .|..++..+.+.|++++|..+|++.. +.+...|........ ..|+.++|.++
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555554332 1 222 45555555555555555555555544 122222322222211 24556666666
Q ss_pred HhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHhccCCchHHHHHHHHHHHhh
Q 041942 225 FNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVG-ERP--DDVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298 (498)
Q Consensus 225 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 298 (498)
|++..+ .+...|..++..+.+.|++++|..+|++..... +.| ....|..++......|+.+.|..++++.+...
T Consensus 192 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 555542 244556666666666666666666666666542 233 23455555555556666666666664444433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-10 Score=106.79 Aligned_cols=161 Identities=11% Similarity=0.044 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCchHHHHHHHHHHHh---hcCCcchhh
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSV----GERP-DDVTMLSLLTACADLGDLEVGKKVHCTLLDM---TSGVAKVLH 306 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~ 306 (498)
+++.+...|...|++++|...+++..+. +..+ ...++..+..++...|++++|...+++.+.. .+.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3444555555555555555555444321 1111 1224444555555555555555555443331 011222444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC-------C-ChhHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCC-HHHHH
Q 041942 307 GNALIDMYAKCGSIERAIEVFLGMRD-------R-DVSTWSTLIGGLAFHGF---AEESIAMFREMQRLKVRPT-EITFV 374 (498)
Q Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~-------~-~~~~~~~l~~~~~~~~~---~~~A~~~~~~m~~~~~~p~-~~~~~ 374 (498)
+..+...|.+.|++++|...+++..+ + ....+..+...|...++ +.+|+.++++ .+..|+ ...+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHH
Confidence 45555556666666666555554321 1 11234444445555555 5555555544 222222 33445
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 375 GVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+...|...|++++|...+++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666667777777766666544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-09 Score=95.02 Aligned_cols=201 Identities=8% Similarity=-0.000 Sum_probs=136.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHH
Q 041942 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALI 311 (498)
Q Consensus 232 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 311 (498)
|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++.+...+ .+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY--NLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--SHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc--chHHHHHHHH
Confidence 44566667777777777777777777777665335666666677777777777777777755554332 3455666677
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--C-Ch-------hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 041942 312 DMYAKCGSIERAIEVFLGMRD--R-DV-------STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT---EITFVGVLV 378 (498)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~~~~--~-~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~ 378 (498)
..|...|++++|...|++..+ | +. ..|..+...+...|++++|++.|+++++ ..|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence 777777777777777776552 2 33 4577788888889999999999999888 4565 456666666
Q ss_pred HHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH-----hhCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 379 ACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-----VHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~-----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
.+...| ...++++.. .+ ..+...|. ..+.+++|...++++++++|+++.+...+..+.
T Consensus 162 ~~~~~~-----~~~~~~a~~-~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATP-LA-SSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHH-----HHHHHHHGG-GT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHh-cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 665544 334444444 11 11222222 567789999999999999999988877776654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-11 Score=108.00 Aligned_cols=194 Identities=13% Similarity=0.064 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHhh------cCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC-------C--
Q 041942 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMT------SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD-------R-- 333 (498)
Q Consensus 269 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~-- 333 (498)
.++..+...+...|++++|...+++.+... ..+.....+..+...|...|++++|...+++..+ +
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344444445555555555555554333321 1122233445555555555666555555554331 1
Q ss_pred --ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc----
Q 041942 334 --DVSTWSTLIGGLAFHGFAEESIAMFREMQRL------KVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEY---- 400 (498)
Q Consensus 334 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 400 (498)
...++..+...|...|++++|...++++.+. +-.|. ..++..+...+...|++++|...++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2346677777778888888888888777663 11232 4567777788888888888888888876620
Q ss_pred --CCCCC-hhHHH-------------hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 401 --NIEPN-IRHYG-------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 401 --~~~p~-~~~y~-------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
...+. ...+. ....+..+...++......|....++..++.+|...|++++|..++++..+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 11111 1222344444444443444555678999999999999999999999998753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.9e-11 Score=114.16 Aligned_cols=220 Identities=12% Similarity=0.010 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccch-hhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhc
Q 041942 86 PLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYR-NMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFD 164 (498)
Q Consensus 86 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 164 (498)
++++++.++...... +.+...+..+...+...|++ ++|...|++.++.. +.+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555554431 23555666666666666666 77777776666653 2345556666666666666666666655
Q ss_pred cCCC--CCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHH
Q 041942 165 GDAK--MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAM 239 (498)
Q Consensus 165 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 239 (498)
+... |+...+..+...+...+.- ....+.|++++|.+.|++..+ .+...|..+
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 219 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTD----------------------SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL 219 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCS----------------------CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccC----------------------ChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4332 3333444444444444000 000000444555555544432 244556666
Q ss_pred HHHHHhC--------CChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHH
Q 041942 240 ISGYVLC--------GMNKQALEMFEEMRSVGER--PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNA 309 (498)
Q Consensus 240 ~~~~~~~--------g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 309 (498)
..+|... |++++|+..|++..+.... -+...+..+..++...|++++|...|++.+...+ .+...+..
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~a~~~ 297 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP--AWPEPQQR 297 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHH
Confidence 6666665 6677777777777664210 3566777777777777777777777755555443 23445566
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC
Q 041942 310 LIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 310 l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
+..++...|++++|.+.+.++.
T Consensus 298 l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 298 EQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 7777777888888888777764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-10 Score=104.22 Aligned_cols=226 Identities=16% Similarity=0.169 Sum_probs=126.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCCC--------CC---cchHHHHHHHHHhcCChHHHHHHHhhCCC-------C-
Q 041942 171 VVAWSSLTAGYARRGELSMARSLFDEMPV--------RD---LVSWNVMITGYAKQGEMEKANELFNEVPK-------R- 231 (498)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~- 231 (498)
..++..+...+...|++++|..+++++.. .+ ...+..+...+...|++++|...++++.+ +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34577777888888888888888877651 11 23566667777777777777777766542 1
Q ss_pred ---ChhhHHHHHHHHHhCCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccCCchHHHHHHHHHHHhh---
Q 041942 232 ---DVVSWNAMISGYVLCGMNKQALEMFEEMRSV------GERP-DDVTMLSLLTACADLGDLEVGKKVHCTLLDMT--- 298 (498)
Q Consensus 232 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--- 298 (498)
...++..+...|...|++++|...+++..+. +..| ....+..+...+...|++++|..++++.+...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 2345666777777777777777777776643 2122 23455666666777777777777775554431
Q ss_pred ---cCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCC------------------ChhHHHHHHHHHHhCCCHHHHHHH
Q 041942 299 ---SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDR------------------DVSTWSTLIGGLAFHGFAEESIAM 357 (498)
Q Consensus 299 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~l~~~~~~~~~~~~A~~~ 357 (498)
..+.....+..+...|...|++++|...++++.+. ....+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 11223345556666666777777776666654420 011122222233333444444445
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 358 FREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 358 ~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
++..... .| ...++..+..+|.+.|++++|.+.+++..+
T Consensus 267 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5544431 22 245566666666777777777777666654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-10 Score=99.39 Aligned_cols=191 Identities=10% Similarity=0.021 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHH
Q 041942 266 PDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLI 342 (498)
Q Consensus 266 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~ 342 (498)
.++..+......+...|++++|...|++.+...+ .++...+..+..++...|++++|...|++..+ | +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3456666667777777777777777755554432 23344444466666677777777777665542 2 345666666
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC---hhHHHh
Q 041942 343 GGLAFHGFAEESIAMFREMQRLKVRPT-E-------ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN---IRHYGV 411 (498)
Q Consensus 343 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~y~~ 411 (498)
.+|...|++++|+..+++..+ ..|+ . ..|..+...+...|++++|.+.++++.+ ..|+ ...|..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 677777777777777777666 3343 3 2344444555555555555555555544 3343 122222
Q ss_pred hCC--hHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 412 HGD--VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 412 ~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
.|. ...+...++++..+.+.+...|... .....+.+++|+..+++..+...
T Consensus 159 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC
Confidence 221 2233334444444444443332222 12233445999999999987544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-09 Score=94.54 Aligned_cols=240 Identities=13% Similarity=0.048 Sum_probs=139.6
Q ss_pred HHhcCChHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 041942 181 YARRGELSMARSLFDEMPVRDLV-SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEM 259 (498)
Q Consensus 181 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 259 (498)
..-.|++..++.-...+.+.+.. .-..+.++|...|+..... ...|....+..+...+ ..+ |...|+++
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-----~~~~~~~a~~~la~~~-~~~----a~~~l~~l 92 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD-----PTSKLGKVLDLYVQFL-DTK----NIEELENL 92 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC-----SSSTTHHHHHHHHHHH-TTT----CCHHHHHT
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC-----CCCHHHHHHHHHHHHh-ccc----HHHHHHHH
Confidence 34456666666654444422221 2223346666666655310 1123333333333332 322 66777777
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C----
Q 041942 260 RSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R---- 333 (498)
Q Consensus 260 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---- 333 (498)
...+ .++..++..+..++...|++++|.+++.+.+......-+...+..++..+.+.|+.+.|.+.+++|.+ |
T Consensus 93 ~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~ 171 (310)
T 3mv2_B 93 LKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVS 171 (310)
T ss_dssp TTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHH
T ss_pred HhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccc
Confidence 6655 45566666777778888888888888844433322123556666778888888888888888887764 3
Q ss_pred -ChhHHHHHHHH--HHh--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcC----C--
Q 041942 334 -DVSTWSTLIGG--LAF--HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN----I-- 402 (498)
Q Consensus 334 -~~~~~~~l~~~--~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~-- 402 (498)
+..+...++.+ ... .+++++|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+.+..+ .
T Consensus 172 ~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~ 249 (310)
T 3mv2_B 172 GDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKEN 249 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHH
T ss_pred cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccccc
Confidence 13445555555 222 33889999999998763 46544444455588888999999998887655210 0
Q ss_pred -CCC-hhHH-------HhhCChHHHHHHHHHHHccCCCCCch
Q 041942 403 -EPN-IRHY-------GVHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 403 -~p~-~~~y-------~~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
.|+ ..++ ...|+ +|.++++++.+..|+++.+
T Consensus 250 ~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 250 AVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 133 1111 13344 6666666666666666544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-09 Score=88.29 Aligned_cols=157 Identities=18% Similarity=0.133 Sum_probs=89.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 041942 204 SWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD 280 (498)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 280 (498)
.+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~------- 81 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATV------- 81 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH-------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH-------
Confidence 344445555555666666666655543 233445555555555555555555555554432 223333444
Q ss_pred cCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHH
Q 041942 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAM 357 (498)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~ 357 (498)
+...+...|++++|...++++. ..+...+..+...+...|++++|...
T Consensus 82 -----------------------------~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 82 -----------------------------LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp -----------------------------HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------------------HHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 4444444444444444444332 12445566666777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 358 FREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 358 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 133 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77776642 23456677777777777777777777777665
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-08 Score=95.18 Aligned_cols=258 Identities=9% Similarity=0.041 Sum_probs=184.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC----CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHhCCC-CCCH----HHH
Q 041942 205 WNVMITGYAKQGEMEKANELFNEVPK----RDV----VSWNAMISGYVLCGMNKQALEMFEEMRSVGE-RPDD----VTM 271 (498)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~----~~~ 271 (498)
.......+...|++++|...+++... .+. .+++.+...+...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34455567789999999999877542 222 2466677888899999999999998764311 1122 335
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhh---cCC--c-chhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C------ChhH
Q 041942 272 LSLLTACADLGDLEVGKKVHCTLLDMT---SGV--A-KVLHGNALIDMYAKCGSIERAIEVFLGMRD--R------DVST 337 (498)
Q Consensus 272 ~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~------~~~~ 337 (498)
..+...+...|++++|...+++.+... +.. | ....+..+...+...|++++|...+++... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 667778899999999999997766543 221 2 234556678889999999999999986542 1 1346
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC------
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFV-----GVLVACSHAGKVEEGKKYFKLMRDEYNIEPN------ 405 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------ 405 (498)
+..+...+...|++++|...+++.....-.++ ...+. ..+..+...|++++|...+++... ....+.
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~ 255 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK-PEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC-CCCTTCGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC-CCCCcchhhHHH
Confidence 77888999999999999999999876321221 11222 233447789999999999999876 221111
Q ss_pred ----hhHHHhhCChHHHHHHHHHHHccCCCCCc------hHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 406 ----IRHYGVHGDVELGRLANKRLLNMRKDESG------DYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 406 ----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
...+...|++++|...++++++..+.... ++..++.++...|++++|...+++.....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 12344889999999999999987655433 34556888999999999999999998753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-09 Score=97.61 Aligned_cols=123 Identities=7% Similarity=-0.149 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCCh--
Q 041942 337 TWSTLIGGLAFH-GFAEESIAMFREMQRLKVRPT-------EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI-- 406 (498)
Q Consensus 337 ~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-- 406 (498)
+++.+...|... |++++|+..|++..+. .|+ ..++..+...+.+.|++++|...++++.+...-.+..
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 456666667665 7777777777766652 121 2356666677777777777777777776621111111
Q ss_pred ----------hHHHhhCChHHHHHHHHHHHccCCCCCc-----hHHHHHHHHH--hCCCchHHHHHHHHhhh
Q 041942 407 ----------RHYGVHGDVELGRLANKRLLNMRKDESG-----DYVLLSNIYA--SRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 407 ----------~~y~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 461 (498)
..|...|++++|...++++++++|.... .+..++.++. ..+++++|+..|+++..
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 1122667777777777777777776543 2445566664 45678888888877644
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-09 Score=108.39 Aligned_cols=161 Identities=11% Similarity=0.056 Sum_probs=111.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 041942 233 VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALID 312 (498)
Q Consensus 233 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (498)
..+|+.+...|.+.|++++|+..|++.++.. +-+..++..+..++.+.|++++|...|++.++... .+...+..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P--~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Confidence 3456666777777777777777777766542 22455666677777777777777777755554432 33555666777
Q ss_pred HHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHH
Q 041942 313 MYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEE 388 (498)
Q Consensus 313 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 388 (498)
+|...|++++|++.|++..+ .+...|+.+..+|...|++++|++.|++.++ +.|+ ...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHHH
Confidence 77777777777777766542 3566778888888888888888888888877 4564 6677778888888888888
Q ss_pred HHHHHHHhHH
Q 041942 389 GKKYFKLMRD 398 (498)
Q Consensus 389 a~~~~~~~~~ 398 (498)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877777655
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.2e-10 Score=91.08 Aligned_cols=133 Identities=9% Similarity=-0.015 Sum_probs=92.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCH
Q 041942 311 IDMYAKCGSIERAIEVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKV 386 (498)
Q Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~ 386 (498)
..++...|++++|+..++..... +...+..+...|...|++++|++.|++.++ +.| +..+|..+..++.+.|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence 33444556677777777665543 334556677777788888888888888777 445 366777777777888888
Q ss_pred HHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHH-HHHHHHccCCCCCchHHHHHHHHHhCCC
Q 041942 387 EEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRL-ANKRLLNMRKDESGDYVLLSNIYASRGE 448 (498)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (498)
++|...+++..+ +.|+ ...|.+.|++++|.+ .++++++++|+++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888877776 4554 333446777766554 4588888899999999999888888875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-09 Score=97.31 Aligned_cols=211 Identities=10% Similarity=0.034 Sum_probs=144.9
Q ss_pred ChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCCchHHHHHH
Q 041942 217 EMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV----GERPD-DVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
++++|...|++. ...|...|++++|...|.+..+. |-+++ ..+|..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366676666553 55677788888888888776532 32222 457778888888888888888888
Q ss_pred HHHHHhhcCCcc----hhhHHHHHHHHHhc-CCHHHHHHHHhcCCC--C---C----hhHHHHHHHHHHhCCCHHHHHHH
Q 041942 292 CTLLDMTSGVAK----VLHGNALIDMYAKC-GSIERAIEVFLGMRD--R---D----VSTWSTLIGGLAFHGFAEESIAM 357 (498)
Q Consensus 292 ~~~~~~~~~~~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~---~----~~~~~~l~~~~~~~~~~~~A~~~ 357 (498)
++.+.......+ ..++..+...|... |++++|+..|++..+ | + ..++..+...+...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 666554321111 34667788888886 999999988887653 1 1 34688889999999999999999
Q ss_pred HHHHHHCCCCCCH------HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChh-------------HHH--hhCChH
Q 041942 358 FREMQRLKVRPTE------ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR-------------HYG--VHGDVE 416 (498)
Q Consensus 358 ~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------------~y~--~~g~~~ 416 (498)
|++..+....... ..+..+..++...|++++|...+++..+ +.|+.. .|. ..++++
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999884322211 1566777888899999999999999866 555411 111 446788
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHH
Q 041942 417 LGRLANKRLLNMRKDESGDYVLLSN 441 (498)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~l~~ 441 (498)
+|...|++++.++|.....+..+-.
T Consensus 258 ~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp HHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhccCCccHHHHHHHHHHHHH
Confidence 8888888888877766544444433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-09 Score=91.88 Aligned_cols=184 Identities=13% Similarity=-0.038 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc-hhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-h---hHHHH
Q 041942 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRD--RD-V---STWST 340 (498)
Q Consensus 268 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~ 340 (498)
...+..+...+...|++++|...|++.+...+..+. ...+..+..+|.+.|++++|...|+++.+ |+ . ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555666777788888888888666655433222 34555677777788888888888777653 32 1 13444
Q ss_pred HHHHHHh------------------CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcC
Q 041942 341 LIGGLAF------------------HGFAEESIAMFREMQRLKVRPTE-ITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401 (498)
Q Consensus 341 l~~~~~~------------------~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 401 (498)
+..++.. .|++++|+..|+++++. .|+. ...........-.+....+. ..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~----~~----- 152 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYE----YS----- 152 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHH----HH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHH----HH-----
Confidence 4444443 45666777777776663 3432 22211111000000000000 00
Q ss_pred CCCChhHHHhhCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 402 IEPNIRHYGVHGDVELGRLANKRLLNMRKDES---GDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 402 ~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
-...|.+.|++++|...|+++++..|+++ .++..++.+|.+.|++++|++.++.+...+..
T Consensus 153 ---~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 153 ---VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 02356689999999999999999999986 57999999999999999999999999887653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.7e-09 Score=82.08 Aligned_cols=123 Identities=16% Similarity=0.259 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRH 408 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~ 408 (498)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .|+ ...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 34455555566666666666666655532 123445555555666666666666666665552 222 223
Q ss_pred HHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 409 YGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 409 y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
|...|++++|...++++++..|.++.++..++.++...|++++|...++++.+..
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 3366667777777777777788888899999999999999999999999987644
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.8e-09 Score=95.37 Aligned_cols=214 Identities=15% Similarity=0.127 Sum_probs=118.8
Q ss_pred hcCChHHHHHHHhcCC-------CCC----cchHHHHHHHHHhcCChHHHHHHHhhCCC-----------CChhhHHHHH
Q 041942 183 RRGELSMARSLFDEMP-------VRD----LVSWNVMITGYAKQGEMEKANELFNEVPK-----------RDVVSWNAMI 240 (498)
Q Consensus 183 ~~~~~~~A~~~~~~~~-------~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~l~ 240 (498)
..|++++|+.++++.. .++ ..++..+...+...|++++|...++++.+ ....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3455555555554443 122 34666777777777777777777766542 1234566777
Q ss_pred HHHHhCCChHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHhccCCchHHHHHHHHHHHh------hcCCcchhhH
Q 041942 241 SGYVLCGMNKQALEMFEEMRSV------GE-RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM------TSGVAKVLHG 307 (498)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~ 307 (498)
..|...|++++|...+.+.... .- +....++..+...+...|++++|...+++.+.. ...+.....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7777777777777777776643 11 123455666677777777777777777555544 1112234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-----------C-ChhHHHHHHHHHHhCCCHHHHH------HHHHHHHHCCCCC-
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD-----------R-DVSTWSTLIGGLAFHGFAEESI------AMFREMQRLKVRP- 368 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~~~~~~A~------~~~~~m~~~~~~p- 368 (498)
..+...|...|++++|...+++..+ + ....|..+...+...+....+. ..++.... ..|
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 250 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPT 250 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHH
Confidence 6667777777777777777665432 1 1223333333333333222221 11111110 112
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
...++..+...+...|++++|..++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234566666777777777777777776654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.6e-09 Score=85.58 Aligned_cols=149 Identities=10% Similarity=-0.029 Sum_probs=100.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhhc
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVA-CSHA 383 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~ 383 (498)
..+...+...|++++|...|++..+ .+...+..+...+...|++++|+..++++... .|+...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 3455666777777777777777764 35567777777777777777777777776653 3433322221111 1222
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCC--CchHHHHHHHHHhCCCchHHH
Q 041942 384 GKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDE--SGDYVLLSNIYASRGEWNRVE 453 (498)
Q Consensus 384 g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 453 (498)
+....|...+++..+ ..|+ ...|...|++++|...|+++++.+|+. +.++..++.++...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 233346677777666 3444 334447788888888888888888865 569999999999999999999
Q ss_pred HHHHHhhh
Q 041942 454 KVRKLMDD 461 (498)
Q Consensus 454 ~~~~~m~~ 461 (498)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=8e-09 Score=91.56 Aligned_cols=184 Identities=9% Similarity=-0.018 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc-hhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C----ChhHHH
Q 041942 267 DDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VLHGNALIDMYAKCGSIERAIEVFLGMRD--R----DVSTWS 339 (498)
Q Consensus 267 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~ 339 (498)
+...+......+...|++++|...|++.+...+..+. ...+..+..+|.+.|++++|...|+++.+ | ....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444445555555666666666666444443322211 33344455555555555555555554432 1 122344
Q ss_pred HHHHHHHh--------CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 041942 340 TLIGGLAF--------HGFAEESIAMFREMQRLKVRPTE-ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410 (498)
Q Consensus 340 ~l~~~~~~--------~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~ 410 (498)
.+..++.. .|++++|+..|+++++. .|+. .....+.......+... ...+.. ...|.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~--~~~~~l----------a~~~~ 159 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLA--RKQYEA----------ARLYE 159 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHH--HHHHHH----------HHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHH--HHHHHH----------HHHHH
Confidence 44555555 55555555555555542 2321 11111100000000000 000000 23455
Q ss_pred hhCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhC----------CCchHHHHHHHHhhhCCC
Q 041942 411 VHGDVELGRLANKRLLNMRKDES---GDYVLLSNIYASR----------GEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~ 464 (498)
..|++++|...|+++++..|+++ .++..++.+|... |++++|+..|+++.+...
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 78999999999999998888854 4788999999877 889999999999987543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.9e-09 Score=91.61 Aligned_cols=198 Identities=13% Similarity=0.026 Sum_probs=130.1
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc-hh
Q 041942 230 KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD---DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK-VL 305 (498)
Q Consensus 230 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 305 (498)
..+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..++...|++++|...|+..+...+..+. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3466778888999999999999999999998764 223 567888899999999999999999777776543332 45
Q ss_pred hHHHHHHHHHh--------cCCHHHHHHHHhcCCC--C-ChhHH-----------------HHHHHHHHhCCCHHHHHHH
Q 041942 306 HGNALIDMYAK--------CGSIERAIEVFLGMRD--R-DVSTW-----------------STLIGGLAFHGFAEESIAM 357 (498)
Q Consensus 306 ~~~~l~~~~~~--------~~~~~~A~~~~~~~~~--~-~~~~~-----------------~~l~~~~~~~~~~~~A~~~ 357 (498)
.+..+..++.. .|++++|...|+++.+ | +...+ ..+...|...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 56678888888 9999999999998763 3 23333 3345556666666666666
Q ss_pred HHHHHHCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCC
Q 041942 358 FREMQRLKVRPT----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDES 433 (498)
Q Consensus 358 ~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~ 433 (498)
|+++++. .|+ ...+..+..++...|+.+.+. ...|++++|...|+++++..|+++
T Consensus 171 ~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~-------------------~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 171 YEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRA-------------------RQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGG-------------------GHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhh-------------------cccchHHHHHHHHHHHHHHCCCCh
Confidence 6666652 232 223444444444331110000 123666777777777777777775
Q ss_pred c---hHHHHHHHHHhCCCc
Q 041942 434 G---DYVLLSNIYASRGEW 449 (498)
Q Consensus 434 ~---~~~~l~~~~~~~g~~ 449 (498)
. +...+..++...|++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3 333444444443333
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=4e-09 Score=106.94 Aligned_cols=164 Identities=10% Similarity=-0.003 Sum_probs=98.3
Q ss_pred hccCCchHHHHHHHHHHH-----h-hcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCC
Q 041942 279 ADLGDLEVGKKVHCTLLD-----M-TSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHG 349 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~-----~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 349 (498)
...|++++|...+++.+. . ...+.+...+..+...+...|++++|...|+++.+ .+...|..+..+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 556666666666644440 0 11123344555566666666777777766666553 24556666666667777
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHH
Q 041942 350 FAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRL 420 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~ 420 (498)
++++|++.|+++.+ +.| +...+..+..++.+.|++++ .+.++++.+ +.|+ ...|...|++++|..
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777666 334 35556666666667777776 666666665 3444 223336677777777
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhCCC
Q 041942 421 ANKRLLNMRKDESGDYVLLSNIYASRGE 448 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (498)
.|+++++++|.+..++..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777777777777777665444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-08 Score=100.05 Aligned_cols=153 Identities=9% Similarity=-0.032 Sum_probs=110.8
Q ss_pred cCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHH
Q 041942 281 LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAM 357 (498)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 357 (498)
.|++++|...+++.+.... .+...+..+...+...|++++|.+.|++..+ .+...|..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP--QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788899998866655432 3466778888899999999999999987654 3577888999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhh---CChHHHHHHHHHH
Q 041942 358 FREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVH---GDVELGRLANKRL 425 (498)
Q Consensus 358 ~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~---g~~~~a~~~~~~~ 425 (498)
+++..+. .| +...+..+..++.+.|++++|.+.+++..+ ..|+ ...|... |++++|...++++
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ---LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999884 45 467888888999999999999999999888 3454 3334477 9999999999999
Q ss_pred HccCCCCCchHHHHH
Q 041942 426 LNMRKDESGDYVLLS 440 (498)
Q Consensus 426 ~~~~~~~~~~~~~l~ 440 (498)
++.+|.+...+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999999888887776
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-09 Score=86.95 Aligned_cols=118 Identities=10% Similarity=-0.010 Sum_probs=97.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHh
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGV 411 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~ 411 (498)
|...+...|++++|+..+++... ..|+ ...+..+...|.+.|++++|++.+++.++ +.|+ ...|..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 45556677899999999999876 3454 55667788999999999999999999988 5666 445559
Q ss_pred hCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHH-HHHhhhCC
Q 041942 412 HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV-RKLMDDSD 463 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~ 463 (498)
.|++++|...|+++++++|+++.+|..++.+|.+.|++++|.+. +++..+..
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999887765 58887644
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-07 Score=80.74 Aligned_cols=124 Identities=9% Similarity=-0.041 Sum_probs=98.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHH
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVE 387 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 387 (498)
..+...+...|++++|...|++...++...|..+...|...|++++|+..+++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 4567778889999999999999988889999999999999999999999999998843 335778888999999999999
Q ss_pred HHHHHHHHhHHhcCCCC-------------C--------hhHHHhhCChHHHHHHHHHHHccCCCC
Q 041942 388 EGKKYFKLMRDEYNIEP-------------N--------IRHYGVHGDVELGRLANKRLLNMRKDE 432 (498)
Q Consensus 388 ~a~~~~~~~~~~~~~~p-------------~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~ 432 (498)
+|.+.++++.+..+-.+ . ...|...|++++|...+++++++.|++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999988322222 1 223336677777777777777776664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-08 Score=90.47 Aligned_cols=164 Identities=9% Similarity=-0.009 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHH-HH
Q 041942 265 RPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RDVSTWS-TL 341 (498)
Q Consensus 265 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~-~l 341 (498)
+.+...+..+...+...|++++|...|++.+...+ .+...+..+...+...|++++|...++++.. |+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN--QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 33445555666666677777777777755555443 2334455666667777777777777776653 3322222 12
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHH
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRL 420 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~ 420 (498)
...+...++.++|+..+++.... .| +...+..+...+...|++++|...+.++.+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~---------------------- 247 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLR---------------------- 247 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh----------------------
Confidence 22344556666666666666663 34 355566666666666666666666666555
Q ss_pred HHHHHHccCCCC--CchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 421 ANKRLLNMRKDE--SGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 421 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.+|++ ..++..++.+|...|+.++|...|++...
T Consensus 248 -------~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 248 -------XDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp -------HCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -------cccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 46666 77899999999999999999999988653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.85 E-value=7e-09 Score=105.15 Aligned_cols=144 Identities=10% Similarity=0.011 Sum_probs=127.3
Q ss_pred HhcCCHHHHHHHHhcCC-----------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhh
Q 041942 315 AKCGSIERAIEVFLGMR-----------DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSH 382 (498)
Q Consensus 315 ~~~~~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~ 382 (498)
...|++++|.+.+++.. ..+...+..+..+|...|++++|+..|+++.+ ..| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 67899999999998765 23567899999999999999999999999998 445 57788889999999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH
Q 041942 383 AGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 383 ~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
.|++++|.+.|+++.+ +.|+ ...|...|++++ ...|+++++++|++..+|..++.+|.+.|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988 4555 445559999999 999999999999999999999999999999999999
Q ss_pred HHHHhhhCCC
Q 041942 455 VRKLMDDSDI 464 (498)
Q Consensus 455 ~~~~m~~~~~ 464 (498)
.|++..+.+.
T Consensus 556 ~~~~al~l~P 565 (681)
T 2pzi_A 556 TLDEVPPTSR 565 (681)
T ss_dssp HHHTSCTTST
T ss_pred HHHhhcccCc
Confidence 9999876543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.6e-08 Score=78.84 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
.+..+...+...|+.++|...|++.
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 3444444444444444444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3e-08 Score=79.14 Aligned_cols=92 Identities=8% Similarity=0.033 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 041942 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSN 441 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 441 (498)
...+..+...+.+.|++++|...|+++.+ +.|+ ...|...|++++|...|+++++++|+++.+|..++.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 34555666677777777777777777766 3444 333447777888888888888889999999999999
Q ss_pred HHHhCCCchHHHHHHHHhhhCCC
Q 041942 442 IYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+|...|++++|+..|++..+...
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999987653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.7e-08 Score=76.15 Aligned_cols=102 Identities=7% Similarity=-0.014 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------h
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------I 406 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~ 406 (498)
..+......|.+.|++++|++.|++.++ +.| +...|..+..++.+.|++++|+..+++.++ +.|+ .
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg 88 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIR---LDSKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH---hhhhhhHHHHHHH
Confidence 3455666777777777777777777776 334 466666677777777777777777776666 3333 2
Q ss_pred hHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 041942 407 RHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442 (498)
Q Consensus 407 ~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 442 (498)
..|...|++++|...|+++++++|+++.++..|..+
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 233355566666666666666666666666555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.82 E-value=4.8e-07 Score=80.29 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 041942 204 SWNVMITGYAKQGEMEKANELFNEVPKR-----DVVSWNAMISGYVLCGMNKQALEMFEEMRS 261 (498)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 261 (498)
++..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3334444555555555555555544221 223444445555555555555555555543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=8e-08 Score=86.33 Aligned_cols=59 Identities=8% Similarity=-0.028 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC
Q 041942 140 RFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP 198 (498)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 198 (498)
...+..+...+...|++++|...|++... .+...+..+...+.+.|++++|...++++.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 33444444444444444444444443221 222334444444444444444444444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.3e-07 Score=82.63 Aligned_cols=152 Identities=8% Similarity=-0.026 Sum_probs=104.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC-----C----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 041942 310 LIDMYAKCGSIERAIEVFLGMRDR-----D----VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVR-PT----EITFVG 375 (498)
Q Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 375 (498)
.+..+...|++++|..++++..+. + ...+..+...+...+++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677778888888887765431 1 113334666666777888888888888773222 22 235777
Q ss_pred HHHHHhhcCCHHHHHHHHHHhHHhc----CCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCC------CchHH
Q 041942 376 VLVACSHAGKVEEGKKYFKLMRDEY----NIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDE------SGDYV 437 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~~~~~~----~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 437 (498)
+...|...|++++|...++++.+.. +..+. ...|.+.|++++|...+++++++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7788888888888888888877421 11111 333448888888888888888665432 46899
Q ss_pred HHHHHHHhCCC-chHHHHHHHHhhh
Q 041942 438 LLSNIYASRGE-WNRVEKVRKLMDD 461 (498)
Q Consensus 438 ~l~~~~~~~g~-~~~A~~~~~~m~~ 461 (498)
.++.+|...|+ +++|++.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999999988764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-07 Score=73.66 Aligned_cols=128 Identities=16% Similarity=0.264 Sum_probs=69.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHH
Q 041942 236 WNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYA 315 (498)
Q Consensus 236 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (498)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...+++.....
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------- 65 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------- 65 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-----------------
Confidence 4455555666666666666666655432 2234444445555555555555555553333221
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKL 395 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 395 (498)
..+...+..+...+...|++++|.++++++.+.. +.+...+..+...+.+.|++++|...+++
T Consensus 66 ----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 66 ----------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp ----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ----------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 1233344555556666666666666666665532 22355555666666666666666666666
Q ss_pred hHH
Q 041942 396 MRD 398 (498)
Q Consensus 396 ~~~ 398 (498)
+..
T Consensus 129 ~~~ 131 (136)
T 2fo7_A 129 ALE 131 (136)
T ss_dssp HHH
T ss_pred HHc
Confidence 655
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=7e-08 Score=82.13 Aligned_cols=118 Identities=8% Similarity=0.030 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAG 384 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g 384 (498)
.+..+|.+.|++++|...|++..+ .+...|..+..+|...|++++|+..|++.++ +.|+ ..++..+...+...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHh
Confidence 366666677777777777766542 2556677777777777777777777777776 3453 556666666655444
Q ss_pred C--HHHHHHHHHHhHHhcCCCCCh-------hHHHhhCChHHHHHHHHHHHccCCC
Q 041942 385 K--VEEGKKYFKLMRDEYNIEPNI-------RHYGVHGDVELGRLANKRLLNMRKD 431 (498)
Q Consensus 385 ~--~~~a~~~~~~~~~~~~~~p~~-------~~y~~~g~~~~a~~~~~~~~~~~~~ 431 (498)
+ ...+...++.... ..|.. ..+...|++++|...|+++++++|+
T Consensus 137 ~~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3 2334444433321 11111 1122566777777777777777775
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.3e-07 Score=80.04 Aligned_cols=175 Identities=11% Similarity=-0.045 Sum_probs=93.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC--CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-CCH-HHHHHHH
Q 041942 204 SWNVMITGYAKQGEMEKANELFNEVPK--RD----VVSWNAMISGYVLCGMNKQALEMFEEMRSVGER-PDD-VTMLSLL 275 (498)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~-~~~~~li 275 (498)
.+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+.... +.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 444555666777777777777776653 32 135566667777777777777777776654211 111 1233333
Q ss_pred HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhH---------------
Q 041942 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--RD-VST--------------- 337 (498)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~--------------- 337 (498)
.++...+.. .+ ..+..+...+...|+.++|...|+++.+ |+ ...
T Consensus 86 ~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 86 LTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp HHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 333321000 00 0000011111123444444444444432 11 111
Q ss_pred --HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 338 --WSTLIGGLAFHGFAEESIAMFREMQRLKVRPT----EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 338 --~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
...+...|...|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.+.++.+..
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 124556677888888888888888773 343 24566777788888888888888887766
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-07 Score=80.42 Aligned_cols=179 Identities=8% Similarity=-0.064 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC----CHHHHHHH
Q 041942 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG----SIERAIEV 326 (498)
Q Consensus 251 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~ 326 (498)
+|+..|++..+.| +...+..+...+...+++++|...|++.... + ++..+..|...|.. + ++++|...
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3445555555543 3444555555555556666666665333322 1 22333334444444 3 45555555
Q ss_pred HhcCCC-CChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 327 FLGMRD-RDVSTWSTLIGGLAF----HGFAEESIAMFREMQRLKVRPT---EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 327 ~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
|++..+ .++..+..|...|.. .+++++|+++|++..+.| |+ ...+..|...|....
T Consensus 76 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~-------------- 139 (212)
T 3rjv_A 76 AEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGV-------------- 139 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTS--------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCC--------------
Confidence 544432 234444444444444 445555555555544432 21 233333333333200
Q ss_pred hcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhC-C-----CchHHHHHHHHhhhCCCc
Q 041942 399 EYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR-G-----EWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 399 ~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~~ 465 (498)
| ..+++++|...|+++.+. |+++.++..|+..|... | ++++|+..|++..+.|..
T Consensus 140 --g---------~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 140 --H---------GPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp --S---------SSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred --C---------CCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 0 145667777777777666 66777889999998764 3 899999999999888764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-07 Score=80.22 Aligned_cols=131 Identities=8% Similarity=-0.032 Sum_probs=83.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC
Q 041942 239 MISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318 (498)
Q Consensus 239 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (498)
+..+|...|++++|...|++..+.. +-+...+..+..++...|++++|...|++.+...+ .+...+..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA--DNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHh
Confidence 7777778888888888888777653 33566777777777888888888888866665543 33455556666665443
Q ss_pred --CHHHHHHHHhcCCCCChh--HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041942 319 --SIERAIEVFLGMRDRDVS--TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFV 374 (498)
Q Consensus 319 --~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 374 (498)
....+...+..+..++.. .+.....++...|++++|+..|++.++ +.|+.....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 345566666666665543 233445556667778888888888777 557654433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.79 E-value=6.9e-07 Score=86.45 Aligned_cols=365 Identities=10% Similarity=-0.056 Sum_probs=207.7
Q ss_pred CC-ChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhccc-chhhHHHHHH
Q 041942 52 PG-AINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL-YRNMGFCVHG 129 (498)
Q Consensus 52 ~~-~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~ 129 (498)
.| +++.|+.+|++.. ..+-. |+++.+..+|++.... .|+...|..-+....+.+ ..+....+|+
T Consensus 7 ~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 7 MGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -----CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred cCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 45 3667777766653 22211 8999999999999874 579999998888777666 3467788888
Q ss_pred HHHHh-CC-CCChHHHHHHHHHHH----hcCChhHHHHhhccCCCCCcchHHHHHHHHH---hcCChHHHHHHHhcCCCC
Q 041942 130 KIVKY-GF-EFNRFVRNSLIYFHA----NCGDLNTASVLFDGDAKMDVVAWSSLTAGYA---RRGELSMARSLFDEMPVR 200 (498)
Q Consensus 130 ~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~ 200 (498)
..+.. |. ..+..+|...+..+. ..|+++.+.++|+.........+..+-..|. ...+...+..++.+.
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~--- 149 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT--- 149 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH---
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH---
Confidence 88764 43 346788888887754 3467888888988654421222222222221 111222222222211
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHhCC--C-----hHHHHHHHHHHHhCCCCCCHH
Q 041942 201 DLVSWNVMITGYAKQGEMEKANELFNEVPK----RDVVSWNAMISGYVLCG--M-----NKQALEMFEEMRSVGERPDDV 269 (498)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~m~~~g~~p~~~ 269 (498)
.+.+..|..+++.+.+ .+...|...+..-...+ - .+.+..+|++++... +.+..
T Consensus 150 --------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~ 214 (493)
T 2uy1_A 150 --------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEE 214 (493)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred --------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHH
Confidence 0111222222221111 13334554444432221 0 234566777777643 44566
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHH-HHHHHhcCC--C-------C---Chh
Q 041942 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER-AIEVFLGMR--D-------R---DVS 336 (498)
Q Consensus 270 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~--~-------~---~~~ 336 (498)
.|...+.-+.+.|+.+.|..+|+..+.. +.+...+.. |....+.++ ...+.+... . + ...
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL 287 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHH
Confidence 6766677777778888888888666655 223222221 222111111 111221110 0 1 124
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHhHHhcCCCCC-----hhHHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHA-GKVEEGKKYFKLMRDEYNIEPN-----IRHYG 410 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~-----~~~y~ 410 (498)
.|-..+....+.++.+.|..+|+++ .. ...+...|......-... ++.+.|..+|+...+..+-.|+ +....
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 5666677666778899999999998 32 123444454333222222 3699999999998885443333 11223
Q ss_pred hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
..|+.+.|+.+|+++ +.....|...+..-...|+.+.+..+++++.+
T Consensus 366 ~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 366 RIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778899999999997 33567788888888889999999998888874
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.6e-08 Score=87.46 Aligned_cols=146 Identities=8% Similarity=-0.045 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCC-------CC--ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---CC--CHH
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMR-------DR--DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV---RP--TEI 371 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p--~~~ 371 (498)
.++.+...|.+.|++++|...|++.. .+ -..++..+...|.. |++++|+..|++..+..- .+ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 34445555555555555555444322 11 12355566666666 777777777766654210 00 134
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----------hhHHHhhCChHHHHHHHHHHHccCCCCCc-----h
Q 041942 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----------IRHYGVHGDVELGRLANKRLLNMRKDESG-----D 435 (498)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~-----~ 435 (498)
++..+...+.+.|++++|...+++..+...-.++ ...|...|++++|...|++++ ++|.... .
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 5566666677777777777777766552111111 112224577777777777777 7765443 2
Q ss_pred HHHHHHHHHhCCCchHHHH
Q 041942 436 YVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~ 454 (498)
...++.++ ..|+.+.+.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 34445444 4566555444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.1e-08 Score=74.95 Aligned_cols=96 Identities=7% Similarity=0.045 Sum_probs=84.2
Q ss_pred CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchH
Q 041942 366 VRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDY 436 (498)
Q Consensus 366 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~ 436 (498)
+.|+ ...+......+.+.|++++|++.|++.++ +.|+ ...|...|++++|...++++++++|+++.+|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 4565 45677788899999999999999999988 4555 4455599999999999999999999999999
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 437 VLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
..++.+|...|++++|++.|++..+...
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999987543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.72 E-value=5.7e-08 Score=89.44 Aligned_cols=121 Identities=8% Similarity=-0.004 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT----------------EITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
..|..+...|...|++++|+..|++.++. .|+ ...|..+..++.+.|++++|...++++.+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 34555555666666666666666666552 233 25666666666667777777777766666
Q ss_pred cCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHH-HHHHHHhhh
Q 041942 400 YNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRV-EKVRKLMDD 461 (498)
Q Consensus 400 ~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 461 (498)
+.|+ ...|...|++++|...|+++++++|++..++..++.++...|++++| ..+|++|.+
T Consensus 225 --~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 --LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 33344677777777777888888999999999999999999999998 456666643
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-07 Score=75.99 Aligned_cols=122 Identities=7% Similarity=-0.016 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hh
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IR 407 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~ 407 (498)
..|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .|+ ..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 345556666666777777777777666632 223556666666666777777777777766662 333 23
Q ss_pred HHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHH--HHhCCCchHHHHHHHHhhh
Q 041942 408 HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNI--YASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 408 ~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 461 (498)
.|...|++++|...++++++..|.+..++..+..+ +...|++++|++.+++...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 33467777777777777777888888777555544 8888999999999987753
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.4e-07 Score=91.01 Aligned_cols=148 Identities=15% Similarity=0.014 Sum_probs=108.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHH
Q 041942 246 CGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIE 325 (498)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (498)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++.+.... .+...+..+...|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--GHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST--TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999887653 33577888888999999999999999966665442 456677888999999999999999
Q ss_pred HHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhc---CCHHHHHHHHHHhHH
Q 041942 326 VFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHA---GKVEEGKKYFKLMRD 398 (498)
Q Consensus 326 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 398 (498)
.+++..+ .+...+..+..+|...|++++|.+.+++..+. .| +...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9987653 36778999999999999999999999999884 45 467888888899999 999999999999888
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=6.4e-08 Score=77.25 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhC
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHG 413 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g 413 (498)
...+..+...+...|++++|+..|++... ..| +...|..+..++...|++++|...++++..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------- 83 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--------------- 83 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---------------
Confidence 34555566666666777777777766666 234 355555566666666666666666665555
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
++|+++.++..++.+|...|++++|+..|++..+
T Consensus 84 --------------l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 84 --------------MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp --------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.67 E-value=3.4e-06 Score=81.63 Aligned_cols=352 Identities=9% Similarity=-0.035 Sum_probs=205.6
Q ss_pred HHHHHHHHhhhhccCCChHHHHHhcccCC--CCChhhHHHHHHHHhccCC-hHHHHHHHHHHHhC-CCC-CCHhhHHHHH
Q 041942 38 SALRELIYSGSVVIPGAINYAHKMFVKIT--EPDTFMYNTIIRGSAQSQN-PLDAVFLYTQMEKC-SIK-PNKFTFSFVL 112 (498)
Q Consensus 38 ~~~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~-~~~-p~~~~~~~li 112 (498)
.+|...+. .+- .|+++.+..+|++.. .|++..|...+....+.+. .+....+|+..... |.. ++...|...+
T Consensus 16 ~vyer~l~-~~P--~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 16 AIMEHARR-LYM--SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHH-HHH--TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHH-HCC--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34444444 443 378999999999987 6899999999988877763 45677888887653 433 3667888888
Q ss_pred HHhh----cccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChH
Q 041942 113 KACT----RLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELS 188 (498)
Q Consensus 113 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (498)
..+. ..++.+.+..+|+..+......-...|......-.. .....+.+++.+. . +.+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~---------------~--~~y~ 154 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDT---------------L--PIFQ 154 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHH---------------H--HHHH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHH---------------h--HHHH
Confidence 7654 347888999999999983211112233333322111 1122222222110 0 1122
Q ss_pred HHHHHHhcCC----CCCcchHHHHHHHHHhcC--C-----hHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHH
Q 041942 189 MARSLFDEMP----VRDLVSWNVMITGYAKQG--E-----MEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALE 254 (498)
Q Consensus 189 ~A~~~~~~~~----~~~~~~~~~l~~~~~~~~--~-----~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 254 (498)
.|...++.+. ..+...|...+..-...+ - .+.+..+|+++.. .+...|...+..+.+.|+.++|..
T Consensus 155 ~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~ 234 (493)
T 2uy1_A 155 SSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKK 234 (493)
T ss_dssp HHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 2222222221 112234444444322211 0 2345566666553 356678888888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhh-----------cCCcchhhHHHHHHHHHhcCCHHHH
Q 041942 255 MFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMT-----------SGVAKVLHGNALIDMYAKCGSIERA 323 (498)
Q Consensus 255 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A 323 (498)
+|++.... +.+...+.. |......+.. ++...... .......+|...+....+.++.+.|
T Consensus 235 i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 235 VVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp HHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 99999877 333322221 2221111221 21111110 0011234566677777778889999
Q ss_pred HHHHhcCCCCC--hhHHHHHHHHHH-hCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 324 IEVFLGMRDRD--VSTWSTLIGGLA-FHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 324 ~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
..+|++...|. ...|...+..-. ..++.+.|..+|+...+.- |+ +..+...+....+.|+.+.|..+|+++.+
T Consensus 306 R~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k- 382 (493)
T 2uy1_A 306 RKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLEK- 382 (493)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-
T ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 99998884332 233432222222 2346999999999998742 43 45556667777889999999999998732
Q ss_pred cCCCCChhHHH-------hhCChHHHHHHHHHHHc
Q 041942 400 YNIEPNIRHYG-------VHGDVELGRLANKRLLN 427 (498)
Q Consensus 400 ~~~~p~~~~y~-------~~g~~~~a~~~~~~~~~ 427 (498)
....+. ..|+.+.+..++++..+
T Consensus 383 -----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 383 -----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222222 77999999999988884
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.65 E-value=7.1e-08 Score=86.34 Aligned_cols=186 Identities=11% Similarity=0.009 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHH
Q 041942 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGG 344 (498)
Q Consensus 268 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 344 (498)
...+..+...+...|++++|...|++.+...+ .+...+..+..+|.+.|++++|...+++..+ .+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34555556666666777777777655554432 3455666777777778888888887776654 356678888888
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--hhHHH---hhCChHHH
Q 041942 345 LAFHGFAEESIAMFREMQRLKVRPTE-ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--IRHYG---VHGDVELG 418 (498)
Q Consensus 345 ~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~y~---~~g~~~~a 418 (498)
|...|++++|...|++..+. .|+. ..+...+....+. ..+... ..... ....++ +..+. ..|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~-~~~~~~~~i~~~l~~l~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKRW-NSIEE-RRIHQESELHSYLTRLIAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHHH-HHHHH-TCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHHH-HHHHH-HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 88899999999998888763 3321 1111111111111 111111 11222 122222 22111 56888999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhC-CCchHHHHHHHHhhhC
Q 041942 419 RLANKRLLNMRKDESGDYVLLSNIYASR-GEWNRVEKVRKLMDDS 462 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 462 (498)
...++++++++|++......+...+.+. +++++|.++|+++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999888888888878777 7799999999998764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-06 Score=73.58 Aligned_cols=168 Identities=10% Similarity=0.032 Sum_probs=127.1
Q ss_pred HHHHHhhCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----CchHHHHHHHHHH
Q 041942 221 ANELFNEVPK-RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG----DLEVGKKVHCTLL 295 (498)
Q Consensus 221 A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~~~ 295 (498)
|.+.|++..+ .+..++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|...|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444432 467788888888888999999999999988876 45666677777777 6 8999999995554
Q ss_pred HhhcCCcchhhHHHHHHHHHh----cCCHHHHHHHHhcCCCCC-----hhHHHHHHHHHHh----CCCHHHHHHHHHHHH
Q 041942 296 DMTSGVAKVLHGNALIDMYAK----CGSIERAIEVFLGMRDRD-----VSTWSTLIGGLAF----HGFAEESIAMFREMQ 362 (498)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~A~~~~~~m~ 362 (498)
. .+ ++..+..|...|.. .+++++|...|++..+.+ +..+..|...|.. .+++++|+.+|++..
T Consensus 81 ~-~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E-AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H-TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H-CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 3 32 44556677777776 789999999998877543 6888899999988 889999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHhhc-C-----CHHHHHHHHHHhHH
Q 041942 363 RLKVRPTEITFVGVLVACSHA-G-----KVEEGKKYFKLMRD 398 (498)
Q Consensus 363 ~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~ 398 (498)
+. ..+...+..|...|... | ++++|..++++..+
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 85 23445666666666543 3 88999999988877
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.6e-06 Score=73.65 Aligned_cols=206 Identities=10% Similarity=0.024 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--CchHHHHHHHHHHHhhcCCcchhhHHHHHHHH----Hhc---CC
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLG--DLEVGKKVHCTLLDMTSGVAKVLHGNALIDMY----AKC---GS 319 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 319 (498)
.++|+.+++.++... +-+...|+.--..+...+ +++++...++..+...+-. ..+|+.-...+ ... ++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~--y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN--YQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC--CHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc--HHHHHHHHHHHHHHHHhccccCC
Confidence 356666666666542 223334454445555555 6666666665555444322 22222222222 233 56
Q ss_pred HHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC------HHH
Q 041942 320 IERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAE--ESIAMFREMQRLKVRPTEITFVGVLVACSHAGK------VEE 388 (498)
Q Consensus 320 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 388 (498)
+++++.+++.+.+ +|..+|+.-.-.+...|.++ ++++.++++++.+ .-|...|+.-...+.+.|. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 6777777766653 35566666666666666666 7777777777743 2345566655555555555 677
Q ss_pred HHHHHHHhHHhcCCCCC-hhHH-------HhhCC-hHHHHHHHHHHHccC---CCCCchHHHHHHHHHhCCCchHHHHHH
Q 041942 389 GKKYFKLMRDEYNIEPN-IRHY-------GVHGD-VELGRLANKRLLNMR---KDESGDYVLLSNIYASRGEWNRVEKVR 456 (498)
Q Consensus 389 a~~~~~~~~~~~~~~p~-~~~y-------~~~g~-~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (498)
+.+.++.++. ..|+ ...+ .+.|+ .+......+++.+++ |.++.++..++.+|.+.|+.++|++++
T Consensus 205 El~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 205 ELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 7777777666 3444 1111 14444 344555666666665 778889999999999999999999999
Q ss_pred HHhhh
Q 041942 457 KLMDD 461 (498)
Q Consensus 457 ~~m~~ 461 (498)
+++.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-07 Score=83.99 Aligned_cols=188 Identities=9% Similarity=0.033 Sum_probs=139.2
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHH
Q 041942 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACAD-LGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERA 323 (498)
Q Consensus 245 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (498)
..|++++|.+++++..+... .. +.. .++++.|...|.. ....|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~----------------a~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAK----------------AAVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHH----------------HHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHH----------------HHHHHHHcCCHHHH
Confidence 35778899999988765321 11 122 5778888887732 34567778888888
Q ss_pred HHHHhcCCC-----CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhhcCCHHHH
Q 041942 324 IEVFLGMRD-----RD----VSTWSTLIGGLAFHGFAEESIAMFREMQRLK---VRPT--EITFVGVLVACSHAGKVEEG 389 (498)
Q Consensus 324 ~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a 389 (498)
...|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 888776542 11 3578889999999999999999999876521 1122 4577788888988 999999
Q ss_pred HHHHHHhHHhcCCCCC-----------hhHHHhhCChHHHHHHHHHHHccCCCCC------chHHHHHHHHHhCCCchHH
Q 041942 390 KKYFKLMRDEYNIEPN-----------IRHYGVHGDVELGRLANKRLLNMRKDES------GDYVLLSNIYASRGEWNRV 452 (498)
Q Consensus 390 ~~~~~~~~~~~~~~p~-----------~~~y~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A 452 (498)
...+++..+...-..+ ...|...|++++|...|++++++.|.+. .++..++.++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998762211111 3345589999999999999998876554 3677888889999999999
Q ss_pred HHHHHHhh
Q 041942 453 EKVRKLMD 460 (498)
Q Consensus 453 ~~~~~~m~ 460 (498)
+..|++..
T Consensus 215 ~~~~~~al 222 (307)
T 2ifu_A 215 QKCVRESY 222 (307)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999987
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.5e-07 Score=70.47 Aligned_cols=110 Identities=7% Similarity=-0.041 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-------
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN------- 405 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------- 405 (498)
+...|..+...+...|++++|...+++..+. .| +...+..+...+...|++++|...++++.+ ..|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~ 89 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ---LEPTFIKGYTR 89 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCchHHHHH
Confidence 3456667777777777777777777777763 33 466677777777777777777777777766 2333
Q ss_pred -hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCC
Q 041942 406 -IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448 (498)
Q Consensus 406 -~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (498)
...|...|++++|...++++++.+|.+..++..++.++...|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 3334466777777777777777788888888888888776653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=4.9e-08 Score=82.38 Aligned_cols=146 Identities=8% Similarity=-0.105 Sum_probs=95.4
Q ss_pred HHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-H----------------HHH
Q 041942 314 YAKCGSIERAIEVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-E----------------ITF 373 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~----------------~~~ 373 (498)
....|+++++.+.++.-.+. ....+..+...+...|++++|+..|++..+. .|+ . ..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHH
Confidence 33445555555555433221 3445667777888888888888888888873 232 2 677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 041942 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445 (498)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (498)
..+..++.+.|++++|...++++.+ +.|+ ...|...|++++|...|+++++++|+++.++..+..++..
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLK---IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 7777888888999999988888877 3454 3444588899999999999999999999999999999999
Q ss_pred CCCchHHH-HHHHHhhhCCC
Q 041942 446 RGEWNRVE-KVRKLMDDSDI 464 (498)
Q Consensus 446 ~g~~~~A~-~~~~~m~~~~~ 464 (498)
.|+.+++. ..+..|...|.
T Consensus 169 ~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 98888877 66777655543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=5e-07 Score=76.24 Aligned_cols=158 Identities=11% Similarity=0.029 Sum_probs=87.1
Q ss_pred hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC------C---ChhHHHHHHHHHHhCC
Q 041942 279 ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD------R---DVSTWSTLIGGLAFHG 349 (498)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~---~~~~~~~l~~~~~~~~ 349 (498)
...|++++|.+.+ +.... ........+..+...+...|++++|...+++..+ . ...++..+...|...|
T Consensus 3 ~~~g~~~~A~~~~-~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQA-QALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHH-HHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHH-HHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3466777777744 22222 1123445556666666677777777666655432 1 2345666666666777
Q ss_pred CHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHH
Q 041942 350 FAEESIAMFREMQRL----KVRP--TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANK 423 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~ 423 (498)
++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+...-.++..
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------- 144 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV---------------- 144 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----------------
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH----------------
Confidence 777777766665542 1011 123445555566666666666666666554100000000
Q ss_pred HHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 424 RLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
....++..++.++...|++++|...+++..+
T Consensus 145 -------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 -------AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp -------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 0123467888889999999999888887764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=5.7e-07 Score=69.54 Aligned_cols=111 Identities=12% Similarity=-0.037 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------h
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------I 406 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~ 406 (498)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+. .|+ .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHH
Confidence 3455566666666777777777777766632 224556666666667777777777777776662 333 2
Q ss_pred hHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCc
Q 041942 407 RHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEW 449 (498)
Q Consensus 407 ~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 449 (498)
..|...|++++|...++++++..|+++.++..++.++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 3344667777777777777778888888899999988888775
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=8.2e-07 Score=75.65 Aligned_cols=121 Identities=13% Similarity=-0.045 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChH
Q 041942 143 RNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEME 219 (498)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 219 (498)
+..+...+...|++++|...|++...++...|..+...+.+.|++++|+..|++.. +.+...|..+..++...|+++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 44556667777788888877777776677777777777777888888877777766 445566777777777777877
Q ss_pred HHHHHHhhCCC---CCh----------------hhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 041942 220 KANELFNEVPK---RDV----------------VSWNAMISGYVLCGMNKQALEMFEEMRSVG 263 (498)
Q Consensus 220 ~A~~~~~~~~~---~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 263 (498)
+|.+.|++..+ .+. ..+..+..+|...|++++|...|++..+..
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 77777776543 122 567777778888888888888888877653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-06 Score=76.92 Aligned_cols=192 Identities=9% Similarity=-0.053 Sum_probs=120.4
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHhccCCchHHHHHHHHHHHhh----cCCcc----------
Q 041942 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSL-------LTACADLGDLEVGKKVHCTLLDMT----SGVAK---------- 303 (498)
Q Consensus 245 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---------- 303 (498)
..++...|.+.|.+..+.. +-....|..+ ...+...++..++...+...+... +...+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777553 2234445444 233333333444443332222200 00001
Q ss_pred -----hhhHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHH
Q 041942 304 -----VLHGNALIDMYAKCGSIERAIEVFLGMRD--RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT--EITFV 374 (498)
Q Consensus 304 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~ 374 (498)
....-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 12234566778889999999999998874 433366666778889999999999998665521 121 23677
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC---------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 375 GVLVACSHAGKVEEGKKYFKLMRDEYNIEPN---------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
.+..++.+.|++++|+..|++... ....|. ...+.+.|+.++|...|+++...+|+ ..++..|.
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 778899999999999999999876 333254 11222777888888888888877777 55555553
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.1e-07 Score=76.76 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=30.9
Q ss_pred hhCCh--HHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 411 VHGDV--ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 411 ~~g~~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
..|++ ++|...++++++.+|.++.++..++.+|...|++++|+..++++.+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 34444 555555555555556666666666666666666666666666665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=9.3e-07 Score=67.62 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hh
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IR 407 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~ 407 (498)
..|..+...+...|++++|.++++++.+.. +.+..++..+...+...|++++|..+++++.+. .|+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~ 85 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHH
Confidence 345555556666666666666666665532 123445555555666666666666666655552 222 22
Q ss_pred HHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhC
Q 041942 408 HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASR 446 (498)
Q Consensus 408 ~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 446 (498)
.|...|++++|...++++++.+|.++.++..++.++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 233555555555566666666677777777776666544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.5e-06 Score=76.80 Aligned_cols=161 Identities=13% Similarity=0.012 Sum_probs=89.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc----hhhHH
Q 041942 238 AMISGYVLCGMNKQALEMFEEMRSVGERPDD-----VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK----VLHGN 308 (498)
Q Consensus 238 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 308 (498)
..+..+...|++++|...+.+..+....... ..+..+...+...|++++|...+++.+.......+ ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3455555666666666666655543211110 11222333445556666666666444432211111 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC-----CCC-----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMR-----DRD-----VSTWSTLIGGLAFHGFAEESIAMFREMQRL----KVRPT-EITF 373 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~ 373 (498)
.+...|...|++++|...|++.. .++ ..+|..+...|...|++++|+..+++..+. +.... ..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 56666666666666666665543 111 246677777788888888888888776542 11111 4566
Q ss_pred HHHHHHHhhcCCHHHH-HHHHHHhHH
Q 041942 374 VGVLVACSHAGKVEEG-KKYFKLMRD 398 (498)
Q Consensus 374 ~~l~~~~~~~g~~~~a-~~~~~~~~~ 398 (498)
..+...+.+.|++++| ...+++...
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7777778888888888 666766654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.51 E-value=7.5e-07 Score=70.43 Aligned_cols=96 Identities=13% Similarity=0.026 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhC
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHG 413 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g 413 (498)
...+..+...+...|++++|+..|++.... .| +...|..+..++.+.|++++|...+++...
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------- 80 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGAL--------------- 80 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---------------
Confidence 345666677777788888888888887773 34 456666667777777777777777776666
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
++|+++.++..++.+|...|++++|+..|++..+
T Consensus 81 --------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 81 --------------MDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp --------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445555555555555555555555554443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.50 E-value=3.4e-06 Score=75.88 Aligned_cols=207 Identities=8% Similarity=-0.011 Sum_probs=117.2
Q ss_pred HHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhh---HHHHHHHHhccCChHHHHHHHHHHHhC
Q 041942 23 QIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFM---YNTIIRGSAQSQNPLDAVFLYTQMEKC 99 (498)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~A~~~~~~m~~~ 99 (498)
..+.........|+..+...+.. .+.. .++. ++..-...+... +...+..+...|++++|.+++++..+.
T Consensus 32 ~~~s~~e~g~~~~~~~~l~~i~~-~l~~---~~~~---~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 32 SEVSRIESGAVYPSMDILQGIAA-KLQI---PIIH---FYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHH-HHTC---CTHH---HHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCCHHHHHHHHH-HhCc---CHHH---HhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 34445554456788888888777 5554 1222 222222222333 334467788899999999999998764
Q ss_pred C-CCCCHh----hHHHHHHHhhcccchhhHHHHHHHHHHhCCC-CC----hHHHHHHHHHHHhcCChhHHHHhhccCCCC
Q 041942 100 S-IKPNKF----TFSFVLKACTRLLYRNMGFCVHGKIVKYGFE-FN----RFVRNSLIYFHANCGDLNTASVLFDGDAKM 169 (498)
Q Consensus 100 ~-~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 169 (498)
. ..|+.. .+..+...+...++++.|...+++..+.... ++ ..+++.+..+|...|++++|...|++..+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~- 183 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK- 183 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 2 122221 2334555566778899999999998874322 22 22577777788888888887777654331
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--------C-ChhhHH
Q 041942 170 DVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK--------R-DVVSWN 237 (498)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~-~~~~~~ 237 (498)
.++... +....++..+..+|.+.|++++|...+++..+ . -..+|.
T Consensus 184 -----------------------~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 184 -----------------------QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp -----------------------HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred -----------------------HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 011000 00012334444444444454444444444331 0 134566
Q ss_pred HHHHHHHhCCC-hHHHHHHHHHHH
Q 041942 238 AMISGYVLCGM-NKQALEMFEEMR 260 (498)
Q Consensus 238 ~l~~~~~~~g~-~~~a~~~~~~m~ 260 (498)
.+..+|...|+ +++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66777777774 477777766654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-06 Score=69.15 Aligned_cols=102 Identities=13% Similarity=-0.019 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCC
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-------------EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIE 403 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 403 (498)
.+......+...|++++|+..|++.++ +.|+ ...|..+..++.+.|++++|+..+++.++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 344566677788899999999998887 4454 22777788888888888888888877665
Q ss_pred CChhHHHhhCChHHHHHHHHHHHccCCCCCchH----HHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 404 PNIRHYGVHGDVELGRLANKRLLNMRKDESGDY----VLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 404 p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
+|++..+++|++..+| ...+.++...|++++|+..|++..+.
T Consensus 86 -----------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 86 -----------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp -----------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4777777799998899 99999999999999999999998763
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.49 E-value=5.6e-07 Score=71.73 Aligned_cols=90 Identities=11% Similarity=-0.026 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh
Q 041942 307 GNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSH 382 (498)
Q Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 382 (498)
+..+...+.+.|++++|...|+++.. | +...|..+..+|...|++++|+..|+++.+ +.|+ ...|..+..++.+
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHH
Confidence 34444455555555555555554432 2 445555555555555555556555555555 3332 4455555555555
Q ss_pred cCCHHHHHHHHHHhHH
Q 041942 383 AGKVEEGKKYFKLMRD 398 (498)
Q Consensus 383 ~g~~~~a~~~~~~~~~ 398 (498)
.|++++|...|++..+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555555
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-06 Score=77.98 Aligned_cols=205 Identities=7% Similarity=-0.036 Sum_probs=102.5
Q ss_pred HHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC
Q 041942 25 QALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPN 104 (498)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~ 104 (498)
...+......|+..+...+.. .+.. .++................+...+..+...|++++|.+.+++..+.... .
T Consensus 34 is~~e~g~~~~~~~~l~~l~~-~l~~---~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~ 108 (293)
T 2qfc_A 34 VSRIESGAVYPSMDILQGIAA-KLQI---PIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-H 108 (293)
T ss_dssp HHHHHTSSSCCCHHHHHHHTT-TSCC---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-C
T ss_pred HHHHHCCCCCCCHHHHHHHHH-HhCc---CHHHHhccccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-C
Confidence 334443344566666555554 3333 1222111111111122334555667777888888888888777664311 1
Q ss_pred H------hhHHHHHHHhhcccchhhHHHHHHHHHHhCCC---CC--hHHHHHHHHHHHhcCChhHHHHhhccCCCCCcch
Q 041942 105 K------FTFSFVLKACTRLLYRNMGFCVHGKIVKYGFE---FN--RFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVA 173 (498)
Q Consensus 105 ~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 173 (498)
. ..+..+...+...|+++.|...+++..+.... +. ..+++.+...|...|++++|...|++..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~----- 183 (293)
T 2qfc_A 109 PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK----- 183 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Confidence 1 11223334455666777777777776643211 11 23555566666666666666655543320
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCC-----cchHHHHHHHHHhcCChHHHHHHHhhCCC-------C--ChhhHHHH
Q 041942 174 WSSLTAGYARRGELSMARSLFDEMPVRD-----LVSWNVMITGYAKQGEMEKANELFNEVPK-------R--DVVSWNAM 239 (498)
Q Consensus 174 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l 239 (498)
+++. .++ ..++..+..+|.+.|++++|...+++..+ . -..+|..+
T Consensus 184 -------------------~~~~--~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~l 242 (293)
T 2qfc_A 184 -------------------QLEA--LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR 242 (293)
T ss_dssp -------------------HHHH--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHH
T ss_pred -------------------HHHh--cCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 0000 111 12344444455555555555555544331 0 13456667
Q ss_pred HHHHHhCCChHHH-HHHHHHHH
Q 041942 240 ISGYVLCGMNKQA-LEMFEEMR 260 (498)
Q Consensus 240 ~~~~~~~g~~~~a-~~~~~~m~ 260 (498)
...|...|++++| ...+++..
T Consensus 243 g~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 243 GECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHH
Confidence 7777777777777 56566554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-06 Score=73.49 Aligned_cols=123 Identities=12% Similarity=-0.003 Sum_probs=76.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC-C----hhhHHHHHHHHHhCCC
Q 041942 176 SLTAGYARRGELSMARSLFDEMP--VRDLVSWNVMITGYAKQGEMEKANELFNEVPKR-D----VVSWNAMISGYVLCGM 248 (498)
Q Consensus 176 ~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~----~~~~~~l~~~~~~~g~ 248 (498)
.+...+...|++++|.++|+.+. .|+......+...+.+.+++++|+..|+..... + ...+..+..++...|+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence 34556667777777777777776 333224445555677777777777777755542 1 2356666777777777
Q ss_pred hHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCchHHHHHHHHHHHhh
Q 041942 249 NKQALEMFEEMRSVGERPD--DVTMLSLLTACADLGDLEVGKKVHCTLLDMT 298 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 298 (498)
+++|+..|++.......|. .........++.+.|+.++|...|++.....
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7777777777764332143 2344555566677777777777775554433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.9e-07 Score=68.28 Aligned_cols=96 Identities=7% Similarity=-0.045 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCC
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGD 414 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~ 414 (498)
..|..+...+...|++++|+..|++.++. .| +...|..+..++.+.|++++|...+++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---------------- 66 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE---------------- 66 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------
Confidence 45666777777888888888888887773 34 466666677777777777777666666655
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
++|+++.+|..++.++...|++++|+..|++..+.
T Consensus 67 -------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 67 -------------KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp -------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 45556666666666666666666666666666543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.6e-06 Score=63.63 Aligned_cols=102 Identities=12% Similarity=0.011 Sum_probs=71.5
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhC
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHG 413 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g 413 (498)
+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--------------- 68 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN--------------- 68 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------------
Confidence 34556666777777777777777777777632 22355555556666666666666555555544
Q ss_pred ChHHHHHHHHHHHccCCC--CCchHHHHHHHHHhC-CCchHHHHHHHHhhhCCCc
Q 041942 414 DVELGRLANKRLLNMRKD--ESGDYVLLSNIYASR-GEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 465 (498)
..|. +..++..++.++... |++++|++.+++..+....
T Consensus 69 --------------~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 69 --------------VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp --------------TSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred --------------hCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 5666 778899999999999 9999999999999876553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-06 Score=69.27 Aligned_cols=94 Identities=14% Similarity=0.016 Sum_probs=81.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLV 378 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~ 378 (498)
+...+..+...+...|++++|...|+... ..+...|..+..+|...|++++|+..|+++.. +.| +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHH
Confidence 45566778889999999999999999875 34788899999999999999999999999998 445 4678888889
Q ss_pred HHhhcCCHHHHHHHHHHhHH
Q 041942 379 ACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~ 398 (498)
++...|++++|...+++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988877
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=5.6e-07 Score=68.88 Aligned_cols=95 Identities=9% Similarity=-0.112 Sum_probs=63.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChH
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVE 416 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~ 416 (498)
+..+...+.+.|++++|+..+++.++ ..| +...+..+..++...|++++|+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~------------------------- 72 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAII------------------------- 72 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHH-------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHH-------------------------
Confidence 44455556666666666666666666 334 34455555555555555555554
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.|+++++++|+++.++..++.+|...|++++|+..+++..+..
T Consensus 73 ----~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 73 ----ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp ----HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ----HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4555555688888999999999999999999999999987654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=84.37 Aligned_cols=122 Identities=7% Similarity=-0.003 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT----------------EITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
..|..+...|.+.|++++|+..|++.++ +.|+ ...|..+..++.+.|++++|+..++++.+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 345 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG- 345 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 4556666677777777777777777766 2333 36677777777888888888888888777
Q ss_pred cCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH-HHHHhhhC
Q 041942 400 YNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK-VRKLMDDS 462 (498)
Q Consensus 400 ~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~~ 462 (498)
+.|+ ...|...|++++|...|+++++++|++..++..++.++...|++++|.. .+++|..+
T Consensus 346 --~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 346 --LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp --HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred --cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3454 3344478888888888888999999999999999999999999988774 56666544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.4e-06 Score=66.12 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=70.2
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN---- 405 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---- 405 (498)
+...+..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|...+++..+. .|+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHH
Confidence 456677777778888888888888888877 4465 456666677777777777777777777662 332
Q ss_pred ----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 406 ----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 406 ----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
...|...|++++|...++++++++|++..++..+..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 22333666666666666666666676666665555543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-06 Score=66.13 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=80.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVA 379 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~ 379 (498)
...+..+...+.+.|++++|...|++..+ .+...|..+..+|...|++++|+..+++.++ +.|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 44567788889999999999999987763 4678999999999999999999999999998 4464 7788888899
Q ss_pred HhhcCCHHHHHHHHHHhHH
Q 041942 380 CSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 380 ~~~~g~~~~a~~~~~~~~~ 398 (498)
+...|++++|...+++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 9999999999999988877
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.8e-06 Score=68.92 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-------- 405 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------- 405 (498)
...|..+...+...|++++|+..|++.++ +.| +...|..+..++.+.|++++|...+++..+ +.|+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 85 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATV---VDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 44566666677777777777777777766 334 456666667777777777777777777766 3444
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSN 441 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 441 (498)
...|...|++++|...|+++++++|++...|...+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 333347777777777778888788888876655443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-05 Score=71.39 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 041942 334 DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 369 (498)
+...+..++.+|.+.|+.++|+++++.+.+. +.|-
T Consensus 257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpi 291 (306)
T 3dra_A 257 SSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPI 291 (306)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGG
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChH
Confidence 4556666777777777778888888777653 3454
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=4.9e-06 Score=62.77 Aligned_cols=100 Identities=11% Similarity=0.069 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------h
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------I 406 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~ 406 (498)
..+..+...+...|++++|...+++.... .| +...+..+...+...|++++|...+++..+. .|+ .
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a 79 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 45556666777777777777777777663 33 4556666666666667776666666666552 222 1
Q ss_pred hHHHhhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 407 RHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 407 ~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
..|...|++++|...++++++.+|+++.++..++
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2222444444444444444445555544444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=68.27 Aligned_cols=94 Identities=13% Similarity=0.019 Sum_probs=80.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 041942 303 KVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLV 378 (498)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~ 378 (498)
+...+..+...+.+.|++++|...|+.... .+...|..+..+|...|++++|+..|++.... .| +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHH
Confidence 345556678889999999999999998753 47788999999999999999999999999984 45 4677888889
Q ss_pred HHhhcCCHHHHHHHHHHhHH
Q 041942 379 ACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 379 ~~~~~g~~~~a~~~~~~~~~ 398 (498)
++...|++++|.+.+++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988877
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.8e-06 Score=71.54 Aligned_cols=82 Identities=9% Similarity=0.084 Sum_probs=41.0
Q ss_pred hcCChHHHHH---HHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHhccCCch
Q 041942 214 KQGEMEKANE---LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRS----VGERP-DDVTMLSLLTACADLGDLE 285 (498)
Q Consensus 214 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~~~~~ 285 (498)
..|++++|.+ .+..-......++..+...+...|++++|...+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4556666666 44332222344566666666666666666666666543 11111 2234444555555666666
Q ss_pred HHHHHHHHHH
Q 041942 286 VGKKVHCTLL 295 (498)
Q Consensus 286 ~a~~~~~~~~ 295 (498)
+|...+++.+
T Consensus 84 ~A~~~~~~al 93 (203)
T 3gw4_A 84 AARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665554433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-06 Score=77.65 Aligned_cols=189 Identities=7% Similarity=-0.054 Sum_probs=103.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 041942 203 VSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACA 279 (498)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 279 (498)
..+..+...+.+.|++++|...|++..+ .+...|..+..+|...|++++|...+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4455555666666666666666665542 255566667777777777777777777766553 334556666677777
Q ss_pred ccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Q 041942 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (498)
..|++++|...|++.+...+..+. .+...+....+..+.......-......+......+.. + ..|++++|++.++
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~~ 159 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRL--NFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR-L-IAAERERELEECQ 159 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTC--CCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTTS
T ss_pred HcCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHHH
Confidence 777777777777555543321111 11111111111111111111222222233333333322 2 2588888988888
Q ss_pred HHHHCCCCCCHHHHH-HHHHHHhhc-CCHHHHHHHHHHhHH
Q 041942 360 EMQRLKVRPTEITFV-GVLVACSHA-GKVEEGKKYFKLMRD 398 (498)
Q Consensus 360 ~m~~~~~~p~~~~~~-~l~~~~~~~-g~~~~a~~~~~~~~~ 398 (498)
+..+ ..|+..... .+...+.+. +.+++|.++|.++.+
T Consensus 160 ~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 160 RNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp GGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8877 456644333 333333443 668888888888765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-06 Score=70.48 Aligned_cols=93 Identities=9% Similarity=0.008 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
+...+..+...+.+.|++++|...|++..+ +.|+ ...|...|++++|...++++++++|+++.+|..++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 356778888899999999999999999988 4554 44455999999999999999999999999999999
Q ss_pred HHHHhCCCchHHHHHHHHhhhCCC
Q 041942 441 NIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
.+|...|++++|+..|++..+...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC
Confidence 999999999999999999987543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.5e-06 Score=66.66 Aligned_cols=99 Identities=6% Similarity=-0.021 Sum_probs=66.3
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHh
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGV 411 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~ 411 (498)
.+...|..+...+...|++++|+..|++.... .| +...+..+..++...|++++|...+++..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------- 71 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE------------- 71 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------
Confidence 35566777777777777777777777777763 34 355666666666676776666666666555
Q ss_pred hCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 412 HGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
++|+++.+|..++.+|...|++++|+..|++..+.
T Consensus 72 ----------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 72 ----------------LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45566666667777777777777777766666543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-06 Score=67.27 Aligned_cols=102 Identities=9% Similarity=-0.006 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChh-HHHhhC
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR-HYGVHG 413 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~y~~~g 413 (498)
..+..+...+.+.|++++|++.|++.++ +.|+ ...|..+..+|.+.|++++|++.+++.++. .|+.. .|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~---- 79 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADY---- 79 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCH----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---Ccccchhh----
Confidence 4677788889999999999999999988 4564 677888888888888888888888887761 11100 00
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
+.-..+|..++.++...|++++|++.|++..+.
T Consensus 80 ----------------~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 80 ----------------KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp ----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 000135677778888888888888888887653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.33 E-value=7e-06 Score=66.42 Aligned_cols=122 Identities=7% Similarity=-0.026 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK 316 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (498)
..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++.+... +.+...+..+...+..
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHH
Confidence 333444444444444444444443322 1233334444444444444444444443333222 1223333344444444
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHH--HHHHHHHhCCCHHHHHHHHHHH
Q 041942 317 CGSIERAIEVFLGMRD---RDVSTWS--TLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 317 ~~~~~~A~~~~~~~~~---~~~~~~~--~l~~~~~~~~~~~~A~~~~~~m 361 (498)
.|++++|...|++..+ .+...+. .++..+...|++++|++.+.+.
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 4444444444444331 1222222 1222244455555555555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=4.7e-06 Score=62.84 Aligned_cols=95 Identities=6% Similarity=0.016 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 041942 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA 444 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (498)
...+..+...+...|++++|...+++.....+-.+. ...|...|++++|...++++++.+|+++.++..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456777888899999999999999999883222222 344558999999999999999999999999999999999
Q ss_pred hCCCchHHHHHHHHhhhCCC
Q 041942 445 SRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~ 464 (498)
..|++++|...+++..+.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 99999999999999987654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.31 E-value=1e-06 Score=81.05 Aligned_cols=122 Identities=8% Similarity=0.016 Sum_probs=54.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI------------------TFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~------------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
+..+...+...|++++|+..|++.+. +.|+.. .|..+..++.+.|++++|...+++..+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 258 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT- 258 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 44455555556666666666666555 334322 566677777777777777777777766
Q ss_pred cCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHH-hCCCchHHHHHHHHhhhCCC
Q 041942 400 YNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYA-SRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 400 ~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~ 464 (498)
+.|+ ...|...|++++|...|+++++++|+++.++..+..+.. ..+..+++..+|++|.....
T Consensus 259 --~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 259 --EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp --HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3444 333447778888888888888888888888888887744 44667788888888866543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-05 Score=76.83 Aligned_cols=192 Identities=9% Similarity=-0.030 Sum_probs=92.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc
Q 041942 240 ISGYVLCGMNKQALEMFEEMRSVGERPDD----------------VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303 (498)
Q Consensus 240 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~----------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 303 (498)
...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|...+.......+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45566778888888888888765422211 12444555555666666666555443333222222
Q ss_pred hh----hHHHHHHHHHhcCCHHHHHHHHhcCCC--------C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC--
Q 041942 304 VL----HGNALIDMYAKCGSIERAIEVFLGMRD--------R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRL--KV-- 366 (498)
Q Consensus 304 ~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~-- 366 (498)
.. +.+.+...+...|+.++|..++..... + -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 111122222234445555544443221 0 1224444555555555555555555544321 11
Q ss_pred CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCC---CC----CchHHH
Q 041942 367 RPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRK---DE----SGDYVL 438 (498)
Q Consensus 367 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~---~~----~~~~~~ 438 (498)
++. ...+..++..|...|++++|..++++ ++...+ .+ ...+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-----------------------------al~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTA-----------------------------ARTAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------------HHHHHHHSCCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHH-----------------------------HHHHhhcCCCchHHHHHHHHH
Confidence 111 22344444455555555555555544 443221 11 134556
Q ss_pred HHHHHHhCCCchHHHHHHHHhh
Q 041942 439 LSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
++..+...|++++|...|.+..
T Consensus 222 ~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 222 SGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 6666677777777777666654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.6e-06 Score=67.28 Aligned_cols=115 Identities=7% Similarity=0.012 Sum_probs=65.1
Q ss_pred ccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHH-HHhCCCH--HH
Q 041942 280 DLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGG-LAFHGFA--EE 353 (498)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~-~~~~~~~--~~ 353 (498)
..|++++|...++..+...+ .+...+..+...|...|++++|...|++..+ .+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 44556666666644444332 2344555566666666666666666655442 245555666666 5566766 77
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 354 SIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 354 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
|...++++.+. .|+ ...+..+...+...|++++|...++++.+
T Consensus 100 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777777663 343 55566666666666777666666666655
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.6e-06 Score=63.31 Aligned_cols=116 Identities=11% Similarity=-0.072 Sum_probs=82.4
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHH
Q 041942 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147 (498)
Q Consensus 68 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 147 (498)
.+...|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345567778888888888888888888887653 3366777778888888888888888888888764 34566777777
Q ss_pred HHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcC
Q 041942 148 YFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRG 185 (498)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 185 (498)
.++...|++++|.+.|++... .+...+..+..++.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 788888888888877775443 23344555555554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-06 Score=83.67 Aligned_cols=111 Identities=6% Similarity=0.023 Sum_probs=75.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhC
Q 041942 343 GGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHG 413 (498)
Q Consensus 343 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g 413 (498)
..+.+.|++++|++.|++..+ ..|+ ...+..+..++.+.|++++|.+.+++..+ +.|+ ...|...|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC
Confidence 344556677777777777766 3343 56666666777777777777777777766 3444 33444777
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHH--HHhCCCchHHHHHHHH
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNI--YASRGEWNRVEKVRKL 458 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 458 (498)
++++|...++++++++|++..++..++.+ +.+.|++++|++.+++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 77777788888888889999999988888 8888999999999884
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.4e-05 Score=76.27 Aligned_cols=148 Identities=7% Similarity=-0.125 Sum_probs=73.7
Q ss_pred HHHhhcccchhhHHHHHHHHHHhCCCCC----------------hHHHHHHHHHHHhcCChhHHHHhhccCCC-----CC
Q 041942 112 LKACTRLLYRNMGFCVHGKIVKYGFEFN----------------RFVRNSLIYFHANCGDLNTASVLFDGDAK-----MD 170 (498)
Q Consensus 112 i~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~ 170 (498)
.+.+...|++++|.+.+..+.+...... ...+..+...|...|++++|.+.+....+ ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456677888888888888887532211 01355666677777777777766654432 01
Q ss_pred c----chHHHHHHHHHhcCChHHHHHHHhcCC-----CCC----cchHHHHHHHHHhcCChHHHHHHHhhCCC-------
Q 041942 171 V----VAWSSLTAGYARRGELSMARSLFDEMP-----VRD----LVSWNVMITGYAKQGEMEKANELFNEVPK------- 230 (498)
Q Consensus 171 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------- 230 (498)
. .+.+.+...+...|+++.|..++.... ..+ ..++..+...+...|++++|..+++.+..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 112222223334455666665555443 001 12344444555555555555555443321
Q ss_pred -C-ChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 041942 231 -R-DVVSWNAMISGYVLCGMNKQALEMFEEM 259 (498)
Q Consensus 231 -~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 259 (498)
+ ...++..++..|...|++++|..++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 0 1123444445555555555555554444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.5e-06 Score=63.45 Aligned_cols=93 Identities=8% Similarity=0.006 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--------HHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT--------EIT 372 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--------~~~ 372 (498)
...+..+...+.+.|++++|+..|++..+ .+...|..+..+|...|++++|++.+++.++. .|+ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHHHH
Confidence 34567789999999999999999988663 46789999999999999999999999999873 332 135
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 373 FVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
|..+..++...|++++|++.+++..+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666777788888888888887766
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=7e-06 Score=64.08 Aligned_cols=95 Identities=6% Similarity=-0.143 Sum_probs=82.8
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 041942 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVL 377 (498)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~ 377 (498)
.+...+..+...+...|++++|...|+.... .+...|..+..++...|++++|...+++..+. .| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence 4567778889999999999999999987653 46788999999999999999999999999984 45 477888888
Q ss_pred HHHhhcCCHHHHHHHHHHhHH
Q 041942 378 VACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.++...|++++|...++++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999998877
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.6e-06 Score=67.06 Aligned_cols=134 Identities=16% Similarity=0.055 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CH
Q 041942 305 LHGNALIDMYAKCGSIERAIEVFLGMRD-----RD----VSTWSTLIGGLAFHGFAEESIAMFREMQRL----KVRP-TE 370 (498)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~ 370 (498)
.++..+...+...|++++|...+++..+ ++ ..++..+...+...|++++|...+++..+. +-.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4556677777788888888888776553 11 136677777788888888888888776652 1111 13
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCch
Q 041942 371 ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWN 450 (498)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 450 (498)
..+..+...+...|++++|.+.+++..+...-. ++ .+....++..++.+|...|+++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~--------------~~~~~~~~~~la~~~~~~g~~~ 146 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---------KD--------------RIGEGRACWSLGNAYTALGNHD 146 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TC--------------HHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc---------cc--------------hHhHHHHHHHHHHHHHHccCHH
Confidence 355566667777777777777777665510000 00 0111346888999999999999
Q ss_pred HHHHHHHHhhh
Q 041942 451 RVEKVRKLMDD 461 (498)
Q Consensus 451 ~A~~~~~~m~~ 461 (498)
+|...+++..+
T Consensus 147 ~A~~~~~~a~~ 157 (164)
T 3ro3_A 147 QAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-05 Score=61.02 Aligned_cols=94 Identities=11% Similarity=-0.042 Sum_probs=53.1
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH 150 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (498)
..|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|+++.|...++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 445555555566666666666666655432 2344455555555566666666666666665543 23455555666666
Q ss_pred HhcCChhHHHHhhccC
Q 041942 151 ANCGDLNTASVLFDGD 166 (498)
Q Consensus 151 ~~~g~~~~A~~~~~~~ 166 (498)
...|++++|...|++.
T Consensus 88 ~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH
Confidence 6666666666666543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=8.7e-06 Score=62.12 Aligned_cols=91 Identities=10% Similarity=0.009 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 041942 306 HGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACS 381 (498)
Q Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 381 (498)
.+..+...+.+.|++++|...|++..+ | +...|..+..++...|++++|+..|++.++ +.|+ ...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 345677788999999999999998763 3 678899999999999999999999999999 5564 678888889999
Q ss_pred hcCCHHHHHHHHHHhHH
Q 041942 382 HAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 382 ~~g~~~~a~~~~~~~~~ 398 (498)
..|++++|...++++.+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998876
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=61.59 Aligned_cols=114 Identities=11% Similarity=-0.049 Sum_probs=57.7
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH 150 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (498)
..|..+...+...|++++|...|++..... +.+...+..+..++...|+++.|...++...+.. +.+...+..+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344445555555555555555555554432 2234455555555555555555555555555543 22344555555555
Q ss_pred HhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCC
Q 041942 151 ANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGE 186 (498)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 186 (498)
...|++++|...|+.... .+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555555555554322 233344444445544443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.5e-05 Score=71.70 Aligned_cols=158 Identities=18% Similarity=0.060 Sum_probs=100.1
Q ss_pred ChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHH
Q 041942 217 EMEKANELFNEVPK--R-DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293 (498)
Q Consensus 217 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 293 (498)
++++|...++...+ | +...+..+...|.+.|++++|...|++..+....... -..+.+..+-
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------------~~~~~~~~~~-- 192 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-------------FSNEEAQKAQ-- 192 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-------------CCSHHHHHHH--
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-------------CChHHHHHHH--
Confidence 34444444444332 1 3456777777777788888888888777654311110 0001111110
Q ss_pred HHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-
Q 041942 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT- 369 (498)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~- 369 (498)
+.....+..+..+|.+.|++++|...+++..+ .+...|..+..+|...|++++|+..|+++++ +.|+
T Consensus 193 -------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~ 263 (336)
T 1p5q_A 193 -------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNN 263 (336)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSC
T ss_pred -------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCC
Confidence 01134556677777777888888777776652 3667888888888899999999999998888 4554
Q ss_pred HHHHHHHHHHHhhcCCHHHH-HHHHHHhHH
Q 041942 370 EITFVGVLVACSHAGKVEEG-KKYFKLMRD 398 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 398 (498)
...+..+..++.+.|+.++| ...++.|..
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777778888888888887 446666654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.16 E-value=8e-06 Score=75.93 Aligned_cols=116 Identities=9% Similarity=0.039 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcC
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRL--------------KVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~--------------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 401 (498)
.|..+...+.+.|++++|+..|++.++. ...| +...|..+..++.+.|++++|.+.++++.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--- 301 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--- 301 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH---
Confidence 3455566666666666666666666541 0122 245666777777778888888888877766
Q ss_pred CCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHH
Q 041942 402 IEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKV 455 (498)
Q Consensus 402 ~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 455 (498)
+.|+ ...|...|++++|...|+++++++|++..++..+..++...++.+++.+.
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 33444778888888888888888999999999999999888888777653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.1e-05 Score=59.54 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=26.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTE----ITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+...+...|++++|...|+++.+. .|+. ..+..+..++.+.|++++|...++++.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444555555555555555542 2221 2444444444555555555555544444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.15 E-value=6.1e-06 Score=66.76 Aligned_cols=101 Identities=10% Similarity=-0.022 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CC---------CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRL-------KV---------RPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~-------~~---------~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
.+......+.+.|++++|+..|.+.+.. +- .|. ...|..+..++.+.|++++|...++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~- 91 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK- 91 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-
Confidence 4455566666667777777776666552 00 121 34556666666677777777777766666
Q ss_pred cCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCC-chHHHHH
Q 041942 400 YNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDES-GDYVLLS 440 (498)
Q Consensus 400 ~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~ 440 (498)
+.|+ ...|...|++++|...|+++++++|+++ .+...+.
T Consensus 92 --~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 92 --REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp --HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred --cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3344 2233366666666666666666666665 3343443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.9e-05 Score=60.77 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=76.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCC---CchHHHHHH
Q 041942 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDE---SGDYVLLSN 441 (498)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 441 (498)
+..+...+...|++++|...++.+.+..+-.|. ...|...|++++|...++++++..|++ +.++..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344567788999999999999999884343331 334448999999999999999999999 677999999
Q ss_pred HHHhCCCchHHHHHHHHhhhCC
Q 041942 442 IYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
+|...|++++|...|+++.+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999998754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.1e-05 Score=57.60 Aligned_cols=94 Identities=12% Similarity=-0.015 Sum_probs=74.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP--TEITFVGVLV 378 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~ 378 (498)
...+..+...+...|++++|...|++.. ..+...|..+...+...|++++|...+++..+.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 4455567777778888888888887654 2356778888889999999999999999998843 22 4777888888
Q ss_pred HHhhc-CCHHHHHHHHHHhHH
Q 041942 379 ACSHA-GKVEEGKKYFKLMRD 398 (498)
Q Consensus 379 ~~~~~-g~~~~a~~~~~~~~~ 398 (498)
.+... |++++|.+.++++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 99999 999999999998877
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.2e-05 Score=61.94 Aligned_cols=92 Identities=4% Similarity=-0.083 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----------hhHHHhhCChHHHHHHHHHHHccCCCCCchHH
Q 041942 369 TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----------IRHYGVHGDVELGRLANKRLLNMRKDESGDYV 437 (498)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 437 (498)
+...+..+...+...|++++|...+++..+ ..|+ ...|...|++++|...++++++.+|+++.++.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 467788888999999999999999999987 4565 22344899999999999999999999999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 438 LLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.++.+|...|++++|...+++..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999998754
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-05 Score=65.22 Aligned_cols=95 Identities=8% Similarity=-0.029 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhc--------CC-------CCC--------hhHHHhhCChHHHHHHHHHHH
Q 041942 370 EITFVGVLVACSHAGKVEEGKKYFKLMRDEY--------NI-------EPN--------IRHYGVHGDVELGRLANKRLL 426 (498)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~-------~p~--------~~~y~~~g~~~~a~~~~~~~~ 426 (498)
...+......+.+.|++++|...|.+..... .. .|. ...|.+.|++++|...+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3456667788999999999999999988720 00 222 334449999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 427 NMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+++|+++.+|..++.+|...|++++|+..|++..+...
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999987643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00038 Score=63.07 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHhccCCchHHHHHH
Q 041942 266 PDDVTMLSLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 266 p~~~~~~~li~~~~~~~~~~~a~~~~ 291 (498)
++...+..++..|...|+.++|.+++
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~ 325 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVF 325 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45556666666666666666666666
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00028 Score=63.91 Aligned_cols=230 Identities=12% Similarity=0.027 Sum_probs=120.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhccc-chhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhc-
Q 041942 76 IIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL-YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANC- 153 (498)
Q Consensus 76 ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 153 (498)
+-....+.+..++|+++++.+.... +-+...|+.--.++...| .+++++.+++.+.... +-+..+|+.-..++...
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhc
Confidence 3333444556678888888887743 224445666555555566 4788888888888764 34666776665555555
Q ss_pred C-ChhHHHHhhccCCCCCcc---hHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCC
Q 041942 154 G-DLNTASVLFDGDAKMDVV---AWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP 229 (498)
Q Consensus 154 g-~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 229 (498)
+ ++++++++++.+...++. +|+.-...+.+.|.++. .+ ...+.++.+.++++.
T Consensus 138 ~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~----------~~-------------~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGR----------IS-------------EAQWGSELDWCNEML 194 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTC----------CC-------------HHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccc----------cc-------------hhhHHHHHHHHHHHH
Confidence 5 666777777666554433 33332223322222220 00 000113444444333
Q ss_pred C---CChhhHHHHHHHHHhCCC-------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc---------------
Q 041942 230 K---RDVVSWNAMISGYVLCGM-------NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL--------------- 284 (498)
Q Consensus 230 ~---~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~--------------- 284 (498)
+ .|..+|+.....+.+.++ ++++++.+++.+... +-|...|+.+-..+.+.|+.
T Consensus 195 ~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~ 273 (349)
T 3q7a_A 195 RVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASK 273 (349)
T ss_dssp HHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--
T ss_pred HhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccccccccccccc
Confidence 2 344455554444444443 455566665555442 23444444444434333332
Q ss_pred -----hHHHHHHHHHHHhh----cCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 041942 285 -----EVGKKVHCTLLDMT----SGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 285 -----~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
........+..... ...++......|++.|...|+.++|.++++.+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 274 LNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp ------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 12222221111111 114566777888999999999999999999886
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-05 Score=61.79 Aligned_cols=63 Identities=5% Similarity=-0.024 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3567788888999999999999999988843 33567777888888888999888888888776
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.3e-06 Score=64.98 Aligned_cols=86 Identities=6% Similarity=0.075 Sum_probs=50.0
Q ss_pred hCCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHH
Q 041942 347 FHGFAEESIAMFREMQRLKV-RP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKR 424 (498)
Q Consensus 347 ~~~~~~~A~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~ 424 (498)
..|++++|+..|++.++.+. .| +...+..+..++...|++++|...++++.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-------------------------- 55 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK-------------------------- 55 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------
Confidence 35778888888888887431 13 245666666777777777777777777666
Q ss_pred HHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 425 LLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.+|+++.++..++.+|...|++++|+..+++..+
T Consensus 56 ---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 56 ---QFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---hCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.1e-05 Score=60.50 Aligned_cols=95 Identities=7% Similarity=0.054 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKV--RPT----EITFV 374 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~~ 374 (498)
...+..+...+...|++++|...|++..+ .+...+..+...|...|++++|...++++.+... .++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34566778888889999999999887653 4677888888899999999999999998877321 112 56677
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 375 GVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 375 ~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+..++...|++++|.+.++++.+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 777788888888888888887776
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.02 E-value=5e-06 Score=63.02 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=65.9
Q ss_pred hcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHH
Q 041942 316 KCGSIERAIEVFLGMRDR------DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEE 388 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 388 (498)
..|++++|+..|++..+. +...|..+..+|...|++++|+..+++.++. .|+ ...+..+..++.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 357888999999876643 3467889999999999999999999999984 454 7788888899999999999
Q ss_pred HHHHHHHhHHh
Q 041942 389 GKKYFKLMRDE 399 (498)
Q Consensus 389 a~~~~~~~~~~ 399 (498)
|...+++..+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988773
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=8e-06 Score=68.58 Aligned_cols=137 Identities=9% Similarity=-0.096 Sum_probs=82.4
Q ss_pred CCChHHHHHhcccCC---CCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH----------------hhHHHHH
Q 041942 52 PGAINYAHKMFVKIT---EPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNK----------------FTFSFVL 112 (498)
Q Consensus 52 ~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~----------------~~~~~li 112 (498)
.|+++.+.+.|+... ......+..+...+.+.|++++|+..|++..+.. +.+. ..|..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHH
Confidence 567777777776543 2234567777888888999999999999987742 1121 5566666
Q ss_pred HHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHH
Q 041942 113 KACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSM 189 (498)
Q Consensus 113 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 189 (498)
.++...|++++|...++...+.. +.+...+..+..+|...|++++|...|+.... .+...+..+..++...++.++
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777653 33555666666666666777766666664332 233444444444444444443
Q ss_pred H
Q 041942 190 A 190 (498)
Q Consensus 190 A 190 (498)
+
T Consensus 175 ~ 175 (198)
T 2fbn_A 175 K 175 (198)
T ss_dssp -
T ss_pred H
Confidence 3
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.1e-05 Score=62.07 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRL----KVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4555666677777777777777666542 1111 134566667777888888888888877665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00094 Score=60.15 Aligned_cols=78 Identities=6% Similarity=-0.055 Sum_probs=37.9
Q ss_pred hHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-chHHHHHH
Q 041942 218 MEKANELFNEVPK---RDVVSWNAMISGYVLCGM--NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD-LEVGKKVH 291 (498)
Q Consensus 218 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~a~~~~ 291 (498)
++++..+++.+.. .+..+|+.-...+...++ +++++..++++.+.. +-+...|+.-...+...|. ++++...+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3455555554442 344555555555555552 556666666665543 2244444444444444444 25555555
Q ss_pred HHHHH
Q 041942 292 CTLLD 296 (498)
Q Consensus 292 ~~~~~ 296 (498)
...+.
T Consensus 169 ~~~I~ 173 (331)
T 3dss_A 169 DSLIT 173 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.89 E-value=6.5e-05 Score=72.45 Aligned_cols=115 Identities=7% Similarity=-0.007 Sum_probs=69.8
Q ss_pred HHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHH
Q 041942 276 TACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAE 352 (498)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 352 (498)
..+...|++++|...|++.+... +.+...+..+..+|.+.|++++|...+++..+ .+...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34566777778877776555543 23455666677777777777777777765542 34566777777777777777
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHH--HhhcCCHHHHHHHHH
Q 041942 353 ESIAMFREMQRLKVRPT-EITFVGVLVA--CSHAGKVEEGKKYFK 394 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p~-~~~~~~l~~~--~~~~g~~~~a~~~~~ 394 (498)
+|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777663 343 3333333333 666677777777666
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.4e-06 Score=61.50 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhC
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHG 413 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g 413 (498)
...|..+...+...|++++|++.|++..+. .| +...+..+..++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------- 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--------------- 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------
Confidence 455666777777777777777777777763 34 355666666666666666666666665544
Q ss_pred ChHHHHHHHHHHHccCCCC------CchHHHHHHHHHhCCCchHHHHHHHHh
Q 041942 414 DVELGRLANKRLLNMRKDE------SGDYVLLSNIYASRGEWNRVEKVRKLM 459 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m 459 (498)
++|++ ..++..++.++...|++++|+..++++
T Consensus 67 --------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 67 --------------YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp --------------SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred --------------hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 45555 556777888888888777776665544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0023 Score=57.64 Aligned_cols=140 Identities=9% Similarity=-0.005 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCCC---CChhHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc------------
Q 041942 320 IERAIEVFLGMRD---RDVSTWSTLIGGLAFHGF-AEESIAMFREMQRLKVRPTEITFVGVLVACSHA------------ 383 (498)
Q Consensus 320 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------------ 383 (498)
+++++.+++.+.+ .|..+|+.-.-.+...|. ++++++.++++++.. +-|...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 5555555555542 244455554444445555 355666666665532 12344444433333332
Q ss_pred --CCHHHHHHHHHHhHHhcCCCCC-hhH--HH----------------hhCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 041942 384 --GKVEEGKKYFKLMRDEYNIEPN-IRH--YG----------------VHGDVELGRLANKRLLNMRKDESGDYVLLSNI 442 (498)
Q Consensus 384 --g~~~~a~~~~~~~~~~~~~~p~-~~~--y~----------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 442 (498)
+.++++.+.+..... ..|+ ... |. +.+.++++...+++++++.|++.-.+..++..
T Consensus 205 ~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~ 281 (331)
T 3dss_A 205 PENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 281 (331)
T ss_dssp CHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHH
Confidence 234555555555544 2333 111 11 12456778888888888888774333333322
Q ss_pred ---HHhCCCchHHHHHHHHhhhCC
Q 041942 443 ---YASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 443 ---~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.-..|..+++...+.++.+.+
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHhhcccccHHHHHHHHHHHHHhC
Confidence 113566777777777776543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=1.5e-05 Score=62.68 Aligned_cols=98 Identities=7% Similarity=-0.068 Sum_probs=76.4
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHH
Q 041942 346 AFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKR 424 (498)
Q Consensus 346 ~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~ 424 (498)
.+.+.+++|++.+++.++ ..| +...|..+..++...++++.+...++ .+++|+..|++
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------~~~eAi~~le~ 71 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ-------------------MIQEAITKFEE 71 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------HHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh-------------------HHHHHHHHHHH
Confidence 345678889999999888 445 46777777777777776665554332 25678889999
Q ss_pred HHccCCCCCchHHHHHHHHHhCC-----------CchHHHHHHHHhhhCCC
Q 041942 425 LLNMRKDESGDYVLLSNIYASRG-----------EWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~ 464 (498)
+++++|++..+|..++.+|.+.| ++++|++.|++..+.+.
T Consensus 72 AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 72 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 99999999999999999998875 89999999999987543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00024 Score=68.13 Aligned_cols=125 Identities=11% Similarity=-0.009 Sum_probs=89.9
Q ss_pred HHhcCCHHHHHHHHhcCC-------CC----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHH
Q 041942 314 YAKCGSIERAIEVFLGMR-------DR----DVSTWSTLIGGLAFHGFAEESIAMFREMQRL-----K-VRPT-EITFVG 375 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~-------~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~ 375 (498)
+...|++++|+.++++.. .+ -..+++.|...|...|++++|..++++.++. | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 344566666655554432 12 1357888899999999999999988887642 2 1233 467888
Q ss_pred HHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhCCCchHH
Q 041942 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDES---GDYVLLSNIYASRGEWNRV 452 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A 452 (498)
|...|...|++++|+.++++..+ ++++. +.|++| .....+..++...|++++|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~----------------------i~~~~--lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYA----------------------ILLVT--HGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----------------------HHHHH--TCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH----------------------HHHHH--hCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999988766 33333 244444 4567888899999999999
Q ss_pred HHHHHHhhhC
Q 041942 453 EKVRKLMDDS 462 (498)
Q Consensus 453 ~~~~~~m~~~ 462 (498)
+.+|+++++.
T Consensus 455 e~~~~~~~~~ 464 (490)
T 3n71_A 455 EFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00012 Score=57.75 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-------CCC-HHHH----HHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKV-------RPT-EITF----VGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-------~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.|..+..++...|++++|+..+++.++ + .|+ ...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALH--YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888899999999999999999999888 5 676 4556 6666777777777777777777665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00096 Score=65.59 Aligned_cols=184 Identities=7% Similarity=-0.040 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC----------chHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcC
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD----------LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCG 318 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (498)
.++|++.++++.... +-+...|+.--.++...|+ ++++...++..+.... -+...|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcc
Confidence 356677777776553 2233344433333333333 4555555544443332 23333333333344444
Q ss_pred --CHHHHHHHHhcCCC---CChhHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 041942 319 --SIERAIEVFLGMRD---RDVSTWSTLIGGLAFHG-FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKY 392 (498)
Q Consensus 319 --~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 392 (498)
+++++.+.++++.+ .|..+|+.-.-.+...| .++++++.++++++.. .-|...|+.....+.+.+...
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~----- 195 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP----- 195 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC-----
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccc-----
Confidence 44555555554442 23444444444444444 4555555555554422 112334433333322211100
Q ss_pred HHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchH
Q 041942 393 FKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451 (498)
Q Consensus 393 ~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (498)
. .+ +.. -...+.++++.+.+++++.++|++..+|..+...+.+.+++++
T Consensus 196 -----~-~~--~~~--~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 -----D-SG--PQG--RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp -----C-SS--SCC--SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred -----c-cc--ccc--cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 0 00 000 0012567899999999999999999999999999999988655
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00035 Score=67.01 Aligned_cols=92 Identities=13% Similarity=0.043 Sum_probs=60.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVA 379 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~ 379 (498)
...|..+..+|.+.|++++|+..+++..+ .+...|..+..+|...|++++|+..|+++++ +.|+ ...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 34555667777777777777777766552 3566777778888888888888888888877 4454 4566666677
Q ss_pred HhhcCCHHHHHH-HHHHhH
Q 041942 380 CSHAGKVEEGKK-YFKLMR 397 (498)
Q Consensus 380 ~~~~g~~~~a~~-~~~~~~ 397 (498)
+.+.|+.+++.+ .++.|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777766653 444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0001 Score=53.84 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=39.0
Q ss_pred hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
..|++++|...|+++++++|+++.+|..++.+|...|++++|++.|++..+.
T Consensus 19 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 19 KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455555555555555568888888888999999999999998888887653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00015 Score=54.37 Aligned_cols=44 Identities=5% Similarity=-0.038 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 353 ESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 353 ~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.|+..|++..+. .| +...+..+...+...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 47 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD 47 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 467777777773 34 466677777777777777777777777666
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00012 Score=54.37 Aligned_cols=97 Identities=13% Similarity=0.006 Sum_probs=72.6
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCC------hHH
Q 041942 69 DTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFN------RFV 142 (498)
Q Consensus 69 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 142 (498)
+...|..+...+...|++++|++.|++..+.. +.+...|..+..++...|++++|...+++.++... .+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHHHHHHHH
Confidence 45667778888888999999999998887753 34667788888888888999999999988887532 22 455
Q ss_pred HHHHHHHHHhcCChhHHHHhhccCC
Q 041942 143 RNSLIYFHANCGDLNTASVLFDGDA 167 (498)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~ 167 (498)
+..+..++...|+.+.|...++++.
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 6667777777777777777666654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0002 Score=50.87 Aligned_cols=82 Identities=18% Similarity=0.324 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhC
Q 041942 335 VSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHG 413 (498)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g 413 (498)
...+..+...+...|++++|+..+++..+. .| +...+..+...+.+.|++++|...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~-------------------- 66 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYY-------------------- 66 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHH--------------------
Confidence 345555666666666666666666666653 23 3444444445555555554444444
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (498)
+++++.+|.++.++..++.++...|
T Consensus 67 ---------~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 67 ---------QKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---------HHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ---------HHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 4444456777777777777776543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00031 Score=64.37 Aligned_cols=140 Identities=9% Similarity=-0.079 Sum_probs=60.3
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 041942 71 FMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH 150 (498)
Q Consensus 71 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (498)
..|..+...+.+.|++++|+..|++.... .|+... +...++...+...+ ...+|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 35666777788888999999998887763 344321 11222222221111 012455555556
Q ss_pred HhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHH-HHhcCChHHHHH
Q 041942 151 ANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITG-YAKQGEMEKANE 223 (498)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~A~~ 223 (498)
.+.|++++|...|+.... .+...|..+..++...|++++|...|++.. +.+...+..+... ....+..+.+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665554332 234455555666666666666666666655 2223333333333 223344555555
Q ss_pred HHhhCC
Q 041942 224 LFNEVP 229 (498)
Q Consensus 224 ~~~~~~ 229 (498)
.|..+.
T Consensus 321 ~~~~~l 326 (338)
T 2if4_A 321 MYKGIF 326 (338)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 555554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0007 Score=62.77 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=56.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVA 379 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~ 379 (498)
...+..+..+|.+.|++++|+..+++..+ .+...|..+..+|...|++++|+..|+++.+ +.|+ ...+..+...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 45556677777777777777777766553 2456777777777788888888888887777 3453 4555555555
Q ss_pred HhhcCCHHHHHH
Q 041942 380 CSHAGKVEEGKK 391 (498)
Q Consensus 380 ~~~~g~~~~a~~ 391 (498)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00052 Score=53.45 Aligned_cols=109 Identities=7% Similarity=-0.002 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHh----hCChHHHHH
Q 041942 349 GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN----IRHYGV----HGDVELGRL 420 (498)
Q Consensus 349 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~y~~----~g~~~~a~~ 420 (498)
+++++|+++|++..+.| .|+.. |...|...+..++|.+++++..+ .|...- ...|.. .+++++|..
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-LNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 35667777777777665 23322 55555666666777777777666 322111 222223 567888888
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHh----CCCchHHHHHHHHhhhCCCc
Q 041942 421 ANKRLLNMRKDESGDYVLLSNIYAS----RGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 465 (498)
.|+++.+. .++.++..|+..|.. .+++++|+..|++..+.|..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 88888764 677889999999999 89999999999999998864
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00022 Score=51.73 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=54.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPT-EI-TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELG 418 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a 418 (498)
....+...|++++|+..++++.+. .|+ .. .+..+..++...|++++|.+.+++..+ ..|+.......+.+.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~a 80 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE---LNPDSPALQARKMVMDI 80 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHH
Confidence 345667778888888888888773 453 45 677777777788888888888877766 34432221122455555
Q ss_pred HHHHHHHHccCCCC
Q 041942 419 RLANKRLLNMRKDE 432 (498)
Q Consensus 419 ~~~~~~~~~~~~~~ 432 (498)
...|+++...+|++
T Consensus 81 ~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 81 LNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHCCTTHHHHCC
T ss_pred HHHHHHHhccCccc
Confidence 55555555554444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0012 Score=63.27 Aligned_cols=63 Identities=10% Similarity=-0.086 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQR-----LKV-RPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+++.|...|...|++++|+.++++..+ .|- .|+ ..+...+-.++...|.+++|+.++.++++
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888877654 231 122 33445556777788888888888888876
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.001 Score=62.68 Aligned_cols=91 Identities=12% Similarity=0.006 Sum_probs=69.1
Q ss_pred hCCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHH
Q 041942 347 FHGFAEESIAMFREMQR---LKVRPT----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGR 419 (498)
Q Consensus 347 ~~~~~~~A~~~~~~m~~---~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~ 419 (498)
..|++++|+.++++..+ .-+.|+ ..+++.|..+|...|++++|+.++++..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~--------------------- 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK--------------------- 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------------
Confidence 35788999999888765 223343 46788899999999999999999988766
Q ss_pred HHHHHHHccCCCCC---chHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 420 LANKRLLNMRKDES---GDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 420 ~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
++++.. .|+++ ..++.|+.+|..+|++++|+.++++..+
T Consensus 369 -i~~~~l--G~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 369 -PYSKHY--PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp -HHHHHS--CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHc--CCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 333332 33333 5688999999999999999999998864
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00044 Score=50.07 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=35.0
Q ss_pred HHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hh--------HHHhhCChHHHHHHHHHHHccCCCCCchH
Q 041942 377 LVACSHAGKVEEGKKYFKLMRDEYNIEPN-IR--------HYGVHGDVELGRLANKRLLNMRKDESGDY 436 (498)
Q Consensus 377 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~--------~y~~~g~~~~a~~~~~~~~~~~~~~~~~~ 436 (498)
...+.+.|++++|...++++.+ ..|+ .. .|...|++++|...|+++++++|+++.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQ---TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH---HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455666777777777777666 2333 11 22366677777777777777777666555
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.037 Score=57.20 Aligned_cols=167 Identities=14% Similarity=0.083 Sum_probs=109.7
Q ss_pred HHHHhcCChhHHHH-hhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHh
Q 041942 148 YFHANCGDLNTASV-LFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFN 226 (498)
Q Consensus 148 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 226 (498)
......+++++|.+ ++..+. +......++..+.+.|.++.|+++.+.- ..-.......|+++.|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHH
Confidence 33446788888888 664443 1223367777788888888888776421 122445677899999999987
Q ss_pred hCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhh
Q 041942 227 EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH 306 (498)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (498)
.+. +...|..+...+.+.++++.|...|.++.. |..+...+...|+.+...++- +.....+.
T Consensus 677 ~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~-~~a~~~~~------ 738 (814)
T 3mkq_A 677 DES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA-KDAETTGK------ 738 (814)
T ss_dssp TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH-HHHHHTTC------
T ss_pred hhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH-HHHHHcCc------
Confidence 763 567899999999999999999999988752 334444555566666655554 33333321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHH
Q 041942 307 GNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360 (498)
Q Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 360 (498)
++....+|.+.|++++|.+++ .+.+++++|..+-+.
T Consensus 739 ~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 739 FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 133444566677777776665 445677777765544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0057 Score=47.43 Aligned_cols=110 Identities=11% Similarity=-0.002 Sum_probs=60.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh----cCCHHH
Q 041942 247 GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK----CGSIER 322 (498)
Q Consensus 247 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 322 (498)
+++++|+..|++..+.| .|+.. +...|...+.+++|...|++.... + ++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 35667777777777766 33333 555555556666677777444432 2 23344445555555 455555
Q ss_pred HHHHHhcCCC-CChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 041942 323 AIEVFLGMRD-RDVSTWSTLIGGLAF----HGFAEESIAMFREMQRLK 365 (498)
Q Consensus 323 A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~ 365 (498)
|...|++..+ .++..+..|...|.. .+++++|.++|++..+.|
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555554432 344555555555555 555666666666555544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00073 Score=48.24 Aligned_cols=51 Identities=14% Similarity=0.041 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 415 VELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
.++|...++++++++|+++.++..++..+.+.|++++|+..++++.+....
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 577888888888899999999999999999999999999999999987664
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0029 Score=44.48 Aligned_cols=82 Identities=9% Similarity=-0.069 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHH
Q 041942 70 TFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYF 149 (498)
Q Consensus 70 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 149 (498)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4466677777778888888888888877643 3356667777777778888888888888887764 3345566666555
Q ss_pred HHhc
Q 041942 150 HANC 153 (498)
Q Consensus 150 ~~~~ 153 (498)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0019 Score=61.02 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=70.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCC
Q 041942 342 IGGLAFHGFAEESIAMFREMQRLK---VRPT----EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGD 414 (498)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~m~~~~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~ 414 (498)
+..+...|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|+.+++++.+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~---------------- 357 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME---------------- 357 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----------------
Confidence 455667899999999999987631 2333 45788888999999999999999988766
Q ss_pred hHHHHHHHHHHHccCCCC---CchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 415 VELGRLANKRLLNMRKDE---SGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
++++.. .|++ ...++.|+.+|...|++++|+.++++..+
T Consensus 358 ------i~~~~l--g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 358 ------PYRIFF--PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ------HHHHHS--CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------hHHHHc--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 233322 2333 34677888888888888888888887753
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.002 Score=46.75 Aligned_cols=65 Identities=15% Similarity=0.087 Sum_probs=36.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHh
Q 041942 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDM 297 (498)
Q Consensus 232 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 297 (498)
+...+..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++.+..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34455556666666666666666666665543 223445555566666666666666666444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0013 Score=49.04 Aligned_cols=64 Identities=13% Similarity=0.002 Sum_probs=38.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 041942 232 DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296 (498)
Q Consensus 232 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 296 (498)
+...+..+...|...|++++|...|++..+.. +.+...+..+..++...|++++|...|++.+.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666666666666666666666543 23445556666666666666666666644444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0029 Score=58.72 Aligned_cols=386 Identities=9% Similarity=0.010 Sum_probs=209.4
Q ss_pred ChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHh
Q 041942 36 DSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKAC 115 (498)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 115 (498)
.+.+|+.|-. +..+ .+.+.+|.+-|-+ ..|+..|..+|....+.|.+++-+..+...++..- ++..=+.|+-+|
T Consensus 53 ~p~VWs~Lgk-AqL~-~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAK-AQLQ-KGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHH-HTTT-SSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred CccHHHHHHH-HHHc-cCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 3556666666 6666 6777777665533 45566688888888888888888888876665433 334445677788
Q ss_pred hcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCC------------------------CCCc
Q 041942 116 TRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDA------------------------KMDV 171 (498)
Q Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~ 171 (498)
++.++..+.++++ -.|+..-...+.+-|...|.++.|.-+|..+. ..++
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 8887766544333 13555556667777888888888877775322 1367
Q ss_pred chHHHHHHHHHhcCChHHHHHH------------------------------HhcCC---CCCcchHHHHHHHHHhcCCh
Q 041942 172 VAWSSLTAGYARRGELSMARSL------------------------------FDEMP---VRDLVSWNVMITGYAKQGEM 218 (498)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~A~~~------------------------------~~~~~---~~~~~~~~~l~~~~~~~~~~ 218 (498)
.||..+-.+|...+.+..|.-. ++.-. ..-.-.|+-|.-.|++- +.
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CT
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CH
Confidence 7888888888877765544322 11111 11222455555555544 33
Q ss_pred HHHHHHHhhCCC-----------CChhhHHHHHHHHHhCCChHHHHHHH-------------HHHHhCCCCCCHHHHHHH
Q 041942 219 EKANELFNEVPK-----------RDVVSWNAMISGYVLCGMNKQALEMF-------------EEMRSVGERPDDVTMLSL 274 (498)
Q Consensus 219 ~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~-------------~~m~~~g~~p~~~~~~~l 274 (498)
++..+-++..-. .....|.-++-.|.+-.+++.|.... ++++.. ..+...|-..
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKA 356 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRA 356 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHH
Confidence 333333332221 13456777777777777777654321 111111 2233333333
Q ss_pred HHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChh-HHHHHHHHHHhCCCHHH
Q 041942 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVS-TWSTLIGGLAFHGFAEE 353 (498)
Q Consensus 275 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 353 (498)
|.-|.... +..--+++ ..+. ...|. +..++.+.+.|++.-...++..+...|.. .-.++-..|....+++.
T Consensus 357 i~FYL~e~-P~lL~DLL-~vL~---prlDh---~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 357 IQFYLEFK-PLLLNDLL-MVLS---PRLDH---TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp HHHHTTSC-CTTSHHHH-HHHC---TTCCS---TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhC-hHHHHHHH-Hhcc---ccCCh---HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Confidence 44333221 11122222 1111 11111 13455566677777777777777665544 44456667777777654
Q ss_pred HH------------HHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHhhCChHHHHH
Q 041942 354 SI------------AMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHYGVHGDVELGRL 420 (498)
Q Consensus 354 A~------------~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~~g~~~~a~~ 420 (498)
-. .+-.++.+. +-...-......|.+.++|+++..+.++ .++-.| +++-...|+.+-++.
T Consensus 429 LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk----DklykDAietAa~S~~~elaee 501 (624)
T 3lvg_A 429 LRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK----DSLYKDAMQYASESKDTELAEE 501 (624)
T ss_dssp HHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST----TCCTTGGGTTTTTCCCTTHHHH
T ss_pred HHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHHh----cccHHHHHHHHHHcCCHHHHHH
Confidence 32 222233221 1112222333556777778777765532 233344 444446788888888
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhCCCchHHHH
Q 041942 421 ANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEK 454 (498)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 454 (498)
+++-+++.+ +...+......|...=+++-+++
T Consensus 502 LL~yFv~~g--~~EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 502 LLQWFLQEE--KRECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp HHHHHHHHC--STHHHHHHHHHTSSSSSCHHHHH
T ss_pred HHHHHHHcC--chHHHHHHHHHHhhccChHHHHH
Confidence 888877543 33445555555544444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0096 Score=58.48 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=67.2
Q ss_pred chHHHHHHHHHhcC--ChHHHHHHHhcCC---CCCcchHHHHHHHHHhcC-ChHHHHHHHhhCCC---CChhhHHHHHHH
Q 041942 172 VAWSSLTAGYARRG--ELSMARSLFDEMP---VRDLVSWNVMITGYAKQG-EMEKANELFNEVPK---RDVVSWNAMISG 242 (498)
Q Consensus 172 ~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~ 242 (498)
.+|+.-...+.+.+ ++++++..++++. +.+...|+.-..+..+.| ..+++.+.++++.+ .|..+|+.....
T Consensus 108 ~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~l 187 (567)
T 1dce_A 108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHH
Confidence 34444444444555 4466666666555 444555655555556666 66666676666664 244556655555
Q ss_pred HHhC--------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchH
Q 041942 243 YVLC--------------GMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEV 286 (498)
Q Consensus 243 ~~~~--------------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 286 (498)
+.+. +.++++++.+++..... +-+...|..+-..+...++.++
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 4442 44688888888877653 3356677777667766666443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.001 Score=52.33 Aligned_cols=99 Identities=13% Similarity=0.058 Sum_probs=65.9
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCC----------HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh
Q 041942 317 CGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGF----------AEESIAMFREMQRLKVRPT-EITFVGVLVACSH 382 (498)
Q Consensus 317 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 382 (498)
.+.+++|...++...+ .+...|..+..++...++ +++|+..|++.++ +.|+ ..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHH
Confidence 3445566666655442 255566666666666554 5699999999999 6675 6788888888887
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCch
Q 041942 383 AGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 383 ~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
.|.+ .|+. -...|++++|...|+++++++|++...
T Consensus 93 lg~l----------------~P~~--~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 93 FAFL----------------TPDE--TEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHH----------------CCCH--HHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred hccc----------------Ccch--hhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 6632 3331 112467888888888888888887533
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.12 Score=53.45 Aligned_cols=27 Identities=26% Similarity=0.139 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcC
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGM 330 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (498)
...|..+...+.+.++++.|.+.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344445555555555555555554443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.57 E-value=6.1e-05 Score=69.53 Aligned_cols=254 Identities=14% Similarity=0.125 Sum_probs=171.9
Q ss_pred CChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHH
Q 041942 53 GAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIV 132 (498)
Q Consensus 53 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 132 (498)
+++++|.+.-++...| .+|..|..+....+++.+|++.|-+. -|+..|..+|.++.+.|.++.-...+....
T Consensus 39 ~~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR 110 (624)
T 3lvg_A 39 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 110 (624)
T ss_dssp CCSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS
T ss_pred cccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3455555544444344 45889999999999999998876332 366778999999999999999999888776
Q ss_pred HhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC--------------
Q 041942 133 KYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP-------------- 198 (498)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------- 198 (498)
+. ..++.+=+.|+-+|++.+++.+-++++.. |+......+..-|...|.++.|.-+|..+.
T Consensus 111 k~--~ke~~IDteLi~ayAk~~rL~elEefl~~---~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 111 KK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp TT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred HH--hcccccHHHHHHHHHhhCcHHHHHHHHcC---CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 65 33555667899999999998876655543 566666777888888888888888877665
Q ss_pred ----------CCCcchHHHHHHHHHhcCChHHHHHHHh-hCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC
Q 041942 199 ----------VRDLVSWNVMITGYAKQGEMEKANELFN-EVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPD 267 (498)
Q Consensus 199 ----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 267 (498)
..++.||..+..+|...+++.-|.-.-- -+..++. ...++..|-..|.+++-+.+++.-.... +..
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAH 262 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAH 262 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCC
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chh
Confidence 3467889999889998888776644322 2222211 1235566778888888888888776332 456
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHh-hcC------CcchhhHHHHHHHHHhcCCHHHHH
Q 041942 268 DVTMLSLLTACADLGDLEVGKKVHCTLLDM-TSG------VAKVLHGNALIDMYAKCGSIERAI 324 (498)
Q Consensus 268 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~~l~~~~~~~~~~~~A~ 324 (498)
...|+.|.-.|++- ++++..+.+ ++.-. -++ ......|.-++-.|.+-.+++.|.
T Consensus 263 mGmFTELaILYsKY-~PeKlmEHl-klf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 263 MGMFTELAILYSKF-KPQKMREHL-ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHHHHSS-CTTHHHHHH-TTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHH-HHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 67777777777664 444444444 22111 111 112455667777777777777664
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.042 Score=49.79 Aligned_cols=73 Identities=11% Similarity=0.037 Sum_probs=54.3
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG 410 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~ 410 (498)
.+..+|..+...+...|++++|...++++... .|+...|..+...+.-.|++++|.+.+++... +.|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence 46677777777777778888888888888884 37777776677777788888888888888766 566655553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0096 Score=45.54 Aligned_cols=109 Identities=8% Similarity=0.035 Sum_probs=55.3
Q ss_pred CChhHHHHHHHHHHhCCCH------HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 333 RDVSTWSTLIGGLAFHGFA------EESIAMFREMQRLKVRPTEI-TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~------~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
.|..+|-..+....+.|+. ++..++|++.... ++|+.. .|...+..+.+ ...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIr-------------YA~------- 69 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVR-------------FAE------- 69 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHH-------------HHH-------
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHH-------------HHH-------
Confidence 4677777777777777777 7777777777763 556521 11111111110 000
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
|...++.++|+.+|+.++++...-+.+|...+..-.++|+...|.+++.+....+.+
T Consensus 70 ---~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 70 ---LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp ---HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ---HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 002234444555555554443333445555555555555555555555555554443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.12 Score=46.80 Aligned_cols=74 Identities=9% Similarity=-0.005 Sum_probs=60.7
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041942 301 VAKVLHGNALIDMYAKCGSIERAIEVFLGMR--DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGV 376 (498)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 376 (498)
+.+...+.++...+...|++++|...+++.. .|+...|..+...+...|++++|.+.|++... +.|...+|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 5567777777777777899999999998876 46766777888889999999999999999998 67888776543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.014 Score=50.60 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=33.9
Q ss_pred hCChHHHHHHHHHHHccCCCC-CchHHHHHHHHHhC-CCchHHHHHHHHhhhCCCc
Q 041942 412 HGDVELGRLANKRLLNMRKDE-SGDYVLLSNIYASR-GEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 465 (498)
.|+.++|++.|+++++++|+. ..++..++..++.. |++++|.+.+++.......
T Consensus 217 gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 217 GGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 355666666666666666653 66666666666663 6666666666666665555
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.015 Score=54.72 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=65.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-------C-C---hhHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----C-CCCC-HHH
Q 041942 311 IDMYAKCGSIERAIEVFLGMRD-------R-D---VSTWSTLIGGLAFHGFAEESIAMFREMQRL-----K-VRPT-EIT 372 (498)
Q Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~-------~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~ 372 (498)
+..+.+.|++++|+.++++..+ + + ..+++.+...|...|++++|+.++++++.. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445567788888877764431 2 2 357888999999999999999999987642 2 1233 457
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 373 FVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888999999999999999988766
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.014 Score=55.04 Aligned_cols=63 Identities=8% Similarity=-0.039 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRL-----K-VRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|...|..+|++++|+.++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 35556666666666666666666655431 1 1122 34566666666666777776666666554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.053 Score=42.08 Aligned_cols=84 Identities=7% Similarity=-0.061 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHhHHhcCCCCC---------hhHHHhhCChHHH
Q 041942 351 AEESIAMFREMQRLKVRPTEITFVGVLVACSHAG---KVEEGKKYFKLMRDEYNIEPN---------IRHYGVHGDVELG 418 (498)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~p~---------~~~y~~~g~~~~a 418 (498)
...+.+-|.+....|. ++..+...+..++++.+ +.++++.+++.+.+. . .|+ ...|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455566666666553 67777777777777777 566888888887773 2 242 2333488888888
Q ss_pred HHHHHHHHccCCCCCchHH
Q 041942 419 RLANKRLLNMRKDESGDYV 437 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~ 437 (498)
++.++.+++.+|++..+..
T Consensus 91 ~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 8888888889998765443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.3 Score=36.64 Aligned_cols=137 Identities=10% Similarity=0.051 Sum_probs=85.7
Q ss_pred hcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYF 393 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 393 (498)
-.|.+++..++..+... .+..-||-+|.-....-+-+-..+.++..-+- +..+ ..-...++.+|.+.|...+-..+-
T Consensus 19 ldG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDis~C~NlKrVi~C~~~~n~~se~vd~A 97 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQNLKSVVECGVINNTLNEHVNKA 97 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCSCTHHHHHHHHHTTCCCHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhh-cCcHhhhcHHHHHHHHHHhcchHHHHHHH
Confidence 35667777777766553 34555666665555555656566655554331 1111 112334455555555432211111
Q ss_pred HHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 394 KLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 394 ~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
.......|+.++-.+++..++...+.++.....++.+|.+.|+..+|.++++++-++|++
T Consensus 98 ------------Ld~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 98 ------------LDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp ------------HHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------HHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 111124677888888888876677888999999999999999999999999999999986
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.52 Score=37.54 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=47.0
Q ss_pred HhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHH
Q 041942 213 AKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHC 292 (498)
Q Consensus 213 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 292 (498)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+...++-
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla- 83 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ- 83 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH-
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH-
Confidence 3455555555554443 2344555555555555555555555554431 223333344444444444433
Q ss_pred HHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCC
Q 041942 293 TLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
+.....+. ++.....+...|+++++.++|.+..
T Consensus 84 ~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 22222221 1233334445566666666665543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.079 Score=37.45 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=36.8
Q ss_pred ChhHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 334 DVSTWSTLIGGLAFHGF---AEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 334 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
|+..+..+..++...++ .++|..++++..+ ..|+ ......+...+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555543333 5666666666666 4454 45555555666666666666666666655
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.29 Score=39.00 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=20.1
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFRE 360 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 360 (498)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344444444444433 2344455555555555555555544444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.059 Score=39.08 Aligned_cols=63 Identities=8% Similarity=-0.121 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLK------VRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.-+..+...+...|++..|..+|+...+.- -.+....+..|..++.+.|+++.|...++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 345567788888888888888888876531 112355666777777777777777777777665
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.045 Score=47.54 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhhc-----CCHHHHHHHHHHhHHhcCCCCC--h-------hHHHh-h
Q 041942 351 AEESIAMFREMQRLKVRPT---EITFVGVLVACSHA-----GKVEEGKKYFKLMRDEYNIEPN--I-------RHYGV-H 412 (498)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~--~-------~~y~~-~ 412 (498)
...|...+++.++ +.|+ ...|..+...|.+. |+.++|.+.|++..+ +.|+ + ..+.. .
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhc
Confidence 4667777777777 5676 45677777777773 888888888888877 4553 1 12224 4
Q ss_pred CChHHHHHHHHHHHccCCCC
Q 041942 413 GDVELGRLANKRLLNMRKDE 432 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~ 432 (498)
|+.+++.+.++++++.+|..
T Consensus 254 gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGG
T ss_pred CCHHHHHHHHHHHHcCCCCC
Confidence 78888888888888777663
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.08 Score=38.37 Aligned_cols=72 Identities=11% Similarity=0.041 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCC----CC--------hhHHHhhCChHHHHHHHHHHHccCCCCCch
Q 041942 368 PTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIE----PN--------IRHYGVHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 368 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
.+......+...+.+.|+++.|...++...+...-. ++ ...|.+.|+++.|...++++++++|+++.+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 345556677888899999999999999987732111 11 334448888888888888888888888766
Q ss_pred HHHH
Q 041942 436 YVLL 439 (498)
Q Consensus 436 ~~~l 439 (498)
...+
T Consensus 83 ~~n~ 86 (104)
T 2v5f_A 83 NGNL 86 (104)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 5544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.36 Score=35.95 Aligned_cols=84 Identities=7% Similarity=-0.109 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHH---HHHHHHHhHHhcCCCCC---------hhHHHhhCChHH
Q 041942 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEE---GKKYFKLMRDEYNIEPN---------IRHYGVHGDVEL 417 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~p~---------~~~y~~~g~~~~ 417 (498)
....+.+-|.+....|. |+..+--.+..++.+..+... ++.+++.+.+. -.|+ +..+.+.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHHH
Confidence 33444555555544443 666666666777777776555 66666666552 1132 222337777777
Q ss_pred HHHHHHHHHccCCCCCchH
Q 041942 418 GRLANKRLLNMRKDESGDY 436 (498)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~ 436 (498)
|++.++.+++.+|++..+.
T Consensus 93 A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhCCCCHHHH
Confidence 7777777777777775443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.46 E-value=2.9 Score=38.38 Aligned_cols=218 Identities=11% Similarity=0.005 Sum_probs=112.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCCchHHHHHHHHHHHhhc-CCcchhhHHH--
Q 041942 238 AMISGYVLCGMNKQALEMFEEMRSVGERPD-----DVTMLSLLTACADLGDLEVGKKVHCTLLDMTS-GVAKVLHGNA-- 309 (498)
Q Consensus 238 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~-- 309 (498)
.++..|...|++.+|..++.++.+.=-..| ...+..-+..|...+++.++...+.+...... +.+++.+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 467777888888888777777764211112 12344555667777888888877744433322 2233333211
Q ss_pred --HHHHHH-hcCCHHHHHHHHhcCC----C---C---ChhHHHHHHHHHHhCCCHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 041942 310 --LIDMYA-KCGSIERAIEVFLGMR----D---R---DVSTWSTLIGGLAFHGFAEESIAMFR-EMQRLKVRPTEITFVG 375 (498)
Q Consensus 310 --l~~~~~-~~~~~~~A~~~~~~~~----~---~---~~~~~~~l~~~~~~~~~~~~A~~~~~-~m~~~~~~p~~~~~~~ 375 (498)
-...+. ..+++..|...|-+.- + + +...|..+ .+..... ..+.-.++. +....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~~~-r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIMLGQ-SDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHTTC-GGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHcCC-HHHHHHHhccccccccCCccHHHHHH
Confidence 122344 5777777776654321 1 1 12233222 2222222 222222221 2111112355555666
Q ss_pred HHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHH--HHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHH
Q 041942 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELG--RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVE 453 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 453 (498)
++.++ ..+++.....+++..... +..|.........+-+. ...+.++. .|=.......++..+.- ..++++
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~~--l~~D~~l~~h~~~L~~~Ir~~~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE 334 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKKE--LAEDVIVQAHLGTLYDTMLEQNLCRII--EPYSRVQVAHVAESIQL--PMPQVE 334 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTTT--TTTSHHHHHHHHHHHHHHHHHHHHHHH--TTCSEEEHHHHHHHHTC--CHHHHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHH--HhcChHHHHHHHHHHHHHHHHHHHHHh--HhhceeeHHHHHHHHCc--CHHHHH
Confidence 66654 457887777777765442 34443221111111111 11222222 35566778888877754 688999
Q ss_pred HHHHHhhhCCC
Q 041942 454 KVRKLMDDSDI 464 (498)
Q Consensus 454 ~~~~~m~~~~~ 464 (498)
..+-+|...|.
T Consensus 335 ~~L~~lI~dg~ 345 (394)
T 3txn_A 335 KKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHCCC
Confidence 99999998886
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.98 E-value=1.4 Score=33.02 Aligned_cols=140 Identities=9% Similarity=0.007 Sum_probs=87.0
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHH
Q 041942 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322 (498)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (498)
+.-.|..++..+++.+..... +..-++-+|--....-+-+-..++++..-.-..+.+.. -...++.+|.+.|.
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~-NlKrVi~C~~~~n~--- 89 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT--- 89 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC---
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhh-cHHHHHHHHHHhcc---
Confidence 344577777777777776432 34445555555555555555555552221111111111 11334444444432
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCC
Q 041942 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402 (498)
Q Consensus 323 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 402 (498)
+....+..+..+..+|+-++-.+++..+.. +-+|++.....+..+|.+.|+..+|.+++.+.-+ .|+
T Consensus 90 -----------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~-kG~ 156 (172)
T 1wy6_A 90 -----------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK-KGE 156 (172)
T ss_dssp -----------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTC
T ss_pred -----------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH-hhh
Confidence 344556667788889999999999888654 3578888888899999999999999999988877 454
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=5.2 Score=39.36 Aligned_cols=72 Identities=15% Similarity=0.039 Sum_probs=33.5
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCC---CCChhhHHHHHHHHHhCCC
Q 041942 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP---KRDVVSWNAMISGYVLCGM 248 (498)
Q Consensus 176 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 248 (498)
..+..+.+.+++...+.++.. .+.+...--....+....|+..+|......+- .........++..+.+.|.
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCC
Confidence 344555566666666665555 33333333334455555666544444333221 1223344445555544443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.86 E-value=0.31 Score=37.81 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 369 (498)
+-.+.-+|.+.|++++|.+.++.+.+ +.|+
T Consensus 74 lY~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 74 VFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence 34455556677777777777777776 5564
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.51 Score=47.39 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=47.2
Q ss_pred hhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 411 VHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
..|+++-|..+.++++..-|.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus 349 ~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 349 NRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 67889999999999999999999999999999999999999999999984
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=93.65 E-value=2.6 Score=34.78 Aligned_cols=109 Identities=9% Similarity=0.040 Sum_probs=49.8
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 041942 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248 (498)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 248 (498)
++...-...+.++.+.++.+..-.+.+.+..++..+-...+.++.+.+..+....+...+.+++..+-...+.++.+.+.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34333334444444444433333333333344444444555555555554444444444445555555555555555554
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADL 281 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 281 (498)
.++...+..+.+. ++..+-...+.++...
T Consensus 173 -~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 173 -ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp -HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred -hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 3444444444432 3444444444444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.42 Score=44.23 Aligned_cols=124 Identities=11% Similarity=-0.040 Sum_probs=81.6
Q ss_pred ChhHHHHHHHHH---HhCCCHHHHHHHHHHHHHC--CC-CCCHH--HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 334 DVSTWSTLIGGL---AFHGFAEESIAMFREMQRL--KV-RPTEI--TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 334 ~~~~~~~l~~~~---~~~~~~~~A~~~~~~m~~~--~~-~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
|...|..++... ...|+.+.|...+.++... |- -++.. .|..-...... +.+-.+.. --
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~--------~~~~~a~~-----~~ 177 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALV--------EDKVLAHT-----AK 177 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHH--------HHHHHHHH-----HH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHH--------HHHHHHHH-----HH
Confidence 455566655433 3468899999999988873 31 12221 11111111111 11111111 01
Q ss_pred hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh-----CCCccCCce
Q 041942 406 IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD-----SDIKKQPGC 470 (498)
Q Consensus 406 ~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 470 (498)
...+...|+.+++...++.++..+|-+-..|..++.+|...|+..+|++.|++..+ .|+.|.+..
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 23445789999999999999999999999999999999999999999999998754 488876654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.62 E-value=1.6 Score=33.51 Aligned_cols=97 Identities=13% Similarity=0.164 Sum_probs=68.0
Q ss_pred CCChhhHHHHHHHHhccCCh------HHHHHHHHHHHhCCCCCCHh-h---HHHHHHHh---hcccchhhHHHHHHHHHH
Q 041942 67 EPDTFMYNTIIRGSAQSQNP------LDAVFLYTQMEKCSIKPNKF-T---FSFVLKAC---TRLLYRNMGFCVHGKIVK 133 (498)
Q Consensus 67 ~~~~~~~~~ll~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~-~---~~~li~~~---~~~~~~~~a~~~~~~~~~ 133 (498)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. . |..+---| ...++.+.|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55677888888888878888 8888888887764 566532 1 21111111 123788889999998877
Q ss_pred hCCCCChHHHHHHHHHHHhcCChhHHHHhhcc
Q 041942 134 YGFEFNRFVRNSLIYFHANCGDLNTASVLFDG 165 (498)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 165 (498)
.+-.. ..+|......-.++|++..|.+++..
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 64333 77788888888888888888888864
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=1.9 Score=39.81 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=64.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH----hcCCCCChhHHHhhC
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD----EYNIEPNIRHYGVHG 413 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~y~~~g 413 (498)
...++..+...|++.+|+..+..+.... +.+...+..++.++.+.|+..+|.+.|+.+.+ +.|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l----- 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL----- 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH-----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH-----
Confidence 3456777888999999999999888742 34788999999999999999999999988655 4799998554
Q ss_pred ChHHHHHHHHHHHccCCCC
Q 041942 414 DVELGRLANKRLLNMRKDE 432 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~ 432 (498)
.++++.++..+|..
T Consensus 248 -----~~l~~~il~~~~~~ 261 (388)
T 2ff4_A 248 -----RALNERILRQQPLD 261 (388)
T ss_dssp -----HHHHHHHHTTCCCC
T ss_pred -----HHHHHHHHcCCCCC
Confidence 45666666655543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=92.00 E-value=4.5 Score=33.27 Aligned_cols=123 Identities=14% Similarity=0.089 Sum_probs=64.3
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 041942 169 MDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGM 248 (498)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 248 (498)
++...-...+.++.+.+..+....+.+.+..++..+-...+.++.+.++.+....+.+.+..++...-...+.++...|.
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 33333334444444444443333333444455655666666666676765555555555556666666666666666665
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 296 (498)
.+ +...+..+.. .++..+-...+.++...+. ..+...+...+.
T Consensus 142 ~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 142 ER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp GG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 43 3334444432 3455555666666666665 334444434443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=91.64 E-value=4.7 Score=32.81 Aligned_cols=49 Identities=10% Similarity=0.040 Sum_probs=19.3
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 041942 199 VRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCG 247 (498)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 247 (498)
.++..+-...+.++.+.++.+....+...+..++...-...+.++...|
T Consensus 118 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3343333344444444444333333333333344444334444444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.54 E-value=8.4 Score=36.21 Aligned_cols=180 Identities=8% Similarity=0.011 Sum_probs=99.2
Q ss_pred CChHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhh--HHHHHHHHHhcCC
Q 041942 247 GMNKQALEMFEEMRS-----VGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLH--GNALIDMYAKCGS 319 (498)
Q Consensus 247 g~~~~a~~~~~~m~~-----~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 319 (498)
|++++|++.+..+.+ ............++..|...++++...+.+.-+....|......+ .+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 455666655544442 123334555666677777777777776666333333333222211 1112222222222
Q ss_pred --HHHHHHHHhcCCC---C-------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHhh
Q 041942 320 --IERAIEVFLGMRD---R-------DVSTWSTLIGGLAFHGFAEESIAMFREMQR--LKVRPT---EITFVGVLVACSH 382 (498)
Q Consensus 320 --~~~A~~~~~~~~~---~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~~p~---~~~~~~l~~~~~~ 382 (498)
.+.-..+.+.+.. . .......|...|...|++.+|..++.++.. .|.... ...+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2223334443331 1 123446688889999999999999998764 222222 3456667788999
Q ss_pred cCCHHHHHHHHHHhHHh-cCCC--CC---------hhHHHhhCChHHHHHHHHHHH
Q 041942 383 AGKVEEGKKYFKLMRDE-YNIE--PN---------IRHYGVHGDVELGRLANKRLL 426 (498)
Q Consensus 383 ~g~~~~a~~~~~~~~~~-~~~~--p~---------~~~y~~~g~~~~a~~~~~~~~ 426 (498)
.+++.+|..++.++... .... |+ +..+...+++.+|-+.|..+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999887531 1122 22 222225667777766666654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.92 E-value=8 Score=34.13 Aligned_cols=125 Identities=9% Similarity=-0.021 Sum_probs=69.7
Q ss_pred hhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHH----HHHHHhCCCCCCHhhHHHHHHHhhcccchh-
Q 041942 48 SVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFL----YTQMEKCSIKPNKFTFSFVLKACTRLLYRN- 122 (498)
Q Consensus 48 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~li~~~~~~~~~~- 122 (498)
|.+ .+++++|.+++.. -...+.+.|+...|-++ .+...+.+++++......++..+......+
T Consensus 43 y~~-~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~ 110 (312)
T 2wpv_A 43 YVR-SKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEP 110 (312)
T ss_dssp HHH-TTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCT
T ss_pred HHH-hcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 444 5566666665422 23334566776665553 455556677888877777777665532111
Q ss_pred hHHHHHHHHH----HhC--CCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhc
Q 041942 123 MGFCVHGKIV----KYG--FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARR 184 (498)
Q Consensus 123 ~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (498)
.-.++++.++ +.| ..-++.....+...|.+.|++.+|+..|-.....|...+..++.-+...
T Consensus 111 ~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 111 NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 1233333333 332 1235667777777777777777777766533333455565555555544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.82 E-value=1.8 Score=33.94 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMR 331 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~ 331 (498)
.+..+|.+.+++++|+.+++.+.
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHhcCC
Confidence 35566666666666666666664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.63 E-value=2.6 Score=45.31 Aligned_cols=184 Identities=13% Similarity=0.057 Sum_probs=107.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-------------------------
Q 041942 176 SLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK------------------------- 230 (498)
Q Consensus 176 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------- 230 (498)
.++..+...+.++.+..+..-.. .++...-.+..++...|++++|.+.|.+...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 45555666666666655544433 2222223445566667777777777765531
Q ss_pred -CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchh
Q 041942 231 -RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDD----VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVL 305 (498)
Q Consensus 231 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (498)
.-..-|..++..+-+.+.++.+.+.-+..++...+-+. ..|..+..++...|++++|...+ -.+.... .-..
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL-~~~pd~~--~r~~ 972 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL-MVLSTTP--LKKS 972 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH-HHHHHSS--SCHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH-HhCCCHH--HHHH
Confidence 01124677888888889988888877766543222221 25777888889999999998877 3333222 2234
Q ss_pred hHHHHHHHHHhc------------CCHHHHHHHHhcCC------CCChhHHHHHHHHHHhCCCHHHHHHH-HHHHHH
Q 041942 306 HGNALIDMYAKC------------GSIERAIEVFLGMR------DRDVSTWSTLIGGLAFHGFAEESIAM-FREMQR 363 (498)
Q Consensus 306 ~~~~l~~~~~~~------------~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~m~~ 363 (498)
....|+...+.. |..++..+++..-. ...+.-|..|-.-+..+|++..|..+ |+.+.+
T Consensus 973 cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 445555555543 44556666664321 12233466666667778888765554 555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.62 E-value=0.79 Score=46.04 Aligned_cols=63 Identities=11% Similarity=-0.019 Sum_probs=51.6
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC---------CHHHHHHHHHHhH
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAG---------KVEEGKKYFKLMR 397 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~ 397 (498)
+...=|..|.....+.+++++|.+.|+..+. .+-+...+..|++.|.+.+ +.+....+.-++.
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~--~RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~ 682 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIV--ARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKI 682 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHH
Confidence 3556799999999999999999999999998 4678899999999998877 6666665555544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.38 E-value=9 Score=33.82 Aligned_cols=183 Identities=11% Similarity=0.097 Sum_probs=109.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHH--
Q 041942 178 TAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM-- 255 (498)
Q Consensus 178 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-- 255 (498)
+......|++-+|.+.+ .++..=|.+.+++++|.+++.. -...+.+.|+...|-++
T Consensus 20 l~~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHH
Confidence 34456677887777764 4567778888888888887643 34455566776665554
Q ss_pred --HHHHHhCCCCCCHHHHHHHHHHHhccCCch-----HHHHHHHHHHHhhc--CCcchhhHHHHHHHHHhcCCHHHHHHH
Q 041942 256 --FEEMRSVGERPDDVTMLSLLTACADLGDLE-----VGKKVHCTLLDMTS--GVAKVLHGNALIDMYAKCGSIERAIEV 326 (498)
Q Consensus 256 --~~~m~~~g~~p~~~~~~~li~~~~~~~~~~-----~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (498)
++-..+.+++++......++..+......+ -..+.. .+..+.+ ..-++.....+...|.+.|++.+|...
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai-~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMN-NWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHH-HHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHH-HHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 555567788889888888888776543222 122222 2222222 223567778889999999999999988
Q ss_pred HhcCCCCChhHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 327 FLGMRDRDVSTWSTLIGGLAFH---GFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
|-.-...+...+..++--+... |...++--+ ..-.+--|.-.|+...|..+++...+
T Consensus 157 ~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf---------------~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 157 FMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF---------------FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH---------------HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHH---------------HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7632222344444444333322 222221111 11122344566889999988887765
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.12 E-value=9.8 Score=33.86 Aligned_cols=128 Identities=9% Similarity=-0.006 Sum_probs=64.6
Q ss_pred hhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHH----HHHHhCCCCCCHhhHHHHHHHhhcccchh
Q 041942 47 GSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLY----TQMEKCSIKPNKFTFSFVLKACTRLLYRN 122 (498)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 122 (498)
-|.+ .+++++|.+++-. -...+.+.|+...|-++- +-+.+.++++|......++..+.....-+
T Consensus 44 Ry~~-~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~ 111 (336)
T 3lpz_A 44 RYSK-QGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGE 111 (336)
T ss_dssp HHHH-TTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTC
T ss_pred HHHh-hcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCC
Confidence 3444 6666666665422 223345556665554443 44455667777777766766665443211
Q ss_pred -hHHHHHHHH----HHhC--CCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCC
Q 041942 123 -MGFCVHGKI----VKYG--FEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186 (498)
Q Consensus 123 -~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (498)
.-..+++.+ .+.| ..-++.....+...|.+.+++.+|+..|=-...+++..+..++.-+...+.
T Consensus 112 p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 112 PVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp HHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 112222222 2223 233555666666666666666666666532222233455555444444433
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=90.05 E-value=10 Score=34.79 Aligned_cols=58 Identities=10% Similarity=-0.020 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHhH
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPT-----EITFVGVLVACSHAGKVEEGKKYFKLMR 397 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 397 (498)
.++..|...|++.+|.+++.++.+.=-+.| ...+..-++.|...+++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345555555555555555555543100111 1122333344455555555555554443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.24 E-value=15 Score=34.58 Aligned_cols=91 Identities=10% Similarity=0.123 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC----C-----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCC--HHH
Q 041942 308 NALIDMYAKCGSIERAIEVFLGMRD----R-----DVSTWSTLIGGLAFHGFAEESIAMFREMQR----LKVRPT--EIT 372 (498)
Q Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~----~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p~--~~~ 372 (498)
..|...|...|++.+|.+++..+.. . -+..+...++.|...+++.+|..+++++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4577888888888888888877641 1 134667777888888899888888887642 221222 234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 373 FVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+...+..+...+++.+|.+.|.++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45556677778888888888777755
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.88 E-value=1.7 Score=34.05 Aligned_cols=121 Identities=8% Similarity=-0.020 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChh
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLK-VRPT-------EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIR 407 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 407 (498)
..+-.-+..+...|.++.|+-+...+.... -.|+ ..++..+..++...|++.+|...|++..+....-+...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344455777888999999998887765421 2233 13566677889999999999999999765222211100
Q ss_pred -HHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 408 -HYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 408 -~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
.+...+. ......-.. .+.+.+....++.+|.+.|++++|+.+++.+..
T Consensus 101 s~~~~~~~----~ss~p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 101 KVRPSTGN----SASTPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp --------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred Cccccccc----cCCCccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 0000000 000000001 122345677899999999999999999988643
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.07 E-value=19 Score=37.14 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=21.2
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHhccCCchHHHHHH
Q 041942 243 YVLCGMNKQALEMFEEMRSVGERPDDVTML---SLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~---~li~~~~~~~~~~~a~~~~ 291 (498)
+...|+.+.+..+++.+.... .|. .-|. ++.-+|+..|+.....+++
T Consensus 534 ll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL 583 (963)
T 4ady_A 534 LINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLL 583 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred hhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 334555555555555555421 111 1111 2233455555555555555
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.71 E-value=6.4 Score=27.57 Aligned_cols=86 Identities=10% Similarity=-0.057 Sum_probs=62.8
Q ss_pred hhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH
Q 041942 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME 97 (498)
Q Consensus 18 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 97 (498)
.+.|..+-+.+...+- -..++...+.+ +.. .|++++|..+.+....||...|-.|-. .+.|-.+++..-+..+.
T Consensus 22 HqEA~tIAdwL~~~~~-~E~v~lIR~sS--LmN-rG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ-DEAARLIRISS--LAN-QGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHH--HHH-TTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHH--HHc-chhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 4678888888888776 55555555554 444 799999999999999999999877655 46777888887777887
Q ss_pred hCCCCCCHhhHHH
Q 041942 98 KCSIKPNKFTFSF 110 (498)
Q Consensus 98 ~~~~~p~~~~~~~ 110 (498)
..| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.30 E-value=33 Score=35.44 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=25.8
Q ss_pred HHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 041942 58 AHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEK 98 (498)
Q Consensus 58 A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 98 (498)
+.++|..+..| -|..+++...+.++.+.+.++|+.+.+
T Consensus 221 l~~Iy~k~~~~---dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 221 SFDFLMNMPNC---DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHSSSC---CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCch---hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555554333 356667777778888888888888764
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.25 E-value=6.5 Score=33.60 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=62.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHH-hhCChHHHHHHH
Q 041942 344 GLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYG-VHGDVELGRLAN 422 (498)
Q Consensus 344 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~-~~g~~~~a~~~~ 422 (498)
...+.|+.++|++.+..-++.. +-|...-..|++.++-.|++++|.+-++.+.+ +.|+...-. ...+.-.|+..-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHHHHH
Confidence 3456677777777777766642 22455555566777777777777777777766 455522111 112222333333
Q ss_pred HHHHcc--C---CCCCc-hHHHHHHHHHh--CCCchHHHHHHHHhhhC
Q 041942 423 KRLLNM--R---KDESG-DYVLLSNIYAS--RGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 423 ~~~~~~--~---~~~~~-~~~~l~~~~~~--~g~~~~A~~~~~~m~~~ 462 (498)
..+..- . +..+. -...|+.++.. .|+.++|.++-.++.+.
T Consensus 82 ~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 82 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 333321 1 12222 33344444443 48888888888887654
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.25 E-value=6.8 Score=27.47 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=60.0
Q ss_pred hhhhHHHHHHHHHhcCCcChHHHHHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH
Q 041942 18 LRTLKQIQALVTINGFNSDSSALRELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQME 97 (498)
Q Consensus 18 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 97 (498)
.+.|..+-+.+...|- -..++...+.+ +.. .|++++|+.+.+....||...|-.|-. .+.|-.+++..-+..+.
T Consensus 23 HqEA~tIAdwL~~~~~-~E~v~lIR~sS--LmN-rG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE-EEAVQLIRLSS--LMN-RGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHH--HHH-TTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHH--HHc-chhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 3677888888887776 55555555444 344 699999999999888999888877655 35677777777777777
Q ss_pred hCCCCCCHhhHHH
Q 041942 98 KCSIKPNKFTFSF 110 (498)
Q Consensus 98 ~~~~~p~~~~~~~ 110 (498)
..| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 766 555444443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.13 E-value=7.1 Score=27.53 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHH
Q 041942 85 NPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147 (498)
Q Consensus 85 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 147 (498)
+.-+..+-++.+....+.|++......+++|-|.+++..|.++++-++..- .....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 334555666666666667777777777777777777777777777665432 22334455444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=85.67 E-value=3.4 Score=30.75 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTE 370 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 370 (498)
.-.|.-++.+.|++++|.+.++.+.+ +.|+.
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCC
Confidence 34456677788888888888888888 56753
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.33 E-value=5 Score=28.30 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHh
Q 041942 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDE 399 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 399 (498)
+.=+..+-++.+...++.|++......+++|.+.+++..|.++++-++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34466667777777788899999999999999999999999999888774
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.14 E-value=20 Score=31.87 Aligned_cols=183 Identities=11% Similarity=0.091 Sum_probs=107.2
Q ss_pred HHHHhcCCh---HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHH
Q 041942 179 AGYARRGEL---SMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEM 255 (498)
Q Consensus 179 ~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 255 (498)
......|++ -+|.+.+ .++..=|.+.+++++|.+++-. -...+.+.|+...+-++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHH
Confidence 345567777 6776654 4556668888888888887643 33445566776555444
Q ss_pred ----HHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHH-HHH---HHHHhhc--CCcchhhHHHHHHHHHhcCCHHHHHH
Q 041942 256 ----FEEMRSVGERPDDVTMLSLLTACADLGDLEVGKK-VHC---TLLDMTS--GVAKVLHGNALIDMYAKCGSIERAIE 325 (498)
Q Consensus 256 ----~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~-~~~---~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (498)
++-..+.++++|......++..+.....-+-.+. +.+ .+..+.+ ..-++.....+...|.+.+++.+|..
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 3555567888888888888887766554221111 111 1222222 33456666788899999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 326 VFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.|-.-.++.+..|..++--+...+...++ +... .-.+--|.-.++...|..+++...+
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88432222335554444333333321111 1112 2223345566788888887766654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.94 E-value=8 Score=27.09 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=60.9
Q ss_pred CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
...++|..|- +.+...+. ...++ -+-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++
T Consensus 20 H~HqEA~tIA-dwL~~~~~-~E~v~-lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIA-EWLERLGQ-DEAAR-LIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHH-HHHHHTTC-HHHHH-HHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHhCCc-HHHHH-HHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456777776 55555543 22222 223445678899999999999999999999987765 4678888888888888
Q ss_pred HHCCCCCCHHHHHH
Q 041942 362 QRLKVRPTEITFVG 375 (498)
Q Consensus 362 ~~~~~~p~~~~~~~ 375 (498)
..+| .|....|..
T Consensus 95 a~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 95 GGSS-DPALADFAA 107 (115)
T ss_dssp HTCS-SHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 8776 465555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.44 E-value=27 Score=37.43 Aligned_cols=148 Identities=9% Similarity=0.002 Sum_probs=103.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhC----C----------------
Q 041942 204 SWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV----G---------------- 263 (498)
Q Consensus 204 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g---------------- 263 (498)
....++..+.+.+..+-+.++...... +...-..+..+|...|++++|...|.+.... .
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 344567778888999888887665544 5555567788999999999999999764210 0
Q ss_pred --CCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc---hhhHHHHHHHHHhcCCHHHHHHHHhcCCCC--Chh
Q 041942 264 --ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK---VLHGNALIDMYAKCGSIERAIEVFLGMRDR--DVS 336 (498)
Q Consensus 264 --~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~ 336 (498)
...-..-|..++..+.+.+.++.+.++-+..+...+...+ ...|..+.+.+...|++++|...+-.+..+ -..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~ 972 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKS 972 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHH
Confidence 0112346788888999999999999887555544332221 236788899999999999999999766532 234
Q ss_pred HHHHHHHHHHhCCCHH
Q 041942 337 TWSTLIGGLAFHGFAE 352 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~ 352 (498)
....|+..++..|..+
T Consensus 973 cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhCCChh
Confidence 6666777777666543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.24 E-value=8.7 Score=26.95 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=59.3
Q ss_pred CCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 041942 282 GDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREM 361 (498)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 361 (498)
...++|..|- +.+...+. ...++ -+-+..+...|++++|..+.+...-||...|-+|-.. +.|-.+++...+.++
T Consensus 21 H~HqEA~tIA-dwL~~~~~-~E~v~-lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 21 HYHEEANCIA-EWLHLKGE-EEAVQ-LIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TCHHHHHHHH-HHHHHTTC-HHHHH-HHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHhCCc-HHHHH-HHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3456777776 55554443 22222 2234456778999999999999999999988877654 567778888888788
Q ss_pred HHCCCCCCHHHHHH
Q 041942 362 QRLKVRPTEITFVG 375 (498)
Q Consensus 362 ~~~~~~p~~~~~~~ 375 (498)
..+| .|....|..
T Consensus 96 a~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 96 ARSQ-DPRIQTFVN 108 (116)
T ss_dssp TTCC-CHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 7766 455555543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.03 E-value=12 Score=28.40 Aligned_cols=66 Identities=9% Similarity=0.004 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhHHhcCCCCC---------hhHHHhhCChHHHHHHHHHHHccCCCCCc
Q 041942 367 RPTEITFVGVLVACSHAGK---VEEGKKYFKLMRDEYNIEPN---------IRHYGVHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 367 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~---------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
.|+..+--.+..++.+..+ ..+++.+++.+.+. .|+ +..|.+.|++++|+++.+.+++.+|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 4666665566666666654 34566677776652 342 33333888888888888888888888754
Q ss_pred h
Q 041942 435 D 435 (498)
Q Consensus 435 ~ 435 (498)
+
T Consensus 113 A 113 (144)
T 1y8m_A 113 V 113 (144)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.13 E-value=7.3 Score=29.15 Aligned_cols=65 Identities=9% Similarity=0.018 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhHHhcCCCCC---------hhHHHhhCChHHHHHHHHHHHccCCCCCc
Q 041942 367 RPTEITFVGVLVACSHAGK---VEEGKKYFKLMRDEYNIEPN---------IRHYGVHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 367 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~---------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
.|+..+--.+..++.+..+ ..+++.+++.+.+. .|. +..+.+.|++++|+++.+.+++..|++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4555554455555555543 33456666665552 232 22222666677777777777767776643
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=82.22 E-value=18 Score=29.14 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 041942 139 NRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEM 218 (498)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 218 (498)
+..+....+..+...|..+....+.+.+..++...-...+.++.+.+..+..-.+.+.+..++..+-...+.++.+.++.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence 33333333444444444333333333333444444444555555555554444444444456666666666677777766
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc
Q 041942 219 EKANELFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDL 284 (498)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 284 (498)
+....+...+..++...-...+.++...+..+ +...+..+.. .++..+-...+.++...|..
T Consensus 107 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 107 RAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 55555555566666666666666666666543 3334444432 34555555666666666553
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=81.40 E-value=43 Score=32.91 Aligned_cols=265 Identities=8% Similarity=-0.046 Sum_probs=125.0
Q ss_pred hHHHHHHHHHhcCCcChHHH-HHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhC
Q 041942 21 LKQIQALVTINGFNSDSSAL-RELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC 99 (498)
Q Consensus 21 a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 99 (498)
..++...+.++.-.|-.... +.-+. .+.+ .+++......+.. ++.+...-.....+....|+..+|......+-..
T Consensus 55 ~~ev~~Fl~~~~~~p~~~~Lr~~~l~-~l~~-~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 55 AVTVTNFVRANPTLPPARTLQSRFVN-ELAR-REDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH-HHHH-TTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHH-HHHh-CCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 34566666665333332222 33344 5666 7788888887766 4334444445666677778877777777777665
Q ss_pred CCCCCHhhHHHHHHHhhcccchhh--HHHHHHHHHHhC-----------CCCChH-HHHHHHHHHHhcCChhHHHHhhcc
Q 041942 100 SIKPNKFTFSFVLKACTRLLYRNM--GFCVHGKIVKYG-----------FEFNRF-VRNSLIYFHANCGDLNTASVLFDG 165 (498)
Q Consensus 100 ~~~p~~~~~~~li~~~~~~~~~~~--a~~~~~~~~~~~-----------~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 165 (498)
| ......+..++..+.+.|.+.. .++=+..+...| ++++.. ....++..+.. ...+......
T Consensus 132 ~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~ 207 (618)
T 1qsa_A 132 G-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART 207 (618)
T ss_dssp S-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH
T ss_pred C-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhc
Confidence 5 3445556666666665554332 222222222222 111111 11122222111 1122222111
Q ss_pred CCCCCcc---hHHHHHHHHHhcCChHHHHHHHhcCC---CCCcc----hHHHHHHHHHhcCChHHHHHHHhhCC--CCCh
Q 041942 166 DAKMDVV---AWSSLTAGYARRGELSMARSLFDEMP---VRDLV----SWNVMITGYAKQGEMEKANELFNEVP--KRDV 233 (498)
Q Consensus 166 ~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~ 233 (498)
. .++.. .+...+.-+.+ .+.+.|..++.... ..+.. .+..+.......+...++...+.... ..+.
T Consensus 208 ~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (618)
T 1qsa_A 208 T-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST 285 (618)
T ss_dssp S-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH
T ss_pred c-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh
Confidence 1 11111 11111222223 36677777776553 12222 12222222233342444444444422 1222
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 041942 234 VSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLL 295 (498)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 295 (498)
....-.+....+.|+++.|...|..|..... ......--+..++...|+.++|..+|....
T Consensus 286 ~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 286 SLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2233333444566888888888877764321 123323344556667788888888885544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.77 E-value=11 Score=28.63 Aligned_cols=51 Identities=12% Similarity=0.244 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 352 EESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 352 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
.+++.+++++.+.+..-.....-.|.-++.+.|++++|.++.+.+.+ +.|+
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---~eP~ 109 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERN 109 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---TCCC
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh---cCCC
Confidence 45555666655532111223333444566666666666666666655 4554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=80.18 E-value=7.2 Score=29.18 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 352 EESIAMFREMQRLKVRP--TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 352 ~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
.+++.++++..+.+ | ....+-.|.-++.+.|++++|.+..+.+.+ +.|+
T Consensus 60 ~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~---~eP~ 110 (134)
T 3o48_A 60 RLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERN 110 (134)
T ss_dssp HHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCTT
T ss_pred HHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hCCC
Confidence 45566666655533 3 133344445566666666666666666655 5554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 498 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.1 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.03 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.01 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.99 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.94 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.89 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.87 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.75 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.65 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.63 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.61 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.59 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.57 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.49 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.41 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.33 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.22 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.19 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.14 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.13 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.12 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.08 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.07 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.01 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.01 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.99 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.96 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.92 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.87 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.87 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.82 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.73 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.67 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.66 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.6 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.57 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.41 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.33 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.2 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.96 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.8 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.58 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.35 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.96 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.75 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.72 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.64 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.38 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.34 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.57 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.72 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.96 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.2e-21 Score=183.35 Aligned_cols=362 Identities=12% Similarity=0.080 Sum_probs=247.8
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChh
Q 041942 78 RGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLN 157 (498)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 157 (498)
..+.+.|++++|++.|+++.+.. +-+...+..+..++.+.|++++|...++++++.. +-+..++..+..+|...|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 34556677777777777776542 2245566666666777777777777777777654 334566777777777777777
Q ss_pred HHHHhhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-
Q 041942 158 TASVLFDGDAK---MDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK- 230 (498)
Q Consensus 158 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 230 (498)
+|...+..... .+...+..........+....+........ .................+....+...+.....
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 77777665433 222233333333334444444333333322 33334444455555666666666666655442
Q ss_pred --CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHH
Q 041942 231 --RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGN 308 (498)
Q Consensus 231 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (498)
.+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++....... .+...+.
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~ 241 (388)
T d1w3ba_ 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP--NHAVVHG 241 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT--TCHHHHH
T ss_pred CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh--hHHHHHH
Confidence 345667777788888888888888888877653 33556777788888888888888888855544332 3445566
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK 385 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 385 (498)
.+...+.+.|++++|...|++.. ..+..+|..+...+...|++++|.+.++...... +.+...+..+...+.+.|+
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCC
Confidence 67788888888888888887654 2356788888888888899999998888887742 4456777788888888889
Q ss_pred HHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCC
Q 041942 386 VEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGE 448 (498)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 448 (498)
+++|.+.+++..+ +.|+ ...|...|++++|...|+++++++|+++.+|..|+.+|.+.|+
T Consensus 321 ~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 321 IEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999888888866 5666 3344588899999999999999999999999999999888775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.5e-20 Score=175.70 Aligned_cols=346 Identities=12% Similarity=0.063 Sum_probs=279.8
Q ss_pred HHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCC---CCcchHHHHHHHHHhcCChH
Q 041942 112 LKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAK---MDVVAWSSLTAGYARRGELS 188 (498)
Q Consensus 112 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 188 (498)
...+.+.|++++|.+.++++.+.. +-+..++..+..+|...|++++|...|++..+ .+..+|..+..++.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 345678899999999999999875 44678899999999999999999999987653 45668889999999999999
Q ss_pred HHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 041942 189 MARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVP---KRDVVSWNAMISGYVLCGMNKQALEMFEEMRSV 262 (498)
Q Consensus 189 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 262 (498)
+|+..+.... +.+..............+....+........ .................+....+...+......
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 9999999887 3344445555555555565555554444332 244555666677777888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHH
Q 041942 263 GERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD---RDVSTWS 339 (498)
Q Consensus 263 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~ 339 (498)
. +-+...+..+...+...|+++.|...+++.+...+ .+...+..+...+...|++++|...+++... .+...+.
T Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1w3ba_ 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc--ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence 3 34567788888899999999999999976665542 3456777889999999999999999987653 4677888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhC
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHG 413 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g 413 (498)
.+...+...|++++|+..|+++.+ +.|+ ..++..+...+...|++++|.+.++......+..+. ...|...|
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence 899999999999999999999998 4564 778888999999999999999999998873222222 44555999
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 414 DVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
++++|...|+++++++|+++.++..++.+|.+.|++++|++.|++..+..
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=6.5e-14 Score=126.87 Aligned_cols=219 Identities=16% Similarity=0.185 Sum_probs=121.5
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCh
Q 041942 176 SLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMN 249 (498)
Q Consensus 176 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 249 (498)
.....+.+.|++++|+..|+++. +.+...|..+..++...|++++|...|.+..+ .+...|..+...|...|++
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 45556777888888888887776 34456777778888888888888888877653 3556777778888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH----------------HHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 041942 250 KQALEMFEEMRSVGERPDDVTM----------------LSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313 (498)
Q Consensus 250 ~~a~~~~~~m~~~g~~p~~~~~----------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (498)
++|.+.+++..... |+.... ...+..+...+.+.++...+.+.+...+...+...+..+...
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 88888888877542 221110 001111122233444444443443333333334444444455
Q ss_pred HHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 041942 314 YAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEG 389 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 389 (498)
+...|++++|...|++... .+..+|..+..+|...|++++|++.|++.++ +.|+ ..++..+..+|.+.|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHH--HhhccHHHHHHHHHHHHHCCCHHHH
Confidence 5555555555555544321 2344455555555555555555555555544 2232 33444444555555555555
Q ss_pred HHHHHHhHH
Q 041942 390 KKYFKLMRD 398 (498)
Q Consensus 390 ~~~~~~~~~ 398 (498)
++.|++.++
T Consensus 260 ~~~~~~al~ 268 (323)
T d1fcha_ 260 VEHFLEALN 268 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.3e-13 Score=124.93 Aligned_cols=233 Identities=12% Similarity=0.079 Sum_probs=139.1
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 041942 207 VMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGD 283 (498)
Q Consensus 207 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 283 (498)
.....+.+.|++++|...|+++.+ .+..+|..+..+|...|++++|...+.+..+.. +-+...+..+..++...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 344556666777777777666543 234566666666666677777776666666543 2244555666666666666
Q ss_pred chHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 041942 284 LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQR 363 (498)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 363 (498)
+++|...++..+.................. ..+.......+..+...+.+.+|.+.+.+..+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAG------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhh------------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 666666664444332211111100000000 00011111122233344556677777777665
Q ss_pred CCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCc
Q 041942 364 LKV-RPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESG 434 (498)
Q Consensus 364 ~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (498)
... .++...+..+...+...|++++|...+++... ..|+ ...|...|++++|...|+++++++|+++.
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhcccccccc---cccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 321 12355666677777777888888888877766 3444 33344778888888888888888888888
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhhh
Q 041942 435 DYVLLSNIYASRGEWNRVEKVRKLMDD 461 (498)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 461 (498)
+|..++.+|.+.|++++|++.|++..+
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888888888888876
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=3.2e-09 Score=96.37 Aligned_cols=194 Identities=10% Similarity=0.015 Sum_probs=109.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHh----CCCCCC---H
Q 041942 205 WNVMITGYAKQGEMEKANELFNEVPK-----RD----VVSWNAMISGYVLCGMNKQALEMFEEMRS----VGERPD---D 268 (498)
Q Consensus 205 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g~~p~---~ 268 (498)
+..+..++...|++++|...|++..+ ++ ...+..+...+...|++..+...+..... .+.... .
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~ 133 (366)
T d1hz4a_ 54 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 133 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHH
Confidence 34445555555666655555554432 11 12344555666677777777776665442 111111 1
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc---chhhHHHHHHHHHhcCCHHHHHHHHhcCC-------CC---Ch
Q 041942 269 VTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA---KVLHGNALIDMYAKCGSIERAIEVFLGMR-------DR---DV 335 (498)
Q Consensus 269 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~---~~ 335 (498)
..+..+...+...|+++.+...+........... ....+..+...+...++...+...+.... .. ..
T Consensus 134 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 213 (366)
T d1hz4a_ 134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 213 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 2344455666677777777777754444332211 22233344455556666666655544322 11 12
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT---EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
..+..+...+...|++++|...+++........+ ...+..+..++...|++++|...++++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 279 (366)
T d1hz4a_ 214 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 279 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666777788888888888887665322222 33455566778888888888888877654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=9.2e-09 Score=93.24 Aligned_cols=266 Identities=10% Similarity=-0.036 Sum_probs=161.7
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCC----hHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCC
Q 041942 111 VLKACTRLLYRNMGFCVHGKIVKYGFEFN----RFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGE 186 (498)
Q Consensus 111 li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (498)
....+...|++++|.+++++.++.....+ ...+..+..+|...|++++|...|+..... ....++
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~-----------~~~~~~ 86 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM-----------ARQHDV 86 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------HHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------HHhhcc
Confidence 33445667777777777777776432211 124455566666666666666665543210 000000
Q ss_pred hHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCC-------CC----ChhhHHHHHHHHHhCCChHHHHHH
Q 041942 187 LSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVP-------KR----DVVSWNAMISGYVLCGMNKQALEM 255 (498)
Q Consensus 187 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~----~~~~~~~l~~~~~~~g~~~~a~~~ 255 (498)
. ......+..+...+...|++..+...+.... .+ ....+..+...+...|+++.+...
T Consensus 87 ~-----------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~ 155 (366)
T d1hz4a_ 87 W-----------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 155 (366)
T ss_dssp H-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred h-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHH
Confidence 0 0001122333444455555555554444332 11 112455566777888888888888
Q ss_pred HHHHHhCC----CCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCc-----chhhHHHHHHHHHhcCCHHHHHHH
Q 041942 256 FEEMRSVG----ERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVA-----KVLHGNALIDMYAKCGSIERAIEV 326 (498)
Q Consensus 256 ~~~m~~~g----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~ 326 (498)
+....... .......+......+...++...+...+........... ....+..+...+...|++++|...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 235 (366)
T d1hz4a_ 156 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 235 (366)
T ss_dssp HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHH
Confidence 87776432 222334555566667777888888777744443322211 123345566778889999999999
Q ss_pred HhcCCCC-------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHH
Q 041942 327 FLGMRDR-------DVSTWSTLIGGLAFHGFAEESIAMFREMQR----LKVRPT-EITFVGVLVACSHAGKVEEGKKYFK 394 (498)
Q Consensus 327 ~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 394 (498)
++..... ....+..+...+...|++++|...++++.. .+..|+ ..++..+...+.+.|++++|.+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 315 (366)
T d1hz4a_ 236 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 315 (366)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9877642 234566788899999999999999998764 344454 4567777889999999999999998
Q ss_pred HhHH
Q 041942 395 LMRD 398 (498)
Q Consensus 395 ~~~~ 398 (498)
+..+
T Consensus 316 ~Al~ 319 (366)
T d1hz4a_ 316 DALK 319 (366)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8766
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=3.4e-09 Score=91.71 Aligned_cols=191 Identities=12% Similarity=0.025 Sum_probs=109.1
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHH
Q 041942 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLA 346 (498)
Q Consensus 270 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 346 (498)
++..+..+|.+.|++++|...|++.+...+ .++.++..+..+|.+.|++++|...|+++.+ | +..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCC--CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence 444555566666666666666655554432 3345556666667777777777777666552 2 4556667777777
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCCh---hHHH----hhCChHHH
Q 041942 347 FHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNI---RHYG----VHGDVELG 418 (498)
Q Consensus 347 ~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~y~----~~g~~~~a 418 (498)
..|++++|...+++.++. .|+ ......+..++.+.+..+.+..+...........+.. ..+. ..+..+.+
T Consensus 117 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERL 194 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 777777777777777763 343 3333333444455555555544444444411111111 1111 12223333
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
...+.......|....+|..++..|...|++++|+..|++..+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 3334444444455566788888888888888888888888876543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1e-08 Score=91.27 Aligned_cols=203 Identities=8% Similarity=0.058 Sum_probs=109.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CchHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 041942 235 SWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG-DLEVGKKVHCTLLDMTSGVAKVLHGNALIDM 313 (498)
Q Consensus 235 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (498)
.|+.+...+.+.+.+++|+.+++++++.. +-+...|+....++...| ++++|...++..+...+ -+...|..+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p--~~~~a~~~~~~~ 121 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH--hhhhHHHHHhHH
Confidence 34445555555666666666666666542 223344555555555544 35666666644444332 334455555556
Q ss_pred HHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCC----
Q 041942 314 YAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGK---- 385 (498)
Q Consensus 314 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~---- 385 (498)
+.+.|++++|+..++++.+ .+...|..+...+...|++++|++.++++++ +.| +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccchh
Confidence 6666666666666665542 3456666666666666666777777666666 334 34455544444443333
Q ss_pred --HHHHHHHHHHhHHhcCCCCC-hhHHH------hhCChHHHHHHHHHHHccCCCCC--chHHHHHHHHHh
Q 041942 386 --VEEGKKYFKLMRDEYNIEPN-IRHYG------VHGDVELGRLANKRLLNMRKDES--GDYVLLSNIYAS 445 (498)
Q Consensus 386 --~~~a~~~~~~~~~~~~~~p~-~~~y~------~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 445 (498)
+++|.+.+.++.+ ..|+ ...|. .....+++...++.++++.|... ..+..++.+|..
T Consensus 200 ~~~~~ai~~~~~al~---~~P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 200 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHH---hCCCchHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 4566666666555 3343 11111 23335566666666666666543 345556666644
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.99 E-value=2.3e-08 Score=88.77 Aligned_cols=177 Identities=12% Similarity=0.043 Sum_probs=107.7
Q ss_pred chHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C-hhHHHHHHHHHHhCCCHHHHHHHHH
Q 041942 284 LEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRD--R-D-VSTWSTLIGGLAFHGFAEESIAMFR 359 (498)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (498)
.++|..+|+..+.. ..+.+...+...+..+.+.|+++.|..+|+++.+ | + ...|...+..+.+.|+.+.|.++|+
T Consensus 80 ~~~a~~i~~ral~~-~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 80 SDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45566666443322 2233445556666666777777777777766543 2 2 2356677777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HhhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCC
Q 041942 360 EMQRLKVRPTEITFVGVLVA-CSHAGKVEEGKKYFKLMRDEYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDES 433 (498)
Q Consensus 360 ~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~ 433 (498)
++.+.+ +.+...|...... +...|+.+.|..+|+.+.+..+..|+ +......|++++|+.+|++++...|.++
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 777643 1223333333322 23346777777777777764333333 2222367777777777777777665443
Q ss_pred ----chHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 434 ----GDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 434 ----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
..|..++......|+.+.+.++++++.+.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36777777777788888888888877653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=7.9e-09 Score=91.96 Aligned_cols=211 Identities=13% Similarity=0.038 Sum_probs=108.7
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhccc-chhhHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 041942 72 MYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLL-YRNMGFCVHGKIVKYGFEFNRFVRNSLIYFH 150 (498)
Q Consensus 72 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (498)
.|+.+...+.+.+..++|+++++++.+.. +-+...|+....++...| ++++|...++..++.. +-+..+|..+..++
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 45555555666667777777777776632 223445555555555544 3666666666666653 23445555555555
Q ss_pred HhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC
Q 041942 151 ANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPK 230 (498)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 230 (498)
.+.|++++|...+++..+.+ +.+...|..+..++...|++++|...++.+.+
T Consensus 123 ~~l~~~~eAl~~~~kal~~d----------------------------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~ 174 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD----------------------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 174 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HhhccHHHHHHHHhhhhhhh----------------------------hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555555554433211 23334444444455555555555555554442
Q ss_pred ---CChhhHHHHHHHHHhCCC------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCC
Q 041942 231 ---RDVVSWNAMISGYVLCGM------NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGV 301 (498)
Q Consensus 231 ---~~~~~~~~l~~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 301 (498)
.+...|+.+...+.+.+. +++|+..+.+.++.. +.+...|..+...+.. ...+++...++.........
T Consensus 175 ~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~ 252 (315)
T d2h6fa1 175 EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSH 252 (315)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTC
T ss_pred HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCc
Confidence 234445544444444433 466777777766553 3355555555544443 33466666664444433333
Q ss_pred cchhhHHHHHHHH
Q 041942 302 AKVLHGNALIDMY 314 (498)
Q Consensus 302 ~~~~~~~~l~~~~ 314 (498)
.+...+..++..|
T Consensus 253 ~~~~~~~~l~~~y 265 (315)
T d2h6fa1 253 SSPYLIAFLVDIY 265 (315)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3344444444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.94 E-value=5.7e-10 Score=100.84 Aligned_cols=219 Identities=6% Similarity=-0.118 Sum_probs=91.8
Q ss_pred hHHHHHHHhhCCC---CChhhHHHHHHHHHhCC--ChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhccCCchHHHHHH
Q 041942 218 MEKANELFNEVPK---RDVVSWNAMISGYVLCG--MNKQALEMFEEMRSVGERPDDVTML-SLLTACADLGDLEVGKKVH 291 (498)
Q Consensus 218 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~~~~~~a~~~~ 291 (498)
+++|..+++.+.+ .+...|..+..++...+ ++++|...+.++.+.. +++...+. .....+...+..+.|...+
T Consensus 89 ~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~ 167 (334)
T d1dcea1 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHH
Confidence 4444444444332 23334444443433333 2445555555544432 11222222 2223334445555555544
Q ss_pred HHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 041942 292 CTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371 (498)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 371 (498)
+..+...+ .+...|..+...+.+.|++++|...++...+-.+... .....+...+..+++...+....... +++..
T Consensus 168 ~~~i~~~p--~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~ 243 (334)
T d1dcea1 168 DSLITRNF--SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLF 243 (334)
T ss_dssp HTTTTTTC--CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSS
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHHHhC-cchhh
Confidence 33332221 2333444444444445544444333333222111111 11122233344444555555544422 12233
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
.+..+...+...|+.++|...+.+..+ ..|+ ...|...|++++|...++++++++|.+...|..|...+
T Consensus 244 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 244 RCELSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320 (334)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 333444444445555555555554433 3333 22233555555555566666666665555555555544
Q ss_pred H
Q 041942 444 A 444 (498)
Q Consensus 444 ~ 444 (498)
.
T Consensus 321 ~ 321 (334)
T d1dcea1 321 L 321 (334)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=4e-09 Score=95.10 Aligned_cols=211 Identities=10% Similarity=-0.078 Sum_probs=155.8
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--CchHHHHHHHHHHHhhcCCcchhhH-HHHHHHHHhcCCHH
Q 041942 245 LCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLG--DLEVGKKVHCTLLDMTSGVAKVLHG-NALIDMYAKCGSIE 321 (498)
Q Consensus 245 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~ 321 (498)
..|++++|+..++...+.. +-+...+..+..++...+ ++++|...+...+.... .+...+ ......+...+..+
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE--RNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc--hhhhhhhhHHHHHHHhccccH
Confidence 3455788999999988764 335566666666665554 57899999866666543 233333 34456777889999
Q ss_pred HHHHHHhcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 322 RAIEVFLGMRDR---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 322 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+|+..++.+.+. +...|+.+..++...|++++|...+.+..+ +.|+. ..+...+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKE---LELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHH---HHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999999988753 677899999999999999888766655444 22322 2233445566777788888887766
Q ss_pred hcCCCCC-----hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 399 EYNIEPN-----IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 399 ~~~~~p~-----~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
.....+. ...+...++.++|...+.++++.+|.+..+|..++.+|.+.|++++|++.++++.+..
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 237 GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 2222221 5566688999999999999999999999999999999999999999999999998754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=7.4e-08 Score=85.38 Aligned_cols=183 Identities=11% Similarity=0.061 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHh
Q 041942 249 NKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFL 328 (498)
Q Consensus 249 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (498)
.++|..+|++..+...+.+...+...+......|+++.|..+|+..+...+ .....+|..++....+.|+++.|.++|+
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~-~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 355666666666543344445555556666666666666666644443221 1123345566666666667777777766
Q ss_pred cCCCC---ChhHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCC
Q 041942 329 GMRDR---DVSTWSTLIGG-LAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP 404 (498)
Q Consensus 329 ~~~~~---~~~~~~~l~~~-~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 404 (498)
++.+. +...|...+.. +...|+.+.|..+|+++.+. .+.+...|...+..+.+.|+.+.|+.+|++..+..+..|
T Consensus 159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 65431 22233332222 23356777777777777763 233456677777777777777777777777766444555
Q ss_pred C--hhHHH-------hhCChHHHHHHHHHHHccCCCCC
Q 041942 405 N--IRHYG-------VHGDVELGRLANKRLLNMRKDES 433 (498)
Q Consensus 405 ~--~~~y~-------~~g~~~~a~~~~~~~~~~~~~~~ 433 (498)
+ ...|. .+|+.+.+..+++++.+..|.+.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 4 11121 66777777777777777666553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=9.8e-09 Score=88.70 Aligned_cols=189 Identities=15% Similarity=0.039 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCC
Q 041942 174 WSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANELFNEVPK---RDVVSWNAMISGYVLCG 247 (498)
Q Consensus 174 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g 247 (498)
|..+..+|.+.|++++|+..|++.. +.++.+|..+..++.+.|++++|.+.|+++.+ .+..++..+..+|...|
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 119 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 119 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 3444455555555555555555554 33445566666666666666666666665542 23445666666677777
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCC----HHHH
Q 041942 248 MNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGS----IERA 323 (498)
Q Consensus 248 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~A 323 (498)
++++|...|+...+.. +.+......+..++.+.+..+....+. ....... +....+ .++..+..... .+.+
T Consensus 120 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~ 194 (259)
T d1xnfa_ 120 RDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLK-QHFEKSD--KEQWGW-NIVEFYLGNISEQTLMERL 194 (259)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHSC--CCSTHH-HHHHHHTTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHH-HHhhccc--hhhhhh-hHHHHHHHHHHHHHHHHHH
Confidence 7777777777666543 223333333333333444333333333 2222211 111111 12222221111 2222
Q ss_pred HHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 041942 324 IEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT 369 (498)
Q Consensus 324 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 369 (498)
...+..... + ...+|..+...|...|++++|.+.|++.+. ..|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 241 (259)
T d1xnfa_ 195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVH 241 (259)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCT
T ss_pred HHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCC
Confidence 222211111 1 234666778888888888888888888887 4454
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=1.2e-07 Score=77.36 Aligned_cols=86 Identities=10% Similarity=-0.024 Sum_probs=77.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 041942 311 IDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEG 389 (498)
Q Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 389 (498)
...+...|+++.|++.|.++.+++..+|..+..+|...|++++|++.|++.++ +.|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 44567889999999999999999999999999999999999999999999999 5564 78888999999999999999
Q ss_pred HHHHHHhHH
Q 041942 390 KKYFKLMRD 398 (498)
Q Consensus 390 ~~~~~~~~~ 398 (498)
.+.|++...
T Consensus 90 ~~~~~kAl~ 98 (192)
T d1hh8a_ 90 IKDLKEALI 98 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=2.3e-07 Score=68.64 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=54.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHh
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGV 411 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~ 411 (498)
-...+...|++++|+..|++.++ ..| +...|..+..++...|++++|+..+.+..+ +.|+ ...|..
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD---LKPDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHH---hccchhhHHHHHHHHHHH
Confidence 34556667777777777777766 334 355666666667766666666666666655 2333 222224
Q ss_pred hCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 041942 412 HGDVELGRLANKRLLNMRKDESGDYVLLSN 441 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 441 (498)
.|++++|...|+++++++|+++.++..+..
T Consensus 84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQN 113 (117)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 455555555555555555555554444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=1.6e-06 Score=75.84 Aligned_cols=58 Identities=12% Similarity=-0.024 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCchHHHHHHHHH
Q 041942 237 NAMISGYVLCGMNKQALEMFEEMRSV----GERP-DDVTMLSLLTACADLGDLEVGKKVHCTL 294 (498)
Q Consensus 237 ~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 294 (498)
......|...|++++|...|.+..+. +-++ -..+|..+..+|.+.|++++|...++..
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a 103 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence 33466677777777777777766532 1111 1235566666666667777666666433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=2.4e-07 Score=81.24 Aligned_cols=93 Identities=11% Similarity=-0.055 Sum_probs=44.2
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcch-----hhHHHHHHHHHhcCCHHHHHHHHhcCCCCC--------hh
Q 041942 270 TMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKV-----LHGNALIDMYAKCGSIERAIEVFLGMRDRD--------VS 336 (498)
Q Consensus 270 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~ 336 (498)
++..+...+...|++++|..+|++........+.. ..+...+..+...|+++.|...+++..+-+ ..
T Consensus 160 ~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~ 239 (290)
T d1qqea_ 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN 239 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHH
Confidence 34445555556666666666654443332211110 112233444555666666666666655321 12
Q ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHH
Q 041942 337 TWSTLIGGLAF--HGFAEESIAMFREMQ 362 (498)
Q Consensus 337 ~~~~l~~~~~~--~~~~~~A~~~~~~m~ 362 (498)
....++.++.. .+.+++|+..|+++.
T Consensus 240 ~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 240 FLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 33445555443 234666666665443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=3.1e-07 Score=72.27 Aligned_cols=110 Identities=6% Similarity=0.013 Sum_probs=74.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHh
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGV 411 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~ 411 (498)
....|.+.|++++|+..|++.++ +.| +...|..+..+|...|++++|...|+++++ +.|+ ...|..
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~---~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHH---HcccchHHHHHHHHHHHH
Confidence 45566777777777777777777 334 366666777777777777777777777766 4455 333447
Q ss_pred hCChHHHHHHHHHHHccCCCCCchHHHHHHHH--HhCCCchHHHHH
Q 041942 412 HGDVELGRLANKRLLNMRKDESGDYVLLSNIY--ASRGEWNRVEKV 455 (498)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~ 455 (498)
.|++++|...+++++.++|.++.++..+..+. ...+.+++|+..
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77777777777778878888888777766553 334456666544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.57 E-value=1.7e-07 Score=77.07 Aligned_cols=108 Identities=6% Similarity=-0.051 Sum_probs=72.1
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC------
Q 041942 333 RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN------ 405 (498)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------ 405 (498)
|+...+......|...|++++|+..|+++++. .| +...|..+..+|.+.|++++|+..++++++ +.|+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHH
Confidence 45555666778888888888888888888873 45 467777788888888888888888877765 5555
Q ss_pred --hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 041942 406 --IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYAS 445 (498)
Q Consensus 406 --~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (498)
...|...|++++|...|+++++++|++...+...+..+..
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 2233366666666666666666665554444444444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=2.3e-07 Score=68.62 Aligned_cols=86 Identities=8% Similarity=0.136 Sum_probs=77.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC
Q 041942 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (498)
-...+.+.|++++|+..|+++++ ..|+ ...|...|++++|...++++++++|+++.+|..++.++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 35678899999999999999988 4565 445559999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhhCCC
Q 041942 448 EWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 448 ~~~~A~~~~~~m~~~~~ 464 (498)
++++|+..|++..+...
T Consensus 86 ~~~~A~~~~~~a~~~~p 102 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEA 102 (117)
T ss_dssp CHHHHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 99999999999987654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.1e-06 Score=71.34 Aligned_cols=120 Identities=14% Similarity=-0.005 Sum_probs=82.5
Q ss_pred HHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHH
Q 041942 147 IYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANE 223 (498)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 223 (498)
...+...|+++.|.+.|+++.++++.+|..+..++...|++++|+..|++.. +.++..|..+..++.+.|++++|.+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 3445667777777777777777777777777777777777777777777776 4455677777777777777777777
Q ss_pred HHhhCCC---C----------------ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC
Q 041942 224 LFNEVPK---R----------------DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERP 266 (498)
Q Consensus 224 ~~~~~~~---~----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 266 (498)
.|++... . ...++..+..++...|++++|.+.+....+....+
T Consensus 92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 7665421 1 11345556677778888888888887777654333
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.49 E-value=1.9e-07 Score=76.87 Aligned_cols=95 Identities=5% Similarity=-0.159 Sum_probs=84.5
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 041942 302 AKVLHGNALIDMYAKCGSIERAIEVFLGMR---DRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVL 377 (498)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~ 377 (498)
|+...+......|.+.|++++|+..|++.. ..+...|..+..+|.+.|++++|+..|+++++ +.|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHH
Confidence 556666778899999999999999998765 34788999999999999999999999999998 6675 78899999
Q ss_pred HHHhhcCCHHHHHHHHHHhHH
Q 041942 378 VACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.++.+.|++++|...|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999876
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.48 E-value=1.9e-07 Score=68.39 Aligned_cols=90 Identities=8% Similarity=-0.089 Sum_probs=63.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHH
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELG 418 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a 418 (498)
.+...+.+.|++++|+..|++.++ ..|+ ..+|..+..++.+.|++++|+..++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~------------------------ 74 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALN------------------------ 74 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHH------------------------
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccc------------------------
Confidence 345556666666666666666666 3343 5555555555555555555555554
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 419 RLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
++++++|+++.+|..++.+|...|++++|++.+++.+
T Consensus 75 -----~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 75 -----HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp -----HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 4555789999999999999999999999999999863
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=7e-07 Score=70.16 Aligned_cols=86 Identities=10% Similarity=0.047 Sum_probs=77.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCC
Q 041942 376 VLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRG 447 (498)
Q Consensus 376 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 447 (498)
....|.+.|++++|...|+++.+ +.|+ ...|...|++++|...|+++++++|.+..+|..++.+|...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 45678899999999999999988 5676 445559999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhhCCC
Q 041942 448 EWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 448 ~~~~A~~~~~~m~~~~~ 464 (498)
++++|+..+++..+...
T Consensus 93 ~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKP 109 (159)
T ss_dssp CHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 99999999999987653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=2.8e-06 Score=67.32 Aligned_cols=78 Identities=9% Similarity=0.026 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
+|..+..+|.+.|++++|+..++..++ +.|+ ...|...|++++|...|+++++++|+++.+...+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~---~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALE---LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhh---ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344455566666666666666666665 3444 33333666677777777777777888888888887776
Q ss_pred HhCCCchHH
Q 041942 444 ASRGEWNRV 452 (498)
Q Consensus 444 ~~~g~~~~A 452 (498)
...++..+.
T Consensus 141 ~~~~~~~~~ 149 (170)
T d1p5qa1 141 QRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665554433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=4.9e-06 Score=65.88 Aligned_cols=113 Identities=4% Similarity=-0.111 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVE 416 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~ 416 (498)
.+......+.+.|++++|+..|.+.++. -|....+.. ........+...+.. --...|.+.|+++
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~~~--------~~~~~~~~~~~~~~~-----nla~~y~k~~~~~ 79 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSN--------EEAQKAQALRLASHL-----NLAMCHLKLQAFS 79 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCS--------HHHHHHHHHHHHHHH-----HHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhccccch--------HHHhhhchhHHHHHH-----HHHHHHHhhhhcc
Confidence 4455666777888888888888887762 111000000 000000000000000 0134577899999
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+|...++++++++|+++.+|..++.+|...|++++|+..|++..+.+.
T Consensus 80 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 80 AAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred cccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999987543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=3e-06 Score=62.65 Aligned_cols=96 Identities=8% Similarity=-0.067 Sum_probs=43.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhHHhcCCCCC--------hhHH
Q 041942 341 LIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGK---VEEGKKYFKLMRDEYNIEPN--------IRHY 409 (498)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~--------~~~y 409 (498)
++..+...+++++|.+.|++....+ +.+..++..+..++.+.++ +++|+.+++++.. ..-.|+ ...|
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~-~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-KGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-ccCCchHHHHHHHHHHHH
Confidence 4444555555555555555555522 2234455555555544332 2335555555433 111111 1122
Q ss_pred HhhCChHHHHHHHHHHHccCCCCCchHHH
Q 041942 410 GVHGDVELGRLANKRLLNMRKDESGDYVL 438 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (498)
.+.|++++|.+.|+++++++|++..+...
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l 111 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQNNQAKEL 111 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhCcCCHHHHHH
Confidence 24455555555555555556665544433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.14 E-value=8e-06 Score=63.31 Aligned_cols=99 Identities=7% Similarity=-0.064 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCC----CCC-----------HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCC
Q 041942 339 STLIGGLAFHGFAEESIAMFREMQRLKV----RPT-----------EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIE 403 (498)
Q Consensus 339 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~----~p~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 403 (498)
..-...+.+.|++.+|+..|.+++..-. .++ ..+|..+..+|.+.|++++|.+.++.+++ +.
T Consensus 21 ~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~---~~ 97 (153)
T d2fbna1 21 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK---ID 97 (153)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc---cc
Confidence 3344555566666666666666554210 011 11333344444455555555555544444 23
Q ss_pred CC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 404 PN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 404 p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
|+ ...|...|++++|...|+++++++|+++.+...+.
T Consensus 98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~ 142 (153)
T d2fbna1 98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 142 (153)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 32 22222444444444444445555555555444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=0.0021 Score=55.81 Aligned_cols=278 Identities=11% Similarity=0.040 Sum_probs=114.1
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHH
Q 041942 68 PDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147 (498)
Q Consensus 68 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 147 (498)
||..--..+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 3333333344445555555555555554321 344444445555555544444322 1344555555
Q ss_pred HHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHH
Q 041942 148 YFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMP---VRDLVSWNVMITGYAKQGEMEKANEL 224 (498)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~ 224 (498)
..+........|.-. ......++.....++..|-..|.+++...+++... ..+...++.++..|++.+. ++..+.
T Consensus 77 ~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~e~ 154 (336)
T d1b89a_ 77 FACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMREH 154 (336)
T ss_dssp HHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred HHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHHHH
Confidence 555544444333221 11111233333445555555555555555555433 2333345555555555432 222222
Q ss_pred HhhCC-CC----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHH
Q 041942 225 FNEVP-KR----------DVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCT 293 (498)
Q Consensus 225 ~~~~~-~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 293 (498)
++... .- ....|.-++..|.+.|+++.|..++ .+. .++..-....+..+.+..+.+...+....
T Consensus 155 l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~ 229 (336)
T d1b89a_ 155 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQF 229 (336)
T ss_dssp HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence 22211 10 1122444555566666666655443 221 22333333445555566666655555533
Q ss_pred HHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041942 294 LLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITF 373 (498)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 373 (498)
.+... | ...+.++......-+..+.++.++ +.++..-...+++.....| +....
T Consensus 230 yL~~~---p--~~i~~lL~~v~~~~d~~r~V~~~~------------------k~~~l~li~p~Le~v~~~n---~~~vn 283 (336)
T d1b89a_ 230 YLEFK---P--LLLNDLLMVLSPRLDHTRAVNYFS------------------KVKQLPLVKPYLRSVQNHN---NKSVN 283 (336)
T ss_dssp HHHHC---G--GGHHHHHHHHGGGCCHHHHHHHHH------------------HTTCTTTTHHHHHHHHTTC---CHHHH
T ss_pred HHHcC---H--HHHHHHHHHhccCCCHHHHHHHHH------------------hcCCcHHHHHHHHHHHHcC---hHHHH
Confidence 33211 2 223444444444444444444433 3344444444444433322 23455
Q ss_pred HHHHHHHhhcCCHHHHHHHH
Q 041942 374 VGVLVACSHAGKVEEGKKYF 393 (498)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~ 393 (498)
+.+...|...++++.-++.+
T Consensus 284 ~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 284 ESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCcchhHHHHHHH
Confidence 55555555555554443333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.12 E-value=9.8e-05 Score=62.97 Aligned_cols=51 Identities=8% Similarity=-0.026 Sum_probs=39.5
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHHHHh----CCCchHHHHHHHHhhhCCCc
Q 041942 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYAS----RGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 465 (498)
.++++|...|+++.+. .++.++..|+..|.+ ..++++|.+.|++..+.|..
T Consensus 196 ~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 196 KNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 3577777777777665 456788889998886 34788999999999888875
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.08 E-value=1.1e-05 Score=63.65 Aligned_cols=86 Identities=8% Similarity=0.043 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
+|..+..+|.+.|++++|+..++.+.+ +.|+ ...|...|++++|...|+++++++|+++.+...+..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~---l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALG---LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhh---cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344555667777777777777777766 3454 33444777788888888888888888888888888877
Q ss_pred HhCCCch-HHHHHHHHhh
Q 041942 444 ASRGEWN-RVEKVRKLMD 460 (498)
Q Consensus 444 ~~~g~~~-~A~~~~~~m~ 460 (498)
...+... ...++|.+|.
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 6666544 3445555553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.07 E-value=9.8e-06 Score=64.07 Aligned_cols=70 Identities=6% Similarity=0.008 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
.+..+..++.+.|++++|+..+.++++ +.|+ ...|...|++++|...|+++++++|+++.++..+..+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~---~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhh---hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344444555555555555555555544 3343 22333555555555555555556666666655555544
Q ss_pred H
Q 041942 444 A 444 (498)
Q Consensus 444 ~ 444 (498)
.
T Consensus 156 ~ 156 (169)
T d1ihga1 156 Q 156 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.01 E-value=1.5e-05 Score=57.89 Aligned_cols=87 Identities=10% Similarity=0.034 Sum_probs=74.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRD--R-DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAG 384 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g 384 (498)
.+...+.+.|++++|...|++... | ++.+|..+..++.+.|++++|+..+++.++ +.|+ ...+..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHCC
Confidence 456678888999999999988763 3 678899999999999999999999999998 5565 788888999999999
Q ss_pred CHHHHHHHHHHhH
Q 041942 385 KVEEGKKYFKLMR 397 (498)
Q Consensus 385 ~~~~a~~~~~~~~ 397 (498)
++++|.+.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998763
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.01 E-value=2.2e-05 Score=60.68 Aligned_cols=92 Identities=10% Similarity=-0.022 Sum_probs=75.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC---------------------hhHHHhhCChHHHHHHHHHHHccCCC
Q 041942 373 FVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN---------------------IRHYGVHGDVELGRLANKRLLNMRKD 431 (498)
Q Consensus 373 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---------------------~~~y~~~g~~~~a~~~~~~~~~~~~~ 431 (498)
+..-...+.+.|++.+|...++++.......+. ...|.+.|++++|...++++++++|.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~ 99 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 99 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence 333446778899999999999998873322222 22234899999999999999999999
Q ss_pred CCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 432 ESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+..+|..++.+|...|++++|+..|++..+.+.
T Consensus 100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P 132 (153)
T d2fbna1 100 NVKALYKLGVANMYFGFLEEAKENLYKAASLNP 132 (153)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999987553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=1.4e-05 Score=59.65 Aligned_cols=95 Identities=7% Similarity=0.077 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCCh
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDV 415 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~ 415 (498)
.+..+...|...|++++|+..|++.++. .| +...+..+..+|.+.|++++|...++++++
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------------- 66 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE----------------- 66 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH-----------------
Confidence 3455677888888888888888888884 45 467777788888888888888888877766
Q ss_pred HHHHHHHHHHHccCCCCC-------chHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 416 ELGRLANKRLLNMRKDES-------GDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
++|+++ .+|..++..+...+++++|++.|++....
T Consensus 67 ------------l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 67 ------------VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp ------------HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------hCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 233332 35666777788888899999888887653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.99 E-value=2.1e-05 Score=62.48 Aligned_cols=123 Identities=10% Similarity=-0.124 Sum_probs=82.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCH--HHHHHHHHHhHHhcCCCCChhHHHhhCCh
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKV--EEGKKYFKLMRDEYNIEPNIRHYGVHGDV 415 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~p~~~~y~~~g~~ 415 (498)
...........|++++|.+.|.+.... .+....- . ...+.+ .....+-..... -..--...+...|++
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l~-----~-~~~~~w~~~~r~~l~~~~~~--a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALRE--WRGPVLD-----D-LRDFQFVEPFATALVEDKVL--AHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTTG-----G-GTTSTTHHHHHHHHHHHHHH--HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--Ccccccc-----c-CcchHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCc
Confidence 344556778899999999999999883 3322100 0 000100 001111111000 000014456689999
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh-----hCCCccCCce
Q 041942 416 ELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD-----DSDIKKQPGC 470 (498)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 470 (498)
++|...++++++.+|.+..+|..++.+|...|++.+|++.|+++. +.|+.|.+..
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 999999999999999999999999999999999999999999984 4688876643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.96 E-value=4.1e-05 Score=60.24 Aligned_cols=110 Identities=5% Similarity=-0.120 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhh
Q 041942 336 STWSTLIGGLAFHGFAEESIAMFREMQRL---KVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVH 412 (498)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~ 412 (498)
..+......+.+.|++.+|+..|++.+.. ...++...... .... -..++.. -...|.+.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~-~~~~--------~~~~~~N---------la~~~~~l 77 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKA-SESF--------LLAAFLN---------LAMCYLKL 77 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHH-HHHH--------HHHHHHH---------HHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhh-cchh--------HHHHHHh---------HHHHHHHh
Confidence 44556667777788888888888776541 11111110000 0000 0000000 03456689
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
|++++|...++++++++|++..+|..++.+|...|++++|+..|+++.+..
T Consensus 78 ~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 78 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred hhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998754
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.92 E-value=0.00087 Score=56.75 Aligned_cols=217 Identities=10% Similarity=0.037 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC-CCCcchHHHHHHHHHh----cCChHHHHHHHhhCCCC-ChhhHHHHHHHHHh--
Q 041942 174 WSSLTAGYARRGELSMARSLFDEMP-VRDLVSWNVMITGYAK----QGEMEKANELFNEVPKR-DVVSWNAMISGYVL-- 245 (498)
Q Consensus 174 ~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~-- 245 (498)
+..|...+.+.+++++|+++|++.. .-+...+..|...|.. ..+...|...+....++ +......+...+..
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~ 84 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQ 84 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccccccccc
Confidence 3334444444445555555554443 2233333334444433 33455555555544332 22333333333322
Q ss_pred --CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHh----c
Q 041942 246 --CGMNKQALEMFEEMRSVGERPDDVTMLSLLTAC--ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAK----C 317 (498)
Q Consensus 246 --~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 317 (498)
.++.+.|...++.....|.......+ ...... ........+...+... .. ..+...+..|...|.. .
T Consensus 85 ~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~~~~~~a~~~~~~~-~~---~~~~~~~~~L~~~~~~~~~~~ 159 (265)
T d1ouva_ 85 GVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVTRDFKKAVEYFTKA-CD---LNDGDGCTILGSLYDAGRGTP 159 (265)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSCCCHHHHHHHHHHH-HH---TTCHHHHHHHHHHHHHTSSSC
T ss_pred ccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcccchhHHHHHHhhhh-hc---ccccchhhhhhhhhccCCCcc
Confidence 34556666666666655532111111 111111 1122333444443111 11 1223334445555543 3
Q ss_pred CCHHHHHHHHhcCCC-CChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----cCCHHH
Q 041942 318 GSIERAIEVFLGMRD-RDVSTWSTLIGGLAF----HGFAEESIAMFREMQRLKVRPTEITFVGVLVACSH----AGKVEE 388 (498)
Q Consensus 318 ~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 388 (498)
.+...+...++...+ .+......+...|.. .+++++|+.+|++..+.| ++..+..|...|.+ ..+.++
T Consensus 160 ~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~ 236 (265)
T d1ouva_ 160 KDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQ 236 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTT
T ss_pred cccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHH
Confidence 345555555544432 245555555555544 446677777777766654 23333344444433 225556
Q ss_pred HHHHHHHhHH
Q 041942 389 GKKYFKLMRD 398 (498)
Q Consensus 389 a~~~~~~~~~ 398 (498)
|.++|++...
T Consensus 237 A~~~~~kAa~ 246 (265)
T d1ouva_ 237 AIENFKKGCK 246 (265)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666555
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=1.6e-05 Score=58.63 Aligned_cols=89 Identities=11% Similarity=0.071 Sum_probs=39.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh
Q 041942 310 LIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGF---AEESIAMFREMQRLKVRPT-EITFVGVLVACSH 382 (498)
Q Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 382 (498)
+++.+...+++++|++.|++... .++.++..+..++.+.++ +++|+.+++++...+..|+ ..++..+..+|.+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 33444444444444444444331 233444444444444332 2335555555544221121 1234444455555
Q ss_pred cCCHHHHHHHHHHhHH
Q 041942 383 AGKVEEGKKYFKLMRD 398 (498)
Q Consensus 383 ~g~~~~a~~~~~~~~~ 398 (498)
.|++++|++.|+++.+
T Consensus 85 ~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQ 100 (122)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHH
Confidence 5555555555555544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=0.0066 Score=52.64 Aligned_cols=274 Identities=10% Similarity=0.076 Sum_probs=139.5
Q ss_pred HHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 041942 144 NSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANE 223 (498)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 223 (498)
..+...|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+.. +..+|..+..++.+......|.-
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~la~i 90 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQM 90 (336)
T ss_dssp -----------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHHHHH
Confidence 344455555666666666555332 24555556666666666666665442 44466666666666555544322
Q ss_pred HHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcc
Q 041942 224 LFNEVPKRDVVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAK 303 (498)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 303 (498)
+ ......+......++..|-..|.+++...++...... -.++...++.++..|++.+. ++..+.+ ...+...+
T Consensus 91 ~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l----~~~s~~y~ 163 (336)
T d1b89a_ 91 C-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHL----ELFWSRVN 163 (336)
T ss_dssp T-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHH----HHHSTTSC
T ss_pred H-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHH----HhccccCC
Confidence 1 1111223334455667777777777777777765532 24455566667776666532 2222222 21111111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhcCCCC------------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 041942 304 VLHGNALIDMYAKCGSIERAIEVFLGMRDR------------DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371 (498)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 371 (498)
+ ..++..|.+.+-+.++.-++..+.+. +..-....+..+.+..+.+...+...-..+ ..| .
T Consensus 164 ~---~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~--~~p--~ 236 (336)
T d1b89a_ 164 I---PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKP--L 236 (336)
T ss_dssp H---HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCG--G
T ss_pred H---HHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHH--cCH--H
Confidence 1 12334444444444444444443321 222334456666677777666666555554 233 3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchH
Q 041942 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNR 451 (498)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 451 (498)
..+.++......-+..+..+.+++ .+++.-....++...+ .++..+.++|...|...++++.
T Consensus 237 ~i~~lL~~v~~~~d~~r~V~~~~k----------------~~~l~li~p~Le~v~~--~n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 237 LLNDLLMVLSPRLDHTRAVNYFSK----------------VKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp GHHHHHHHHGGGCCHHHHHHHHHH----------------TTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHh----------------cCCcHHHHHHHHHHHH--cChHHHHHHHHHHHhCcchhHH
Confidence 445566666666666665555543 3344444556666543 3345789999999999998655
Q ss_pred HHHHH
Q 041942 452 VEKVR 456 (498)
Q Consensus 452 A~~~~ 456 (498)
-...+
T Consensus 299 l~~~i 303 (336)
T d1b89a_ 299 LRTSI 303 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.82 E-value=3.3e-05 Score=60.89 Aligned_cols=113 Identities=6% Similarity=-0.118 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVE 416 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~ 416 (498)
.+......+...|++++|++.|.++++ +.+........... .. -+...+.-+... ...|.+.|+++
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~--~~~~~~~~~~~~~~-~~-~~~~~~~~~~nl----------a~~~~~~~~~~ 94 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSRAAAEDADG-AK-LQPVALSCVLNI----------GACKLKMSDWQ 94 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHSCHHHH-GG-GHHHHHHHHHHH----------HHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hhhhhhhhhhhHHH-HH-hChhhHHHHHHH----------HHHHHhhcccc
Confidence 455566677788888888888888765 11111000000000 00 000011111110 34566899999
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 417 LGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
+|...++++++++|+++.+|..++.+|.+.|++++|+..|++..+..
T Consensus 95 ~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 95 GAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998754
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=5.2e-05 Score=56.44 Aligned_cols=88 Identities=7% Similarity=0.035 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--------HHHHHHHH
Q 041942 309 ALIDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT--------EITFVGVL 377 (498)
Q Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--------~~~~~~l~ 377 (498)
.+...+.+.|++++|+..|++..+ .+..+|..+..+|.+.|++++|+..++++++ +.|+ ..+|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHH
Confidence 345556666666666666665542 3456666677777777777777777777665 2221 12444455
Q ss_pred HHHhhcCCHHHHHHHHHHhHH
Q 041942 378 VACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 378 ~~~~~~g~~~~a~~~~~~~~~ 398 (498)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 555566666666666666554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.73 E-value=3.6e-05 Score=58.74 Aligned_cols=120 Identities=12% Similarity=0.084 Sum_probs=75.6
Q ss_pred CCHHHHHHHHhcCC--CC-ChhHHHHHHHHHHh----------CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhc
Q 041942 318 GSIERAIEVFLGMR--DR-DVSTWSTLIGGLAF----------HGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHA 383 (498)
Q Consensus 318 ~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~----------~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~ 383 (498)
+.+++|...|+... .| +..++..+..+|.. .+.+++|+..|+++++ +.|+ ..+|..+..+|...
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHHHHHHc
Confidence 33455555554443 12 34444444444432 2445788888888888 5564 66777777776655
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCC
Q 041942 384 GKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSD 463 (498)
Q Consensus 384 g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 463 (498)
|++. ++ .....+++++|...|+++++++|++...+..|... .+|.+++.+..++|
T Consensus 89 g~~~----------------~~--~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 89 AFLT----------------PD--ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHC----------------CC--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSS
T ss_pred ccch----------------hh--HHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 4221 11 11123456788889999999999998877777665 46788888888877
Q ss_pred C
Q 041942 464 I 464 (498)
Q Consensus 464 ~ 464 (498)
+
T Consensus 144 ~ 144 (145)
T d1zu2a1 144 L 144 (145)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.67 E-value=2.2e-05 Score=60.05 Aligned_cols=98 Identities=7% Similarity=-0.068 Sum_probs=75.1
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCChhHHHhhCChHHHHHHHH
Q 041942 345 LAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPNIRHYGVHGDVELGRLANK 423 (498)
Q Consensus 345 ~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~ 423 (498)
|-+.+.+++|...|+..++ +.|+ ...+..+..++...+++..+.+- .+.+++|...|+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~-------------------~~~~~~Ai~~~~ 65 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDA-------------------KQMIQEAITKFE 65 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHH-------------------HHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHH-------------------HHHHHHHHHHHH
Confidence 4455678999999999988 4564 66777777777766655544442 234567999999
Q ss_pred HHHccCCCCCchHHHHHHHHHhCCC-----------chHHHHHHHHhhhCC
Q 041942 424 RLLNMRKDESGDYVLLSNIYASRGE-----------WNRVEKVRKLMDDSD 463 (498)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~~ 463 (498)
++++++|+++.+|..++.+|...|+ +++|.+.|++..+..
T Consensus 66 kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 66 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 9999999999999999999988764 578888998887644
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.66 E-value=0.00019 Score=55.42 Aligned_cols=104 Identities=13% Similarity=0.011 Sum_probs=70.5
Q ss_pred HHHHH--HHHHHhCCCHHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCC
Q 041942 337 TWSTL--IGGLAFHGFAEESIAMFREMQRLKV-RPT----------EITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIE 403 (498)
Q Consensus 337 ~~~~l--~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 403 (498)
+|..+ ...+...|++++|++.|++.++..- .|+ ..+|+.+..+|.+.|++++|.+.+++..+
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~----- 83 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 83 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh-----
Confidence 44444 4456677999999999999876210 011 35677788888999999999888887765
Q ss_pred CChhHHHhhCChHHHHHHHHHHHccCCC----CCchHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 041942 404 PNIRHYGVHGDVELGRLANKRLLNMRKD----ESGDYVLLSNIYASRGEWNRVEKVRKLMDDS 462 (498)
Q Consensus 404 p~~~~y~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 462 (498)
++.+.....++ ...++..++.+|...|++++|++.|++..+.
T Consensus 84 -----------------~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 84 -----------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp -----------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------cccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11221111221 1235778889999999999999998887653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.60 E-value=0.00067 Score=53.44 Aligned_cols=134 Identities=14% Similarity=0.112 Sum_probs=88.0
Q ss_pred HHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCHHHH
Q 041942 275 LTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRDVSTWSTLIGGLAFHGFAEES 354 (498)
Q Consensus 275 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 354 (498)
.......|++++|...|.+.+.-....+-... ..+.+ +...-..+.......+..+...+...|++++|
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w--~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A 86 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQF--VEPFATALVEDKVLAHTAKAEAEIACGRASAV 86 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTT--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence 34567778888888888666554322111000 00000 00000011111345678889999999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHH----hcCCCCChhHHHhhCChHHHHHHHHHHHccC
Q 041942 355 IAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRD----EYNIEPNIRHYGVHGDVELGRLANKRLLNMR 429 (498)
Q Consensus 355 ~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~ 429 (498)
+..++++++ +.| +...|..++.++.+.|+..+|.+.|+++.+ +.|+.|...+ ..+++.++..+
T Consensus 87 l~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l----------~~l~~~il~~~ 154 (179)
T d2ff4a2 87 IAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL----------RALNERILRQQ 154 (179)
T ss_dssp HHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH----------HHHHHHHHTTC
T ss_pred HHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH----------HHHHHHHHhCC
Confidence 999999999 455 688999999999999999999999998754 3789988543 34455555444
Q ss_pred CC
Q 041942 430 KD 431 (498)
Q Consensus 430 ~~ 431 (498)
|.
T Consensus 155 ~~ 156 (179)
T d2ff4a2 155 PL 156 (179)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=1.8e-05 Score=74.49 Aligned_cols=201 Identities=8% Similarity=0.022 Sum_probs=95.0
Q ss_pred HHHHHHhcCC--CC-CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChh---hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 041942 189 MARSLFDEMP--VR-DLVSWNVMITGYAKQGEMEKANELFNEVPKRDVV---SWNAMISGYVLCGMNKQALEMFEEMRSV 262 (498)
Q Consensus 189 ~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 262 (498)
+|.+.|++.. .| ....+..+..++...+++++| |+++...|+. .++.. ...-...+..+.+.++...+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e--~~Lw~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVE--QDLWNHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHH--HHHHHHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHH--HHHHHHHHHHHHHHHHHhccc
Confidence 4666666665 33 344555566667777777665 4444322221 11111 111111244566666666654
Q ss_pred CCCCCHHHHHHHHHHH--hccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcCCCCC-hhHHH
Q 041942 263 GERPDDVTMLSLLTAC--ADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGMRDRD-VSTWS 339 (498)
Q Consensus 263 g~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 339 (498)
...++..-.......+ ...+.++.+...+...... .+++...+..+...+.+.|+.++|...+.....++ ..++.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 156 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLV 156 (497)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHH
Confidence 4344333222222221 1223344444333211111 12334455566667777777777777665544332 24666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 340 TLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
.+...+...|++++|...|++..+ +.|+ ...|+.|...+...|+..+|...+.+...
T Consensus 157 ~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 157 HLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777788888888888888888887 4565 57788888888888888888888887766
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=1.4e-05 Score=75.43 Aligned_cols=213 Identities=8% Similarity=-0.068 Sum_probs=95.1
Q ss_pred HHHHHHhhCCC--CC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 041942 220 KANELFNEVPK--RD-VVSWNAMISGYVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLD 296 (498)
Q Consensus 220 ~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 296 (498)
+|.+.|++..+ |+ ...+..+..+|...|++++| |++++.. .|+...-......+. ...+..+...++...+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW-NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH-HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH-HHHHHHHHHHHHHhcc
Confidence 45666666542 32 34555666777777777765 5555533 222111000001111 1123445555533332
Q ss_pred hhcCCcchhhHHH-H-HHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 041942 297 MTSGVAKVLHGNA-L-IDMYAKCGSIERAIEVFLGMRD---RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEI 371 (498)
Q Consensus 297 ~~~~~~~~~~~~~-l-~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 371 (498)
... .++..-... + ...+...+.++.|+..+....+ ++...+..+...+.+.|+.++|...+++... ..| ..
T Consensus 78 ~~~-~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~-~~ 153 (497)
T d1ya0a1 78 NRA-NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YIC-QH 153 (497)
T ss_dssp CSS-CTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHH--HHH-HH
T ss_pred ccc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CCH-HH
Confidence 221 222221111 1 1122334556667666665443 3455667777777777888888777766654 112 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 041942 372 TFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIY 443 (498)
Q Consensus 372 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (498)
++..+...+...|++++|...+++..+ +.|+ ...|...|+..+|...|.+++..+|+.+.++..|+..+
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 555666677777777777777777766 4555 22333566777777777777777777666777666655
Q ss_pred Hh
Q 041942 444 AS 445 (498)
Q Consensus 444 ~~ 445 (498)
.+
T Consensus 231 ~~ 232 (497)
T d1ya0a1 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.00039 Score=48.28 Aligned_cols=61 Identities=8% Similarity=-0.143 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 338 WSTLIGGLAFHGFAEESIAMFREMQRLK-----VRPT-EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~-----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+-.+...+.+.|++++|+..|++..+.. ..++ ..++..+..++.+.|++++|...++++.+
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 3455666666667777776666665421 1111 23444444555555555444444444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.20 E-value=0.00095 Score=56.21 Aligned_cols=115 Identities=10% Similarity=0.102 Sum_probs=73.3
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHhhCChHHHHHHH
Q 041942 345 LAFHGFAEESIAMFREMQRLKVRP-TEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN-IRHYGVHGDVELGRLAN 422 (498)
Q Consensus 345 ~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~y~~~g~~~~a~~~~ 422 (498)
..+.|++++|+..+++.++. .| |...+..+...++..|++++|...++...+ ..|+ ...+...+..-.+....
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhcccc
Confidence 34567777777777777773 45 466777777777777777777777777766 4555 22332333333344444
Q ss_pred HHHHc--------cCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCC
Q 041942 423 KRLLN--------MRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDI 464 (498)
Q Consensus 423 ~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 464 (498)
+.+.. .+|++...+...+..+...|++++|.+.++++.+...
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 44332 1232334455667778888999999999999876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.96 E-value=0.0016 Score=54.82 Aligned_cols=117 Identities=7% Similarity=-0.224 Sum_probs=77.8
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHH
Q 041942 80 SAQSQNPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTA 159 (498)
Q Consensus 80 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 159 (498)
..+.|++++|+..+++..+.. +-|...+..+...++..|++++|...++...+.. +-+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 456789999999999988764 5567888888899999999999999999988864 22344555555555555555554
Q ss_pred HHhhcc--CC-CC-CcchHHHHHHHHHhcCChHHHHHHHhcCC
Q 041942 160 SVLFDG--DA-KM-DVVAWSSLTAGYARRGELSMARSLFDEMP 198 (498)
Q Consensus 160 ~~~~~~--~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 198 (498)
...... .. +| +...+......+.+.|+.++|...++++.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~ 126 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 433322 11 12 12223334556677788888888877665
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.80 E-value=0.0032 Score=48.15 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHhHH
Q 041942 337 TWSTLIGGLAFHGFAEESIAMFREMQRL-----KVRPT-----EITFVGVLVACSHAGKVEEGKKYFKLMRD 398 (498)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 398 (498)
+|+.+..+|...|++++|+..+++.++. ...++ ...+..+..+|...|++++|.+.|++..+
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666665555555431 11111 12344455666666666666666666554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.0035 Score=43.11 Aligned_cols=67 Identities=10% Similarity=0.061 Sum_probs=40.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhHHhcCCC----CC--------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHH
Q 041942 374 VGVLVACSHAGKVEEGKKYFKLMRDEYNIE----PN--------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLS 440 (498)
Q Consensus 374 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----p~--------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (498)
-.+...+.+.|++++|...+++..+..... ++ ...|.+.|++++|...++++++++|+++.++..+.
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 345566667777777777777665522111 11 33333667777777777777777777766666553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.35 E-value=0.26 Score=34.53 Aligned_cols=137 Identities=10% Similarity=0.051 Sum_probs=83.8
Q ss_pred hcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHH
Q 041942 316 KCGSIERAIEVFLGMRD-RDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPT-EITFVGVLVACSHAGKVEEGKKYF 393 (498)
Q Consensus 316 ~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 393 (498)
-.|.+++..+++.+... .+..-||-+|.-....-+-+...+.++..-+- +..+ ..-...++.++...+...+-..+-
T Consensus 14 ldG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDls~C~Nlk~vv~C~~~~n~~se~vdlA 92 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQNLKSVVECGVINNTLNEHVNKA 92 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCSCTHHHHHHHHHTTCCCHHHHHH
T ss_pred HhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhh-cCchhhhcHHHHHHHHHHhcchHHHHHHH
Confidence 35666666666665543 34455555555555555656666555554331 1111 112233444444444322211110
Q ss_pred HHhHHhcCCCCChhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhhhCCCc
Q 041942 394 KLMRDEYNIEPNIRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 394 ~~~~~~~~~~p~~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (498)
.......|+-+.-..+++.+++....+|.....++.+|-+-|...++-+++++.-++|++
T Consensus 93 ------------Ld~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 93 ------------LDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ------------HHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------HHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 111124677788888888888777788999999999999999999999999999999986
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.96 E-value=0.077 Score=38.68 Aligned_cols=51 Identities=6% Similarity=-0.027 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHHHHh----CCCchHHHHHHHHhhhCCCc
Q 041942 413 GDVELGRLANKRLLNMRKDESGDYVLLSNIYAS----RGEWNRVEKVRKLMDDSDIK 465 (498)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 465 (498)
.+.++|.+.|+++.+. .++.+...|+..|.. ..+.++|...|++..+.|..
T Consensus 73 ~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 4577888888887753 466778888888887 45899999999999998874
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=1.3 Score=39.53 Aligned_cols=259 Identities=9% Similarity=-0.013 Sum_probs=141.8
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHh--CCChHHHHH
Q 041942 177 LTAGYARRGELSMARSLFDEMPVRDLVSWNVMITGYAKQGEMEKANELFNEVPKRDVVSWNAMISGYVL--CGMNKQALE 254 (498)
Q Consensus 177 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~ 254 (498)
-+......|++..|..++..+...........+..... ...+........ .+......+..++.+ ..+.+.+..
T Consensus 160 R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~rla~~d~~~a~~ 235 (450)
T d1qsaa1 160 RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVARQDAENARL 235 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhcCC-CChhhhHHHHHHHHHHhccChhHHHH
Confidence 34445566777777777666543333333444443322 222333322222 233333333333333 256778888
Q ss_pred HHHHHHhCCCCCCHHHHH----HHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcC
Q 041942 255 MFEEMRSVGERPDDVTML----SLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330 (498)
Q Consensus 255 ~~~~m~~~g~~p~~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (498)
++......... +..... .+.......+..+.+...+ ......+ .+.......+......+++..+...+..+
T Consensus 236 ~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~-~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l 311 (450)
T d1qsaa1 236 MIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWR-DDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARL 311 (450)
T ss_dssp HHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHH-HHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHH-Hhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhc
Confidence 88777654322 222222 2222334456667777776 3333332 23333344555566778888888888888
Q ss_pred CCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCC--C
Q 041942 331 RDR---DVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEP--N 405 (498)
Q Consensus 331 ~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~ 405 (498)
... ...-.-=+..++...|+.+.|..+|..+.. .++ |-..+.+ .+.|..-. +-. .+..+ .
T Consensus 312 ~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa-~~Lg~~~~-------~~~-~~~~~~~~ 376 (450)
T d1qsaa1 312 PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYPMVAA-QRIGEEYE-------LKI-DKAPQNVD 376 (450)
T ss_dssp CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHHHHHH-HHTTCCCC-------CCC-CCCCSCCC
T ss_pred CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHHHHHH-HHcCCCCC-------CCc-CCCCccHH
Confidence 642 223334466788888999999988888764 233 3333322 22222100 000 00000 0
Q ss_pred -----------hhHHHhhCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhCCCchHHHHHHHHhh
Q 041942 406 -----------IRHYGVHGDVELGRLANKRLLNMRKDESGDYVLLSNIYASRGEWNRVEKVRKLMD 460 (498)
Q Consensus 406 -----------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 460 (498)
+......|....|.+.+..+.+. .++.-...++....+.|.++.|+....+..
T Consensus 377 ~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 22223789999999999888753 345567788899999999999998877764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=1.4 Score=39.47 Aligned_cols=283 Identities=8% Similarity=-0.036 Sum_probs=130.5
Q ss_pred hHHHHHHHHHhcCCcChHHH-HHHHHhhhhccCCChHHHHHhcccCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhC
Q 041942 21 LKQIQALVTINGFNSDSSAL-RELIYSGSVVIPGAINYAHKMFVKITEPDTFMYNTIIRGSAQSQNPLDAVFLYTQMEKC 99 (498)
Q Consensus 21 a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 99 (498)
..++...+.++.-.|-.... ...+. .+.+ .++.......+... +++...-.....+....|+...|...+..+-..
T Consensus 55 ~~~i~~Fl~~~p~~P~~~~lr~~~l~-~L~~-~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~ 131 (450)
T d1qsaa1 55 AVTVTNFVRANPTLPPARTLQSRFVN-ELAR-REDWRGLLAFSPEK-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH-HHHH-TTCHHHHHHHCCSC-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHH-HHHh-ccCHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 34555555554332222222 22233 4555 67777666655432 233443445566667777877777777766554
Q ss_pred CCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCChhHHHHhhccCCCCCcchHHHHHH
Q 041942 100 SIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLIYFHANCGDLNTASVLFDGDAKMDVVAWSSLTA 179 (498)
Q Consensus 100 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 179 (498)
| ...+.... .++..+.+.| .++...+-.-+......|+...|..+...+...........+.
T Consensus 132 ~-~~~p~~c~----------------~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~ 193 (450)
T d1qsaa1 132 G-KSQPNACD----------------KLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIIS 193 (450)
T ss_dssp S-SCCCTHHH----------------HHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred C-CCCchHHH----------------HHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHH
Confidence 4 11222222 2333333333 2333333344445555677777777766655433333333333
Q ss_pred HHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHh--cCChHHHHHHHhhCCC---CChhh----HHHHHHHHHhCCChH
Q 041942 180 GYARRGELSMARSLFDEMPVRDLVSWNVMITGYAK--QGEMEKANELFNEVPK---RDVVS----WNAMISGYVLCGMNK 250 (498)
Q Consensus 180 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~---~~~~~----~~~l~~~~~~~g~~~ 250 (498)
... +...+........ .+......+..++.+ ..+.+.|...+..... .+... ...+.......+..+
T Consensus 194 l~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 269 (450)
T d1qsaa1 194 LAN---NPNTVLTFARTTG-ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTD 269 (450)
T ss_dssp HHH---CGGGHHHHHHHSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCH
T ss_pred HHh---ChHhHHHHHhcCC-CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchH
Confidence 332 2223332222221 122222222222222 2455666666655432 11111 112222233345556
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHHHHHHHhcC
Q 041942 251 QALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIERAIEVFLGM 330 (498)
Q Consensus 251 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (498)
.+...+......+ .+.......+......+++..+...+ ..+..... ....-.--+..++...|+.++|...|..+
T Consensus 270 ~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~-~~l~~~~~-~~~r~~YW~gRa~~~~G~~~~A~~~~~~~ 345 (450)
T d1qsaa1 270 EQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWL-ARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQL 345 (450)
T ss_dssp HHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHH-HHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHH-HhcCcccc-cHHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence 6666666555443 23333333444445566777776666 33221111 11222234566667777777777777665
Q ss_pred CC
Q 041942 331 RD 332 (498)
Q Consensus 331 ~~ 332 (498)
..
T Consensus 346 a~ 347 (450)
T d1qsaa1 346 MQ 347 (450)
T ss_dssp HT
T ss_pred hc
Confidence 43
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.64 E-value=0.44 Score=33.40 Aligned_cols=140 Identities=9% Similarity=-0.005 Sum_probs=91.0
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcCCcchhhHHHHHHHHHhcCCHHH
Q 041942 243 YVLCGMNKQALEMFEEMRSVGERPDDVTMLSLLTACADLGDLEVGKKVHCTLLDMTSGVAKVLHGNALIDMYAKCGSIER 322 (498)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (498)
+...|..++..+++.+.... .+..-|+-+|--....-+-+.....++..-.-....|... ...++.++...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~N-lk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhc-HHHHHHHHHHhcc---
Confidence 44567788888888777653 2344555566555555666666666632222222222111 2344555554433
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCC
Q 041942 323 AIEVFLGMRDRDVSTWSTLIGGLAFHGFAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYNI 402 (498)
Q Consensus 323 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 402 (498)
+....+..+..+..+|+-++-.++++.+.+.+ +|++.....+..+|.+.|...++-+++.+.-+ .|+
T Consensus 85 -----------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe-~G~ 151 (161)
T d1wy6a1 85 -----------LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK-KGE 151 (161)
T ss_dssp -----------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTC
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-HhH
Confidence 33455666778888999999999999877754 78888888899999999999999999988877 454
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.38 E-value=0.023 Score=40.42 Aligned_cols=65 Identities=9% Similarity=0.012 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHhhc---CCHHHHHHHHHHhHHhcCCCCC---------hhHHHhhCChHHHHHHHHHHHccCCCCCch
Q 041942 368 PTEITFVGVLVACSHA---GKVEEGKKYFKLMRDEYNIEPN---------IRHYGVHGDVELGRLANKRLLNMRKDESGD 435 (498)
Q Consensus 368 p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~p~---------~~~y~~~g~~~~a~~~~~~~~~~~~~~~~~ 435 (498)
|+..|--....++++. .+.++++.+++.+.+. .|. ...|.+.|++++|.+.++++++++|++..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 4444444445555544 3456777777777662 333 222337777777777777777777777544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.34 E-value=0.61 Score=33.48 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=10.3
Q ss_pred ChHHHHHHHHHHHhCC
Q 041942 248 MNKQALEMFEEMRSVG 263 (498)
Q Consensus 248 ~~~~a~~~~~~m~~~g 263 (498)
++++|...|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4566667776666665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.57 E-value=0.86 Score=32.02 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhhcCCHHHHHHHHHHhHHhcCCCCC
Q 041942 350 FAEESIAMFREMQRLKVRPT-E-ITFVGVLVACSHAGKVEEGKKYFKLMRDEYNIEPN 405 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 405 (498)
+.++++.++++..+. .|. . ..+-.|.-+|.+.|++++|.+.++.+.+ +.|+
T Consensus 53 d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~---ieP~ 105 (124)
T d2pqrb1 53 DERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERN 105 (124)
T ss_dssp HHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTT
T ss_pred HHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc---cCCC
Confidence 345666666666653 232 2 3444555566666667666666666665 4555
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.72 E-value=3.8 Score=26.98 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhHHhcC
Q 041942 350 FAEESIAMFREMQRLKVRPTEITFVGVLVACSHAGKVEEGKKYFKLMRDEYN 401 (498)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 401 (498)
+.=++.+-++.+...++.|++......+++|.+.+++..|.++++-++.+.|
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~ 72 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG 72 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4446667777788888899999999999999999999999999998887533
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.96 E-value=4.6 Score=26.58 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHhhcccchhhHHHHHHHHHHhCCCCChHHHHHHH
Q 041942 85 NPLDAVFLYTQMEKCSIKPNKFTFSFVLKACTRLLYRNMGFCVHGKIVKYGFEFNRFVRNSLI 147 (498)
Q Consensus 85 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 147 (498)
+.-++.+-++.+....+.|++......+++|-|.+++..|.++++-.+... .++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 344556666666666677777777777777777777777777777666432 23344554444
|