Citrus Sinensis ID: 041967

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MKSNLSTEDDDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKNFERERQRKQAGADREALSGLRDGMASDFFSLCFCNIVGANR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHcccEEcccccEccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccc
Coil and Loop (DISEMBL)
mksnlsteddddivesdieldntdvmepdndpsqkmgdpsvEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYvklnkpnaaIRDAYVALetnpdsakgykiRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKNFERERQRKQAGADREALSglrdgmasDFFSLCFCNIVGANR
Flexible Loop (DISEMBL)
mksnlsteddddivesdieldntdvmepdndpsqkmgdpSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVAletnpdsakgyKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMAlkkvepnarriqehrrkyerlrkerelknfererqrkqagadrealSGLRDGMASDFFSLCFCNIVGANR
Low Complexity Region (SEG)
MKSNLSTeddddivesdieldNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQehrrkyerlrkerelknfererQRKQAGADREALSGLRDGMASDFFSLCFCNIVGANR
Disordered region (IsUnstruct)
*******************************************************LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGM*****************************************************MASDFFSLCFCNIVG***
Disordered Region (DISOPRED)
**********************************************MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARR************************************************************
Disordered Region (DISEMBL)
**********DDIVESDIELDNTDVMEPD************EVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKNF***************LSGLRDGMASDFFSLCFCNIVGANR
Disordered Region (DISPRO)
*********************NTDVMEPDND*SQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKNFERER*RK***********LRDGMASDFFSLCFCNIVG***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSNLSTEDDDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxADREALSGLRDGMASDFFSLCFCNIVGANR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
Q8VWG7	380	TPR repeat-containing thi	yes	no	0.867	0.518	0.685	1e-74
Q6ES52	317	TPR repeat-containing thi	yes	no	0.876	0.627	0.66	3e-68
Q93YR3	441	FAM10 family protein At4g	no	no	0.801	0.412	0.672	5e-64
Q5ZLF0	361	Hsc70-interacting protein	yes	no	0.828	0.520	0.553	2e-52
Q8NFI4	369	Putative protein FAM10A5	yes	no	0.744	0.457	0.562	5e-47
Q8IZP2	240	Putative protein FAM10A4	yes	no	0.735	0.695	0.562	6e-47
Q5RF31	369	Hsc70-interacting protein	yes	no	0.691	0.425	0.566	6e-44
Q99L47	371	Hsc70-interacting protein	yes	no	0.691	0.423	0.566	7e-44
P50502	369	Hsc70-interacting protein	yes	no	0.691	0.425	0.566	7e-44
P50503	368	Hsc70-interacting protein	yes	no	0.735	0.453	0.541	3e-42

>sp|Q8VWG7|TDX_ARATH TPR repeat-containing thioredoxin TDX OS=Arabidopsis thaliana GN=TDX PE=1 SV=1

 Score =  279 bits (714), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 165/197 (83%)

Query: 13  IVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIG 72
           I+ESD+ELDN+DV+EPDN+P Q MGDP+ EVT+E RD A   K KA++ IS+G+ ++AI 
Sbjct: 74  IMESDVELDNSDVVEPDNEPPQPMGDPTAEVTDENRDDAQSEKSKAMEAISDGRFDEAIE 133

Query: 73  QLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL 132
            LT+A+MLNPTSAILYA RA V++K+ KPNAAIRDA VAL+ N DSAKGYK RGMA+A L
Sbjct: 134 HLTKAVMLNPTSAILYATRASVFLKVKKPNAAIRDANVALQFNSDSAKGYKSRGMAKAML 193

Query: 133 GQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKNFERERQ 192
           GQWEEAA DLHVASKLDYDEEIG  LKKVEPNA+RI+EHRRKY+RLRKE+EL+  ERER+
Sbjct: 194 GQWEEAAADLHVASKLDYDEEIGTMLKKVEPNAKRIEEHRRKYQRLRKEKELQRAERERR 253

Query: 193 RKQAGADREALSGLRDG 209
           ++Q   +REA + L DG
Sbjct: 254 KQQEAQEREAQAALNDG 270

Thiol-disulfide oxidoreductase that possesses insulin disulfide bonds reducing activity, disulfide reductase, foldase chaperone and holdase chaperone activities. Heat shock causes oligomerization and formation of high molecular weiht (HMW) complexes with concomitant functional switching from a disulfide reductase and foldase chaperone to a holdase chaperone. May interact with HSP70 proteins through the TPR repeats.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6ES52|TDX_ORYSJ TPR repeat-containing thioredoxin TDX OS=Oryza sativa subsp. japonica GN=Os09g0401200 PE=2 SV=1

 Score =  258 bits (658), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/200 (66%), Positives = 159/200 (79%), Gaps = 1/200 (0%)

Query: 10  DDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLED 69
           +D+I+ESDIEL+  + +EPDNDP QKMGDPSVEV++E RD A + K K VD  SEGKL++
Sbjct: 10  EDEIMESDIELEG-EAVEPDNDPPQKMGDPSVEVSDEKRDQAQLCKNKGVDAFSEGKLDE 68

Query: 70  AIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR 129
           AI  LTEAI+LNPTSAI YA RA ++VK  KPNAAIRDA  AL+ NPDSAKGYK RGMA+
Sbjct: 69  AIEHLTEAIVLNPTSAIAYATRAVIFVKSKKPNAAIRDADAALKINPDSAKGYKSRGMAK 128

Query: 130 ARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKNFER 189
           A LG+WEEAA DL +A+KLDYDEEIG  LKKVEPN  +I+EHR+KYERLRKER++K  E 
Sbjct: 129 AMLGKWEEAAQDLRMAAKLDYDEEIGAELKKVEPNVLKIEEHRKKYERLRKERDIKKAEM 188

Query: 190 ERQRKQAGADREALSGLRDG 209
           E+QRK A     A + L+DG
Sbjct: 189 EKQRKHAEEVSAASAALKDG 208

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions and act as chaperone under heat shock. May interact with HSP70 proteins through the TPR repeats.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93YR3|F10AL_ARATH FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1

 Score =  244 bits (622), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 123/183 (67%), Positives = 145/183 (79%), Gaps = 1/183 (0%)

Query: 16  SDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLT 75
           SD+EL+  D +EPDNDP QKMGD SVEVT+E R+AA   K KA++ +SEG  ++AI  LT
Sbjct: 89  SDVELEG-DTVEPDNDPPQKMGDSSVEVTDENREAAQEAKGKAMEALSEGNFDEAIEHLT 147

Query: 76  EAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW 135
            AI LNPTSAI+Y  RA VY+KL KPNAAIRDA  ALE NPDSAKGYK RGMARA LG+W
Sbjct: 148 RAITLNPTSAIMYGNRASVYIKLKKPNAAIRDANAALEINPDSAKGYKSRGMARAMLGEW 207

Query: 136 EEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKNFERERQRKQ 195
            EAA DLH+AS +DYDEEI   LKKVEPNA +++EHRRKY+RLRKERE K  ER+R R++
Sbjct: 208 AEAAKDLHLASTIDYDEEISAVLKKVEPNAHKLEEHRRKYDRLRKEREDKKAERDRLRRR 267

Query: 196 AGA 198
           A A
Sbjct: 268 AEA 270

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZLF0|F10A1_CHICK Hsc70-interacting protein OS=Gallus gallus GN=ST13 PE=2 SV=1

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/197 (55%), Positives = 140/197 (71%), Gaps = 9/197 (4%)

Query: 15  ESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQL 74
           ESD+E+DN  V+EPDND  Q+MGD +VEVTEEM D AN  K++A++ +SEG L+ A+   
Sbjct: 76  ESDLEIDNEGVIEPDNDDPQEMGDENVEVTEEMMDQANEKKMEAINALSEGDLQKAVNLF 135

Query: 75  TEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ 134
           T+AI LNP  AILYA RA V+VKL KPNAAIRD   A++ NPDSA+ YK RG A   LG 
Sbjct: 136 TDAIKLNPCLAILYAKRASVFVKLQKPNAAIRDCDRAIKINPDSAQTYKWRGKAHRLLGH 195

Query: 135 WEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKNF------- 187
           WEEAA+DL +A KLDYDE+    LK+V+P A++I EHRRKYER R+E+E+K         
Sbjct: 196 WEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEKEIKERMERVKKA 255

Query: 188 --ERERQRKQAGADREA 202
             E ER +++  A R+A
Sbjct: 256 REEHERAQREEEARRQA 272

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Gallus gallus (taxid: 9031)

>sp|Q8NFI4|F10A5_HUMAN Putative protein FAM10A5 OS=Homo sapiens GN=ST13P5 PE=5 SV=1

 Score =  187 bits (475), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 122/169 (72%)

Query: 9   DDDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLE 68
           D+    ESD+E+D   V+EPD D  Q+MGD +VE+TEEM D AN  K+ A++++++G+L+
Sbjct: 72  DEPSTEESDLEIDKEGVIEPDTDAPQEMGDENVEITEEMMDQANDKKVAAIEVLNDGELQ 131

Query: 69  DAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA 128
            AI   T+AI LNP  AILYA RA V+VKL KPNAAI+D   A+E NPDSA+ YK RG A
Sbjct: 132 KAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIQDCDRAIEINPDSAQPYKWRGKA 191

Query: 129 RARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYER 177
              LG WEEAA+DL  A KLDYDE+    LK+V+P A++I EH RKYER
Sbjct: 192 HRLLGHWEEAAHDLAFACKLDYDEDASAMLKEVQPRAQKIAEHWRKYER 240

Homo sapiens (taxid: 9606)

>sp|Q8IZP2|ST134_HUMAN Putative protein FAM10A4 OS=Homo sapiens GN=ST13P4 PE=5 SV=1

 Score =  187 bits (474), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 94/167 (56%), Positives = 122/167 (73%)

Query: 15  ESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQL 74
           ESD+E+D   V+EPD D  Q+MGD + E+TEE+ D AN  K+ A++ +++G+L+ AI   
Sbjct: 74  ESDLEIDKEGVIEPDTDAPQEMGDENAEITEEVMDQANDKKVAAIEALNDGELQKAIDLF 133

Query: 75  TEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ 134
           T+AI LNP  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG 
Sbjct: 134 TDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKRRGKAHRLLGH 193

Query: 135 WEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKE 181
           WEEAA+DL +A K DYDE+    LK+V+P A++I EH+RKYER R+E
Sbjct: 194 WEEAAHDLALACKFDYDEDASAMLKEVQPRAQKIAEHQRKYERKREE 240

Homo sapiens (taxid: 9606)

>sp|Q5RF31|F10A1_PONAB Hsc70-interacting protein OS=Pongo abelii GN=ST13 PE=2 SV=1

 Score =  177 bits (448), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 114/157 (72%)

Query: 15  ESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQL 74
           ESD+E+D   V+EPD D  Q+MGD + E+TEEM D AN  K+ A++ +++G+L+ AI   
Sbjct: 78  ESDLEIDKEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLF 137

Query: 75  TEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ 134
           T+AI LNP  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG 
Sbjct: 138 TDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGH 197

Query: 135 WEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEH 171
           WEEAA+DL +A KLDYDE+    LK+V+P A++I EH
Sbjct: 198 WEEAAHDLALACKLDYDEDASAMLKEVQPKAQKIAEH 234

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Pongo abelii (taxid: 9601)

>sp|Q99L47|F10A1_MOUSE Hsc70-interacting protein OS=Mus musculus GN=St13 PE=2 SV=1

 Score =  177 bits (448), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 114/157 (72%)

Query: 15  ESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQL 74
           ESD+E+DN  V+EPD D  Q+MGD + E+TEEM D AN  K  A++ +++G+L+ AI   
Sbjct: 77  ESDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDEANEKKGAAIEALNDGELQKAIDLF 136

Query: 75  TEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ 134
           T+AI LNP  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG 
Sbjct: 137 TDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGH 196

Query: 135 WEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEH 171
           WEEAA+DL +A KLDYDE+    L++V+P A++I EH
Sbjct: 197 WEEAAHDLALACKLDYDEDASAMLREVQPRAQKIAEH 233

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Mus musculus (taxid: 10090)

>sp|P50502|F10A1_HUMAN Hsc70-interacting protein OS=Homo sapiens GN=ST13 PE=1 SV=2

 Score =  177 bits (448), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 114/157 (72%)

Query: 15  ESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQL 74
           ESD+E+D   V+EPD D  Q+MGD + E+TEEM D AN  K+ A++ +++G+L+ AI   
Sbjct: 78  ESDLEIDKEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLF 137

Query: 75  TEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ 134
           T+AI LNP  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG 
Sbjct: 138 TDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGH 197

Query: 135 WEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEH 171
           WEEAA+DL +A KLDYDE+    LK+V+P A++I EH
Sbjct: 198 WEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEH 234

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Homo sapiens (taxid: 9606)

>sp|P50503|F10A1_RAT Hsc70-interacting protein OS=Rattus norvegicus GN=St13 PE=1 SV=1

 Score =  172 bits (435), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 116/168 (69%), Gaps = 1/168 (0%)

Query: 4   NLSTEDDDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLIS 63
           N+ TE+     ESD+E+DN  V+E D D  Q+MGD + E+TE M D AN  K  A+D ++
Sbjct: 67  NIKTEEPSS-EESDLEIDNEGVIEADTDAPQEMGDENAEITEAMMDEANEKKGAAIDALN 125

Query: 64  EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYK 123
           +G+L+ AI   T+AI LNP  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK
Sbjct: 126 DGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYK 185

Query: 124 IRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEH 171
            RG A   LG WEEAA DL +A KLDYDE+    L++V+P A++I EH
Sbjct: 186 WRGKAHRLLGHWEEAARDLALACKLDYDEDASAMLREVQPRAQKIAEH 233

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
260401130	328	tetratricopeptide domain-containing thio	0.951	0.658	0.972	1e-116
255579901	378	Hsc70-interacting protein, putative [Ric	0.894	0.537	0.738	5e-80
224135621	385	predicted protein [Populus trichocarpa]	0.911	0.537	0.717	5e-77
164665427	385	Hsp70 interacting protein/thioredoxin ch	0.916	0.540	0.702	7e-75
297830422	380	tetraticopeptide domain-containing thior	0.898	0.536	0.676	4e-74
225456185	385	PREDICTED: TPR repeat-containing thiored	0.916	0.540	0.693	1e-73
356524704	379	PREDICTED: TPR repeat-containing thiored	0.903	0.540	0.663	1e-73
297734343	348	unnamed protein product [Vitis vinifera]	0.916	0.597	0.693	2e-73
255646412	379	unknown [Glycine max]	0.903	0.540	0.658	3e-73
145332619	373	TPR repeat-containing thioredoxin TDX [A	0.867	0.528	0.685	5e-73

>gi|260401130|gb|ACX37093.1| tetratricopeptide domain-containing thioredoxin [Citrus sinensis]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/216 (97%), Positives = 210/216 (97%)

Query: 1   MKSNLSTEDDDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVD 60
           MKSNLSTEDDDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVD
Sbjct: 11  MKSNLSTEDDDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVD 70

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
           LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK
Sbjct: 71  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 130

Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRK 180
           GYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRK
Sbjct: 131 GYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRK 190

Query: 181 ERELKNFERERQRKQAGADREALSGLRDGMASDFFS 216
           ERELKNFERERQRKQAGADREALSGLRDG      S
Sbjct: 191 ERELKNFERERQRKQAGADREALSGLRDGQVMGIHS 226

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579901|ref|XP_002530786.1| Hsc70-interacting protein, putative [Ricinus communis] gi|223529641|gb|EEF31587.1| Hsc70-interacting protein, putative [Ricinus communis]

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 171/203 (84%)

Query: 7   TEDDDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGK 66
           +E+ DD++ESD+ELD +D++EPDND  QKMGDP  EVTEE +DAA   KLKA+D ISEGK
Sbjct: 68  SEEGDDVIESDVELDESDIVEPDNDSPQKMGDPETEVTEERQDAAQTDKLKAMDAISEGK 127

Query: 67  LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126
           L +AI  LTEAIMLNPTSAILYA RA V+ KL KPNAAIRDA  ALE NPDSAKGYKIRG
Sbjct: 128 LGEAIDHLTEAIMLNPTSAILYATRANVFTKLKKPNAAIRDANAALEINPDSAKGYKIRG 187

Query: 127 MARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKN 186
           MARA LG WEEAA+DLH+ASKLDYDEEIG+ LKKVEPNA+RIQEHRRKYERLRKERELK 
Sbjct: 188 MARAMLGLWEEAASDLHLASKLDYDEEIGLVLKKVEPNAKRIQEHRRKYERLRKERELKK 247

Query: 187 FERERQRKQAGADREALSGLRDG 209
            E ERQR+    ++EALS L++G
Sbjct: 248 AECERQRQVKAQEQEALSVLKEG 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135621|ref|XP_002322119.1| predicted protein [Populus trichocarpa] gi|222869115|gb|EEF06246.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 150/209 (71%), Positives = 171/209 (81%), Gaps = 2/209 (0%)

Query: 3   SNLSTEDDDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLI 62
           S    EDDD+IVESDI+LDNTDV+EPDN P QKMGDP+VEVTEE RDAA   K KA+D I
Sbjct: 69  SKRPIEDDDEIVESDIDLDNTDVVEPDNHPPQKMGDPAVEVTEEKRDAAKTEKSKAMDAI 128

Query: 63  SEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGY 122
           SEGKLE+AI  LTEAI LNPTSAILYA R  V+VKL KP AAIRDA  AL  N +SAKGY
Sbjct: 129 SEGKLEEAIDHLTEAITLNPTSAILYATRGSVFVKLKKPLAAIRDADAALAINLNSAKGY 188

Query: 123 KIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKER 182
           K+RGMARA LGQWE+AA DLH ASKLDYD+EIG+ LKKVEPNAR+I+EHRRKYERLRKER
Sbjct: 189 KVRGMARAILGQWEQAATDLHEASKLDYDDEIGLVLKKVEPNARKIEEHRRKYERLRKER 248

Query: 183 ELKN--FERERQRKQAGADREALSGLRDG 209
           ELK    ER++Q +   ++REALS L++G
Sbjct: 249 ELKKAELERKQQAEAQVSEREALSALKEG 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164665427|gb|AAK64512.2| Hsp70 interacting protein/thioredoxin chimera [Vitis labrusca]

 Score =  285 bits (730), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 149/212 (70%), Positives = 175/212 (82%), Gaps = 4/212 (1%)

Query: 2   KSNLSTEDD---DDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKA 58
           K+NL +EDD   DDIVESDIELD+TDV+EPDNDP QKMGD S++VTEE +DAA M K KA
Sbjct: 64  KTNLCSEDDKFEDDIVESDIELDDTDVVEPDNDPPQKMGDLSIDVTEENQDAAQMLKSKA 123

Query: 59  VDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS 118
           ++ ISEGKL++A   LTEAIMLNP+SAILYA RA VYVKL KPNAAIRDA  AL+ NPDS
Sbjct: 124 MEAISEGKLDEARDNLTEAIMLNPSSAILYATRASVYVKLKKPNAAIRDADAALKINPDS 183

Query: 119 AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERL 178
           AKGYKIRGMARA LG WEEAA DLHVAS+LDYDEEI + LKKVEPNAR+I+EHRRKY RL
Sbjct: 184 AKGYKIRGMARAMLGLWEEAATDLHVASRLDYDEEIALVLKKVEPNARKIEEHRRKYARL 243

Query: 179 RKERELKNF-ERERQRKQAGADREALSGLRDG 209
            KEREL+ +  +++Q++    D EA + L+DG
Sbjct: 244 CKERELRKYGHQKQQQQAQPHDPEAAAALKDG 275

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830422|ref|XP_002883093.1| tetraticopeptide domain-containing thioredoxin [Arabidopsis lyrata subsp. lyrata] gi|297328933|gb|EFH59352.1| tetraticopeptide domain-containing thioredoxin [Arabidopsis lyrata subsp. lyrata]

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 138/204 (67%), Positives = 167/204 (81%)

Query: 13  IVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIG 72
           I+ESD+ELDN DV+EPDN+P Q MGDP+ EVT+E RD A + K KA++ IS+GK ++AI 
Sbjct: 74  IMESDVELDNADVVEPDNEPPQPMGDPTAEVTDENRDEAQLEKSKAMEEISDGKFDEAIE 133

Query: 73  QLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL 132
            LT+A+MLNPTSAILYA RA V++K+ KPNAAIRDA VAL+ NPDSAKGYK RGMARA L
Sbjct: 134 HLTKAVMLNPTSAILYATRATVFLKVKKPNAAIRDANVALQFNPDSAKGYKSRGMARAML 193

Query: 133 GQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKNFERERQ 192
           GQWE+AA DLHVASKLDYDEEIG  LKKVEPNA+RI+EHRRKY+RLRKE+EL+  ERER+
Sbjct: 194 GQWEDAAADLHVASKLDYDEEIGTMLKKVEPNAKRIEEHRRKYQRLRKEKELQRAERERR 253

Query: 193 RKQAGADREALSGLRDGMASDFFS 216
           ++Q   +REA + L DG      S
Sbjct: 254 QQQEAQEREAQAALNDGQVISIHS 277

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456185|ref|XP_002282720.1| PREDICTED: TPR repeat-containing thioredoxin TDX-like [Vitis vinifera]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 147/212 (69%), Positives = 173/212 (81%), Gaps = 4/212 (1%)

Query: 2   KSNLSTEDD---DDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKA 58
           K+NL +EDD   DDIVESDIELD+TDV+EPDNDP QKMGD S++VTEE +DAA M K KA
Sbjct: 64  KTNLCSEDDKFEDDIVESDIELDDTDVVEPDNDPPQKMGDLSIDVTEENQDAAQMLKSKA 123

Query: 59  VDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS 118
           ++ ISEGKL++A   LTEAIMLNP+SAILYA RA VYVKL KPNAAIRDA  AL+ NPDS
Sbjct: 124 MEAISEGKLDEATDNLTEAIMLNPSSAILYATRASVYVKLKKPNAAIRDADAALKINPDS 183

Query: 119 AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERL 178
           AKGYKIRGMARA LG WEEAA DLHVAS+LD+DEEI + LKKVEPNA +I+EHRRKY RL
Sbjct: 184 AKGYKIRGMARAMLGLWEEAATDLHVASRLDHDEEIALVLKKVEPNAHKIEEHRRKYARL 243

Query: 179 RKEREL-KNFERERQRKQAGADREALSGLRDG 209
            KEREL K+  +++Q++    D EA +  +DG
Sbjct: 244 CKERELRKSGHQKQQQQAQPHDSEAAAAFKDG 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524704|ref|XP_003530968.1| PREDICTED: TPR repeat-containing thioredoxin TDX-like [Glycine max]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/217 (66%), Positives = 169/217 (77%), Gaps = 12/217 (5%)

Query: 2   KSNLSTEDDDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDL 61
           KS+      +DIVESDIELDN DV+EPDNDP QKMGDPS E+TEE RDAA + K KAVD 
Sbjct: 56  KSDPPLSAQNDIVESDIELDNADVVEPDNDPPQKMGDPSAEITEEQRDAAQLAKSKAVDA 115

Query: 62  ISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKG 121
           +S+G L++A+ QLTEAI+LNP SAILYA RA +Y+KL KPNAAIRDA  AL+ NPDSAKG
Sbjct: 116 MSQGNLDEALAQLTEAILLNPQSAILYATRASIYMKLKKPNAAIRDADTALKINPDSAKG 175

Query: 122 YKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKE 181
           YKIRGM+RA LG WEEAA+DLHVASKLDYDEEI MALKKVEPNA +I+EHRRKYERLRK+
Sbjct: 176 YKIRGMSRAMLGLWEEAASDLHVASKLDYDEEISMALKKVEPNALKIEEHRRKYERLRKQ 235

Query: 182 RELKNFERERQRKQAGADRE---------ALSGLRDG 209
           ++ K   R   + +A   +E         ALS L+DG
Sbjct: 236 KQQK---RAPIKTEAPIKKEQETEAQVQAALSALKDG 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734343|emb|CBI15590.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 147/212 (69%), Positives = 173/212 (81%), Gaps = 4/212 (1%)

Query: 2   KSNLSTEDD---DDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKA 58
           K+NL +EDD   DDIVESDIELD+TDV+EPDNDP QKMGD S++VTEE +DAA M K KA
Sbjct: 27  KTNLCSEDDKFEDDIVESDIELDDTDVVEPDNDPPQKMGDLSIDVTEENQDAAQMLKSKA 86

Query: 59  VDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS 118
           ++ ISEGKL++A   LTEAIMLNP+SAILYA RA VYVKL KPNAAIRDA  AL+ NPDS
Sbjct: 87  MEAISEGKLDEATDNLTEAIMLNPSSAILYATRASVYVKLKKPNAAIRDADAALKINPDS 146

Query: 119 AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERL 178
           AKGYKIRGMARA LG WEEAA DLHVAS+LD+DEEI + LKKVEPNA +I+EHRRKY RL
Sbjct: 147 AKGYKIRGMARAMLGLWEEAATDLHVASRLDHDEEIALVLKKVEPNAHKIEEHRRKYARL 206

Query: 179 RKEREL-KNFERERQRKQAGADREALSGLRDG 209
            KEREL K+  +++Q++    D EA +  +DG
Sbjct: 207 CKERELRKSGHQKQQQQAQPHDSEAAAAFKDG 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646412|gb|ACU23685.1| unknown [Glycine max]

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 143/217 (65%), Positives = 168/217 (77%), Gaps = 12/217 (5%)

Query: 2   KSNLSTEDDDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDL 61
           KS+      +DIVESDIELDN DV+EPDNDP QKMGDPS E+TEE RDAA + K KAVD 
Sbjct: 56  KSDPPLSAQNDIVESDIELDNADVVEPDNDPPQKMGDPSAEITEEQRDAAQLAKSKAVDA 115

Query: 62  ISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKG 121
           +S+G L++A+ QLTEAI+LNP SAILYA RA +Y+KL KPNAAIRDA  AL+ NPDSAKG
Sbjct: 116 MSQGNLDEALAQLTEAILLNPQSAILYATRASIYMKLKKPNAAIRDADTALKINPDSAKG 175

Query: 122 YKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKE 181
           YKIRGM+RA LG WEEAA+D HVASKLDYDEEI MALKKVEPNA +I+EHRRKYERLRK+
Sbjct: 176 YKIRGMSRAMLGLWEEAASDFHVASKLDYDEEISMALKKVEPNALKIEEHRRKYERLRKQ 235

Query: 182 RELKNFERERQRKQAGADRE---------ALSGLRDG 209
           ++ K   R   + +A   +E         ALS L+DG
Sbjct: 236 KQQK---RAPIKTEAPIKKEQETEAQVQAALSALKDG 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332619|ref|NP_001078175.1| TPR repeat-containing thioredoxin TDX [Arabidopsis thaliana] gi|332642499|gb|AEE76020.1| TPR repeat-containing thioredoxin TDX [Arabidopsis thaliana]

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 165/197 (83%)

Query: 13  IVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIG 72
           I+ESD+ELDN+DV+EPDN+P Q MGDP+ EVT+E RD A   K KA++ IS+G+ ++AI 
Sbjct: 67  IMESDVELDNSDVVEPDNEPPQPMGDPTAEVTDENRDDAQSEKSKAMEAISDGRFDEAIE 126

Query: 73  QLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL 132
            LT+A+MLNPTSAILYA RA V++K+ KPNAAIRDA VAL+ N DSAKGYK RGMA+A L
Sbjct: 127 HLTKAVMLNPTSAILYATRASVFLKVKKPNAAIRDANVALQFNSDSAKGYKSRGMAKAML 186

Query: 133 GQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKNFERERQ 192
           GQWEEAA DLHVASKLDYDEEIG  LKKVEPNA+RI+EHRRKY+RLRKE+EL+  ERER+
Sbjct: 187 GQWEEAAADLHVASKLDYDEEIGTMLKKVEPNAKRIEEHRRKYQRLRKEKELQRAERERR 246

Query: 193 RKQAGADREALSGLRDG 209
           ++Q   +REA + L DG
Sbjct: 247 KQQEAQEREAQAALNDG 263

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2088560	380	TDX "tetraticopeptide domain-c	0.828	0.494	0.590	1.9e-53
TAIR|locus:2132579	441	HIP1 "HSP70-interacting protei	0.643	0.331	0.678	8.5e-49
UNIPROTKB|Q5ZLF0	361	ST13 "Hsc70-interacting protei	0.647	0.407	0.585	2.6e-40
UNIPROTKB|A7E3S8	369	ST13 "Uncharacterized protein"	0.647	0.398	0.571	1.4e-39
UNIPROTKB|P50502	369	ST13 "Hsc70-interacting protei	0.634	0.390	0.569	2.1e-38
UNIPROTKB|Q8NFI4	369	ST13P5 "Putative protein FAM10	0.634	0.390	0.569	2.1e-38
MGI|MGI:1917606	371	St13 "suppression of tumorigen	0.647	0.396	0.557	4.3e-38
UNIPROTKB|Q8IZP2	240	ST13P4 "Putative protein FAM10	0.634	0.6	0.555	1.5e-37
RGD|621312	368	St13 "suppression of tumorigen	0.647	0.399	0.551	6.3e-37
FB|FBgn0260484	377	HIP "Hsc/Hsp70-interacting pro	0.638	0.384	0.475	4.4e-29

TAIR|locus:2088560 TDX "tetraticopeptide domain-containing thioredoxin" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 111/188 (59%), Positives = 136/188 (72%)

Query:    22 NTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLN 81
             N+DV+EPDN+P Q MGDP+ EVT+E RD A   K KA++ IS+G+ ++AI  LT+A+MLN
Sbjct:    83 NSDVVEPDNEPPQPMGDPTAEVTDENRDDAQSEKSKAMEAISDGRFDEAIEHLTKAVMLN 142

Query:    82 PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAAND 141
             PTSAILYA RA V++K+ KPNAAIRDA VAL+ N DSAKGYK RGMA+A LGQWEEAA D
Sbjct:   143 PTSAILYATRASVFLKVKKPNAAIRDANVALQFNSDSAKGYKSRGMAKAMLGQWEEAAAD 202

Query:   142 LHVASKLDYDEEIGMALKKVEPNARRIQXXXXXXXXXXXXXXXXXXXXXXQRKQAGADRE 201
             LHVASKLDYDEEIG  LKKVEPNA+RI+                      +++Q   +RE
Sbjct:   203 LHVASKLDYDEEIGTMLKKVEPNAKRIEEHRRKYQRLRKEKELQRAERERRKQQEAQERE 262

Query:   202 ALSGLRDG 209
             A + L DG
Sbjct:   263 AQAALNDG 270

GO:0005737 "cytoplasm" evidence=ISM

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0006457 "protein folding" evidence=IDA

GO:0010286 "heat acclimation" evidence=IMP

GO:0051259 "protein oligomerization" evidence=IDA

TAIR|locus:2132579 HIP1 "HSP70-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 99/146 (67%), Positives = 115/146 (78%)

Query:    24 DVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT 83
             D +EPDNDP QKMGD SVEVT+E R+AA   K KA++ +SEG  ++AI  LT AI LNPT
Sbjct:    96 DTVEPDNDPPQKMGDSSVEVTDENREAAQEAKGKAMEALSEGNFDEAIEHLTRAITLNPT 155

Query:    84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLH 143
             SAI+Y  RA VY+KL KPNAAIRDA  ALE NPDSAKGYK RGMARA LG+W EAA DLH
Sbjct:   156 SAIMYGNRASVYIKLKKPNAAIRDANAALEINPDSAKGYKSRGMARAMLGEWAEAAKDLH 215

Query:   144 VASKLDYDEEIGMALKKVEPNARRIQ 169
             +AS +DYDEEI   LKKVEPNA +++
Sbjct:   216 LASTIDYDEEISAVLKKVEPNAHKLE 241

GO:0005737 "cytoplasm" evidence=ISM

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q5ZLF0 ST13 "Hsc70-interacting protein" [Gallus gallus (taxid:9031)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 86/147 (58%), Positives = 108/147 (73%)

Query:    22 NTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLN 81
             N  V+EPDND  Q+MGD +VEVTEEM D AN  K++A++ +SEG L+ A+   T+AI LN
Sbjct:    83 NEGVIEPDNDDPQEMGDENVEVTEEMMDQANEKKMEAINALSEGDLQKAVNLFTDAIKLN 142

Query:    82 PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAAND 141
             P  AILYA RA V+VKL KPNAAIRD   A++ NPDSA+ YK RG A   LG WEEAA+D
Sbjct:   143 PCLAILYAKRASVFVKLQKPNAAIRDCDRAIKINPDSAQTYKWRGKAHRLLGHWEEAAHD 202

Query:   142 LHVASKLDYDEEIGMALKKVEPNARRI 168
             L +A KLDYDE+    LK+V+P A++I
Sbjct:   203 LALACKLDYDEDASAMLKEVQPRAQKI 229

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|A7E3S8 ST13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 84/147 (57%), Positives = 107/147 (72%)

Query:    22 NTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLN 81
             N  V+EPD D  Q+MGD +VE+TEEM D AN  K+ A+D +++G+L+ AI   T+AI LN
Sbjct:    85 NEGVIEPDTDAPQEMGDENVEITEEMMDQANDKKVAAIDALNDGELQKAIDLFTDAIKLN 144

Query:    82 PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAAND 141
             P  AILYA RA V++KL KPNAAIRD   A+E NPDSA+ YK RG A   LG WEEAA+D
Sbjct:   145 PRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHD 204

Query:   142 LHVASKLDYDEEIGMALKKVEPNARRI 168
             L +A KLDYDE+    LK+V+P A++I
Sbjct:   205 LALACKLDYDEDASAMLKEVQPRAQKI 231

GO:0006950 "response to stress" evidence=IEA

UNIPROTKB|P50502 ST13 "Hsc70-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 82/144 (56%), Positives = 105/144 (72%)

Query:    25 VMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS 84
             V+EPD D  Q+MGD + E+TEEM D AN  K+ A++ +++G+L+ AI   T+AI LNP  
Sbjct:    88 VIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDAIKLNPRL 147

Query:    85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHV 144
             AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG WEEAA+DL +
Sbjct:   148 AILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAL 207

Query:   145 ASKLDYDEEIGMALKKVEPNARRI 168
             A KLDYDE+    LK+V+P A++I
Sbjct:   208 ACKLDYDEDASAMLKEVQPRAQKI 231

GO:0005829 "cytosol" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032564 "dATP binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0061084 "negative regulation of protein refolding" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0030674 "protein binding, bridging" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q8NFI4 ST13P5 "Putative protein FAM10A5" [Homo sapiens (taxid:9606)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 82/144 (56%), Positives = 106/144 (73%)

Query:    25 VMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS 84
             V+EPD D  Q+MGD +VE+TEEM D AN  K+ A++++++G+L+ AI   T+AI LNP  
Sbjct:    88 VIEPDTDAPQEMGDENVEITEEMMDQANDKKVAAIEVLNDGELQKAIDLFTDAIKLNPRL 147

Query:    85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHV 144
             AILYA RA V+VKL KPNAAI+D   A+E NPDSA+ YK RG A   LG WEEAA+DL  
Sbjct:   148 AILYAKRASVFVKLQKPNAAIQDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAF 207

Query:   145 ASKLDYDEEIGMALKKVEPNARRI 168
             A KLDYDE+    LK+V+P A++I
Sbjct:   208 ACKLDYDEDASAMLKEVQPRAQKI 231

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1917606 St13 "suppression of tumorigenicity 13" [Mus musculus (taxid:10090)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 82/147 (55%), Positives = 105/147 (71%)

Query:    22 NTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLN 81
             N  V+EPD D  Q+MGD + E+TEEM D AN  K  A++ +++G+L+ AI   T+AI LN
Sbjct:    84 NEGVIEPDTDAPQEMGDENAEITEEMMDEANEKKGAAIEALNDGELQKAIDLFTDAIKLN 143

Query:    82 PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAAND 141
             P  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG WEEAA+D
Sbjct:   144 PRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHD 203

Query:   142 LHVASKLDYDEEIGMALKKVEPNARRI 168
             L +A KLDYDE+    L++V+P A++I
Sbjct:   204 LALACKLDYDEDASAMLREVQPRAQKI 230

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006457 "protein folding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0032564 "dATP binding" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0051082 "unfolded protein binding" evidence=ISO

GO:0051087 "chaperone binding" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0061084 "negative regulation of protein refolding" evidence=ISO

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=ISO

UNIPROTKB|Q8IZP2 ST13P4 "Putative protein FAM10A4" [Homo sapiens (taxid:9606)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 80/144 (55%), Positives = 104/144 (72%)

Query:    25 VMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS 84
             V+EPD D  Q+MGD + E+TEE+ D AN  K+ A++ +++G+L+ AI   T+AI LNP  
Sbjct:    84 VIEPDTDAPQEMGDENAEITEEVMDQANDKKVAAIEALNDGELQKAIDLFTDAIKLNPRL 143

Query:    85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHV 144
             AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG WEEAA+DL +
Sbjct:   144 AILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKRRGKAHRLLGHWEEAAHDLAL 203

Query:   145 ASKLDYDEEIGMALKKVEPNARRI 168
             A K DYDE+    LK+V+P A++I
Sbjct:   204 ACKFDYDEDASAMLKEVQPRAQKI 227

GO:0005737 "cytoplasm" evidence=IEA

RGD|621312 St13 "suppression of tumorigenicity 13" [Rattus norvegicus (taxid:10116)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 81/147 (55%), Positives = 102/147 (69%)

Query:    22 NTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLN 81
             N  V+E D D  Q+MGD + E+TE M D AN  K  A+D +++G+L+ AI   T+AI LN
Sbjct:    84 NEGVIEADTDAPQEMGDENAEITEAMMDEANEKKGAAIDALNDGELQKAIDLFTDAIKLN 143

Query:    82 PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAAND 141
             P  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG WEEAA D
Sbjct:   144 PRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAARD 203

Query:   142 LHVASKLDYDEEIGMALKKVEPNARRI 168
             L +A KLDYDE+    L++V+P A++I
Sbjct:   204 LALACKLDYDEDASAMLREVQPRAQKI 230

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IDA;IPI

GO:0030544 "Hsp70 protein binding" evidence=IDA;IPI

GO:0032403 "protein complex binding" evidence=IDA

GO:0032564 "dATP binding" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IDA

GO:0051087 "chaperone binding" evidence=IPI

GO:0051260 "protein homooligomerization" evidence=IDA

GO:0061084 "negative regulation of protein refolding" evidence=IDA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IDA

FB|FBgn0260484 HIP "Hsc/Hsp70-interacting protein" [Drosophila melanogaster (taxid:7227)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 69/145 (47%), Positives = 95/145 (65%)

Query:    25 VMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS 84
             V+E D+DP+Q MG+ S + TEE  + A+  + +A     + K ++AI   T+AI L+P +
Sbjct:   100 VIEADSDPAQPMGNYSKKATEEEVEQASELRAQAASAYGQQKFDEAIALYTKAIELSPGN 159

Query:    85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHV 144
             A+ +A R   ++KL KPNA IRD  VALE N D A GYK RG AR  LG +E AA+DL  
Sbjct:   160 ALFHAKRGQAFLKLKKPNACIRDCDVALELNSDLAAGYKFRGRARRLLGDFELAAHDLRQ 219

Query:   145 ASKLDYDEEIGMALKKVEPNARRIQ 169
             A KLD+DEE    LK+V PNA++I+
Sbjct:   220 ACKLDFDEETDEWLKEVTPNAKKIE 244

GO:0005829 "cytosol" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=ISS

GO:0043234 "protein complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6ES52	TDX_ORYSJ	No assigned EC number	0.66	0.8766	0.6277	yes	no
Q8IZP2	ST134_HUMAN	No assigned EC number	0.5628	0.7356	0.6958	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-14
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-08
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	6e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-05
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	1e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 65.9 bits (161), Expect = 3e-14
 Identities = 32/97 (32%), Positives = 48/97 (49%)

Query: 55  KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114
                     G  ++A+    +A+ L+P +A  Y   A  Y KL K   A+ D   ALE 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 115 NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151
           +PD+AK Y   G+A  +LG++EEA      A +LD +
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 32/103 (31%), Positives = 50/103 (48%)

Query: 50  AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAY 109
            A   + KA +   +     A+   T+AI L+P +A LYA RA   +KL     A+ DA 
Sbjct: 1   MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADAN 60

Query: 110 VALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152
            A+E +P  AK Y  +G A  +L +++ A   L   + L   +
Sbjct: 61  KAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD 103

Length = 356

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 49  DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK-PNAAIRD 107
           D A   K     L   G  ++AI    +A+ L+P +A  Y   A  Y+KL K    A+ D
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 108 AYVALETNP 116
              ALE +P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 46.1 bits (109), Expect = 6e-06
 Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 10/160 (6%)

Query: 2   KSNLSTEDDDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDL 61
           +        +D  E D E  N  +      P  K  +   E       A ++ KL   + 
Sbjct: 272 RPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA 331

Query: 62  IS----------EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVA 111
           I+          +GK  +A+  L+++I L+P     Y  RA + ++L  P+ A  D   A
Sbjct: 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391

Query: 112 LETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151
           L+ N +    Y  R       G++ +A  D   +  LD D
Sbjct: 392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 39.2 bits (92), Expect = 9e-05
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 84  SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG-QWEEAANDL 142
           +A           KL   + AI     ALE +PD+A+ Y    +A  +LG  +EEA  DL
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 143 HVASKLD 149
             A +LD
Sbjct: 62  EKALELD 68

Length = 69

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 12/133 (9%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
           L+   K ++AI +L +A+ L+P S +L    A   +K  KP  AIR     L  +P+   
Sbjct: 350 LLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409

Query: 121 GYKIRGMARARLGQWEEA----ANDLHVASKLDYDEEIGM-ALKKVEPN----AR---RI 168
           G+ +   A A LG   EA    A    +A +L+      M A ++V+      AR   RI
Sbjct: 410 GWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARI 469

Query: 169 QEHRRKYERLRKE 181
            + R++ E  +  
Sbjct: 470 DQLRQQNEEFKPY 482

Length = 484

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 4/123 (3%)

Query: 41  VEVTEEMRDA-ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN 99
             ++EE R   A   K K            AI   ++AI   P   + Y+ RA  +  L 
Sbjct: 116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALG 174

Query: 100 KPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD--YDEEIGMA 157
                + D   ALE +PD +K    R  A   LG++ +A  DL  +  +D   +E+   A
Sbjct: 175 DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234

Query: 158 LKK 160
           +++
Sbjct: 235 VER 237

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 25/97 (25%), Positives = 45/97 (46%)

Query: 55  KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114
           +L A   +  G++++AI  L+ A+ L+P      +     Y+ L     A      A E 
Sbjct: 333 RLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL 392

Query: 115 NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151
           +P++A      G+++   G   EA  DL  A++LD +
Sbjct: 393 DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
KOG0553	304	consensus TPR repeat-containing protein [General f	99.83
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.8
PRK15359	144	type III secretion system chaperone protein SscB;	99.74
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.7
PRK11189	296	lipoprotein NlpI; Provisional	99.68
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.66
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.65
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.65
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.64
KOG1126	638	consensus DNA-binding cell division cycle control	99.63
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.63
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.62
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.62
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.6
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.6
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.6
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.57
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.56
PRK15359	144	type III secretion system chaperone protein SscB;	99.56
PRK12370	553	invasion protein regulator; Provisional	99.55
KOG4234	271	consensus TPR repeat-containing protein [General f	99.54
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.53
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.53
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.53
PRK12370	553	invasion protein regulator; Provisional	99.53
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.52
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.51
KOG1126	638	consensus DNA-binding cell division cycle control	99.51
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.5
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.49
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.49
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.48
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.48
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.48
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.47
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.47
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.47
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.46
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.44
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.44
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.44
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.43
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.42
PRK11189	296	lipoprotein NlpI; Provisional	99.41
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.4
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.4
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.39
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.39
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.38
KOG1125	579	consensus TPR repeat-containing protein [General f	99.38
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.38
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.37
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.37
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.37
KOG2076	895	consensus RNA polymerase III transcription factor	99.37
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.36
PLN02789	320	farnesyltranstransferase	99.36
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.36
PRK15331	165	chaperone protein SicA; Provisional	99.35
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.35
KOG1125	579	consensus TPR repeat-containing protein [General f	99.34
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.34
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.34
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.33
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.33
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.31
PRK10803	263	tol-pal system protein YbgF; Provisional	99.31
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.31
PLN02789	320	farnesyltranstransferase	99.3
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.29
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.27
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.25
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.21
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.21
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.2
KOG0553	304	consensus TPR repeat-containing protein [General f	99.19
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.18
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.18
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.16
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.16
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.15
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.14
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.14
PF13512	142	TPR_18: Tetratricopeptide repeat	99.14
PRK14574	822	hmsH outer membrane protein; Provisional	99.14
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.13
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.13
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.13
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.12
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.12
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.12
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.12
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.11
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.11
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.11
PF13371	73	TPR_9: Tetratricopeptide repeat	99.11
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.1
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.1
KOG2003	840	consensus TPR repeat-containing protein [General f	99.09
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.08
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.07
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.06
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.06
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.05
KOG4555	175	consensus TPR repeat-containing protein [Function	99.04
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.04
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.03
PF12688	120	TPR_5: Tetratrico peptide repeat	99.01
KOG1129	478	consensus TPR repeat-containing protein [General f	99.0
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.99
KOG2076	895	consensus RNA polymerase III transcription factor	98.99
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.98
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.98
PRK14574	822	hmsH outer membrane protein; Provisional	98.98
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.98
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.98
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.97
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.97
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.96
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.96
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.93
PF13371	73	TPR_9: Tetratricopeptide repeat	98.92
PRK11906	458	transcriptional regulator; Provisional	98.92
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.91
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.91
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.91
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.88
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.88
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.87
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.86
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.86
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.85
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.85
PRK10803	263	tol-pal system protein YbgF; Provisional	98.85
KOG2003	840	consensus TPR repeat-containing protein [General f	98.83
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.82
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.81
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.81
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.79
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.78
KOG1129	478	consensus TPR repeat-containing protein [General f	98.78
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.78
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.76
PRK11906	458	transcriptional regulator; Provisional	98.75
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.74
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.74
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.72
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.71
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.69
PRK15331	165	chaperone protein SicA; Provisional	98.69
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.68
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.67
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.66
PF12688	120	TPR_5: Tetratrico peptide repeat	98.64
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.63
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.62
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.6
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.58
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.57
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.53
KOG4234	271	consensus TPR repeat-containing protein [General f	98.44
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.44
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.44
PF13428	44	TPR_14: Tetratricopeptide repeat	98.42
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.4
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.35
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.34
PF13431	34	TPR_17: Tetratricopeptide repeat	98.31
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.3
PF13431	34	TPR_17: Tetratricopeptide repeat	98.29
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.29
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.27
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.27
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.25
PF13428	44	TPR_14: Tetratricopeptide repeat	98.25
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.24
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.18
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.16
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.15
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.14
KOG1310	758	consensus WD40 repeat protein [General function pr	98.14
PF13512	142	TPR_18: Tetratricopeptide repeat	98.14
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.1
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.08
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.07
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.06
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.05
PLN03218	1060	maturation of RBCL 1; Provisional	98.05
KOG4555	175	consensus TPR repeat-containing protein [Function	98.04
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.03
PLN03218	1060	maturation of RBCL 1; Provisional	98.02
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.01
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.01
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.0
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.95
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.88
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.86
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.86
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.84
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.83
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.83
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.8
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.73
PLN03077	857	Protein ECB2; Provisional	97.72
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.72
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.69
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.67
PLN03077	857	Protein ECB2; Provisional	97.67
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.65
PRK10941	269	hypothetical protein; Provisional	97.64
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.63
KOG2471	696	consensus TPR repeat-containing protein [General f	97.62
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.61
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.6
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.6
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.6
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.6
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.6
PRK10941	269	hypothetical protein; Provisional	97.56
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.55
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.54
PRK04841	903	transcriptional regulator MalT; Provisional	97.49
PRK04841	903	transcriptional regulator MalT; Provisional	97.48
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.48
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.4
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.39
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.37
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.36
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.34
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.34
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.29
KOG1586	288	consensus Protein required for fusion of vesicles	97.27
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.22
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.2
KOG2471	696	consensus TPR repeat-containing protein [General f	97.19
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.18
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.18
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.18
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.14
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.14
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.14
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.12
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.12
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.11
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.09
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.07
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.07
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.05
KOG1586	288	consensus Protein required for fusion of vesicles	97.03
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.01
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.01
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.01
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.0
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.99
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.85
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.84
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.83
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.8
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.74
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.73
KOG1585	308	consensus Protein required for fusion of vesicles	96.64
KOG1585	308	consensus Protein required for fusion of vesicles	96.63
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.57
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.56
KOG3364	149	consensus Membrane protein involved in organellar	96.54
COG2912	269	Uncharacterized conserved protein [Function unknow	96.51
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.41
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.33
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.33
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.22
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.18
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.16
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.09
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.09
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.02
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.92
KOG3364	149	consensus Membrane protein involved in organellar	95.89
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.89
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.88
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.8
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.69
COG2912	269	Uncharacterized conserved protein [Function unknow	95.68
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.58
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.42
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.41
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.32
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.16
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.12
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.07
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.0
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.96
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.96
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.92
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	94.82
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.81
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.58
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.43
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.42
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.41
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.41
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.35
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.35
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.17
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.03
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.02
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	93.98
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.97
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.83
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.8
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.75
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.68
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.56
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.5
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.48
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.38
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	93.27
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.23
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.03
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.02
KOG1258	577	consensus mRNA processing protein [RNA processing	92.84
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.78
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	92.71
COG3947	361	Response regulator containing CheY-like receiver a	92.55
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.41
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	91.92
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.81
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.69
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	91.54
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	91.47
KOG1310	758	consensus WD40 repeat protein [General function pr	91.05
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	91.01
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	90.56
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.47
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	90.16
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	90.0
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	89.87
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.86
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.79
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	89.37
COG3947	361	Response regulator containing CheY-like receiver a	89.33
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.19
KOG2300	629	consensus Uncharacterized conserved protein [Funct	89.17
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	89.07
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	89.06
KOG2041	1189	consensus WD40 repeat protein [General function pr	88.61
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	88.55
KOG1258	577	consensus mRNA processing protein [RNA processing	88.47
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	88.34
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	88.33
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	88.22
KOG2581	493	consensus 26S proteasome regulatory complex, subun	87.57
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.54
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	87.48
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	87.06
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	86.75
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	86.51
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.15
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	85.86
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	85.77
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.45
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	85.35
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	85.29
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	84.04
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	83.94
PHA02537	230	M terminase endonuclease subunit; Provisional	83.06
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	82.63
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	82.59
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	82.41
PF04212	69	MIT: MIT (microtubule interacting and transport) d	82.39
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	82.16
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	80.51
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	80.31

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=9.1e-20  Score=145.03  Aligned_cols=122  Identities=34%  Similarity=0.450  Sum_probs=112.6

Q ss_pred             HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      +....++.+...|+.+++.++|++|+..|.+||.++|+++.+|++++.+|.++|+++.|+++|+.+|.+||.++++|.++
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHhhhh
Q 041967          126 GMARARLGQWEEAANDLHVASKLDYDEEIGM-ALKKVEPNARR  167 (227)
Q Consensus       126 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~-~l~~~~~~~~~  167 (227)
                      |.+|..+|++..|+..|++++.++|+|++++ .|......+++
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999996544 66555544444

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=2.2e-18  Score=145.94  Aligned_cols=151  Identities=25%  Similarity=0.341  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ..+...+..|+.+|+.|+|..|+..|+++|..+|+++.+|.|+|.||.+++++..|+.+++.+++++|++.++|++.|.+
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~a  435 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAA  435 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            34677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHhhhh
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELKNFERERQRKQAGADREALSGLR  207 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  207 (227)
                      +..+.+|+.|+..|+++++.+|.+ +....+.++....                 .. ....++..++.+.||++..+|+
T Consensus       436 l~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~-----------------~~-~~~~ee~~~r~~~dpev~~il~  497 (539)
T KOG0548|consen  436 LRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ-----------------RG-DETPEETKRRAMADPEVQAILQ  497 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh-----------------hc-CCCHHHHHHhhccCHHHHHHHc
Confidence            999999999999999999999987 4444444443322                 11 1111455666899999999999


Q ss_pred             hhhhhhhhhh
Q 041967          208 DGMASDFFSL  217 (227)
Q Consensus       208 ~~~~~~~~~~  217 (227)
                      ||.++.|+..
T Consensus       498 d~~m~~~l~q  507 (539)
T KOG0548|consen  498 DPAMRQILEQ  507 (539)
T ss_pred             CHHHHHHHHH
Confidence            9999966654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.74  E-value=1.9e-16  Score=117.17  Aligned_cols=114  Identities=18%  Similarity=0.122  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR  131 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  131 (227)
                      ..++..|..++..|++++|+.+|.+++..+|.++.+++++|.++...|++++|+..|++++.++|.++.+++++|.++..
T Consensus        25 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         25 ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            34778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967          132 LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA  165 (227)
Q Consensus       132 ~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~  165 (227)
                      +|++++|+..|.+++.+.|++ ..+...+.+....
T Consensus       105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            999999999999999999998 5565655555433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.70  E-value=2.5e-17  Score=133.04  Aligned_cols=175  Identities=57%  Similarity=0.863  Sum_probs=165.0

Q ss_pred             chhhhhhhhccCCCCCCCCCCCCCcCCCCCCccccHHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 041967           10 DDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYA   89 (227)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   89 (227)
                      ++++.+|++++...+++++++++++.+++....++++.-+.+......+...+..|.++.|++.|..+|.++|..+..+.
T Consensus        73 e~s~~~~~~~~d~egviepd~d~pq~MGds~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~  152 (377)
T KOG1308|consen   73 EVSSPESDLEIDGEGVIEPDTDAPQEMGDSNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYA  152 (377)
T ss_pred             CCCCCCcchhccCCCccccCCCcchhhchhhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcc
Confidence            34457788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHH
Q 041967           90 ARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQ  169 (227)
Q Consensus        90 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~  169 (227)
                      .++.++++++....|+.+|..++.++|+....|-..|.+...+|.+..|...+..+.+++-+......+.++..+.+.++
T Consensus       153 kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~  232 (377)
T KOG1308|consen  153 KRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIE  232 (377)
T ss_pred             cccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999988888889999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 041967          170 EHRRKYERLRKEREL  184 (227)
Q Consensus       170 ~a~~~~~~~~~~~~~  184 (227)
                      +....+++.....+.
T Consensus       233 e~~~k~er~~~e~~~  247 (377)
T KOG1308|consen  233 EHRRKYERAREEREI  247 (377)
T ss_pred             hchhHHHHHHHHhcc
Confidence            999999887766655

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.68  E-value=6.5e-15  Score=121.62  Aligned_cols=131  Identities=19%  Similarity=0.134  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ..+..++.+|..+...|++.+|+..|++++.++|+++.+|+++|.++...|++++|+..|+++++++|++..+|+++|.+
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  141 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA  141 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      +...|++++|+..|.++++++|++........+....++..+|...+.+..
T Consensus       142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            999999999999999999999998532222223345567888888885543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.66  E-value=8.4e-16  Score=132.53  Aligned_cols=136  Identities=19%  Similarity=0.139  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ..++++.++|+.+...|.++.|+.+|.++++..|..+.+..|+|.+|.++|++++|+.+|+.+|++.|....++.++|.+
T Consensus       352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt  431 (966)
T KOG4626|consen  352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNT  431 (966)
T ss_pred             ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence            45677777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      |..+|+...|+++|.+|+.++|.. ++..+|+.++...|++.+|...|+.+.+.++.
T Consensus       432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD  488 (966)
T KOG4626|consen  432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD  488 (966)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence            888888888888888888888877 66778888888888888888888777766653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.65  E-value=7e-15  Score=124.26  Aligned_cols=114  Identities=28%  Similarity=0.369  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR  131 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  131 (227)
                      ..+...|..++..|+|.+|+.+|.++|.++|+++.+|+++|.+++.+|+++.|+.++++++.++|.++.+|+++|.++..
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            34778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967          132 LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA  165 (227)
Q Consensus       132 ~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~  165 (227)
                      +|++++|+..|++++.++|++ .....+..+...+
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999998 5555555554433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.65  E-value=1e-14  Score=107.28  Aligned_cols=103  Identities=11%  Similarity=-0.062  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      ++..+.++..|..++..|++++|+..|+....++|.++..|+++|.|+..+|++.+|+..|.+++.++|+++..+++.|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCC
Q 041967          128 ARARLGQWEEAANDLHVASKLDY  150 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p  150 (227)
                      |+...|+.+.|.+.|+.++...-
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999998873

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.64  E-value=1.5e-14  Score=130.72  Aligned_cols=135  Identities=23%  Similarity=0.265  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ..+..+..+|..++..|++++|+..|++++.++|.+..+|+.+|.++...|++++|+..|++++.++|+++.+|+.+|.+
T Consensus       329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~  408 (615)
T TIGR00990       329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL  408 (615)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45567888888888889999999999999988888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      +...|++++|+.+|++++.++|++ ..+..++.++...|++.+|...+++..+..+
T Consensus       409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P  464 (615)
T TIGR00990       409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP  464 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            888888888888888888888887 6677888888888888888888877766544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=8.4e-16  Score=133.16  Aligned_cols=149  Identities=13%  Similarity=0.114  Sum_probs=136.0

Q ss_pred             CCCCCCccccHHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967           35 KMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET  114 (227)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  114 (227)
                      +++...+.+++..++.++.|...|+++..+++++.|+++|++|+.++|..+.+|..+|.=+.....+++|..+|+.||..
T Consensus       405 ~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~  484 (638)
T KOG1126|consen  405 ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV  484 (638)
T ss_pred             HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence            44555667777778889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          115 NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       115 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      +|.+-.+||-+|.+|.++++++.|.-+|++|+.++|.+ .+...++.++.+.|..++|...++++...++
T Consensus       485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~  554 (638)
T KOG1126|consen  485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP  554 (638)
T ss_pred             CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999 4466899999999999999999988875544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.63  E-value=1.5e-14  Score=130.72  Aligned_cols=135  Identities=13%  Similarity=0.105  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      .....++.+|..++..|++++|+..|.+++..+|+++.+++.+|.+++..|++++|+.+|++++.++|++..+++.+|.+
T Consensus       363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~  442 (615)
T TIGR00990       363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT  442 (615)
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      +..+|++++|+..|.+++..+|.+ .++..++.++...|++.+|...|++.....+
T Consensus       443 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p  498 (615)
T TIGR00990       443 QYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK  498 (615)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            999999999999999999999998 7788999999999999999999988776543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.62  E-value=3.4e-14  Score=103.58  Aligned_cols=106  Identities=18%  Similarity=0.207  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      +......+..|..++..|++++|+..|++++..+|.++.+++++|.+++..|++.+|+..+++++..+|+++..++.+|.
T Consensus        14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~   93 (135)
T TIGR02552        14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAE   93 (135)
T ss_pred             hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCChH
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDEE  153 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~~  153 (227)
                      ++...|+++.|+..|+++++++|++.
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        94 CLLALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999873

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=1.6e-14  Score=120.97  Aligned_cols=153  Identities=18%  Similarity=0.155  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .++...-+|+.|...++.++|+.+|++|+++||....+|..+|.=|+.+++...|+..|++|+.++|.+-++||.+|++|
T Consensus       329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY  408 (559)
T KOG1155|consen  329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY  408 (559)
T ss_pred             CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence            34566678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH---HHHHHHHHHhhhcHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELKN---FERERQRKQAGADREA  202 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  202 (227)
                      ..++.+.=|+-+|++|+.+.|.| .+|..||.++.++++..+|.++|++...-.....   ....+..++...+.++
T Consensus       409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA  485 (559)
T KOG1155|consen  409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA  485 (559)
T ss_pred             HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999 8899999999999999999999988775433211   1115555555554443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.60  E-value=2.6e-14  Score=123.45  Aligned_cols=134  Identities=18%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+.++-++|.+|+.+|+.+-||.+|+++|++.|+.+.+|.|+|.++-..|+..+|..+|.+++.++|+++.+.+++|.++
T Consensus       285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~  364 (966)
T KOG4626|consen  285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY  364 (966)
T ss_pred             chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      .++|.++.|...|.+++.++|.. ....+|+.++.+.|++.+|...|+...+.++
T Consensus       365 ~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P  419 (966)
T KOG4626|consen  365 REQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP  419 (966)
T ss_pred             HHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence            55555555555555555555554 3334555555555555555555544444433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.60  E-value=1.2e-13  Score=106.61  Aligned_cols=137  Identities=19%  Similarity=0.130  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ..+.+...+|.-|+..|++..|...+++||+.+|++..+|..++..|...|+.+.|.+.|++|+.++|++.+++.+.|--
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F  112 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCC---h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Q 041967          129 RARLGQWEEAANDLHVASKLDYD---E-EIGMALKKVEPNARRIQEHRRKYERLRKERELKN  186 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~---~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  186 (227)
                      ++.+|++++|..+|++|+.. |.   . .++.+++.|..+.|+...+...+++....++...
T Consensus       113 LC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063         113 LCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence            99999999999999999875 33   3 6788999999999999999999999888777543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=7.1e-14  Score=115.80  Aligned_cols=133  Identities=26%  Similarity=0.312  Sum_probs=115.5

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---------------AILYAARAGVYVKLNKPNAAIRDAYVA  111 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~g~~~~~~~~~~~A~~~~~~a  111 (227)
                      ....+......|+.+|+.|+|..|...|.+++..=..+               ..++.|++.|+.+++.|..|+..|+++
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            44677889999999999999999999999998753321               358899999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHH-HHHHHH
Q 041967          112 LETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRR-KYERLR  179 (227)
Q Consensus       112 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~-~~~~~~  179 (227)
                      |.++|.|.+++|+.|.++..+|+|+.|+..|+++++++|.| .+...+..+..+..+..+..+ .|..+.
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999 777788888777777665533 344444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.57  E-value=1.1e-13  Score=107.73  Aligned_cols=104  Identities=14%  Similarity=0.097  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--cHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVY-VKLNK--PNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      +.++.|+.+|..+...|++++|+..|.+++.++|+++.++.++|.++ ...|+  +.+|+..++++++.+|+++.+++.+
T Consensus        71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~L  150 (198)
T PRK10370         71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLL  150 (198)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHH
Confidence            34556666666666666666666666666666666666666666653 44454  3666666666666666666666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          126 GMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       126 a~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      |.+++..|++++|+.+|++++++.|.+
T Consensus       151 A~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        151 ASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            666666666666666666666666554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.56  E-value=1.9e-13  Score=106.32  Aligned_cols=121  Identities=17%  Similarity=0.124  Sum_probs=113.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 041967           64 EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR-ARLGQ--WEEAAN  140 (227)
Q Consensus        64 ~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~  140 (227)
                      .++.++++..+.+++..+|+++..|+.+|.+|...|+++.|+..|++++.++|+++.++..+|.++ ...|+  +.+|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            567799999999999999999999999999999999999999999999999999999999999985 77787  599999


Q ss_pred             HHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          141 DLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       141 ~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .+.++++.+|++ .++..++......|++.+|...|+++.+..+.
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            999999999999 78889999999999999999999999877665

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.56  E-value=1.4e-13  Score=101.81  Aligned_cols=111  Identities=14%  Similarity=-0.028  Sum_probs=104.0

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 041967           71 IGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDY  150 (227)
Q Consensus        71 ~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  150 (227)
                      ..+|++++..+|++   ++.+|.++...|++++|+..|++++.++|.+..+|+.+|.++..+|++++|+..|.+++.++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46789999999874   667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ch-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          151 DE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       151 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ++ ..+..++.++...|++.+|...|.+..+..+.
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~  124 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA  124 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99 88889999999999999999999999877665

>PRK12370 invasion protein regulator; Provisional

Probab=99.55  E-value=2.1e-13  Score=121.74  Aligned_cols=135  Identities=10%  Similarity=-0.058  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      +.+.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.++.+
T Consensus       336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~  415 (553)
T PRK12370        336 NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI  415 (553)
T ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            45677888899999999999999999999999999999999999999999999999999999999999988877777777


Q ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLD-YDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      +...|++++|+..+++++... |++ ..+..++.++...|+.++|...+.+.....+
T Consensus       416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~  472 (553)
T PRK12370        416 TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI  472 (553)
T ss_pred             HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence            888899999999999988875 555 4466788888889999999998877655433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.54  E-value=4.5e-13  Score=101.39  Aligned_cols=104  Identities=31%  Similarity=0.423  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYK  123 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  123 (227)
                      ..+..+...|+.+|.+|+|.+|...|..||.+.|..     ..+|.|+|.|..+++.++.|+..|.++|.++|.+.+++.
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~  172 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE  172 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence            346788999999999999999999999999999986     458999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          124 IRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ++|.+|..+..|++|+..|.+.+..+|..
T Consensus       173 RRAeayek~ek~eealeDyKki~E~dPs~  201 (271)
T KOG4234|consen  173 RRAEAYEKMEKYEEALEDYKKILESDPSR  201 (271)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence            99999999999999999999999999985

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=2.2e-13  Score=115.83  Aligned_cols=112  Identities=36%  Similarity=0.442  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      +..+...|+..|..|+|+.|+.+|..+|.++|.+...|.|+..+|...|+|.+|+++..+.+.++|+|+++|.++|..+.
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~   81 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF   81 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCChHH-HHHHHHHH
Q 041967          131 RLGQWEEAANDLHVASKLDYDEEI-GMALKKVE  162 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a~~~~p~~~~-~~~l~~~~  162 (227)
                      -+|+|++|+..|.+.++.+|+|.. ...+....
T Consensus        82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999954 34555554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.53  E-value=1.4e-12  Score=102.09  Aligned_cols=134  Identities=20%  Similarity=0.183  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++.+|..++..|++++|+..+.+++..+|.+..++..+|.++...|++++|+..+++++...|.+..+++.+|.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            46777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHhcCC--Ch-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDY--DE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p--~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ...|++++|...|.+++...+  .. ..+..++.++...|++.++...+.+.....+
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  166 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP  166 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            888888888888888877532  22 4455677777777888888777776665443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=5.8e-13  Score=111.71  Aligned_cols=134  Identities=19%  Similarity=0.169  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ....+|-..|-.++..++...|+..|..|++++|.+..+|+.+|.+|--++-+.=|+-+|++|+.+.|.++..|..+|.|
T Consensus       362 ~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~C  441 (559)
T KOG1155|consen  362 KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGEC  441 (559)
T ss_pred             chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      |..+++.++|+++|.+++.....+ .+...++.++.++++..+|...|.+.+..-
T Consensus       442 Y~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  442 YEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             HHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            999999999999999999999887 677799999999999999999998887643

>PRK12370 invasion protein regulator; Provisional

Probab=99.53  E-value=4.4e-13  Score=119.70  Aligned_cols=132  Identities=17%  Similarity=0.015  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH
Q 041967           50 AANMTKLKAVDLIS---------EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK  120 (227)
Q Consensus        50 ~~~~~~~~g~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  120 (227)
                      .+..+..+|.+++.         .+++.+|+..++++++++|+++.++..+|.++...|++++|+..|++++.++|+++.
T Consensus       294 ~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~  373 (553)
T PRK12370        294 SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD  373 (553)
T ss_pred             cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            45567777766553         345899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          121 GYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       121 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      +|+.+|.++...|++++|+..|+++++++|.+ .....+..+....|++++|...+++....
T Consensus       374 a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~  435 (553)
T PRK12370        374 IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ  435 (553)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998 44445555666788999999988777644

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.52  E-value=6.9e-13  Score=96.63  Aligned_cols=114  Identities=12%  Similarity=0.032  Sum_probs=107.8

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967           72 GQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD  151 (227)
Q Consensus        72 ~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  151 (227)
                      +.|++++..+|++..+.+.+|.+++..|++++|+..++.++..+|.++.+++.+|.++..+|++++|...|.+++.++|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 041967          152 E-EIGMALKKVEPNARRIQEHRRKYERLRKERELK  185 (227)
Q Consensus       152 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  185 (227)
                      + ..+..++.++...|++..|...+++..+..+..
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  118 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGEN  118 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            8 778899999999999999999999888877653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.51  E-value=1.8e-12  Score=101.58  Aligned_cols=133  Identities=20%  Similarity=0.235  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN--PDSAKGYKIRG  126 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la  126 (227)
                      .....+..+|..++..|++++|+..|.+++...|.+..+++++|.++...|++++|+..+++++...  |.....++.+|
T Consensus        63 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  142 (234)
T TIGR02521        63 DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAG  142 (234)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999999999999864  45677899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      .++...|+++.|...|.+++..+|.+ ..+..++.++...|++.++...+++....
T Consensus       143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       143 LCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999998 67789999999999999999999887765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=2.4e-13  Score=118.14  Aligned_cols=134  Identities=16%  Similarity=0.117  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      +...+||.+|.+|+++++++.|.-.|++|+.++|.+......+|..+.+.|+.++|+..+++|+.++|.++-..|..|.+
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i  566 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI  566 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence            56788899999999999999999999999999998888888889999999999999999999999999999888999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      ++.++++++|+..++++..+-|++ .+...++.++.+.|+...|...|--+...+
T Consensus       567 l~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  567 LFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             HHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            999999999999999999999988 667788899888888888888875554433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.50  E-value=1.7e-12  Score=121.62  Aligned_cols=129  Identities=22%  Similarity=0.196  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 041967           54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG  133 (227)
Q Consensus        54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  133 (227)
                      +..++......|++++|+..|.+++..+|+ +.++.++|.++.+.|++++|+..|++++.++|+++.++.++|.++...|
T Consensus       579 ~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G  657 (987)
T PRK09782        579 YWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG  657 (987)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            333444444556666666666666666664 6666666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          134 QWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       134 ~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ++++|+..|.++++++|++ ..+..++.++...|++.+|...++++....+
T Consensus       658 ~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        658 DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID  708 (987)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            6666666666666666666 5555666666666666666666666655544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.49  E-value=4.4e-12  Score=114.86  Aligned_cols=134  Identities=10%  Similarity=-0.000  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+++++.+|......|.+++|...+..++.++|++..++.+++.++.+.+++++|+..+++++..+|++..+++.+|.++
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l  164 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSW  164 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ..+|++++|+..|++++..+|++ ..+..++..+...|+.++|...|++......
T Consensus       165 ~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        165 DEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            99999999999999999999987 7888999999999999999999988876644

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.49  E-value=2.5e-12  Score=120.47  Aligned_cols=133  Identities=13%  Similarity=0.001  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      +..+...|.++.+.|++++|+..|.+++.++|+++.++.++|.++...|++++|+..|+++++++|+++.+++++|.++.
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~  688 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      .+|++++|+.+|++++.++|++ .+....+.+.....++..+...+.+......
T Consensus       689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~  742 (987)
T PRK09782        689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF  742 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            8888888888888888888887 6666777777777777777776666554443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.48  E-value=2.5e-13  Score=110.36  Aligned_cols=114  Identities=26%  Similarity=0.299  Sum_probs=104.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967           45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI  124 (227)
Q Consensus        45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  124 (227)
                      +.-......+.+.|+.||++|.|++||.||.+++..+|+++-++.|++.+|++++.|..|..+|+.|+.++..+.++|.+
T Consensus        91 ~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSR  170 (536)
T KOG4648|consen   91 QQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSR  170 (536)
T ss_pred             HHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence            33345566689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHH
Q 041967          125 RGMARARLGQWEEAANDLHVASKLDYDE-EIGMAL  158 (227)
Q Consensus       125 la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l  158 (227)
                      +|.+...+|...+|.+.++.++.+.|.+ +....+
T Consensus       171 R~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~  205 (536)
T KOG4648|consen  171 RMQARESLGNNMEAKKDCETVLALEPKNIELKKSL  205 (536)
T ss_pred             HHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence            9999999999999999999999999997 443333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.7e-12  Score=109.50  Aligned_cols=120  Identities=31%  Similarity=0.351  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      ....+..+..+|+.+|++|.|++||.+|++||.++|+.+..|.|++.||...|++++.++++.++++++|++++++++++
T Consensus       111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA  190 (606)
T KOG0547|consen  111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRA  190 (606)
T ss_pred             HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCC-h-HHHHHHHHHHHhhh
Q 041967          127 MARARLGQWEEAANDLHVASKLDYD-E-EIGMALKKVEPNAR  166 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~-~-~~~~~l~~~~~~~~  166 (227)
                      .++..+|++.+|+....-..-++.- | .+...+.+++...+
T Consensus       191 ~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a  232 (606)
T KOG0547|consen  191 SAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA  232 (606)
T ss_pred             HHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH
Confidence            9999999999999877643333221 2 33445555554443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.48  E-value=1.9e-12  Score=99.93  Aligned_cols=134  Identities=17%  Similarity=0.162  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--CCCCHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET--NPDSAKGYKIR  125 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l  125 (227)
                      ++...+|..++..|...|+.+.|-+.|.+|+.++|++.+++.|.|..++.+|.|++|.+.|++|+..  .|..+..|-++
T Consensus        66 Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~  145 (250)
T COG3063          66 PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENL  145 (250)
T ss_pred             cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhh
Confidence            4567899999999999999999999999999999999999999999999999999999999999965  34557899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          126 GMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       126 a~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      |.|..+.|+++.|..+|++++.++|++ .....+.......|++..|+..+++....
T Consensus       146 G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~  202 (250)
T COG3063         146 GLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQR  202 (250)
T ss_pred             HHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence            999999999999999999999999998 77889999999999999999988776543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.47  E-value=2.7e-12  Score=102.33  Aligned_cols=134  Identities=15%  Similarity=0.090  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH---HHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA---ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK---GYK  123 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  123 (227)
                      .+..++..|..++..|+|++|+..|++++..+|+++   .+++.+|.+++..|++++|+..|+++++.+|+++.   +++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            578999999999999999999999999999999876   57899999999999999999999999999998876   799


Q ss_pred             HHHHHHHHc--------CCHHHHHHHHHHHHhcCCCh-HHHH-----------------HHHHHHHhhhhHHHHHHHHHH
Q 041967          124 IRGMARARL--------GQWEEAANDLHVASKLDYDE-EIGM-----------------ALKKVEPNARRIQEHRRKYER  177 (227)
Q Consensus       124 ~la~~~~~~--------g~~~~A~~~~~~a~~~~p~~-~~~~-----------------~l~~~~~~~~~~~~a~~~~~~  177 (227)
                      .+|.++...        |+++.|+..|++++..+|++ ..+.                 .++.++...|++.+|...+..
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~  191 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET  191 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            999999987        88999999999999999997 3321                 345556667888888888877


Q ss_pred             HHHHHH
Q 041967          178 LRKERE  183 (227)
Q Consensus       178 ~~~~~~  183 (227)
                      +....+
T Consensus       192 al~~~p  197 (235)
T TIGR03302       192 VVENYP  197 (235)
T ss_pred             HHHHCC
Confidence            766544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.47  E-value=3.5e-12  Score=90.39  Aligned_cols=104  Identities=19%  Similarity=0.136  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKI  124 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  124 (227)
                      ++.++..|..++..|++++|+..|.+++..+|++   +.+++.+|.+++..|+++.|+..|+.++..+|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999999876   5789999999999999999999999999999886   578999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967          125 RGMARARLGQWEEAANDLHVASKLDYDEEI  154 (227)
Q Consensus       125 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~  154 (227)
                      +|.++..+|++++|...|.+++...|++..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            999999999999999999999999998743

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.47  E-value=4e-12  Score=115.57  Aligned_cols=131  Identities=15%  Similarity=0.158  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHCCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLED----AIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      +..++.+|..++..|++++    |+..|++++..+|+++.++.++|.++...|++++|+..+++++.++|+++.++..+|
T Consensus       246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La  325 (656)
T PRK15174        246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA  325 (656)
T ss_pred             HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3445555555555555553    555566666666655555556666666666666666666666666666655555566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      .++...|++++|+..|.+++..+|.+ .....++.++...|+..+|...|+++.+.
T Consensus       326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            66666666666666666665555555 22223444555555555555555555444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=2.2e-12  Score=108.87  Aligned_cols=137  Identities=26%  Similarity=0.277  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      ...++++...|..+|-.|++-.|...|+++|.++|.....|..+|..|....+.++...+|..|..++|.++.+|+-+|+
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ  402 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ  402 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      +++-+++|++|+..|++++.++|.+ -..-.++-...+.+.+.+....|+...+..+.
T Consensus       403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~  460 (606)
T KOG0547|consen  403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN  460 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999998 44456666667777788888877777666554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.44  E-value=7.3e-13  Score=108.48  Aligned_cols=129  Identities=25%  Similarity=0.249  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLN--PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      .+......+...++++++...+.++....  +.++.+|..+|.++.+.|++++|+.+++++++++|+++.++..++.++.
T Consensus       112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li  191 (280)
T PF13429_consen  112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI  191 (280)
T ss_dssp             ------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            33334444444455555555544443322  3344444555555555555555555555555555555554444444444


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      ..|+++++...+.......|++ ..+..++.++..+|+..+|...+++..+.
T Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~  243 (280)
T PF13429_consen  192 DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL  243 (280)
T ss_dssp             TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred             HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc
Confidence            4454444444444444444333 33444444444445555555554444443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.44  E-value=5.2e-12  Score=99.25  Aligned_cols=126  Identities=20%  Similarity=0.152  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ....+...|...+..|+|..|+..+.++..+.|+++.+|..+|.+|.+.|+++.|...|.+++++.|..+.++.++|..|
T Consensus        99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~  178 (257)
T COG5010          99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL  178 (257)
T ss_pred             cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence            34566669999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKY  175 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~  175 (227)
                      .-.|++++|.+.+..+....+.+ .+..++..+....|++.+|....
T Consensus       179 ~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         179 LLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             HHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            99999999999999999998877 88889999999999999888766

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.44  E-value=7.3e-12  Score=113.88  Aligned_cols=130  Identities=19%  Similarity=0.151  Sum_probs=121.4

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH----HHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNA----AIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      ...|..++..|++++|+..|.+++..+|+++.+++++|.++...|++++    |+..|++++.++|++..++..+|.++.
T Consensus       216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~  295 (656)
T PRK15174        216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI  295 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            4557888999999999999999999999999999999999999999986    899999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ..|++++|+..|++++.++|++ .+...++.++...|++.+|...++++....+.
T Consensus       296 ~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~  350 (656)
T PRK15174        296 RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV  350 (656)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999998 67779999999999999999999888766554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.43  E-value=3.8e-12  Score=85.00  Aligned_cols=99  Identities=32%  Similarity=0.382  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL  132 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  132 (227)
                      .++..|..++..|++++|+..+.+++...|.+..+++.+|.++...+++++|+..|++++...|.+..+++.+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCC
Q 041967          133 GQWEEAANDLHVASKLDYD  151 (227)
Q Consensus       133 g~~~~A~~~~~~a~~~~p~  151 (227)
                      |+++.|...+.+++..+|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988873

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.42  E-value=1e-12  Score=84.63  Aligned_cols=66  Identities=30%  Similarity=0.325  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCC
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-KPNAAIRDAYVALETNP  116 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p  116 (227)
                      +..|+..|..++..|+|++|+.+|.+++.++|+++.+++++|.++..+| ++.+|+.+++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5667777777777777777777777777777777777777777777777 57777777777777766

...

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.41  E-value=8.4e-12  Score=103.11  Aligned_cols=120  Identities=18%  Similarity=0.126  Sum_probs=109.1

Q ss_pred             CCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 041967           65 GKLEDAIGQLTEAIMLNP---T-SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAAN  140 (227)
Q Consensus        65 ~~~~~A~~~~~~al~~~p---~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  140 (227)
                      +..+.++..+.++|...|   . .+.+|+++|.+|...|++..|+..|++++.++|+++.+|+.+|.++...|+++.|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            466788999999996443   3 367899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          141 DLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       141 ~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .|.++++++|++ .++..++.++...|++.+|...+++..+..+.
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~  164 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN  164 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            999999999998 77889999999999999999999888876554

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.40  E-value=1.8e-11  Score=97.52  Aligned_cols=132  Identities=15%  Similarity=0.039  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCcHHHHHHHHHHHHhCCCC
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI---LYAARAGVYVKL--------NKPNAAIRDAYVALETNPDS  118 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~p~~  118 (227)
                      ...+++.+|..++..|++++|+..|++++..+|+++.   +++.+|.+++..        |++++|+..|++++..+|++
T Consensus        69 ~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  148 (235)
T TIGR03302        69 AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS  148 (235)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence            3468899999999999999999999999999998765   799999999986        78999999999999999998


Q ss_pred             HHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhhhhHHHHHHHHHH
Q 041967          119 AKGY-----------------KIRGMARARLGQWEEAANDLHVASKLDYDE----EIGMALKKVEPNARRIQEHRRKYER  177 (227)
Q Consensus       119 ~~~~-----------------~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~  177 (227)
                      ..++                 +.+|.++...|++.+|+..|.+++...|+.    .++..++.++...|++.++...++.
T Consensus       149 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~  228 (235)
T TIGR03302       149 EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV  228 (235)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6542                 467889999999999999999999998863    4677999999999999999998877


Q ss_pred             HHHH
Q 041967          178 LRKE  181 (227)
Q Consensus       178 ~~~~  181 (227)
                      +.+.
T Consensus       229 l~~~  232 (235)
T TIGR03302       229 LGAN  232 (235)
T ss_pred             HHhh
Confidence            6543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.40  E-value=1.8e-11  Score=99.66  Aligned_cols=105  Identities=24%  Similarity=0.316  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      +...+.++.+|..++..|++..|+..|..|++.+|++..+++.+|.+|+.+|.-..|+.++.++|++.|++..+.+.+|.
T Consensus        35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~  114 (504)
T KOG0624|consen   35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV  114 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ++..+|+++.|...|.+++..+|.+
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~  139 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSN  139 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCc
Confidence            9999999999999999999999975

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.39  E-value=3.1e-11  Score=103.03  Aligned_cols=129  Identities=15%  Similarity=0.061  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc
Q 041967           54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-KGYKIRGMARARL  132 (227)
Q Consensus        54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~  132 (227)
                      +..+|..++..|++++|+..|.+++..+|++..+++.+|.++...|++++|+..+++++..+|.+. .++..++.+|...
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  262 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL  262 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence            444555555566666666666666665555555555566666666666666666666665555542 3445555566666


Q ss_pred             CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          133 GQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       133 g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      |++++|+..+++++...|+......++.++...|++.+|...+++..+..
T Consensus       263 g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~  312 (389)
T PRK11788        263 GDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRH  312 (389)
T ss_pred             CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            66666666666666655555444555555555566666666555554443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.39  E-value=2.6e-11  Score=92.33  Aligned_cols=104  Identities=17%  Similarity=0.225  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      ..+..++..|..+...|++++|+.+|.+++...|+.   +.++.++|.++...|++++|+..+.+++...|.+..++..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            467889999999999999999999999999887763   46899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCC--------------HHHHHHHHHHHHhcCCCh
Q 041967          126 GMARARLGQ--------------WEEAANDLHVASKLDYDE  152 (227)
Q Consensus       126 a~~~~~~g~--------------~~~A~~~~~~a~~~~p~~  152 (227)
                      |.++..+|+              +..|...+++++..+|++
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            999999998              567777777777777776

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.38  E-value=2.6e-12  Score=82.68  Aligned_cols=67  Identities=31%  Similarity=0.410  Sum_probs=65.0

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 041967           84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG-QWEEAANDLHVASKLDY  150 (227)
Q Consensus        84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p  150 (227)
                      ++..|..+|.+++..|++++|+..|++++.++|+++.+|+++|.++..+| ++.+|+.+|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57889999999999999999999999999999999999999999999999 79999999999999998

...

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.38  E-value=3e-12  Score=109.85  Aligned_cols=102  Identities=19%  Similarity=0.244  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .++.+..+|..|.-.|+|+.|+.+|+.||..+|++...|..+|..+....+..+||..|++|+.+.|.+.+++|++|.++
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~  508 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC  508 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC
Q 041967          130 ARLGQWEEAANDLHVASKLDYD  151 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~  151 (227)
                      ..+|.|++|+.+|..|+.+.+.
T Consensus       509 mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  509 MNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhhhhHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999775

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.38  E-value=1.8e-11  Score=113.50  Aligned_cols=135  Identities=21%  Similarity=0.224  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      ...+..+...|..++..|++++|+..|.+++..+|++..+++.+|.+++..|++++|+..+++++..+|.+..+++.+|.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  201 (899)
T TIGR02917       122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD  201 (899)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      ++...|+++.|...|++++..+|.+ ..+..++.+....|++.+|...+..+.+..
T Consensus       202 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  257 (899)
T TIGR02917       202 LLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA  257 (899)
T ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999988 667788888888899998888887776543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.37  E-value=2e-11  Score=113.23  Aligned_cols=132  Identities=17%  Similarity=0.097  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR  131 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  131 (227)
                      ..+...|..+...|++++|+..+.+++..+|++..+++.+|.++...|++++|+..|++++..+|+++.++..+|.++..
T Consensus       737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  816 (899)
T TIGR02917       737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE  816 (899)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            56677888888889999999999998888888888888899999888999999999999998889888888888888888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          132 LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       132 ~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .|+ .+|+..+++++.+.|++ ..+..++.++...|++.+|...++++.+..+.
T Consensus       817 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~  869 (899)
T TIGR02917       817 LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE  869 (899)
T ss_pred             cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            888 77899999998888888 66778888888888888888888888876554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.37  E-value=4.7e-11  Score=88.01  Aligned_cols=105  Identities=10%  Similarity=-0.032  Sum_probs=98.8

Q ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHH
Q 041967           78 IMLN-PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIG  155 (227)
Q Consensus        78 l~~~-p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~  155 (227)
                      ..+. ++.....|.+|..++..|+++.|...|+.++.++|.+...|++||.|+..+|++.+|+..|.++..++|++ ...
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~  106 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP  106 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence            4566 77788999999999999999999999999999999999999999999999999999999999999999999 778


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          156 MALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       156 ~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      .+++.++...|+...|+..|+......
T Consensus       107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        107 WAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            899999999999999999998887666

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=2.8e-11  Score=97.95  Aligned_cols=104  Identities=24%  Similarity=0.307  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT----SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI  124 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  124 (227)
                      ..++.+...|+.+|+.++|..|+..|.++|+....    ++..|.|+|.|.+.+|+|..|+.+|.+++.++|++.+++++
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            37889999999999999999999999999997544    46689999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          125 RGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       125 la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      -|.|+..+..+..|..+++..+.++-..
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            9999999999999999999999888666

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.37  E-value=4.6e-11  Score=107.07  Aligned_cols=134  Identities=18%  Similarity=0.170  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ....++..|+.++..|++++|...+.++|+++|.++.+|+.+|.+|-++|+.+++....-.|-.++|.+.+.|..++...
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ..+|.+..|.-+|.+|++.+|.+ ........++.+.|+...|...+.++....+
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999 6667778888999999999999988876655

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=9.2e-12  Score=103.29  Aligned_cols=107  Identities=31%  Similarity=0.414  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI  124 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  124 (227)
                      ...+.+...|+..+++|.|..|.++|..+|.++|++    +..|.++|.+..++|+..+|+.+|+.++.++|...+++..
T Consensus       247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~  326 (486)
T KOG0550|consen  247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLR  326 (486)
T ss_pred             HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHH
Confidence            456788999999999999999999999999999985    6789999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 041967          125 RGMARARLGQWEEAANDLHVASKLDYDEEIG  155 (227)
Q Consensus       125 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~  155 (227)
                      .|.|+..+++++.|++.|++|++...+....
T Consensus       327 ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r  357 (486)
T KOG0550|consen  327 RANCHLALEKWEEAVEDYEKAMQLEKDCEIR  357 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccchH
Confidence            9999999999999999999999998774333

>PLN02789 farnesyltranstransferase

Probab=99.36  E-value=1.3e-10  Score=96.72  Aligned_cols=125  Identities=16%  Similarity=0.092  Sum_probs=99.4

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--
Q 041967           59 VDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-KPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW--  135 (227)
Q Consensus        59 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--  135 (227)
                      .++...+.++.|+..+.++|.++|.+..+|..+|.++..+| .+++++..+++++..+|++..+|+.++.++..+|..  
T Consensus        45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence            34556678888888888888888888888888888888887 578888888888888888888888888888878763  


Q ss_pred             HHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          136 EEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       136 ~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ..++..+.+++.++|.| .+|...+.+....|.+.++...+.++.+.++
T Consensus       125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~  173 (320)
T PLN02789        125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV  173 (320)
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC
Confidence            66788888888888888 7788888888888888888888877765433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.36  E-value=7.1e-11  Score=89.53  Aligned_cols=104  Identities=19%  Similarity=0.134  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT---SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      ..+..++..|..+...|+|++|+..|.+++.+.|+   .+.+++++|.++...|++++|+..|++++.++|.+...+..+
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l  112 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence            46788999999999999999999999999998766   346899999999999999999999999999999999999999


Q ss_pred             HHHHH-------HcCCHH-------HHHHHHHHHHhcCCCh
Q 041967          126 GMARA-------RLGQWE-------EAANDLHVASKLDYDE  152 (227)
Q Consensus       126 a~~~~-------~~g~~~-------~A~~~~~~a~~~~p~~  152 (227)
                      |.++.       .+|++.       +|+..|++++..+|.+
T Consensus       113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            99998       777766       5666666777888865

>PRK15331 chaperone protein SicA; Provisional

Probab=99.35  E-value=3.2e-11  Score=89.30  Aligned_cols=104  Identities=12%  Similarity=0.054  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      .+..+..+..|..++..|++++|...|.-....+|.++++|..+|.|+...++|++|+..|..+..++++++...|..|.
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq  113 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      |+..+|+...|..+|..++. .|.+
T Consensus       114 C~l~l~~~~~A~~~f~~a~~-~~~~  137 (165)
T PRK15331        114 CQLLMRKAAKARQCFELVNE-RTED  137 (165)
T ss_pred             HHHHhCCHHHHHHHHHHHHh-Ccch
Confidence            99999999999999999988 3544

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=9.1e-12  Score=96.59  Aligned_cols=118  Identities=25%  Similarity=0.293  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ..+..+...|+.+|....|..|+.+|.++|.++|..+.+|.+++.||++.++++.+..++.+++.+.|+..++++.+|.+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhc------CCChHHHHHHHHHHHhhh
Q 041967          129 RARLGQWEEAANDLHVASKL------DYDEEIGMALKKVEPNAR  166 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~l~~~~~~~~  166 (227)
                      +.....|..|+..+++++.+      .+.++++..|.......-
T Consensus        88 ~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w  131 (284)
T KOG4642|consen   88 LLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRW  131 (284)
T ss_pred             HHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCcc
Confidence            99999999999999999655      334467776666654433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.34  E-value=2.2e-11  Score=104.59  Aligned_cols=129  Identities=17%  Similarity=0.107  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----------------------------------------
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA-----------------------------------------   85 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------------------------------   85 (227)
                      ++..+++|..+|.+...+++=..||..+.++++++|++.                                         
T Consensus       315 dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~  394 (579)
T KOG1125|consen  315 DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE  394 (579)
T ss_pred             ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc
Confidence            446778888888888888888888888888887777763                                         


Q ss_pred             ------------------------------------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           86 ------------------------------------ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        86 ------------------------------------~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                                                          ++...+|.+|...|+|++|+.+|+.||..+|.+...|.+||-++
T Consensus       395 ~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL  474 (579)
T KOG1125|consen  395 NEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATL  474 (579)
T ss_pred             cccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence                                                34444555555555555555555555555555555555555555


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKY  175 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~  175 (227)
                      ..-.+..+|+..|.+|+++.|.. .++.+++..+.++|-+++|...+
T Consensus       475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl  521 (579)
T KOG1125|consen  475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL  521 (579)
T ss_pred             cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence            55555555555555555555555 55555555555555555555555

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.34  E-value=4.1e-11  Score=115.40  Aligned_cols=129  Identities=18%  Similarity=0.194  Sum_probs=111.2

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH--------------H
Q 041967           56 LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK--------------G  121 (227)
Q Consensus        56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~  121 (227)
                      ..|..++..|++++|+..|++++..+|+++.++..+|.+++..|++++|+..|++++..+|++..              .
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            45888999999999999999999999999999999999999999999999999999999987643              1


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          122 YKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       122 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ....|.++...|++++|+..|++++.++|.+ .++..++.++...|++.+|...|+++.+..+.
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~  417 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG  417 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            2345778889999999999999999999988 66778899999999999999999888766553

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.34  E-value=3.7e-12  Score=85.32  Aligned_cols=81  Identities=26%  Similarity=0.321  Sum_probs=73.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 041967           64 EGKLEDAIGQLTEAIMLNPT--SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAAND  141 (227)
Q Consensus        64 ~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  141 (227)
                      +|+|+.|+.+|++++...|+  +..+++.+|.|+++.|++.+|+..+++ +..+|.+...++.+|.|+..+|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            68999999999999999995  466788899999999999999999999 889999999999999999999999999999


Q ss_pred             HHHH
Q 041967          142 LHVA  145 (227)
Q Consensus       142 ~~~a  145 (227)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.33  E-value=9.7e-11  Score=99.96  Aligned_cols=128  Identities=17%  Similarity=0.062  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      .+..++..+...|++++|+..|.+++...|..     ..++..+|.++...|++++|+..|++++..+|+...+++.+|.
T Consensus       143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  222 (389)
T PRK11788        143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGD  222 (389)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHH
Confidence            33444444444444444444444444443332     1133344444444555555555555555555544445555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE--EIGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                      ++...|++++|+..|.+++..+|.+  ..+..++.++...|+++++...++++..
T Consensus       223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~  277 (389)
T PRK11788        223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE  277 (389)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5555555555555555555444443  1233444444444555555554444443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.33  E-value=8.2e-11  Score=113.35  Aligned_cols=130  Identities=17%  Similarity=0.113  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH------
Q 041967           54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM------  127 (227)
Q Consensus        54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~------  127 (227)
                      +...|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++.++|.+..++..++.      
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~  433 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS  433 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            34568889999999999999999999999999999999999999999999999999999999998876655544      


Q ss_pred             ------------------------------------HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHH
Q 041967          128 ------------------------------------ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQE  170 (227)
Q Consensus       128 ------------------------------------~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~  170 (227)
                                                          ++...|++++|+..|+++++++|++ .+...++.++...|++.+
T Consensus       434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~  513 (1157)
T PRK11447        434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ  513 (1157)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence                                                3456799999999999999999998 667789999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 041967          171 HRRKYERLRKERE  183 (227)
Q Consensus       171 a~~~~~~~~~~~~  183 (227)
                      |...++++.+..+
T Consensus       514 A~~~l~~al~~~P  526 (1157)
T PRK11447        514 ADALMRRLAQQKP  526 (1157)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999988876544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.31  E-value=4e-11  Score=98.22  Aligned_cols=130  Identities=22%  Similarity=0.177  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..|+..|..+.+.|++++|+..|+++++.+|+++.++..++.++...|+++++...+.......|.++..+..+|.++
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~  224 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAY  224 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence            45677888888888888888888888888888888888888888888888888888888888888788888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      ..+|++++|+.+|+++++.+|+| .+...++.++...|+.++|...+.++.
T Consensus       225 ~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  225 LQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            88888888888888888888888 556688888888888888887776554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.31  E-value=1.6e-10  Score=93.53  Aligned_cols=104  Identities=17%  Similarity=0.057  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHH
Q 041967           51 ANMTKLKAVDL-ISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYK  123 (227)
Q Consensus        51 ~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~  123 (227)
                      ....+..|..+ +..|+|++|+..|+..+..+|++   +.+++.+|.+|+..|++++|+..|..++..+|++   +.+++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46667777776 67899999999999999999997   5799999999999999999999999999998885   67999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967          124 IRGMARARLGQWEEAANDLHVASKLDYDEEI  154 (227)
Q Consensus       124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~  154 (227)
                      .+|.++..+|+++.|...|+++++..|+...
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            9999999999999999999999999998743

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.31  E-value=1.3e-10  Score=107.58  Aligned_cols=128  Identities=13%  Similarity=0.039  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..+...|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++.. ++.+|.++
T Consensus        48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l  126 (765)
T PRK10049         48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVY  126 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERL  178 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~  178 (227)
                      ...|++.+|+..|++++.+.|++ .+...++.++...+..+.|...+++.
T Consensus       127 ~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~  176 (765)
T PRK10049        127 KRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA  176 (765)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence            99999999999999999999999 66677788887778877777766643

>PLN02789 farnesyltranstransferase

Probab=99.30  E-value=1.7e-10  Score=95.89  Aligned_cols=119  Identities=15%  Similarity=0.121  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHhCCCCHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEG-KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKP--NAAIRDAYVALETNPDSAKGYK  123 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~  123 (227)
                      .+....+|..+|.++...| ++++++..+.+++..+|++..+|..++.++...|..  .+++..+.+++..+|.|..+|.
T Consensus        67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~  146 (320)
T PLN02789         67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS  146 (320)
T ss_pred             CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHH
Confidence            3456778999999999998 689999999999999999999999999999999874  7889999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967          124 IRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA  165 (227)
Q Consensus       124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~  165 (227)
                      .++.++..+|.+++|+.++.++++.+|.| .+|...+.+..+.
T Consensus       147 ~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        147 HRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            99999999999999999999999999999 8888877776554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.29  E-value=1.8e-11  Score=77.81  Aligned_cols=64  Identities=20%  Similarity=0.291  Sum_probs=43.0

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH
Q 041967           56 LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA  119 (227)
Q Consensus        56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~  119 (227)
                      ..|..++..|+|++|+..|++++..+|+++.+++.+|.+++..|++++|+..|++++..+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4566667777777777777777777777777777777777777777777777777777766654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.27  E-value=5.2e-11  Score=107.50  Aligned_cols=139  Identities=18%  Similarity=0.145  Sum_probs=122.7

Q ss_pred             HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH----
Q 041967           46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK----  120 (227)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----  120 (227)
                      ..+.++-.+..+|...|..|+|..|+.+|++++.++|.. +.....+|.|+.++|..+.|+..|++++.++|++..    
T Consensus       159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~  238 (1018)
T KOG2002|consen  159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA  238 (1018)
T ss_pred             hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence            344567889999999999999999999999999999986 457788899999999999999999999999887543    


Q ss_pred             ----------------------------------------------------------------------HHHHHHHHHH
Q 041967          121 ----------------------------------------------------------------------GYKIRGMARA  130 (227)
Q Consensus       121 ----------------------------------------------------------------------~~~~la~~~~  130 (227)
                                                                                            .+|++|.+|.
T Consensus       239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H  318 (1018)
T KOG2002|consen  239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH  318 (1018)
T ss_pred             HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence                                                                                  5889999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCh-H-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          131 RLGQWEEAANDLHVASKLDYDE-E-IGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a~~~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .+|+|+.|..+|..+++.+|++ . ....++.++...|+++.+..+|++..+..+.
T Consensus       319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~  374 (1018)
T KOG2002|consen  319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN  374 (1018)
T ss_pred             hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999998 3 3458999999999999999999999887765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.25  E-value=7.1e-10  Score=93.99  Aligned_cols=130  Identities=17%  Similarity=0.061  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ....+|..+..++..|+++.|+..++..+...|++++++...+.+++..++..+|++.+++++.++|..+..++++|.+|
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al  384 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL  384 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      ...|++.+|+..+...+..+|++ ..|..|+..+...|+..++...+....
T Consensus       385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~  435 (484)
T COG4783         385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY  435 (484)
T ss_pred             HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            99999999999999999999999 889999999999999888887774444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.21  E-value=6.9e-11  Score=75.06  Aligned_cols=64  Identities=25%  Similarity=0.274  Sum_probs=60.2

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967           89 AARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus        89 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      +.+|..++..|++++|+..|++++..+|.++.+++.+|.++..+|++++|+..|++++.++|++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999999999999999999999999999999999986

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.21  E-value=2.1e-09  Score=87.05  Aligned_cols=133  Identities=14%  Similarity=0.062  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      .++..+...|-...+|++||....+..++.|..     +.+|+.++..+....++++|+..+.+|+..+|++..+-+.+|
T Consensus       142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG  221 (389)
T COG2956         142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG  221 (389)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence            355566677777788888888888877777764     567888888888889999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE--EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .++...|+|..|++.++.+++.+|+-  .+...|..++..+|+..+....+.+......+
T Consensus       222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG  281 (389)
T ss_pred             HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence            99999999999999999999999986  66778899999999999988888777766554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=5.7e-10  Score=89.80  Aligned_cols=110  Identities=16%  Similarity=0.101  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHhCCCCHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN---KPNAAIRDAYVALETNPDSAKGYK  123 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~  123 (227)
                      ++.+++.|..+|.+|+..|++..|..-|.+|+.+.|+++.++..+|.+++...   ...++...+++++.++|.+..+.+
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~  231 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS  231 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence            34568899999999999999999999999999999999999999999998874   367899999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 041967          124 IRGMARARLGQWEEAANDLHVASKLDYDEEIGM  156 (227)
Q Consensus       124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  156 (227)
                      .+|..++..|+|.+|+..++..+...|.+..+.
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr  264 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR  264 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence            999999999999999999999999999884444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.19  E-value=3.1e-10  Score=90.96  Aligned_cols=102  Identities=19%  Similarity=0.140  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 041967           86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPN  164 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~  164 (227)
                      .-+-+-|.-+++.++|++|+..|.+||.++|.++..|.++|.+|.++|.++.|++.++.++.++|.. ..|..|+..+..
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            4466678888999999999999999999999999999999999999999999999999999999998 889999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhHH
Q 041967          165 ARRIQEHRRKYERLRKERELKNF  187 (227)
Q Consensus       165 ~~~~~~a~~~~~~~~~~~~~~~~  187 (227)
                      +|++.+|...|++....++..+.
T Consensus       162 ~gk~~~A~~aykKaLeldP~Ne~  184 (304)
T KOG0553|consen  162 LGKYEEAIEAYKKALELDPDNES  184 (304)
T ss_pred             cCcHHHHHHHHHhhhccCCCcHH
Confidence            99999999999999877775443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.18  E-value=1.1e-10  Score=102.79  Aligned_cols=135  Identities=21%  Similarity=0.246  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      .++.+.+..|...+.+++|.++..+++.+++++|-....|+++|.|..+.++++.|..+|.+++.++|++..+|.+++.+
T Consensus       483 ~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a  562 (777)
T KOG1128|consen  483 ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA  562 (777)
T ss_pred             hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence            45667778888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      |...++-.+|...+..|++.+-.+ .+|.+.--+....|+++++...|.++.....
T Consensus       563 yi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~  618 (777)
T KOG1128|consen  563 YIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK  618 (777)
T ss_pred             HHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence            999999999999999999999888 8999999999999999999999987765544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.18  E-value=4.7e-09  Score=77.58  Aligned_cols=130  Identities=17%  Similarity=0.123  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGY  122 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~  122 (227)
                      ..+...+......+..+++..+...++..+..+|++   ..+.+.+|.+++..|++++|+..|+.++...|+.   +.+.
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~   88 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR   88 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            356677788888888999999999999999999998   5678889999999999999999999999988665   4588


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967          123 KIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERL  178 (227)
Q Consensus       123 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  178 (227)
                      +++|.++...|++++|+..+.....-..........+.++...|++.+|+..|++.
T Consensus        89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   89 LRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            89999999999999999999763222212255678999999999999999999764

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.16  E-value=1.6e-09  Score=86.30  Aligned_cols=105  Identities=20%  Similarity=0.128  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKI  124 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  124 (227)
                      +...|..+..+++.|+|..|...|..-++.+|++   +.++|.+|.+++.+|+++.|...|..+++-.|++   +++++.
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            3449999999999999999999999999999985   6799999999999999999999999999999877   578999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 041967          125 RGMARARLGQWEEAANDLHVASKLDYDEEIG  155 (227)
Q Consensus       125 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~  155 (227)
                      +|.+..++|+.+.|...|+++.+..|+.+..
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence            9999999999999999999999999997443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.16  E-value=1.2e-09  Score=99.11  Aligned_cols=106  Identities=14%  Similarity=0.045  Sum_probs=101.2

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      .++...++...+.++.+.+++++|+..+++++..+|+++.+++.+|.++.++|++++|+..|++++..+|++..++..+|
T Consensus       116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a  195 (694)
T PRK15179        116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWA  195 (694)
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      .++...|+.++|...|++++....+-
T Consensus       196 ~~l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        196 QSLTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence            99999999999999999999987653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.15  E-value=1.7e-10  Score=73.79  Aligned_cols=67  Identities=22%  Similarity=0.276  Sum_probs=53.9

Q ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        61 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      ++..|+|++|+..|++++..+|++..+++.+|.||+..|++++|...+++++..+|+++.++..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            3567888888888888888888888888888888888888888888888888888888777766654

...

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.14  E-value=2.3e-09  Score=84.47  Aligned_cols=129  Identities=17%  Similarity=0.165  Sum_probs=118.9

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 041967           55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ  134 (227)
Q Consensus        55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  134 (227)
                      ...+..+...|+-+.+..+..++...+|.+.......|..+...|+|..|+..++++..+.|+++++|..+|.+|.+.|+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence            66788888899999999999998888999988888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          135 WEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       135 ~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ++.|...|.+++++.|.+ .+..+++..+.-.|+.+.|...+....-...
T Consensus       150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~  199 (257)
T COG5010         150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA  199 (257)
T ss_pred             hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence            999999999999999998 6777999999999999999998877664443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.14  E-value=6.9e-09  Score=81.12  Aligned_cols=135  Identities=16%  Similarity=0.114  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH---HHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA---KGYK  123 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~  123 (227)
                      .+..++..|..++..|+|.+|+..|++.+...|.+   +.+.+.+|.+++..|++..|+..+++.+...|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            57899999999999999999999999999998875   57899999999999999999999999999999875   5899


Q ss_pred             HHHHHHHHcC-----------CHHHHHHHHHHHHhcCCChH-H---H--------------HHHHHHHHhhhhHHHHHHH
Q 041967          124 IRGMARARLG-----------QWEEAANDLHVASKLDYDEE-I---G--------------MALKKVEPNARRIQEHRRK  174 (227)
Q Consensus       124 ~la~~~~~~g-----------~~~~A~~~~~~a~~~~p~~~-~---~--------------~~l~~~~~~~~~~~~a~~~  174 (227)
                      .+|.++..+.           ...+|+..|+..+...|+.. +   .              ..++..+.+.|.+..|...
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r  163 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR  163 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            9999976653           34589999999999999851 1   1              1334445566666666666


Q ss_pred             HHHHHHHHHh
Q 041967          175 YERLRKEREL  184 (227)
Q Consensus       175 ~~~~~~~~~~  184 (227)
                      ++.+++.-+.
T Consensus       164 ~~~v~~~yp~  173 (203)
T PF13525_consen  164 FQYVIENYPD  173 (203)
T ss_dssp             HHHHHHHSTT
T ss_pred             HHHHHHHCCC
Confidence            6666655444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.14  E-value=2e-09  Score=78.12  Aligned_cols=103  Identities=18%  Similarity=0.153  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH---HHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA---KGYK  123 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~  123 (227)
                      .+..++..|...+..|+|.+|++.|+......|..   ..+...+|.+|++.+++..|+..+++-|+++|.++   -+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            46889999999999999999999999999988874   56899999999999999999999999999999986   4899


Q ss_pred             HHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCh
Q 041967          124 IRGMARARLGQ---------------WEEAANDLHVASKLDYDE  152 (227)
Q Consensus       124 ~la~~~~~~g~---------------~~~A~~~~~~a~~~~p~~  152 (227)
                      ..|.++..+..               ...|...|+.+++..|+.
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            99999998876               667777777777777765

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.14  E-value=1.6e-09  Score=100.14  Aligned_cols=135  Identities=12%  Similarity=0.019  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+...+..+...+++|++..|+..|.++++.+|.++.+...+..++...|+.++|+.++++++.-.|.....+..+|.++
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            45677888888888888888888888888888887544446777777777777777777777722233333334446677


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ...|+++.|+..|+++++.+|++ .+...+...+...++..+|...++++.+..+.
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~  168 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT  168 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence            77777777777777777777777 55556666666777777777777776655554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.13  E-value=1.7e-09  Score=95.90  Aligned_cols=134  Identities=22%  Similarity=0.125  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      ...|...+..+...+.-++|..++.++-.++|.+++.|+.+|.++...|++.+|.+.|..++.++|+++.....+|.++.
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            46778888888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHH--HHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          131 RLGQWEEAAN--DLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       131 ~~g~~~~A~~--~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ..|+..-|..  .+..+++++|.+ ++|..++.+....|+..+|..+|..+....+.
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES  786 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence            9999888888  999999999999 99999999999999999999999888766554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.13  E-value=9.4e-09  Score=82.47  Aligned_cols=103  Identities=17%  Similarity=0.068  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH---HHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAIL---YAARAGVYVKLNKPNAAIRDAYVALETNPDSA---KGYK  123 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~  123 (227)
                      .+..++..|..++..|+|++|+..|++++...|.++.+   .+.+|.+|++.+++..|+..+++.++.+|+++   .+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            46779999999999999999999999999999998655   48999999999999999999999999999885   5899


Q ss_pred             HHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCh
Q 041967          124 IRGMARARLG---------------Q---WEEAANDLHVASKLDYDE  152 (227)
Q Consensus       124 ~la~~~~~~g---------------~---~~~A~~~~~~a~~~~p~~  152 (227)
                      .+|.++..++               +   ...|+..|+..+...|+.
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S  157 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS  157 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence            9999875554               1   356889999999999985

>TIGR00540 hemY_coli hemY protein

Probab=99.13  E-value=4e-09  Score=91.07  Aligned_cols=131  Identities=12%  Similarity=-0.021  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH--HHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILY--AARAGVYVKLNKPNAAIRDAYVALETNPDSA--KGYKI  124 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~  124 (227)
                      .....+...|..+...|++++|+..+.++++..|++....  ..+....+..++...++..++++++.+|+++  ..+..
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s  340 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA  340 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence            4678899999999999999999999999999999987531  2233444456888999999999999999999  88889


Q ss_pred             HHHHHHHcCCHHHHHHHHH--HHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          125 RGMARARLGQWEEAANDLH--VASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       125 la~~~~~~g~~~~A~~~~~--~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      +|.++...|++++|.++|+  .++...|++.....++.++...|+..+|...|++..
T Consensus       341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       341 LGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999  688899999777799999999999999999887654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.12  E-value=7.5e-10  Score=98.06  Aligned_cols=105  Identities=24%  Similarity=0.293  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHhCCCCHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIR--DAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~la~  127 (227)
                      .+..|+..|..+..+|++.+|...|..|+.++|++..+...+|.++...|+..-|..  .+..+++++|.++++|+.+|.
T Consensus       683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~  762 (799)
T KOG4162|consen  683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE  762 (799)
T ss_pred             hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999998887777  999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDEEI  154 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~~~  154 (227)
                      ++...|+.++|..+|+.|+++++.+++
T Consensus       763 v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  763 VFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHccchHHHHHHHHHHHhhccCCCc
Confidence            999999999999999999999988754

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.12  E-value=4.7e-09  Score=85.07  Aligned_cols=138  Identities=15%  Similarity=0.097  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-HHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-KGYKIRGM  127 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~  127 (227)
                      ..+..+.+++..+....+.+.|+..+.+|+..+|++..+-..+|.++...|+|++|+..++.+++.||... .+.-.+..
T Consensus       178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~  257 (389)
T COG2956         178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE  257 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999985 78889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKN  186 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  186 (227)
                      ||..+|+..+....+.++.+..++.++...+..+.........|...+.+..+..+...
T Consensus       258 ~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~  316 (389)
T COG2956         258 CYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR  316 (389)
T ss_pred             HHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence            99999999999999999999999987777777777777778888888877776666543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.12  E-value=4.6e-09  Score=97.38  Aligned_cols=132  Identities=18%  Similarity=0.032  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL  132 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  132 (227)
                      ....-..+..-.|++++|+..+.+++..+|..+.++..+|.++...|++.+|+..|++++.++|.++.+++.+|.++...
T Consensus        17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~   96 (765)
T PRK10049         17 QIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA   96 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            33444566778899999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 041967          133 GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELK  185 (227)
Q Consensus       133 g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  185 (227)
                      |++++|+..+++++...|++ . +..++.++...|+..+|...++++.+..+..
T Consensus        97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~  149 (765)
T PRK10049         97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT  149 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999 6 7789999999999999999999998877653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.12  E-value=2.1e-09  Score=87.83  Aligned_cols=136  Identities=20%  Similarity=0.165  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---------
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---------  118 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------  118 (227)
                      +++..++|.+|.+|+..|+-..|+..+.++|.+.|+...+...+|.+++++|+++.|..+|..+|..+|.+         
T Consensus        69 p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqsk  148 (504)
T KOG0624|consen   69 PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSK  148 (504)
T ss_pred             chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence            35677888888888888888888888888888888888888888888888888888888888888877743         


Q ss_pred             ----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 041967          119 ----------------------------------------AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMA  157 (227)
Q Consensus       119 ----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~  157 (227)
                                                              ...+..++.||...|+...|+..+..+-++..++ +....
T Consensus       149 l~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yk  228 (504)
T KOG0624|consen  149 LALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYK  228 (504)
T ss_pred             HHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHH
Confidence                                                    2256667889999999999999999999988887 66778


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          158 LKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       158 l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ++.++...|+.+.+...++.+.+.++
T Consensus       229 is~L~Y~vgd~~~sL~~iRECLKldp  254 (504)
T KOG0624|consen  229 ISQLLYTVGDAENSLKEIRECLKLDP  254 (504)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHccCc
Confidence            88888888888888888777776655

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=2.5e-09  Score=83.64  Aligned_cols=104  Identities=22%  Similarity=0.234  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCC----------HHHHHHHHHHHHHcCCcHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIM--------LNPTS----------AILYAARAGVYVKLNKPNAAIRDAYV  110 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--------~~p~~----------~~~~~~~g~~~~~~~~~~~A~~~~~~  110 (227)
                      .....+...|+.+|+.|+|.+|...|..|+.        -.|.+          ...+.|++.|++..|+|-+++..+..
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            3467899999999999999999999999983        24443          45788999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          111 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       111 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ++..+|.|.++||.+|.++...=+..+|...|.+++.++|.-
T Consensus       256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            999999999999999999999999999999999999999975

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=7.9e-10  Score=91.97  Aligned_cols=137  Identities=20%  Similarity=0.216  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------------AILYAARAGVYVKLNKPNAAIRDAYVALETN  115 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  115 (227)
                      ....++++..|.+++-..+.+.|+..|+++|.++|+.            ...+-..|.-.++.|++..|-+.|..+|.++
T Consensus       200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id  279 (486)
T KOG0550|consen  200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID  279 (486)
T ss_pred             cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence            3568899999999999999999999999999999985            3467788999999999999999999999999


Q ss_pred             CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          116 PDSA----KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       116 p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      |.+.    ..|.++|.+..++|...+|+..+..++.++|.- ......+.++..+++|+++.+.++++.+....
T Consensus       280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9874    689999999999999999999999999999887 66778889999999999999999888766543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.11  E-value=1.7e-10  Score=97.75  Aligned_cols=113  Identities=28%  Similarity=0.394  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..+...++..+..+.|+.|+..|.+||+++|+++.++.+++.++.+.++|..|+.++.++|+++|...++|++.|.+.
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVE  162 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~  162 (227)
                      ..++++.+|...|++...+.|++ .+...+.++.
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            99999999999999999999998 4444444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.11  E-value=6.8e-10  Score=72.05  Aligned_cols=70  Identities=27%  Similarity=0.405  Sum_probs=55.2

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        58 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      ...++..++|++|+.++++++..+|+++..++.+|.+++..|++.+|+.+|+++++..|+++.+....+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            3567788888888888888888888888888888888888888888888888888888887776655443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.10  E-value=2.2e-09  Score=71.34  Aligned_cols=94  Identities=28%  Similarity=0.301  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967           87 LYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA  165 (227)
Q Consensus        87 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~  165 (227)
                      +++++|.+++..|++++|+..+++++...|.+..+++.+|.++...|+++.|+..|.+++...|.+ ..+..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999998 6778888999999


Q ss_pred             hhHHHHHHHHHHHHH
Q 041967          166 RRIQEHRRKYERLRK  180 (227)
Q Consensus       166 ~~~~~a~~~~~~~~~  180 (227)
                      |++..+...+....+
T Consensus        82 ~~~~~a~~~~~~~~~   96 (100)
T cd00189          82 GKYEEALEAYEKALE   96 (100)
T ss_pred             HhHHHHHHHHHHHHc
Confidence            999988888776653

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.10  E-value=1e-08  Score=80.51  Aligned_cols=133  Identities=20%  Similarity=0.156  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      .......|..+-..|.|++|+++|+..+.-+|++..++-..-.+...+|..-.||+.+...+...+.+.++|..++.+|.
T Consensus        86 ~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~  165 (289)
T KOG3060|consen   86 KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYL  165 (289)
T ss_pred             hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            45566778888889999999999999999999988888888778888899999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHH
Q 041967          131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARR---IQEHRRKYERLRKERE  183 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~  183 (227)
                      ..|+|+.|.-+|+.++-+.|.+ .....++.+....|.   ..-++..|.+.++..+
T Consensus       166 ~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  166 SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            9999999999999999999998 445677777765554   3445556666665555

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.09  E-value=4.4e-10  Score=94.72  Aligned_cols=135  Identities=13%  Similarity=-0.073  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      .++.++.+.|+..|.+|++++|...|.++|.-+..+..+++++|..+-.+|+.++|+.+|-+.-.+--++..+++.++.+
T Consensus       488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qiani  567 (840)
T KOG2003|consen  488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI  567 (840)
T ss_pred             cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999987766666789999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      |..+.+..+|+++|.++..+-|++ .+...|+.++.+-|+-.++.+++-...+..+
T Consensus       568 ye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp  623 (840)
T KOG2003|consen  568 YELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP  623 (840)
T ss_pred             HHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC
Confidence            999999999999999999999999 6677999999999988888777655544444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.08  E-value=4e-09  Score=79.90  Aligned_cols=121  Identities=10%  Similarity=-0.006  Sum_probs=96.2

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC
Q 041967           59 VDLISEGKLEDAIGQLTEAIMLNPTS--AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLG  133 (227)
Q Consensus        59 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g  133 (227)
                      +.+|-...|..+...+...+..++..  ..+++++|.++...|++++|+..|++++.+.|+.   +.+|+++|.++...|
T Consensus         7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g   86 (168)
T CHL00033          7 NDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG   86 (168)
T ss_pred             cccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence            34555566777777776665666554  6688999999999999999999999999997763   458999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH-------hhhhHHHHHHHHHHHH
Q 041967          134 QWEEAANDLHVASKLDYDE-EIGMALKKVEP-------NARRIQEHRRKYERLR  179 (227)
Q Consensus       134 ~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~-------~~~~~~~a~~~~~~~~  179 (227)
                      ++++|+..|.+++.+.|.. ..+..++.++.       ..|++..+...+.+..
T Consensus        87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~  140 (168)
T CHL00033         87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA  140 (168)
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence            9999999999999999997 66667777777       5555555555554443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.07  E-value=3.4e-09  Score=89.77  Aligned_cols=97  Identities=19%  Similarity=0.117  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNAR  166 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~  166 (227)
                      +...|..++..|+|..|+..|++++.++|++..+|+.+|.++..+|++++|+..+.+++.++|.+ ..+..++.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            55678999999999999999999999999999999999999999999999999999999999998 77889999999999


Q ss_pred             hHHHHHHHHHHHHHHHHh
Q 041967          167 RIQEHRRKYERLRKEREL  184 (227)
Q Consensus       167 ~~~~a~~~~~~~~~~~~~  184 (227)
                      ++.+|...++++.+..+.
T Consensus        85 ~~~eA~~~~~~al~l~P~  102 (356)
T PLN03088         85 EYQTAKAALEKGASLAPG  102 (356)
T ss_pred             CHHHHHHHHHHHHHhCCC
Confidence            999999999999877665

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=5.5e-09  Score=89.99  Aligned_cols=130  Identities=13%  Similarity=0.085  Sum_probs=97.0

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-------CCCHHHHHHHHH
Q 041967           55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN-------PDSAKGYKIRGM  127 (227)
Q Consensus        55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~  127 (227)
                      .-+|..+...+++.-|..+|.+|+.+.|.++-.+..+|.+.+..+.|.+|..+|+.++..-       +.+...+.++|.
T Consensus       384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH  463 (611)
T KOG1173|consen  384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH  463 (611)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence            3466666666777777777777777777777777777777777777777777777766221       124456788888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ++.+++.+.+|+.+|++++.+.|.+ .....++-++...|++..|...|.+.....+.
T Consensus       464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~  521 (611)
T KOG1173|consen  464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD  521 (611)
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence            8888888888888888888888888 67778888888888888888888777666554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.06  E-value=6.3e-09  Score=73.49  Aligned_cols=100  Identities=16%  Similarity=0.079  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHH
Q 041967           85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE----EIGMA  157 (227)
Q Consensus        85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~  157 (227)
                      +..++.+|..+...|++++|+..|.+++..+|++   ..+++.+|.++...|+++.|+..|+.++..+|++    .++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999999887   5789999999999999999999999999999884    45778


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          158 LKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       158 l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ++.++...+++.++...+..+....+.
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence            899999999999999999888777654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.05  E-value=5.3e-09  Score=88.79  Aligned_cols=104  Identities=28%  Similarity=0.319  Sum_probs=96.0

Q ss_pred             HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      ..++++..+-..+.+++..++..+|++.+++++.++|+.+..+.++|.++++.|++.+|+..++..+..+|+++..|..+
T Consensus       335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~L  414 (484)
T COG4783         335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLL  414 (484)
T ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHH
Confidence            34456777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC
Q 041967          126 GMARARLGQWEEAANDLHVASKLD  149 (227)
Q Consensus       126 a~~~~~~g~~~~A~~~~~~a~~~~  149 (227)
                      |.+|..+|+..+|...+-..+.+.
T Consensus       415 Aqay~~~g~~~~a~~A~AE~~~~~  438 (484)
T COG4783         415 AQAYAELGNRAEALLARAEGYALA  438 (484)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHhC
Confidence            999999999999988877666554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.04  E-value=1.8e-08  Score=71.55  Aligned_cols=104  Identities=28%  Similarity=0.359  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH----HHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA----KGYKI  124 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~  124 (227)
                      .....+-..|..+...|+.+.|++.|.++|.+.|..+.+|.|++..+..+|+.++|+.++++++++-....    .++..
T Consensus        41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ  120 (175)
T KOG4555|consen   41 KASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ  120 (175)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence            34567778889999999999999999999999999999999999999999999999999999999975543    48889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          125 RGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       125 la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      +|.+|..+|+-+.|...|..+.++....
T Consensus       121 Rg~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  121 RGLLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence            9999999999999999999999887553

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.04  E-value=1.6e-08  Score=87.07  Aligned_cols=132  Identities=15%  Similarity=0.086  Sum_probs=116.4

Q ss_pred             HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      ..++.+......+..+...|+.++|...+.++++. |.++.....++.+  ..+++.+++..++..++.+|+++..++.+
T Consensus       258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~l  334 (398)
T PRK10747        258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTL  334 (398)
T ss_pred             HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            34456788899999999999999999999999995 4456655445544  45999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          126 GMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       126 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                      |.++...+++.+|..+|++++...|++.....++.++...|+..++...|++...
T Consensus       335 grl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        335 GQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999998888999999999999999998876643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.03  E-value=1.1e-08  Score=92.83  Aligned_cols=114  Identities=16%  Similarity=0.120  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ++.+|..|..+..+|+|++|..+|.+++..+|++ .-+++.+|..|.+.|+++.++.+|+++++.+|++.+....+|.+|
T Consensus       307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly  386 (1018)
T KOG2002|consen  307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY  386 (1018)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence            4456666666666666666666666666666555 445556666666666666666666666666666666666666666


Q ss_pred             HHcC----CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 041967          130 ARLG----QWEEAANDLHVASKLDYDE-EIGMALKKVEPN  164 (227)
Q Consensus       130 ~~~g----~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~  164 (227)
                      ...+    ..+.|...+.+++...|.+ ..|..++.++..
T Consensus       387 a~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~  426 (1018)
T KOG2002|consen  387 AHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ  426 (1018)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence            5554    3445555666666666555 555555444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.01  E-value=1.9e-08  Score=71.65  Aligned_cols=96  Identities=24%  Similarity=0.081  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC---CHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPD---SAKGYKIR  125 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l  125 (227)
                      .++|+.|..+-..|+.++|+.+|.+++......   ..++..+|.++..+|++++|+..++.++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578999999999999999999999999975544   568999999999999999999999999999888   77888889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q 041967          126 GMARARLGQWEEAANDLHVASK  147 (227)
Q Consensus       126 a~~~~~~g~~~~A~~~~~~a~~  147 (227)
                      +.++...|++++|+..+..++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999887764

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.00  E-value=7.2e-10  Score=89.96  Aligned_cols=121  Identities=16%  Similarity=0.132  Sum_probs=60.6

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCC
Q 041967           58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP---DSAKGYKIRGMARARLGQ  134 (227)
Q Consensus        58 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~  134 (227)
                      |..||-.++.+-|+.+|.+.|.+.-.++..+.|+|.|.+.-++++-++..|++++..-.   .-.++||++|.+....|+
T Consensus       331 a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD  410 (478)
T KOG1129|consen  331 AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD  410 (478)
T ss_pred             eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence            33334444444444444444444444455555555555555555555555555554321   123455555555555555


Q ss_pred             HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967          135 WEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERL  178 (227)
Q Consensus       135 ~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~  178 (227)
                      +.-|.++|+-++..+|++ ++..+|+.+..+.|++.+|+..+..+
T Consensus       411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  411 FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA  455 (478)
T ss_pred             hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence            555555555555555555 44445555555555555555544433

>TIGR00540 hemY_coli hemY protein

Probab=98.99  E-value=8.3e-08  Score=82.89  Aligned_cols=132  Identities=11%  Similarity=-0.022  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-KGYKIRGMA  128 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~  128 (227)
                      .+......|...+..|+|+.|.+.+.++.+..|....++...|.++...|+++.|..++.++.+..|++. .+....+.+
T Consensus        83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l  162 (409)
T TIGR00540        83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI  162 (409)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence            4667788999999999999999999999999998888888899999999999999999999999999986 566667999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      +...|+++.|...++...+..|++ .+...++.++...|++.++...+..+.+.
T Consensus       163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA  216 (409)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            999999999999999999999999 77889999999999999999988888765

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.99  E-value=3.3e-08  Score=89.13  Aligned_cols=103  Identities=19%  Similarity=0.098  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ..+.+|+.+|.++-.+|+.++++.....|-.++|.+...|..++....++|++.+|+-+|.+||+.+|.+.+.++.++.+
T Consensus       171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L  250 (895)
T KOG2076|consen  171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSL  250 (895)
T ss_pred             cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCC
Q 041967          129 RARLGQWEEAANDLHVASKLDYD  151 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~  151 (227)
                      |.++|++..|+..|.+++.+.|.
T Consensus       251 ~~~~G~~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  251 YQKTGDLKRAMETFLQLLQLDPP  273 (895)
T ss_pred             HHHhChHHHHHHHHHHHHhhCCc
Confidence            99999999999999999999994

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.98  E-value=1.7e-08  Score=93.00  Aligned_cols=134  Identities=11%  Similarity=-0.068  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH--------
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA--------  119 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--------  119 (227)
                      +....++..+...+...+++++|+..+..++..+|+...+|+.+|.++++.+++..+...  .++...+.+.        
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~  105 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI  105 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence            356889999999999999999999999999999999999999999999999988776665  5555555554        


Q ss_pred             -----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          120 -----------KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       120 -----------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                                 .+++.+|.||..+|++++|...|+++++++|+| .+..+++-.+... +.++|...+.+++...-.
T Consensus       106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~  181 (906)
T PRK14720        106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK  181 (906)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence                       899999999999999999999999999999999 7777888888777 999999999888766443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.98  E-value=1.9e-08  Score=76.49  Aligned_cols=97  Identities=14%  Similarity=0.064  Sum_probs=82.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 041967           82 PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMA  157 (227)
Q Consensus        82 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~  157 (227)
                      +..+.+++++|.++...|++++|+.+|++++...|+.   ..+++.+|.++...|+++.|+..|.+++.+.|.+ ..+..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            4467789999999999999999999999999987764   4689999999999999999999999999999998 66778


Q ss_pred             HHHHHHhhhhHHHHHHHHHHH
Q 041967          158 LKKVEPNARRIQEHRRKYERL  178 (227)
Q Consensus       158 l~~~~~~~~~~~~a~~~~~~~  178 (227)
                      ++.++...|+...+...+...
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A  132 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEA  132 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHH
Confidence            888888877765555554443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.98  E-value=1.3e-08  Score=94.16  Aligned_cols=131  Identities=12%  Similarity=-0.040  Sum_probs=109.1

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 041967           56 LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW  135 (227)
Q Consensus        56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  135 (227)
                      .....+...|++++|+.++++++...|.....+..+|.++...|++++|+..|+++++.+|+++.+++.++.++...++.
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~  152 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG  152 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence            66777788899999999999999444555555555588999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Q 041967          136 EEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKN  186 (227)
Q Consensus       136 ~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  186 (227)
                      ++|+..+.++...+|.+.....+..+....++..++...++++....+...
T Consensus       153 ~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~  203 (822)
T PRK14574        153 GVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSE  203 (822)
T ss_pred             HHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999974445556666556777679999999888877643

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.98  E-value=2.9e-08  Score=87.67  Aligned_cols=136  Identities=18%  Similarity=0.050  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------cHHHHHHHHHHHHh--CC
Q 041967           50 AANMTKLKAVDLISEGK---LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK--------PNAAIRDAYVALET--NP  116 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~--~p  116 (227)
                      .+-.++.+|..++..++   +..|+.+|++|++++|+++.++..++.+|.....        ...+.....+++.+  +|
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            45678889988888766   8899999999999999999999999988866422        34556666666664  77


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 041967          117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELK  185 (227)
Q Consensus       117 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  185 (227)
                      ..+.+|..+|..+...|++++|...|++++.++|+...+..++.++...|+.++|...|.++....+..
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~  486 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE  486 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            888999999999999999999999999999999966778899999999999999999999988777763

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=3.3e-08  Score=79.69  Aligned_cols=119  Identities=18%  Similarity=0.053  Sum_probs=108.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 041967           66 KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ---WEEAANDL  142 (227)
Q Consensus        66 ~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~  142 (227)
                      +.+..+.-++.-+..+|+++.-|..+|.+|+.+|++..|...|.+++++.|+++..+..+|.++....+   ..++...|
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            467778888889999999999999999999999999999999999999999999999999999876653   45799999


Q ss_pred             HHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          143 HVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       143 ~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .+++.++|+| .+...|+......|++.+|...++.+.+..+.
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            9999999999 77889999999999999999999999877553

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.97  E-value=1.3e-08  Score=75.17  Aligned_cols=96  Identities=17%  Similarity=0.152  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      ...+.+.+|..++..|+|++|+..|+.++...|+.   +.+.+.+|.+++..|++++|+..++. +.-.+-.+.++..+|
T Consensus        47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~G  125 (145)
T PF09976_consen   47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLG  125 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHH
Confidence            35778899999999999999999999999987664   45788999999999999999999966 344455567888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHH
Q 041967          127 MARARLGQWEEAANDLHVAS  146 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~  146 (227)
                      .++...|++++|+..|++++
T Consensus       126 di~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  126 DIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHhC
Confidence            99999999999999999874

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.97  E-value=1.8e-08  Score=88.03  Aligned_cols=133  Identities=15%  Similarity=0.127  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR  131 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  131 (227)
                      ..+|..+...+..++|...+...+..|+..|..++.+...|..+..+|+-++|......+++.++.....|..+|.++..
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence            46777778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          132 LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       132 ~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ..+|++|+++|..|+.++|+| .++.-++-+..+.+++........++....+.
T Consensus        88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~  141 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS  141 (700)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence            888888888888888888888 77777777777777776665555555544443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=7.9e-09  Score=89.03  Aligned_cols=132  Identities=15%  Similarity=0.078  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      |..+-.|+..|..|+..|.+.+|.++|.++..++|....+|...|..+...|..++|+.+|..|-++-|....-.+.+|.
T Consensus       309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm  388 (611)
T KOG1173|consen  309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM  388 (611)
T ss_pred             CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999989999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      =|.+++.++-|.+.|.+|+.+.|.+ -+...++-+....+.+.+|...|+...
T Consensus       389 ey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l  441 (611)
T KOG1173|consen  389 EYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL  441 (611)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence            9999999999999999999999999 556789999999999999999997766

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.96  E-value=4.2e-08  Score=82.77  Aligned_cols=131  Identities=15%  Similarity=0.033  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------------------------------------HHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAIL-------------------------------------YAARAG   93 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------------------------------~~~~g~   93 (227)
                      .+.....|..++..|++++|+..+.+++..+|.+..+                                     +..+|.
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  122 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF  122 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence            4556677888888888888888888888777766433                                     335566


Q ss_pred             HHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-H----HHHHHHHHHHhhhhH
Q 041967           94 VYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-E----IGMALKKVEPNARRI  168 (227)
Q Consensus        94 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~----~~~~l~~~~~~~~~~  168 (227)
                      ++...|++++|+..+++++.++|+++.++..+|.++...|++++|+.++.+++...|.+ .    .+..++.++...|++
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~  202 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY  202 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence            77778888888888888888888888888888888888888888888888888877643 1    233677777888888


Q ss_pred             HHHHHHHHHHHHH
Q 041967          169 QEHRRKYERLRKE  181 (227)
Q Consensus       169 ~~a~~~~~~~~~~  181 (227)
                      .++...+++....
T Consensus       203 ~~A~~~~~~~~~~  215 (355)
T cd05804         203 EAALAIYDTHIAP  215 (355)
T ss_pred             HHHHHHHHHHhcc
Confidence            8888888776544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.93  E-value=5.8e-09  Score=66.62  Aligned_cols=65  Identities=28%  Similarity=0.271  Sum_probs=57.7

Q ss_pred             HHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 041967           95 YVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALK  159 (227)
Q Consensus        95 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~  159 (227)
                      ++..|++++|+..|++++..+|++..+++.+|.||...|++++|...+.+++..+|++ ..+..++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            3578999999999999999999999999999999999999999999999999999997 4444443

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.92  E-value=8.7e-09  Score=66.76  Aligned_cols=64  Identities=28%  Similarity=0.357  Sum_probs=60.2

Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH
Q 041967           92 AGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIG  155 (227)
Q Consensus        92 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~  155 (227)
                      ...|...+++++|+.++++++.++|+++..|+.+|.++..+|++.+|+..|+++++..|++...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            4678899999999999999999999999999999999999999999999999999999988443

>PRK11906 transcriptional regulator; Provisional

Probab=98.92  E-value=7.5e-08  Score=82.12  Aligned_cols=134  Identities=13%  Similarity=0.004  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHCCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHHhCCC
Q 041967           53 MTKLKAVDLISEGK---LEDAIGQLTEAI---MLNPTSAILYAARAGVYVKL---------NKPNAAIRDAYVALETNPD  117 (227)
Q Consensus        53 ~~~~~g~~~~~~~~---~~~A~~~~~~al---~~~p~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~  117 (227)
                      .++..|...+..+.   ...|+.+|.+++   .++|..+.+|..++.|++..         ....+|....+++++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            45777777777764   467888999999   89999999999999998775         1245688888999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Q 041967          118 SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELKN  186 (227)
Q Consensus       118 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  186 (227)
                      ++.+++.+|.++...++++.|...|++|+.++|+. ..+...+.+..-.|+.+++...+++..+..+.+.
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            99999999999999999999999999999999998 7788889999999999999999998887777643

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.91  E-value=2.5e-07  Score=79.60  Aligned_cols=134  Identities=10%  Similarity=-0.050  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCcHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAAR-AGVYVKLNKPNAAIRDAYVALETNPDSAK-GYKIRG  126 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la  126 (227)
                      ..+...+..|...+..|+|++|.+...++-...+ .+..++.+ +.+..+.|+++.|..++.++.+.+|++.. .....+
T Consensus        82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a  160 (398)
T PRK10747         82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRV  160 (398)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            3567788999999999999999988887665443 34544444 66669999999999999999999999864 445569


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      .++...|+++.|...+++..+.+|++ .+...+..++...|+|.++...+..+.+...
T Consensus       161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~  218 (398)
T PRK10747        161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV  218 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999 7788999999999999999988877776543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.91  E-value=8.9e-09  Score=87.57  Aligned_cols=69  Identities=23%  Similarity=0.237  Sum_probs=64.2

Q ss_pred             HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967           46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI---LYAARAGVYVKLNKPNAAIRDAYVALET  114 (227)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~g~~~~~~~~~~~A~~~~~~al~~  114 (227)
                      ..++.+..++++|..++..|+|++|+..|+++|.++|++..   +|+|+|.||..+|++++|+.++++++.+
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44567899999999999999999999999999999999885   4999999999999999999999999997

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.91  E-value=3.2e-08  Score=76.29  Aligned_cols=112  Identities=19%  Similarity=0.131  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++++|..|=..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+|+.|...|+.+++++|.+.-++.++|..+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCChH---HHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDEE---IGMALKKV  161 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~~---~~~~l~~~  161 (227)
                      ..-|.+.-|...+.+..+-+|.++   .|..+.+.
T Consensus       144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~  178 (297)
T COG4785         144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ  178 (297)
T ss_pred             eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            999999999999999999999973   35544443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.88  E-value=7.8e-09  Score=69.06  Aligned_cols=79  Identities=22%  Similarity=0.187  Sum_probs=69.6

Q ss_pred             cCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHH
Q 041967           98 LNKPNAAIRDAYVALETNPD--SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRK  174 (227)
Q Consensus        98 ~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~  174 (227)
                      .|+++.|+..+++++..+|.  +...++.+|.|++.+|++++|+..+++ ...+|.+ .....++.++..+|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            68999999999999999996  466788899999999999999999999 8888887 7777889999999999999998


Q ss_pred             HHH
Q 041967          175 YER  177 (227)
Q Consensus       175 ~~~  177 (227)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            865

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=8.2e-08  Score=80.32  Aligned_cols=133  Identities=15%  Similarity=0.101  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----------------------------------AILYAARAGV   94 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------------------~~~~~~~g~~   94 (227)
                      ++..-+...|.+++..|++.+|+..|.++..++|..                                  ..-|+--|..
T Consensus       230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~  309 (564)
T KOG1174|consen  230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL  309 (564)
T ss_pred             ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence            456778899999999999999999999999999875                                  2345555666


Q ss_pred             HHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHH
Q 041967           95 YVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRR  173 (227)
Q Consensus        95 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~  173 (227)
                      .+..+++..|+..-+++|..+|.+..+++..|.++..+|...+|+..|+.|..+.|.. ++...+-..+...+.+++|..
T Consensus       310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~  389 (564)
T KOG1174|consen  310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA  389 (564)
T ss_pred             hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence            6777889999999999999999999999999999999999999999999999999998 889999999999999998887


Q ss_pred             HHHHHHHH
Q 041967          174 KYERLRKE  181 (227)
Q Consensus       174 ~~~~~~~~  181 (227)
                      -.+...+.
T Consensus       390 ~An~~~~~  397 (564)
T KOG1174|consen  390 LANWTIRL  397 (564)
T ss_pred             HHHHHHHH
Confidence            66555444

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.87  E-value=6.5e-08  Score=72.58  Aligned_cols=90  Identities=24%  Similarity=0.220  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 041967           67 LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK----------PNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ--  134 (227)
Q Consensus        67 ~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--  134 (227)
                      |+.|.+.++.....+|.++..+++-|.+++.+.+          ++.|+.-|+.||.++|+...+++.+|.+|...+.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            6889999999999999999999999999888754          4568999999999999999999999999998874  


Q ss_pred             ---------HHHHHHHHHHHHhcCCChHHHH
Q 041967          135 ---------WEEAANDLHVASKLDYDEEIGM  156 (227)
Q Consensus       135 ---------~~~A~~~~~~a~~~~p~~~~~~  156 (227)
                               |+.|..+|++|...+|+|+...
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~  117 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYR  117 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence                     7889999999999999996654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=8.7e-08  Score=80.16  Aligned_cols=136  Identities=16%  Similarity=0.078  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH-------------------------
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNA-------------------------  103 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~-------------------------  103 (227)
                      +...++..+|..+...++.++|+-.|..|+.+.|...++|-.+-.||+..|.+.+                         
T Consensus       332 r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~  411 (564)
T KOG1174|consen  332 RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTL  411 (564)
T ss_pred             ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcce
Confidence            4567788888888888899998888998888888888888888888877777665                         


Q ss_pred             -----------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHH
Q 041967          104 -----------AIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHR  172 (227)
Q Consensus       104 -----------A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~  172 (227)
                                 |...++++++++|....+...+|.++..-|.+.+++..+++++...|+......++.+......+.++.
T Consensus       412 V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am  491 (564)
T KOG1174|consen  412 VLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAM  491 (564)
T ss_pred             eeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHH
Confidence                       445555666677778888888888888999999999999999999888888888899988888899999


Q ss_pred             HHHHHHHHHHHh
Q 041967          173 RKYERLRKEREL  184 (227)
Q Consensus       173 ~~~~~~~~~~~~  184 (227)
                      ..|..+.+.++.
T Consensus       492 ~~y~~ALr~dP~  503 (564)
T KOG1174|consen  492 EYYYKALRQDPK  503 (564)
T ss_pred             HHHHHHHhcCcc
Confidence            999888877665

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=5.6e-07  Score=70.92  Aligned_cols=172  Identities=14%  Similarity=0.017  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 041967           54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG  133 (227)
Q Consensus        54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  133 (227)
                      +-....+.+-.|+.+-|..++++.....|.+.......|..+-..|++++|+++|+..+.-+|.+...+-+.--+...+|
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G  134 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG  134 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC
Confidence            33445566677999999999999988889999999999999999999999999999999999999999999888899999


Q ss_pred             CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh---------hhcH-HH
Q 041967          134 QWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELKNFERERQRKQA---------GADR-EA  202 (227)
Q Consensus       134 ~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~  202 (227)
                      +..+|++.+...+..++.| ++|..+++++...|.+..|..+++.++=..|.......+.++-.         .... -.
T Consensus       135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy  214 (289)
T KOG3060|consen  135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY  214 (289)
T ss_pred             CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999999999999 99999999999999999999999998866665433333332221         1111 11


Q ss_pred             -Hhhhhh-hhhhhhhhhhhhhhccc
Q 041967          203 -LSGLRD-GMASDFFSLCFCNIVGA  225 (227)
Q Consensus       203 -~~~l~~-~~~~~~~~~~~~~~~~~  225 (227)
                       .++--. ..+++.+.+|.|+.-.|
T Consensus       215 ~~alkl~~~~~ral~GI~lc~~~la  239 (289)
T KOG3060|consen  215 ERALKLNPKNLRALFGIYLCGSALA  239 (289)
T ss_pred             HHHHHhChHhHHHHHHHHHHHHHHH
Confidence             111122 37788888888876544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.85  E-value=7.2e-07  Score=67.40  Aligned_cols=131  Identities=16%  Similarity=0.162  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC--HHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIM-LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS--AKGYKIRGM  127 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~  127 (227)
                      ..-.+.+|+.+...|++.+|...|++++. +.-+++..+..++...+..+++..|...++...+.+|..  ++....+|.
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR  168 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR  168 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence            45578899999999999999999999997 667789999999999999999999999999999999864  678999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      ++...|.+.+|...|+.++...|+....-..+......|...++..++..+.+.
T Consensus       169 ~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~  222 (251)
T COG4700         169 TLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDT  222 (251)
T ss_pred             HHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            999999999999999999999999877777888888889888888888666544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.85  E-value=8.4e-08  Score=81.72  Aligned_cols=70  Identities=19%  Similarity=0.098  Sum_probs=67.1

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967           80 LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKG---YKIRGMARARLGQWEEAANDLHVASKLD  149 (227)
Q Consensus        80 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a~~~~  149 (227)
                      .+|+++.+++++|.+|+..|+|++|+..|+++|+++|++..+   |+++|.+|..+|++++|+.+|++|+.+.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            589999999999999999999999999999999999999865   9999999999999999999999999983

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.85  E-value=1.7e-07  Score=75.89  Aligned_cols=100  Identities=14%  Similarity=0.043  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHH-HHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHH
Q 041967           85 AILYAARAGVY-VKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE----EIGM  156 (227)
Q Consensus        85 ~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~  156 (227)
                      ...+|..|..+ +..|+|++|+..|+..+..+|+.   +.+++++|.+|+..|++++|+..|.+++...|++    +++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46788888876 56799999999999999999998   5799999999999999999999999999999984    4466


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          157 ALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       157 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .++.++...|+..+|...|+.+++..+.
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            7888999999999999999999887765

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.83  E-value=1.8e-07  Score=79.19  Aligned_cols=133  Identities=14%  Similarity=0.048  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      -.+.++.++.+++.|-...+..+|++.|.++..+-|+++.++..+|..|-+-|+-.+|.+++-...+..|.+.+..-++|
T Consensus       554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~  633 (840)
T KOG2003|consen  554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA  633 (840)
T ss_pred             HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence            34678889999999999999999999999998888888888887877777777666665555555555555555555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHhhhhHHHHHHHHHHHH
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDEEIGM-ALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      ..|....-.+.|+.+|+++.-+.|+..-|. .+..+..+.|++..+...|+...
T Consensus       634 ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h  687 (840)
T KOG2003|consen  634 AYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH  687 (840)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            555555555555555555555555543333 44444555555555555554433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.82  E-value=1e-07  Score=80.43  Aligned_cols=104  Identities=18%  Similarity=0.066  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH----HHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA----KGYKI  124 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~  124 (227)
                      .....+...|..+...|++++|+..+.+++..+|+++.++..+|.+++..|++++|+..+++++...|..+    ..|+.
T Consensus       112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~  191 (355)
T cd05804         112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWH  191 (355)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence            34456678889999999999999999999999999999999999999999999999999999999987543    35678


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          125 RGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       125 la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      +|.++...|++++|+..|.++....|..
T Consensus       192 la~~~~~~G~~~~A~~~~~~~~~~~~~~  219 (355)
T cd05804         192 LALFYLERGDYEAALAIYDTHIAPSAES  219 (355)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhccccCC
Confidence            9999999999999999999998777743

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.81  E-value=2e-07  Score=81.89  Aligned_cols=134  Identities=19%  Similarity=0.162  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      +.-+.|+..-...+.+.+++.|..+|.++....|+ ...|+--+.+...+++.++|+..++.+++..|++.+.|..+|++
T Consensus       616 nseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi  694 (913)
T KOG0495|consen  616 NSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQI  694 (913)
T ss_pred             CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHH
Confidence            34566777777777788888888888888777664 57777788888888889999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      +..+++.+.|...|...++..|.. ..|..+..+....|..-.|+..+++..-..+
T Consensus       695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP  750 (913)
T KOG0495|consen  695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP  750 (913)
T ss_pred             HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence            999999999999999999999988 8888888888888888888888866654433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.81  E-value=1.7e-07  Score=85.51  Aligned_cols=134  Identities=16%  Similarity=0.075  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------------------------------------AILYAARAG   93 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~~g~   93 (227)
                      .+.++..+|..|...-+...|..+|.+|.++++++                                    ...|..+|.
T Consensus       491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~  570 (1238)
T KOG1127|consen  491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP  570 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence            45567777777777777778888888888777765                                    234445677


Q ss_pred             HHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHH
Q 041967           94 VYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHR  172 (227)
Q Consensus        94 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~  172 (227)
                      .|...+++.+|+.+|+.+++.+|.+...|..+|.+|...|.|..|++.|.++..++|.+ -.....+.+.-..|++.++.
T Consensus       571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal  650 (1238)
T KOG1127|consen  571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL  650 (1238)
T ss_pred             cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence            77777777888888888888888888888888888888888888888888888888877 33345555556678888888


Q ss_pred             HHHHHHHHHHH
Q 041967          173 RKYERLRKERE  183 (227)
Q Consensus       173 ~~~~~~~~~~~  183 (227)
                      ..+........
T Consensus       651 d~l~~ii~~~s  661 (1238)
T KOG1127|consen  651 DALGLIIYAFS  661 (1238)
T ss_pred             HHHHHHHHHHH
Confidence            77766654443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.79  E-value=2.2e-07  Score=81.27  Aligned_cols=134  Identities=23%  Similarity=0.205  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-----
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML--------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP-----  116 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----  116 (227)
                      .+..+...|..|...++|.+|+..|++|+.+        +|..+.++.++|.+|+..|+|.+|..+|++|+.+..     
T Consensus       240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~  319 (508)
T KOG1840|consen  240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA  319 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc
Confidence            3455667999999999999999999999975        344567899999999999999999999999987742     


Q ss_pred             ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCh-H---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          117 ---DSAKGYKIRGMARARLGQWEEAANDLHVASKLD-----YDE-E---IGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       117 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----p~~-~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                         .-...+..++.++..++++++|+..+++++++-     +++ .   ...+++.++...|++.+|..-+++++...+
T Consensus       320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~  398 (508)
T KOG1840|consen  320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR  398 (508)
T ss_pred             ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence               234578889999999999999999999998873     233 2   244899999999999999999988875553

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.78  E-value=5.6e-07  Score=79.38  Aligned_cols=46  Identities=22%  Similarity=0.169  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVY   95 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   95 (227)
                      ....+-.+|..+++.|++++|...|...|..+|++..+|..+..|.
T Consensus        37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen   37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            3455666777777777777777777777766666644444444443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.78  E-value=7.4e-08  Score=78.48  Aligned_cols=131  Identities=16%  Similarity=0.053  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 041967           54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG  133 (227)
Q Consensus        54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  133 (227)
                      +...+.++-..+++++|+++|..+++.+|.+.++..-+|.-|+.-++++-|+.+|++++.+.-.++..+.++|.|....+
T Consensus       293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq  372 (478)
T KOG1129|consen  293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ  372 (478)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence            34444455555555555555555555555555555555555555555555555555555555556667888888888888


Q ss_pred             CHHHHHHHHHHHHhcCC--Ch--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          134 QWEEAANDLHVASKLDY--DE--EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       134 ~~~~A~~~~~~a~~~~p--~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      +++-++.+|++|+..-.  +.  ++|.+++.+....|++.-|.+.|+.+...+..
T Consensus       373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~  427 (478)
T KOG1129|consen  373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ  427 (478)
T ss_pred             chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence            88888999988887743  32  67888888888889988888888777665554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.78  E-value=2e-07  Score=81.63  Aligned_cols=141  Identities=18%  Similarity=0.123  Sum_probs=115.7

Q ss_pred             ccHHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967           43 VTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIML--------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALET  114 (227)
Q Consensus        43 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  114 (227)
                      +....+....++..+|..|..+|+|+.|+..+..++..        .|.-......+|.+|+..++|.+|+..|+.|+.+
T Consensus       191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i  270 (508)
T KOG1840|consen  191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI  270 (508)
T ss_pred             cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34444556677788999999999999999999999998        5655666777999999999999999999999876


Q ss_pred             C-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----h-HH---HHHHHHHHHhhhhHHHHHHHHHH
Q 041967          115 N-----PDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYD-----E-EI---GMALKKVEPNARRIQEHRRKYER  177 (227)
Q Consensus       115 ~-----p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-----~-~~---~~~l~~~~~~~~~~~~a~~~~~~  177 (227)
                      .     +++   ..++.++|.+|...|++++|..++++|+.+...     . .+   ...++.+....++++++...+++
T Consensus       271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~  350 (508)
T KOG1840|consen  271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK  350 (508)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            3     344   468999999999999999999999999988432     1 23   34777778888999999999887


Q ss_pred             HHHHHH
Q 041967          178 LRKERE  183 (227)
Q Consensus       178 ~~~~~~  183 (227)
                      ..+.-.
T Consensus       351 al~i~~  356 (508)
T KOG1840|consen  351 ALKIYL  356 (508)
T ss_pred             HHHHHH
Confidence            776654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.76  E-value=3.4e-08  Score=64.83  Aligned_cols=66  Identities=20%  Similarity=0.161  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIML---NPT----SAILYAARAGVYVKLNKPNAAIRDAYVALET  114 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  114 (227)
                      ..+..+..+|.+++..|+|++|+.+|++++.+   .++    .+.++.++|.++...|++++|+.++++++.+
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45566667777777777777777777776653   111    2445666666666666666666666666654

...

>PRK11906 transcriptional regulator; Provisional

Probab=98.75  E-value=4.2e-07  Score=77.66  Aligned_cols=127  Identities=14%  Similarity=0.009  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHH
Q 041967           51 ANMTKLKAVDLISE---------GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKG  121 (227)
Q Consensus        51 ~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~  121 (227)
                      +.+|..++.+++..         .+-.+|.+...+|++++|.++.++..+|.+....++++.|+..|++|+.++|+...+
T Consensus       295 a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~  374 (458)
T PRK11906        295 TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL  374 (458)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH
Confidence            44555555555543         346789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH-HH-HHhhhhHHHHHHHHHH
Q 041967          122 YKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALK-KV-EPNARRIQEHRRKYER  177 (227)
Q Consensus       122 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~-~~-~~~~~~~~~a~~~~~~  177 (227)
                      |+..|.+++-.|+.++|..+++++++++|.-.....+. .+ .....-++++..-|-+
T Consensus       375 ~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (458)
T PRK11906        375 YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK  432 (458)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence            99999999999999999999999999999863322221 11 2233345666666643

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.74  E-value=1.5e-07  Score=82.43  Aligned_cols=136  Identities=13%  Similarity=0.073  Sum_probs=120.9

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      .+...+.+-.+|..+...|+-++|..+...++..++.+..+|-.+|.++...++|++|+.+|..|+.++|+|...|.-++
T Consensus        37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDls  116 (700)
T KOG1156|consen   37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLS  116 (700)
T ss_pred             CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            34567888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      .+...+++++.....-.+.++..|.. ..|........-.|++..+....+...+..
T Consensus       117 lLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  117 LLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999998 667777777777888888887777766655

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.74  E-value=7.7e-07  Score=75.87  Aligned_cols=113  Identities=19%  Similarity=0.146  Sum_probs=100.8

Q ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 041967           63 SEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDL  142 (227)
Q Consensus        63 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  142 (227)
                      ..+.++.|+..+++....+|.   ....++.++...++..+|++.+.+++..+|.+...+...+..+...++++.|+...
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iA  257 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIA  257 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            356899999999998888875   45568889989999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967          143 HVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERL  178 (227)
Q Consensus       143 ~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~  178 (227)
                      ++++.+.|.+ ..|..|+.++...|+++.|...++.+
T Consensus       258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  258 KKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            9999999998 89999999999999999998777544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.9e-07  Score=78.09  Aligned_cols=100  Identities=14%  Similarity=0.072  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      ...+.+++.++++.++|..|+....++|..+|.+.-++|.+|.++..+|+|+.|+.+|+++++++|.|..+...+..|-.
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999888888877


Q ss_pred             HcCCHHHH-HHHHHHHHhcCC
Q 041967          131 RLGQWEEA-ANDLHVASKLDY  150 (227)
Q Consensus       131 ~~g~~~~A-~~~~~~a~~~~p  150 (227)
                      ....+... .+.|.+.+..-+
T Consensus       337 k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            76666544 667777766554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.71  E-value=4.1e-07  Score=80.04  Aligned_cols=134  Identities=14%  Similarity=0.040  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      +...|+..+....-.+..++|+++++++|+..|+++-.|..+|.++-++++.+.|...|...++..|.....|..++.+-
T Consensus       650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle  729 (913)
T KOG0495|consen  650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE  729 (913)
T ss_pred             cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence            34667788888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ...|+.-.|...+.++.-.+|.+ ..|...-.+..+.|+...|...+.++....+
T Consensus       730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp  784 (913)
T KOG0495|consen  730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECP  784 (913)
T ss_pred             HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999 7788888888999999999888877765554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.69  E-value=2.2e-08  Score=65.83  Aligned_cols=67  Identities=30%  Similarity=0.349  Sum_probs=56.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967           82 PTSAILYAARAGVYVKLNKPNAAIRDAYVALETN----PD---SAKGYKIRGMARARLGQWEEAANDLHVASKL  148 (227)
Q Consensus        82 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  148 (227)
                      |+.+.++.++|.+|..+|++++|+.+|++++.+.    ++   ...+++++|.++..+|++++|+.++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3446789999999999999999999999998662    22   2458899999999999999999999999876

...

>PRK15331 chaperone protein SicA; Provisional

Probab=98.69  E-value=5.1e-07  Score=67.11  Aligned_cols=103  Identities=11%  Similarity=-0.078  Sum_probs=94.4

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 041967           79 MLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMA  157 (227)
Q Consensus        79 ~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~  157 (227)
                      .+.++.....+..|.-++..|++++|...|+-+...+|.+++.|+.||.|+-.+++|+.|+..|..+..+++++ ...-.
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~  110 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF  110 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence            34555677889999999999999999999999999999999999999999999999999999999999999988 55679


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          158 LKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       158 l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      .+.++..+|+...|+..|......
T Consensus       111 agqC~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        111 TGQCQLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhC
Confidence            999999999999999999887764

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.68  E-value=2.8e-06  Score=67.34  Aligned_cols=134  Identities=13%  Similarity=0.073  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH---HHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA---ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK---GYK  123 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  123 (227)
                      .+..|+..|...++.|+|.+|+..|+......|.++   .+...++.++++.++++.|+..+++-+.+.|.++.   +++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            468999999999999999999999999999988864   58889999999999999999999999999998864   777


Q ss_pred             HHHHHHHHcCC--------HHHHHHHHHHHHhcCCChH----HH--------------HHHHHHHHhhhhHHHHHHHHHH
Q 041967          124 IRGMARARLGQ--------WEEAANDLHVASKLDYDEE----IG--------------MALKKVEPNARRIQEHRRKYER  177 (227)
Q Consensus       124 ~la~~~~~~g~--------~~~A~~~~~~a~~~~p~~~----~~--------------~~l~~~~~~~~~~~~a~~~~~~  177 (227)
                      ..|.+++..=+        ...|...|+..+...|+..    +.              ..+++.+...|.+..+...++.
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~  192 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE  192 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            78888765442        4578999999999999841    11              2445556666666667777766


Q ss_pred             HHHHHH
Q 041967          178 LRKERE  183 (227)
Q Consensus       178 ~~~~~~  183 (227)
                      +.+.-+
T Consensus       193 v~e~y~  198 (254)
T COG4105         193 VLENYP  198 (254)
T ss_pred             HHhccc
Confidence            665544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.67  E-value=3.9e-07  Score=77.66  Aligned_cols=100  Identities=24%  Similarity=0.240  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      ++....++.+++..++..+|++.+.+++..+|.+...+...+..++..++++.|+..+++++.+.|..-..|+.|+.+|.
T Consensus       200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi  279 (395)
T PF09295_consen  200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYI  279 (395)
T ss_pred             CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCC
Q 041967          131 RLGQWEEAANDLHVASKLDY  150 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a~~~~p  150 (227)
                      .+|+++.|+..+..+.-..+
T Consensus       280 ~~~d~e~ALlaLNs~Pm~~~  299 (395)
T PF09295_consen  280 QLGDFENALLALNSCPMLTY  299 (395)
T ss_pred             hcCCHHHHHHHHhcCcCCCC
Confidence            99999999988886654433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.66  E-value=3e-06  Score=74.85  Aligned_cols=134  Identities=16%  Similarity=0.047  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ...+++-++..+-..|++++|+.++++||...|+.+..|+..|.++-+.|++.+|...++.|-.+|+.+--.-...+..+
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999998887777788999


Q ss_pred             HHcCCHHHHHHHHHHHHhcC--CCh------HHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLD--YDE------EIGM--ALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~--p~~------~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      .+.|++++|...+....+-+  |..      .+|-  ..+..+.+.|++..|.+.|....+...
T Consensus       273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~  336 (517)
T PF12569_consen  273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD  336 (517)
T ss_pred             HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            99999999999999887765  221      1243  567778899999999999977776644

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.64  E-value=1.4e-06  Score=62.02  Aligned_cols=94  Identities=18%  Similarity=0.004  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---h-HHHHHH
Q 041967           86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYD---E-EIGMAL  158 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~-~~~~~l  158 (227)
                      .+.|++|.++-..|+.++|+..|++++......   ..+++.+|.++..+|++++|+..+++++...|+   + .+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578999999999999999999999999986554   569999999999999999999999999999898   5 445577


Q ss_pred             HHHHHhhhhHHHHHHHHHHHH
Q 041967          159 KKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       159 ~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      ..+....|+..++...+-...
T Consensus        82 Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            788889999999998885443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.63  E-value=6e-07  Score=79.46  Aligned_cols=108  Identities=19%  Similarity=0.085  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC
Q 041967           49 DAANMTKLKAVDLISE--------GKLEDAIGQLTEAIML--NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS  118 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  118 (227)
                      +.+.++-.++.++...        .+...+.....+++.+  +|.++.++..+|..+...|++++|...+++++.++| +
T Consensus       374 ~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s  452 (517)
T PRK10153        374 DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-S  452 (517)
T ss_pred             CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C
Confidence            3444555555554443        2345666667776664  777889999999999999999999999999999999 5


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHH
Q 041967          119 AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMA  157 (227)
Q Consensus       119 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~  157 (227)
                      ..+|+.+|.++...|++++|+..|++|+.++|.++.+..
T Consensus       453 ~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~  491 (517)
T PRK10153        453 WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYW  491 (517)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence            789999999999999999999999999999999855443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.62  E-value=1.3e-06  Score=69.76  Aligned_cols=100  Identities=15%  Similarity=0.019  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHHHHH
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE----EIGMALKK  160 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~l~~  160 (227)
                      .|+-|.-+++.|+|..|.+.|..-+...|+.   +.++||||.+++.+|+|++|...|..+++-.|+.    +....++.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7999999999999999999999999999987   4799999999999999999999999999999985    45678899


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHhhHH
Q 041967          161 VEPNARRIQEHRRKYERLRKERELKNF  187 (227)
Q Consensus       161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~  187 (227)
                      +...+|+.++|...++.+.+.-+....
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            999999999999999999988776443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.60  E-value=8.2e-07  Score=78.88  Aligned_cols=130  Identities=18%  Similarity=0.107  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----------------------------HHHHcCCcH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAG----------------------------VYVKLNKPN  102 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~----------------------------~~~~~~~~~  102 (227)
                      .+.|-....+|...|+..+|.....+-++.+| ++..|..+|.                            ..+..++|.
T Consensus       424 lemw~~vi~CY~~lg~~~kaeei~~q~lek~~-d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs  502 (777)
T KOG1128|consen  424 LEMWDPVILCYLLLGQHGKAEEINRQELEKDP-DPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS  502 (777)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHhcCCC-cchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence            45666777888888888888888888887444 4444443332                            234468899


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          103 AAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       103 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      ++..+++..++++|-....||.+|.|..+++++..|..+|..++.++|++ +.|.++...+...++-.++...++++.|-
T Consensus       503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc  582 (777)
T KOG1128|consen  503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC  582 (777)
T ss_pred             HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999 99999999999999988888888777643

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.58  E-value=3.3e-06  Score=65.94  Aligned_cols=120  Identities=18%  Similarity=0.075  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC-----------CcHHHHHHHHHHHHhC
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLN-----------KPNAAIRDAYVALETN  115 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~-----------~~~~A~~~~~~al~~~  115 (227)
                      ...+.+.+|..+++.|+|.+|+..|++.+...|++   +.+++.+|.+++...           ...+|+..|+..+...
T Consensus        41 a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y  120 (203)
T PF13525_consen   41 APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY  120 (203)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC
Confidence            45788999999999999999999999999999986   458999999987653           2458999999999999


Q ss_pred             CCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHhhhhHH
Q 041967          116 PDSAK-----------------GYKIRGMARARLGQWEEAANDLHVASKLDYDEE----IGMALKKVEPNARRIQ  169 (227)
Q Consensus       116 p~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~l~~~~~~~~~~~  169 (227)
                      |+...                 --+..|..|.+.|.+..|+..++.+++..|+..    +...+...+..+|...
T Consensus       121 P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  121 PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence            99742                 234468899999999999999999999999852    2345666666666544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.57  E-value=1.1e-05  Score=64.81  Aligned_cols=127  Identities=14%  Similarity=0.057  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC---------------C---cHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLN---------------K---PNAAIRDA  108 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~---------------~---~~~A~~~~  108 (227)
                      ...+.+.+|..+++.++|++|+..|++.++.+|++   +.+++.+|.++...+               +   ...|+..|
T Consensus        68 a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~  147 (243)
T PRK10866         68 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDF  147 (243)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHH
Confidence            34567999999999999999999999999999986   568999999875554               1   25788999


Q ss_pred             HHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhhhh
Q 041967          109 YVALETNPDSAK-----------------GYKIRGMARARLGQWEEAANDLHVASKLDYDE----EIGMALKKVEPNARR  167 (227)
Q Consensus       109 ~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~l~~~~~~~~~  167 (227)
                      +..+...|+..-                 --+..|..|.+.|.|..|+.-++.++.-.|+.    ++...+...+..+|.
T Consensus       148 ~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~  227 (243)
T PRK10866        148 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL  227 (243)
T ss_pred             HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence            999999998742                 12345778999999999999999999999985    334466677777777


Q ss_pred             HHHHHHHHH
Q 041967          168 IQEHRRKYE  176 (227)
Q Consensus       168 ~~~a~~~~~  176 (227)
                      ..++.....
T Consensus       228 ~~~a~~~~~  236 (243)
T PRK10866        228 NAQADKVAK  236 (243)
T ss_pred             hHHHHHHHH
Confidence            777666543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.53  E-value=9.2e-07  Score=81.89  Aligned_cols=99  Identities=15%  Similarity=0.017  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------------------HHHHHHHHHHHHcCCcHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA-------------------ILYAARAGVYVKLNKPNAAIRDA  108 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------~~~~~~g~~~~~~~~~~~A~~~~  108 (227)
                      ++....++..|..+++.+++.++...  .++..-+.+.                   .+++.+|.||-++|++++|...+
T Consensus        62 P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~y  139 (906)
T PRK14720         62 KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVW  139 (906)
T ss_pred             CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHH
Confidence            35567788889999988888777666  6666555554                   89999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967          109 YVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD  149 (227)
Q Consensus       109 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  149 (227)
                      +++++++|+++.++.++|..|... +.+.|..++.+|+...
T Consensus       140 er~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        140 ERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             HHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 9999999999998874

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.44  E-value=8.8e-05  Score=56.92  Aligned_cols=122  Identities=17%  Similarity=0.175  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-----KGYKIRGM  127 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~  127 (227)
                      .++..+..-+...+-++++.-...           +-.-|.-++..|+|.+|..-|..||.+.|..+     -.|.+.|.
T Consensus        74 eLmae~E~i~~deek~k~~~kad~-----------lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraa  142 (271)
T KOG4234|consen   74 ELMAEIEKIFSDEEKDKAIEKADS-----------LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAA  142 (271)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHH-----------HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHH
Confidence            444444444444344444443333           33367888899999999999999999999765     36788999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELK  185 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  185 (227)
                      ++..++..+.|+..+.+++.++|+. .+....+..+.+..+++++...|+++....+..
T Consensus       143 a~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~  201 (271)
T KOG4234|consen  143 ALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR  201 (271)
T ss_pred             HHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence            9999999999999999999999998 666677888899999999999999998777653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.44  E-value=9.7e-06  Score=66.78  Aligned_cols=134  Identities=17%  Similarity=0.099  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN--KPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      ..+.......++++.++++.|.+.+..+-..+.++..+....+++.+..|  .+..|...|+......+.++..+..++.
T Consensus       130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~  209 (290)
T PF04733_consen  130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV  209 (290)
T ss_dssp             CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            34566667789999999999999999998888776666666666666666  5999999999988888899999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHH
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHR-RKYERLRKERE  183 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~  183 (227)
                      |+..+|++++|...+..++..+|.+ +...++.-+....|+..+.. +.+..+....+
T Consensus       210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p  267 (290)
T PF04733_consen  210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP  267 (290)
T ss_dssp             HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence            9999999999999999999999998 76778878888888874444 44455554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.44  E-value=4.2e-05  Score=56.33  Aligned_cols=99  Identities=21%  Similarity=0.135  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCcHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----------------------AILYAARAGVYVKLNKPNAAIRD  107 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~g~~~~~~~~~~~A~~~  107 (227)
                      ..+.+...|......++...++..+.+++.+....                      ..+...++..+...|++..|+..
T Consensus         5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~   84 (146)
T PF03704_consen    5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL   84 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            45667777888888999999999999999875332                      34556677778889999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967          108 AYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL  148 (227)
Q Consensus       108 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  148 (227)
                      +.+++..+|.+..+|..+-.+|...|++..|+..|.++...
T Consensus        85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998877543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.42  E-value=6.7e-07  Score=51.99  Aligned_cols=42  Identities=26%  Similarity=0.379  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      .++..+|.+|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            455666666666666666666666666666666666666654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.40  E-value=2.8e-06  Score=77.87  Aligned_cols=114  Identities=15%  Similarity=0.073  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR  131 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  131 (227)
                      ..|..+|..++..+++.+|+..|+.++..+|.+..+|..+|.+|...|.+..|+..|.++..++|.+.-+.|..+.+...
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd  642 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD  642 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence            45666999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967          132 LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA  165 (227)
Q Consensus       132 ~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~  165 (227)
                      +|.|.+|+..+...+...... .....++++..+.
T Consensus       643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~  677 (1238)
T KOG1127|consen  643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD  677 (1238)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            999999999999888776554 3333555554443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.35  E-value=3.1e-06  Score=69.61  Aligned_cols=97  Identities=18%  Similarity=0.097  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNAR  166 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~  166 (227)
                      +-..|.-|+++|.|++||.+|.+++..+|.|+..+.++|.+|+++..|..|...+..|+.++..- .+....+.....+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            55689999999999999999999999999999999999999999999999999999999998654 44445566667889


Q ss_pred             hHHHHHHHHHHHHHHHHh
Q 041967          167 RIQEHRRKYERLRKEREL  184 (227)
Q Consensus       167 ~~~~a~~~~~~~~~~~~~  184 (227)
                      ...+|+..++......+.
T Consensus       180 ~~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPK  197 (536)
T ss_pred             hHHHHHHhHHHHHhhCcc
Confidence            999999999888766554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.34  E-value=8e-06  Score=67.08  Aligned_cols=132  Identities=23%  Similarity=0.183  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC--C--
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNP--TS----AILYAARAGVYVKLNKPNAAIRDAYVALETNPD--S--  118 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~--  118 (227)
                      ..+..+...|+.+...++|++|..+|.++....-  .+    +..+...+.++.+. ++..|+.++++++.+.-.  .  
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~  111 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS  111 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence            4567888889999999999999999999987532  11    45677777787666 999999999999987422  2  


Q ss_pred             --HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          119 --AKGYKIRGMARARL-GQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       119 --~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                        ...+..+|.+|... |+++.|+.+|++|..+...+       .....++.+....|++.+|...|++....
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence              35888999999999 99999999999999984332       23457888889999999999999877643

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.31  E-value=6.8e-07  Score=48.88  Aligned_cols=32  Identities=31%  Similarity=0.386  Sum_probs=16.9

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 041967          108 AYVALETNPDSAKGYKIRGMARARLGQWEEAA  139 (227)
Q Consensus       108 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  139 (227)
                      |+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            44555555555555555555555555555543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.30  E-value=9.9e-06  Score=66.73  Aligned_cols=99  Identities=19%  Similarity=0.094  Sum_probs=81.4

Q ss_pred             HHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 041967           57 KAVDLISEG--KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ  134 (227)
Q Consensus        57 ~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  134 (227)
                      .+.+.+..|  .+++|.-.|++.....|.++..+..++.|++.+|+|++|...+.+++..+|.++..+.+++.+...+|+
T Consensus       171 ~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk  250 (290)
T PF04733_consen  171 EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK  250 (290)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence            334444444  699999999998888788999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHHHHHHHhcCCChHHH
Q 041967          135 W-EEAANDLHVASKLDYDEEIG  155 (227)
Q Consensus       135 ~-~~A~~~~~~a~~~~p~~~~~  155 (227)
                      . +.+.+++.+....+|.++..
T Consensus       251 ~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  251 PTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             ChhHHHHHHHHHHHhCCCChHH
Confidence            8 56777888888889987443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.29  E-value=1.2e-06  Score=47.95  Aligned_cols=34  Identities=32%  Similarity=0.408  Sum_probs=31.7

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH
Q 041967           73 QLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIR  106 (227)
Q Consensus        73 ~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~  106 (227)
                      +|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4899999999999999999999999999999863

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.29  E-value=3.9e-05  Score=62.94  Aligned_cols=129  Identities=14%  Similarity=-0.028  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL-NKPNAAIRDAYVALETNPDSAKGYKIRGMARAR  131 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  131 (227)
                      +|....+...+.+..+.|...|.+|+...+....+|...|...++. ++.+.|...|+.+++..|.+...|..+...+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            3445555666666799999999999966666788999999998885 566669999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          132 LGQWEEAANDLHVASKLDYDEE----IGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       132 ~g~~~~A~~~~~~a~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      .|+.+.|...|++++..-|...    +|..........|++.....-.+++...
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999988765    5666666667777766555555554443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.27  E-value=7.8e-05  Score=62.36  Aligned_cols=134  Identities=16%  Similarity=0.144  Sum_probs=114.4

Q ss_pred             ccHHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHH
Q 041967           43 VTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGY  122 (227)
Q Consensus        43 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  122 (227)
                      ++...++.++.-...+..+...|++++|.+....+++..-+ +.....++.  ...+++..=++..++.++..|+++..+
T Consensus       255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~~--l~~~d~~~l~k~~e~~l~~h~~~p~L~  331 (400)
T COG3071         255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIPR--LRPGDPEPLIKAAEKWLKQHPEDPLLL  331 (400)
T ss_pred             ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHhh--cCCCCchHHHHHHHHHHHhCCCChhHH
Confidence            44444456778888899999999999999999999997654 333322332  368999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          123 KIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       123 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      ..+|.++...+.+.+|..+|+.+++..|+...+..++.++...|+..++...++...
T Consensus       332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         332 STLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988876554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=4.7e-05  Score=66.56  Aligned_cols=127  Identities=17%  Similarity=0.158  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGM  127 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~  127 (227)
                      ...++.--+.+..+++|++|+....+.+...|++..++...-.|+.+.+.|+.|+..    |+.++..   ....|..+-
T Consensus        12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~~~~~~~~~~fEKAY   87 (652)
T KOG2376|consen   12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKL----IKKNGALLVINSFFFEKAY   87 (652)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcchhhhcchhhHHHHH
Confidence            356777778889999999999999999999999999999999999999999999944    4444421   122378999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      |.++++..++|++.+.   .+++.+ .....-+.+..+++++.++..-|+.+.+....
T Consensus        88 c~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d  142 (652)
T KOG2376|consen   88 CEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD  142 (652)
T ss_pred             HHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence            9999999999999998   455555 46667788999999999999999999766543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.25  E-value=0.00042  Score=58.09  Aligned_cols=140  Identities=15%  Similarity=0.026  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-CHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD-SAKGYKIRGM  127 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~  127 (227)
                      ..+......|..-+..|+|.+|.....++-+-.+.-..+|..-+.+.-++|+++.+=.++.++-+..++ ...+...++.
T Consensus        82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar  161 (400)
T COG3071          82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR  161 (400)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence            456777888999999999999999999988877776777888888999999999999999999999444 4578889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHH
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELKNFE  188 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  188 (227)
                      ++...|++..|.....+++.+.|.+ .+......++...|+|........++.|..-..+.+
T Consensus       162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e  223 (400)
T COG3071         162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE  223 (400)
T ss_pred             HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH
Confidence            9999999999999999999999999 778888999999999999999988888776554433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.25  E-value=3.4e-06  Score=48.96  Aligned_cols=42  Identities=21%  Similarity=0.142  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAG   93 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~   93 (227)
                      ..++.+|..+...|++++|++.|+++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            578899999999999999999999999999999999998875

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.24  E-value=2.2e-06  Score=46.74  Aligned_cols=30  Identities=27%  Similarity=0.339  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Q 041967           87 LYAARAGVYVKLNKPNAAIRDAYVALETNP  116 (227)
Q Consensus        87 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  116 (227)
                      +|+++|.++..+|++++|+.+|+++++++|
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            344444444444444444444444444444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.18  E-value=0.00014  Score=62.47  Aligned_cols=130  Identities=18%  Similarity=0.074  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ....|...|.-...+++++.|...|++||..+-.+...|...+.+.++.++..-|...+++|+.+=|.--..|+..-.+-
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE  151 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME  151 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            34567788888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      ..+|+...|.+.|.+=+...|+..+|...-....+..+++-++.-|.+.+
T Consensus       152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV  201 (677)
T KOG1915|consen  152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFV  201 (677)
T ss_pred             HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99999999999999999999999999888888888888888888887765

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.16  E-value=6e-06  Score=44.92  Aligned_cols=34  Identities=38%  Similarity=0.423  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          119 AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       119 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      +.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.15  E-value=6.8e-06  Score=44.57  Aligned_cols=29  Identities=28%  Similarity=0.279  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVALETNP  116 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p  116 (227)
                      ++.+|.+++..|++++|+.+|++++.++|
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            34444444444444444444444444444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.14  E-value=3.5e-05  Score=63.32  Aligned_cols=136  Identities=18%  Similarity=0.125  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---
Q 041967           49 DAANMTKLKAVDLISE-GKLEDAIGQLTEAIMLNPT--S----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---  118 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~--~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---  118 (227)
                      ..+..+...|..+... |++++|+.+|++|+++...  .    ..++...|.++...|+|.+|+..|+++....-.+   
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~  191 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL  191 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence            3567889999999998 9999999999999986422  2    3578889999999999999999999998754221   


Q ss_pred             ---H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHHh
Q 041967          119 ---A-KGYKIRGMARARLGQWEEAANDLHVASKLDYDE---EIGMALKKVE-----PNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       119 ---~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                         . ..++..+.|+...|++..|...|++....+|..   .-...+..+.     .....+..+...|..+.+.++-
T Consensus       192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w  269 (282)
T PF14938_consen  192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW  269 (282)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence               2 356778899999999999999999999999863   1122222222     1344456666666666555443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.14  E-value=1.2e-05  Score=69.49  Aligned_cols=105  Identities=24%  Similarity=0.187  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL---NKPNAAIRDAYVALETNPDSAKGYKI  124 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~  124 (227)
                      +..++.++..|+..+..+.+..|+..|.+++...|+....|.+++.++++.   |+.-.|+.++..+++++|...++|++
T Consensus       371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~  450 (758)
T KOG1310|consen  371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR  450 (758)
T ss_pred             hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence            356888999999999999999999999999999999999999999999986   57788999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          125 RGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       125 la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ++.++..++.+.+|+.+...+...+|.+
T Consensus       451 la~aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  451 LARALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence            9999999999999999999888888866

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.14  E-value=0.00015  Score=52.82  Aligned_cols=69  Identities=16%  Similarity=0.034  Sum_probs=64.6

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967           84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus        84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      .+..++..|...+..|+|.+|+..|+.+....|..   ..+.+.+|.+|+..+++..|+..+++.++++|++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h   80 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH   80 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            46789999999999999999999999999999876   4789999999999999999999999999999997

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.10  E-value=0.00038  Score=52.87  Aligned_cols=132  Identities=27%  Similarity=0.241  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHhCC---CCHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAG-VYVKLNKPNAAIRDAYVALETNP---DSAKGYKIRG  126 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~-~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la  126 (227)
                      ...++..|......+++..++..+..++...+.........+. ++...|++..|+..+.+++...|   .....+..++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  174 (291)
T COG0457          95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALG  174 (291)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhh
Confidence            4456666666666666777777777776665555444444444 66667777777777777666555   3445555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCC-h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          127 MARARLGQWEEAANDLHVASKLDYD-E-EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      ..+...+++..|+..+.+++...+. . .....++......+.+..+...+.......
T Consensus       175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  232 (291)
T COG0457         175 ALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD  232 (291)
T ss_pred             hHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence            5566666777777777777777666 3 445555666665555666666665554443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.08  E-value=1.4e-05  Score=67.40  Aligned_cols=133  Identities=17%  Similarity=0.129  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcH
Q 041967           49 DAANMTKLKAVDLISEGK--------------------LEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPN  102 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~--------------------~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~  102 (227)
                      ....+++++|++|..+|+                    ++.|.++|..-|++....      ..++-++|..|+.+|+|+
T Consensus       133 ~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~  212 (639)
T KOG1130|consen  133 LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFD  212 (639)
T ss_pred             hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHH
Confidence            356789999999988875                    456677777666654332      357888899999999999


Q ss_pred             HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--h-----HHHHHHHHHHHhhhhHH
Q 041967          103 AAIRDAYVALETNPDS------AKGYKIRGMARARLGQWEEAANDLHVASKLDYD--E-----EIGMALKKVEPNARRIQ  169 (227)
Q Consensus       103 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~-----~~~~~l~~~~~~~~~~~  169 (227)
                      .||..-+.-+.+-..+      ..++.++|.|+.-+|+++.|+++|++.+.+.-.  +     .....|+..+.-..++.
T Consensus       213 ~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~  292 (639)
T KOG1130|consen  213 QAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQ  292 (639)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHH
Confidence            9998887766654333      358888999999999999999999887655321  1     22346666666666677


Q ss_pred             HHHHHHHHHHHH
Q 041967          170 EHRRKYERLRKE  181 (227)
Q Consensus       170 ~a~~~~~~~~~~  181 (227)
                      .|+..+.+..+.
T Consensus       293 kAI~Yh~rHLaI  304 (639)
T KOG1130|consen  293 KAITYHQRHLAI  304 (639)
T ss_pred             HHHHHHHHHHHH
Confidence            777666555433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=0.00022  Score=62.50  Aligned_cols=127  Identities=20%  Similarity=0.128  Sum_probs=101.4

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-----------------
Q 041967           55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD-----------------  117 (227)
Q Consensus        55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----------------  117 (227)
                      |.++-++++.+..++|+.+++   -.++.+.-+...+|.+++++++|++|+..|+..++.+.+                 
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            789999999999999999998   446666678888999999999999999999998765432                 


Q ss_pred             --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------C--------hHHHHHHHHHHHhhhh
Q 041967          118 --------------SAKGYKIRGMARARLGQWEEAANDLHVASKLDY--------D--------EEIGMALKKVEPNARR  167 (227)
Q Consensus       118 --------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--------~--------~~~~~~l~~~~~~~~~  167 (227)
                                    .-..+|+.|.++...|+|.+|++.+++++++.-        .        +.+...+.-++...|+
T Consensus       160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq  239 (652)
T KOG2376|consen  160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ  239 (652)
T ss_pred             hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence                          224788999999999999999999999944421        1        1224477777888899


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 041967          168 IQEHRRKYERLRKEREL  184 (227)
Q Consensus       168 ~~~a~~~~~~~~~~~~~  184 (227)
                      ..++..-|....+....
T Consensus       240 t~ea~~iy~~~i~~~~~  256 (652)
T KOG2376|consen  240 TAEASSIYVDIIKRNPA  256 (652)
T ss_pred             hHHHHHHHHHHHHhcCC
Confidence            99999888777766654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.06  E-value=1.5e-05  Score=43.21  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS   84 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   84 (227)
                      ++.++.+|..++..|+|++|+.+|++++.++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=0.00017  Score=57.64  Aligned_cols=139  Identities=6%  Similarity=-0.013  Sum_probs=113.1

Q ss_pred             HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC------CCC
Q 041967           46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLN-PTSAILYAARAGVYVKLNKPNAAIRDAYVALETN------PDS  118 (227)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~  118 (227)
                      ..+......+....++...|.|.-.+..|.+.++.+ |..+.....+|.+.++.|+.+.|..+|+.+-+.+      ..+
T Consensus       172 W~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~  251 (366)
T KOG2796|consen  172 WRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK  251 (366)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh
Confidence            344555677888899999999999999999999988 6688889999999999999999999999654432      223


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          119 AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIG-MALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       119 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ..+..+.+.++.-.++|..|...|.+++..+|.+.+. .+-+-+....|+..+|.+.++.+....+.
T Consensus       252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            4577778888889999999999999999999998554 46666777889999999998888766654

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.05  E-value=0.00051  Score=65.91  Aligned_cols=126  Identities=11%  Similarity=0.057  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIML--NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN-PDSAKGYKIRGMAR  129 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  129 (227)
                      .|......+.+.|++++|+..|.+....  .|+ ...|..+...+.+.|++++|.+.+...++.. +.+...|..+..+|
T Consensus       616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay  694 (1060)
T PLN03218        616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC  694 (1060)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            3344444444555555555555554443  232 3344444455555555555555555554433 22344555555555


Q ss_pred             HHcCCHHHHHHHHHHHHh--cCCChHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASK--LDYDEEIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      .+.|++++|...|.....  +.|+...|..+-..+.+.|++++|...+..+.
T Consensus       695 ~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            555555555555555433  23333444445455555555555555554443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.04  E-value=0.00021  Score=51.12  Aligned_cols=92  Identities=22%  Similarity=0.129  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-H----HHHHHHHHH
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-E----IGMALKKVE  162 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~----~~~~l~~~~  162 (227)
                      +-..|......|+.+.|++.|.+++.+-|.++.+|.+++.++.-+|+.++|+..+.+++.+..+. .    .....+-++
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            34467888889999999999999999999999999999999999999999999999999996553 2    233556677


Q ss_pred             HhhhhHHHHHHHHHHHH
Q 041967          163 PNARRIQEHRRKYERLR  179 (227)
Q Consensus       163 ~~~~~~~~a~~~~~~~~  179 (227)
                      ...|+.+.++..|....
T Consensus       126 Rl~g~dd~AR~DFe~AA  142 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAA  142 (175)
T ss_pred             HHhCchHHHHHhHHHHH
Confidence            78888899998886654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.03  E-value=0.0002  Score=54.00  Aligned_cols=105  Identities=17%  Similarity=0.139  Sum_probs=73.5

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh---
Q 041967          101 PNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ----------WEEAANDLHVASKLDYDE-EIGMALKKVEPNAR---  166 (227)
Q Consensus       101 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~---  166 (227)
                      |+.|.+.++.....+|.+...+++.|.++..+.+          +++|+.-|+.|+.++|+. ++...++..+...+   
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            6889999999999999999999999999888754          567899999999999997 66555555553333   


Q ss_pred             --------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHhhh
Q 041967          167 --------RIQEHRRKYERLRKERELKNFERERQRKQAGADREALSGL  206 (227)
Q Consensus       167 --------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  206 (227)
                              .++.|..+|++++..++..... .+..+...+.|++..-+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y-~ksLe~~~kap~lh~e~  133 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELY-RKSLEMAAKAPELHMEI  133 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHH-HHHHHHHHTHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHhhHHHHHHH
Confidence                    3667778888888888875555 44444445556554433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.02  E-value=0.00058  Score=65.55  Aligned_cols=55  Identities=15%  Similarity=0.095  Sum_probs=20.8

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 041967           91 RAGVYVKLNKPNAAIRDAYVALETN-PDSAKGYKIRGMARARLGQWEEAANDLHVA  145 (227)
Q Consensus        91 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  145 (227)
                      +..+|.+.|++++|...|+...+.+ +.+...|..+...|.+.|++++|...|...
T Consensus       585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM  640 (1060)
T PLN03218        585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM  640 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3333334444444444444333332 122233333333333344444444333333

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.01  E-value=0.0008  Score=51.02  Aligned_cols=124  Identities=26%  Similarity=0.257  Sum_probs=103.7

Q ss_pred             HHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Q 041967           60 DLISEGKLEDAIGQLTEAIMLNP---TSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD-SAKGYKIRGMARARLGQW  135 (227)
Q Consensus        60 ~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~  135 (227)
                      .+...|+++.|+..|.+++...|   .....+..++..+...+++..++..+..++...+. ....+..++.++...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            88999999999999999999777   35667777788788899999999999999999999 799999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          136 EEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       136 ~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ..|...+..++...|.. .....+.......+.+..+...+.+.....+
T Consensus       219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            99999999999999984 4455555555555667777777766655444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.01  E-value=0.00018  Score=66.51  Aligned_cols=126  Identities=14%  Similarity=0.024  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CCCHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIML--NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN-PDSAKGYKIRGM  127 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~  127 (227)
                      ...|..+...+.+.|++++|+.+|.+....  .| +...|..+..++.+.|.++.|.+.+..+++.. +.+...+..+..
T Consensus       290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~  368 (697)
T PLN03081        290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD  368 (697)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence            456777888888888888888888887653  33 34556666666777777777777777666654 334455555666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      .|.+.|++++|...|.+..+  |+-..|..+...+.+.|+.++|..-++++.
T Consensus       369 ~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~  418 (697)
T PLN03081        369 LYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMI  418 (697)
T ss_pred             HHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            66666666666666655432  222445555555555566666655555544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=8.9e-05  Score=60.22  Aligned_cols=124  Identities=17%  Similarity=0.105  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH------------------
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE------------------  113 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------  113 (227)
                      ..+..+|-+|+..++|..|-.+|.+.-...|....+.+..+..+++.+.+..|+.+......                  
T Consensus        45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs  124 (459)
T KOG4340|consen   45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYS  124 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence            34555566666666666666666665555565555555555555555555555444332211                  


Q ss_pred             ------------hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHH
Q 041967          114 ------------TNP--DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKY  175 (227)
Q Consensus       114 ------------~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~  175 (227)
                                  .-|  +.....++.|.++++-|+|+.|++-|+.+++...-+ .+..++.-...+.+++..|....
T Consensus       125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~i  201 (459)
T KOG4340|consen  125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHI  201 (459)
T ss_pred             cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHH
Confidence                        012  223355556666666666666666666666665554 44445666666666666555554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=0.0002  Score=59.50  Aligned_cols=59  Identities=19%  Similarity=-0.012  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYV  110 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~  110 (227)
                      ..-..+|.++|..|+|++|+..|..+...+.-.+..+.+++.|++..|.|.+|.+...+
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k  116 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK  116 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence            44556788889999999999999888775554567778888888888877776665444

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.88  E-value=0.00084  Score=61.52  Aligned_cols=122  Identities=16%  Similarity=0.146  Sum_probs=89.4

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 041967           59 VDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEA  138 (227)
Q Consensus        59 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  138 (227)
                      ...+..++|.+|+....+.++..|+...+....|..+.++|..++|..+++..-...+++...+..+-.||..+|++++|
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence            44566788888888888888888888888888888888888888888777777777777777888888888888888888


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          139 ANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       139 ~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                      ...|+++...+|.......+=..+.+-+.+.+-++.--++.|
T Consensus        97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK  138 (932)
T KOG2053|consen   97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK  138 (932)
T ss_pred             HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888843333333334444444443333333333

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.86  E-value=3.9e-05  Score=59.52  Aligned_cols=96  Identities=18%  Similarity=0.135  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 041967           85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEP  163 (227)
Q Consensus        85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~  163 (227)
                      +..++.+|..|-..|-..-|..+|.+++.++|+.+.++..+|.-+...|+|+.|...|...++++|.. -...+.+....
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            45678889999889999999999999999999999999999999999999999999999999999997 44445555555


Q ss_pred             hhhhHHHHHHHHHHHHH
Q 041967          164 NARRIQEHRRKYERLRK  180 (227)
Q Consensus       164 ~~~~~~~a~~~~~~~~~  180 (227)
                      .-|++.-|...+.+...
T Consensus       145 Y~gR~~LAq~d~~~fYQ  161 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQ  161 (297)
T ss_pred             ecCchHhhHHHHHHHHh
Confidence            55666666666555443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.86  E-value=6.1e-05  Score=63.57  Aligned_cols=132  Identities=9%  Similarity=-0.056  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHH----hCCCCH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALE----TNPDSA  119 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~  119 (227)
                      +..++-++|++|+-.|+|++|+..-+.-|.+....      -.++.|+|.||.-.|+|+-|+++|...+.    +.....
T Consensus       194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v  273 (639)
T KOG1130|consen  194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV  273 (639)
T ss_pred             hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence            34567778999999999999999988877764332      46899999999999999999999998654    333333


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          120 --KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       120 --~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                        ..-|.+|.+|.-+.++..|+.++++-+.+.-.-       .+...|+..+..+|+.+.|..........
T Consensus       274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence              456789999999999999999999988775331       22346666677777777777766555433

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.00042  Score=57.61  Aligned_cols=87  Identities=21%  Similarity=0.132  Sum_probs=74.8

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 041967           59 VDLISEGKLEDAIGQLTEAIMLNPTSA-ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEE  137 (227)
Q Consensus        59 ~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  137 (227)
                      ..++.+.||..|+.+++-.+..+.... ..-..+|.|+++.|+|++|+..|..+...+..+.+.+.++|.|++-+|.|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            556788999999999998887654433 5666699999999999999999999998877788999999999999999999


Q ss_pred             HHHHHHHH
Q 041967          138 AANDLHVA  145 (227)
Q Consensus       138 A~~~~~~a  145 (227)
                      |...-.+|
T Consensus       110 A~~~~~ka  117 (557)
T KOG3785|consen  110 AKSIAEKA  117 (557)
T ss_pred             HHHHHhhC
Confidence            98876655

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=7.2e-05  Score=58.76  Aligned_cols=90  Identities=20%  Similarity=0.201  Sum_probs=80.3

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhH
Q 041967           90 ARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRI  168 (227)
Q Consensus        90 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~  168 (227)
                      .-|..++....|..|+.+|.++|.++|..+.+|.+.+.|+..+.+++.+...+.+++++.|+. .....++........+
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            346677777889999999999999999999999999999999999999999999999999987 5566888888888889


Q ss_pred             HHHHHHHHHHH
Q 041967          169 QEHRRKYERLR  179 (227)
Q Consensus       169 ~~a~~~~~~~~  179 (227)
                      .++...+.+..
T Consensus        95 ~eaI~~Lqra~  105 (284)
T KOG4642|consen   95 DEAIKVLQRAY  105 (284)
T ss_pred             cHHHHHHHHHH
Confidence            99988887663

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.83  E-value=0.00054  Score=63.30  Aligned_cols=128  Identities=11%  Similarity=0.003  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC---C----------
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIML--NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN---P----------  116 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p----------  116 (227)
                      ..|..+...|.+.|++++|+..|++.+..  .|+ ...+..+..++.+.|..++|...|+...+..   |          
T Consensus       392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~  470 (697)
T PLN03081        392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE  470 (697)
T ss_pred             eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence            44555556666666666666666665542  232 2233333344444444444444444443321   1          


Q ss_pred             ---------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHH
Q 041967          117 ---------------------DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRK  174 (227)
Q Consensus       117 ---------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~  174 (227)
                                           .+...|..+...+...|+++.|...+++++.+.|.+ .....+..++...|++++|..-
T Consensus       471 ~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v  550 (697)
T PLN03081        471 LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV  550 (697)
T ss_pred             HHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence                                 123346666666667777777777777777777776 5566677777777888877777


Q ss_pred             HHHHHH
Q 041967          175 YERLRK  180 (227)
Q Consensus       175 ~~~~~~  180 (227)
                      ++.+.+
T Consensus       551 ~~~m~~  556 (697)
T PLN03081        551 VETLKR  556 (697)
T ss_pred             HHHHHH
Confidence            766553

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=0.00068  Score=56.02  Aligned_cols=127  Identities=13%  Similarity=0.035  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-CCCCH---HHHHHHHHH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET-NPDSA---KGYKIRGMA  128 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~---~~~~~la~~  128 (227)
                      ..-..+...+.+|++.+|-...++.|+-.|++..++..--.+++.+|+.......+++++-. +|+-|   -+.-.++.+
T Consensus       105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg  184 (491)
T KOG2610|consen  105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG  184 (491)
T ss_pred             hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence            34445667888999999999999999999999988888888899999999999999999987 66664   444557888


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLDYDEE-IGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      +...|-|++|.+.-.++++++|.+. +......+..-.++++++++.+.+..
T Consensus       185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te  236 (491)
T KOG2610|consen  185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE  236 (491)
T ss_pred             HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence            9999999999999999999999883 34577788888888888888776654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.0039  Score=50.72  Aligned_cols=132  Identities=17%  Similarity=0.089  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-AKGYKIRGMAR  129 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~  129 (227)
                      .+.-+..+...+..|++.+|...|..++...|.+..+...++.||...|+.+.|...+...=....+. .......-..+
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll  213 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL  213 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence            34567778899999999999999999999999999999999999999999999877765532221111 11111111222


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      .+.....+ ...+++.+..+|+| .....++..+...|+.++|...+-.+.+.+.
T Consensus       214 ~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         214 EQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             HHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            23222222 23356667778877 7777788888888888888887766655533

>PLN03077 Protein ECB2; Provisional

Probab=97.72  E-value=0.002  Score=61.03  Aligned_cols=84  Identities=12%  Similarity=0.075  Sum_probs=54.9

Q ss_pred             HHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhhhhHHH
Q 041967           93 GVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL--DYDEEIGMALKKVEPNARRIQE  170 (227)
Q Consensus        93 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~l~~~~~~~~~~~~  170 (227)
                      ..|.+.|+.++|...|+..    +.+...|..+...|...|+.++|+..|++....  .|+......+-..+.+.|.+++
T Consensus       532 ~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e  607 (857)
T PLN03077        532 DLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ  607 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence            4455556666666655553    445666777777788888888888888877663  4554444444455667777778


Q ss_pred             HHHHHHHHHH
Q 041967          171 HRRKYERLRK  180 (227)
Q Consensus       171 a~~~~~~~~~  180 (227)
                      +...|+.+.+
T Consensus       608 a~~~f~~M~~  617 (857)
T PLN03077        608 GLEYFHSMEE  617 (857)
T ss_pred             HHHHHHHHHH
Confidence            7777776663

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.0013  Score=52.07  Aligned_cols=102  Identities=8%  Similarity=-0.028  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041967           85 AILYAARAGVYVKLNKPNAAIRDAYVALET--------NPDS----------AKGYKIRGMARARLGQWEEAANDLHVAS  146 (227)
Q Consensus        85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a~  146 (227)
                      ..++...|.-+++.|+|.+|...|..||..        .|..          ...+.++..|+...|+|-+++.++...+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            457788999999999999999999988643        3433          3478899999999999999999999999


Q ss_pred             hcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Q 041967          147 KLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELKN  186 (227)
Q Consensus       147 ~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  186 (227)
                      ...|+| .+.-.-++......+..+|+..+.+.....+...
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla  298 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA  298 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence            999999 5666667777777888899999988887776543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.69  E-value=8.4e-05  Score=40.20  Aligned_cols=27  Identities=26%  Similarity=0.206  Sum_probs=10.2

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHhC
Q 041967           89 AARAGVYVKLNKPNAAIRDAYVALETN  115 (227)
Q Consensus        89 ~~~g~~~~~~~~~~~A~~~~~~al~~~  115 (227)
                      +.+|.+|..+|++++|+..|+++++++
T Consensus         5 ~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    5 YNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            333333333333333333333333333

...

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.67  E-value=0.0012  Score=57.29  Aligned_cols=121  Identities=16%  Similarity=0.036  Sum_probs=90.8

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC------------------
Q 041967           56 LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD------------------  117 (227)
Q Consensus        56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------------  117 (227)
                      ..-....+..+++.-++...+||+++|+++.+|..++.-.  .....+|...++++++....                  
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~  250 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW  250 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence            4445667889999999999999999999999998887532  23345666666666553210                  


Q ss_pred             -----C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967          118 -----S--AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEHRRKYERL  178 (227)
Q Consensus       118 -----~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~  178 (227)
                           +  ..+..++|.|..++|..++|++.+...++.+|..   .+..+|...+...+.+.++..-+.+.
T Consensus       251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence                 1  2255678999999999999999999999988863   45667888887777777777666554

The molecular function of this protein is uncertain.

>PLN03077 Protein ECB2; Provisional

Probab=97.67  E-value=0.0016  Score=61.60  Aligned_cols=120  Identities=14%  Similarity=0.065  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIM--LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD--SAKGYKIRG  126 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la  126 (227)
                      ...|......+.+.|+.++|+..|++...  ..|+... +..+-..+.+.|.+++|...|+......+-  +...|..+.
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv  632 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV  632 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence            45777888888888888888888888776  3465443 444445566778888888888877744322  335666777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHH
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHR  172 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~  172 (227)
                      .++.+.|++++|...+++. .+.|+..+|..+-..+...++.+.+.
T Consensus       633 ~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e  677 (857)
T PLN03077        633 DLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGE  677 (857)
T ss_pred             HHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHH
Confidence            7777777777777766654 24444444443333333333333333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.00012  Score=59.53  Aligned_cols=94  Identities=17%  Similarity=0.228  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh----CCCC------
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET----NPDS------  118 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~------  118 (227)
                      +.+....+.|+..++.|+|+.|++.|+.|+......+-.-++++.|+++.+++..|+.....++..    .|..      
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~t  221 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTT  221 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence            357888999999999999999999999999999999999999999999999999999998877654    3321      


Q ss_pred             -------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 041967          119 -------------------AKGYKIRGMARARLGQWEEAANDL  142 (227)
Q Consensus       119 -------------------~~~~~~la~~~~~~g~~~~A~~~~  142 (227)
                                         ..++...+-++++.++++.|...+
T Consensus       222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence                               125666778899999988887654

>PRK10941 hypothetical protein; Provisional

Probab=97.64  E-value=0.0013  Score=53.58  Aligned_cols=67  Identities=18%  Similarity=0.184  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI  154 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~  154 (227)
                      +.++=.+|.+.++++.|+.+.+.++.+.|+++.-+.-+|.+|.++|.+..|...++..+...|+++.
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~  250 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI  250 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence            3344445555555555555555555555555555555555555555555555555555555555533

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.63  E-value=0.0021  Score=61.68  Aligned_cols=125  Identities=14%  Similarity=-0.001  Sum_probs=106.3

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc
Q 041967           55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD--SAKGYKIRGMARARL  132 (227)
Q Consensus        55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~  132 (227)
                      ..+...|-+.+.+++|.++|+..++........|..+|..++...+-++|...+.+|++.-|.  +....-..|.+-+..
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence            334555666778899999999999888777889999999999999999999999999999888  667888889999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          133 GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       133 g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      |+.+.+...|+-.+.-.|.- +.|.-+.......++....+.-|++..
T Consensus      1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred             CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            99999999999999999987 888888788788888888888877665

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.62  E-value=0.00015  Score=62.47  Aligned_cols=115  Identities=17%  Similarity=0.042  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-h----
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEA-IMLNPT--------SAILYAARAGVYVKLNKPNAAIRDAYVALE-T----  114 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~----  114 (227)
                      +.+..++.+++.++..|+|.+|.+.+... +...|.        .-.+|.|+|.++++++.|..++..|.+|++ .    
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            34677888999999999999999987652 222232        234678999999999999999999999996 1    


Q ss_pred             ----CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 041967          115 ----NP---------DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEP  163 (227)
Q Consensus       115 ----~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~  163 (227)
                          .|         ..-...|+.|..|...|++..|.++|.+++.+...+ ..|..+++++.
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence                11         123589999999999999999999999999999888 88988888774

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.61  E-value=0.0035  Score=54.15  Aligned_cols=130  Identities=18%  Similarity=0.122  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..|...|...+++.+...|...+-.||-.+|.+-. .-.......++++++.+...|++-|...|.+..+|...|.+-
T Consensus       403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE  481 (677)
T KOG1915|consen  403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE  481 (677)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence            3455666667777777777777777777777776433 223345556677777888888888888888877888888888


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                      ..+|+.+.|...|.-|+....-+   -.|...-......|+++.++.-|+++..
T Consensus       482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~  535 (677)
T KOG1915|consen  482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD  535 (677)
T ss_pred             HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence            88888887777777777664333   2244444444556666666666666553

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.60  E-value=0.00013  Score=39.46  Aligned_cols=33  Identities=30%  Similarity=0.400  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      .+|+.+|.++..+|+++.|..+|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            579999999999999999999999999999853

...

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.60  E-value=0.0023  Score=48.98  Aligned_cols=96  Identities=22%  Similarity=0.138  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 041967           54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-AKGYKIRGMAR  129 (227)
Q Consensus        54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~  129 (227)
                      ....+..++..+++++|+..++.++....+.   +.+-.++|.+.+..|.+++|+..+.....  +.+ +..--..|.++
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDil  169 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDIL  169 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHH
Confidence            3445555555555555555555555433221   23444555555555555555555443221  111 11233345555


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC
Q 041967          130 ARLGQWEEAANDLHVASKLDYD  151 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~  151 (227)
                      ...|+-.+|...|.+++..+++
T Consensus       170 l~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         170 LAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HHcCchHHHHHHHHHHHHccCC
Confidence            5555555555555555555533

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.60  E-value=0.002  Score=56.71  Aligned_cols=105  Identities=19%  Similarity=0.053  Sum_probs=85.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 041967           64 EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA----KGYKIRGMARARLGQWEEAA  139 (227)
Q Consensus        64 ~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~  139 (227)
                      ..+...|.+.+.......|+++..++..|+.+...|+.++|+..|++++.......    -.++.+|.++..++++++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            45678899999999999999999999999999999999999999999886444332    37888999999999999999


Q ss_pred             HHHHHHHhcCCCh-HHHH-HHHHHHHhhhhH
Q 041967          140 NDLHVASKLDYDE-EIGM-ALKKVEPNARRI  168 (227)
Q Consensus       140 ~~~~~a~~~~p~~-~~~~-~l~~~~~~~~~~  168 (227)
                      .+|.+..+.+.-. .... ..+.++...++.
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            9999999877655 3333 445555566666

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0021  Score=53.02  Aligned_cols=89  Identities=24%  Similarity=0.194  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 041967           85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS----AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALK  159 (227)
Q Consensus        85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~  159 (227)
                      +.-+-.-|.-|++.++|..|+..|..+|+..-.+    ...|.++|-|...+|+|..|+..+.+++.++|++ .....-+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            3456677999999999999999999999987554    4578999999999999999999999999999998 4333334


Q ss_pred             HHHHhhhhHHHHHH
Q 041967          160 KVEPNARRIQEHRR  173 (227)
Q Consensus       160 ~~~~~~~~~~~a~~  173 (227)
                      .+...+..+.++..
T Consensus       161 kc~~eLe~~~~a~n  174 (390)
T KOG0551|consen  161 KCLLELERFAEAVN  174 (390)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44455555333333

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.60  E-value=0.013  Score=43.58  Aligned_cols=112  Identities=13%  Similarity=-0.026  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ....+.....+.+..++.+++..++...--+.|..+..-..-|..+...|++.+|+..++.+..-.|.++.+--.++.|+
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            45678888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDEEIGMALKKVE  162 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~  162 (227)
                      ..+|+..-= .+-..++...++..+...+..+.
T Consensus        89 ~~~~D~~Wr-~~A~evle~~~d~~a~~Lv~~Ll  120 (160)
T PF09613_consen   89 YALGDPSWR-RYADEVLESGADPDARALVRALL  120 (160)
T ss_pred             HHcCChHHH-HHHHHHHhcCCChHHHHHHHHHH
Confidence            999998642 23344666665544444444433

>PRK10941 hypothetical protein; Provisional

Probab=97.56  E-value=0.0014  Score=53.25  Aligned_cols=78  Identities=18%  Similarity=0.250  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ...+.++=..+...++|+.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|+.+++..+...|+.+.+-.....+
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            456677788899999999999999999999999999999999999999999999999999999999999876665544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.55  E-value=0.0021  Score=51.55  Aligned_cols=104  Identities=14%  Similarity=0.103  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIM----LN--PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGY  122 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  122 (227)
                      ..+.-...+|...++.||-+.|..+|+..-+    ++  ........+.+.+|.-.++|..|...|.+++..+|.++-+.
T Consensus       210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~  289 (366)
T KOG2796|consen  210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN  289 (366)
T ss_pred             ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence            3456778899999999999999999995433    22  22356777888899999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          123 KIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       123 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      .+.|.|+..+|+..+|++.+..++.+.|..
T Consensus       290 NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  290 NNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            999999999999999999999999999985

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.54  E-value=0.0074  Score=46.09  Aligned_cols=126  Identities=13%  Similarity=0.052  Sum_probs=105.4

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCH
Q 041967           57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE-TNPDSAKGYKIRGMARARLGQW  135 (227)
Q Consensus        57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~  135 (227)
                      .+....+.=|.+..+....+.++..|+.. -.+.+|......|++.+|...|++++. +..+++..+..++.+.+..+++
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~  140 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF  140 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence            34444555688888888888889888754 466799999999999999999999875 5678889999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          136 EEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       136 ~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ..|...+++..+.+|..   +....++.++...|...++...++.....-+
T Consensus       141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp  191 (251)
T COG4700         141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP  191 (251)
T ss_pred             HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence            99999999999999875   3456888999999999989888877765544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.49  E-value=0.0072  Score=57.45  Aligned_cols=128  Identities=13%  Similarity=-0.033  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC------HH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS------AK  120 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~  120 (227)
                      ......|..++..|++++|...+.+++...+..     ..++..+|.++...|+++.|...+++++......      ..
T Consensus       453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~  532 (903)
T PRK04841        453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW  532 (903)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence            344456777777888888888888877744332     1345667777777888888888887777653321      13


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------h-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          121 GYKIRGMARARLGQWEEAANDLHVASKLDYD--------E-EIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       121 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--------~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      ++..+|.++...|++..|...+.+++.+...        . .....++.+....|++.++...+....
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  600 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL  600 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence            5566777777888888888777777765211        1 112345556666677777766665543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.48  E-value=0.0073  Score=57.40  Aligned_cols=130  Identities=13%  Similarity=0.077  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-------
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPD-------  117 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------  117 (227)
                      ...+...|..+...|++++|...+.+++......      ..++.++|.+++..|++..|...+++++.+-..       
T Consensus       491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  570 (903)
T PRK04841        491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP  570 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            3456778899999999999999999999754321      346778899999999999999999998876221       


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----h--HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          118 -SAKGYKIRGMARARLGQWEEAANDLHVASKLDYD----E--EIGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       118 -~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                       ....+..+|.++...|++++|...+.+++.+...    .  .....++.+....|++.++...+.....
T Consensus       571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~  640 (903)
T PRK04841        571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN  640 (903)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             1234567899999999999999999999876332    1  2233577788889999999888866644

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.48  E-value=0.0036  Score=51.36  Aligned_cols=103  Identities=16%  Similarity=0.049  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH---HHHHHH
Q 041967           50 AANMTKLKAVDLIS-EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA---KGYKIR  125 (227)
Q Consensus        50 ~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l  125 (227)
                      ..+.|...|...+. .++...|...|+.+++..|.+..+|......+...++.+.|...|++++..-|...   ..|-.+
T Consensus        34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~  113 (280)
T PF05843_consen   34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKF  113 (280)
T ss_dssp             -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            34678888888777 67777799999999999999999999999999999999999999999998876655   578888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          126 GMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       126 a~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ...-...|+.+......+++....|.+
T Consensus       114 i~fE~~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen  114 IEFESKYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             HHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence            888899999999999999999999886

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.40  E-value=0.0017  Score=54.29  Aligned_cols=129  Identities=14%  Similarity=0.125  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC------C-
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT--S----AILYAARAGVYVKLNKPNAAIRDAYVALETNPD------S-  118 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~-  118 (227)
                      ..+..+|+.+...+.|+++++.|+.|++..-.  +    ..++..+|..+-+..++++|+-+..+|..+-..      + 
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            55666899999999999999999999986433  2    357889999999999999999999888766321      1 


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--ChH-----HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          119 ---AKGYKIRGMARARLGQWEEAANDLHVASKLDY--DEE-----IGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       119 ---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                         ..+++.++..+..+|..-+|.++++.+.++.-  .|.     ....++.++...|+.+.+...|+.+..
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence               23678899999999999999999999887632  232     234788899999999999888876653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.39  E-value=0.0021  Score=47.13  Aligned_cols=66  Identities=18%  Similarity=0.146  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET  114 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  114 (227)
                      .....+...+..+...|++++|+..+.+++..+|.+-.++..+-.+|...|++..|+..|++....
T Consensus        60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            345677788888999999999999999999999999999999999999999999999999887543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.37  E-value=0.00034  Score=37.29  Aligned_cols=30  Identities=27%  Similarity=0.244  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVALETNPD  117 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  117 (227)
                      ++.+|.++...|++++|+..|++++...|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            344444444444444444444444444443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.36  E-value=0.0026  Score=44.22  Aligned_cols=92  Identities=17%  Similarity=0.188  Sum_probs=66.6

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcC----C-------cHHHHHHHHHHHHhCCCCHHHH
Q 041967           57 KAVDLISEGKLEDAIGQLTEAIMLNPTSA---ILYAARAGVYVKLN----K-------PNAAIRDAYVALETNPDSAKGY  122 (227)
Q Consensus        57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~~~~~~~----~-------~~~A~~~~~~al~~~p~~~~~~  122 (227)
                      ++..++.+|++-+|++..+..+...+.+.   .....-|.+++.+.    +       .-.++++|.++..+.|.....+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46789999999999999999999887765   44555566664432    2       2347777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967          123 KIRGMARARLGQWEEAANDLHVASKL  148 (227)
Q Consensus       123 ~~la~~~~~~g~~~~A~~~~~~a~~~  148 (227)
                      +.+|.-+.....|++++...++++.+
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            77777666666677777666666655

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.34  E-value=0.0017  Score=57.13  Aligned_cols=101  Identities=19%  Similarity=0.058  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-HHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT----SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-KGYK  123 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~  123 (227)
                      +.+-.++..|..+..+|+.++|++.|++++.....    ..-+++.+|.+++-+.+|++|..++.+.++.+.-.. -..|
T Consensus       265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y  344 (468)
T PF10300_consen  265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY  344 (468)
T ss_pred             CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH
Confidence            45667899999999999999999999998853322    345799999999999999999999999998654432 2445


Q ss_pred             HHHHHHHHcCCH-------HHHHHHHHHHHhcC
Q 041967          124 IRGMARARLGQW-------EEAANDLHVASKLD  149 (227)
Q Consensus       124 ~la~~~~~~g~~-------~~A~~~~~~a~~~~  149 (227)
                      ..|.|+..+|+.       ++|...|.++..+.
T Consensus       345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  345 LAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            578999999999       78888888776554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.34  E-value=0.022  Score=45.56  Aligned_cols=124  Identities=16%  Similarity=0.077  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC--------cHHHHHHHHHHHHhCCCCH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA---ILYAARAGVYVKLNK--------PNAAIRDAYVALETNPDSA  119 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~~  119 (227)
                      -.++...+-.+++.++|++|+...++-+.++|+++   .+++.+|.+++..-+        ...|+..|+..|...|+..
T Consensus        71 ~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105          71 EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            46788999999999999999999999999999864   478888988776422        4568999999999999863


Q ss_pred             H---------------H--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhhhhHHHHHHH
Q 041967          120 K---------------G--YKIRGMARARLGQWEEAANDLHVASKLDYDE----EIGMALKKVEPNARRIQEHRRK  174 (227)
Q Consensus       120 ~---------------~--~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~  174 (227)
                      -               +  =...|..|.+.|.+-.|+..++.+++..|+.    +....+.+.+..+|-..+|...
T Consensus       151 Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         151 YAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence            1               1  1225778999999999999999999998774    2234555666666655555443

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.0018  Score=53.79  Aligned_cols=105  Identities=18%  Similarity=0.148  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---C----------------CHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNP---T----------------SAILYAARAGVYVKLNKPNAAIRDAYV  110 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~----------------~~~~~~~~g~~~~~~~~~~~A~~~~~~  110 (227)
                      ..+.....|+..+++++|..|..-|.+++..--   .                -...+.+.+.+-++.+.+..|+.....
T Consensus       221 ~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~  300 (372)
T KOG0546|consen  221 REEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE  300 (372)
T ss_pred             hhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence            446677889999999999999999999886311   1                123566788999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967          111 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI  154 (227)
Q Consensus       111 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~  154 (227)
                      ++..++...+++++++..+....+++.|.+++..+....|.+..
T Consensus       301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~  344 (372)
T KOG0546|consen  301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA  344 (372)
T ss_pred             ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence            99999999999999999999999999999999999999999833

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.27  E-value=0.022  Score=44.96  Aligned_cols=132  Identities=18%  Similarity=0.122  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH----
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLN-----PT-SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA----  119 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----  119 (227)
                      .++.+..-|+.+--.++|..|=..|.++-...     .+ .+..|..-+.|| +..++.+|+.+++++|.+..+..    
T Consensus        33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~  111 (288)
T KOG1586|consen   33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTM  111 (288)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHH
Confidence            45666667777777789999988888887642     12 355777777787 55599999999999999876543    


Q ss_pred             --HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCChHHH-------HHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          120 --KGYKIRGMARARL-GQWEEAANDLHVASKLDYDEEIG-------MALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       120 --~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                        +.++.+|.+|..- .+++.|+.+|+++-.....+++.       .........++++..+...|++..+..
T Consensus       112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s  184 (288)
T KOG1586|consen  112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS  184 (288)
T ss_pred             HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              4566789998755 99999999999999887765332       233444566777777777776665443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.22  E-value=0.00067  Score=36.12  Aligned_cols=33  Identities=21%  Similarity=0.143  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS   84 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   84 (227)
                      ++++..|.++...|++++|+..|++.+...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            468999999999999999999999999999974

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.20  E-value=0.0019  Score=52.87  Aligned_cols=79  Identities=22%  Similarity=0.163  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      .+..-...+....+.|+.++|..+|..|+.++|+++.++...|...-..++.-+|-++|-+|+.+.|.+.+++.+++..
T Consensus       115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            3444555666677889999999999999999999999999999988888888899999999999999999888887654

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.19  E-value=0.00054  Score=59.12  Aligned_cols=84  Identities=10%  Similarity=-0.035  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h--------CC---------CCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM-L--------NP---------TSAILYAARAGVYVKLNKPNAAIRDAYVA  111 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~--------~p---------~~~~~~~~~g~~~~~~~~~~~A~~~~~~a  111 (227)
                      ....|.++|.++++.|.|.-+..+|.+|+. .        .|         .+..++||.|..|+..|++-.|.++|..+
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            345678999999999999999999999995 1        11         13678999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcC
Q 041967          112 LETNPDSAKGYKIRGMARARLG  133 (227)
Q Consensus       112 l~~~p~~~~~~~~la~~~~~~g  133 (227)
                      +.....+|..|.++|.|.....
T Consensus       362 v~vfh~nPrlWLRlAEcCima~  383 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAECCIMAL  383 (696)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHh
Confidence            9999999999999999976544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.18  E-value=0.007  Score=55.71  Aligned_cols=116  Identities=19%  Similarity=0.077  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      +..-+....|..+++.|.+++|+.+++..-...+++-..+-.+-.||..++++++|...|++++..+|. .+..+.+-.+
T Consensus        41 n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFma  119 (932)
T KOG2053|consen   41 NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMA  119 (932)
T ss_pred             CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHH
Confidence            445566778899999999999998888777788888888999999999999999999999999999999 8888999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHhh
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE--EIGMALKKVEPNA  165 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~l~~~~~~~  165 (227)
                      |.+-+.|..-.+.--+..+..|.+  -.|..++-+....
T Consensus       120 yvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~  158 (932)
T KOG2053|consen  120 YVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSI  158 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhc
Confidence            999999988777777777788886  4465555554433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.18  E-value=0.0034  Score=37.76  Aligned_cols=32  Identities=16%  Similarity=0.241  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          121 GYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       121 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      .+|.+|..+.++|+|..|..++..+++++|+|
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N   34 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDN   34 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence            45666777777777777777777777777776

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.18  E-value=0.0031  Score=37.97  Aligned_cols=42  Identities=21%  Similarity=0.101  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      ++++.+|..++++|+|..|..+++.+++++|+|..+......
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            356778888888888888888888888888888776555443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.14  E-value=0.053  Score=41.66  Aligned_cols=114  Identities=15%  Similarity=0.064  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 041967           69 DAIGQLTEAIMLNPTSAI---LYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDL  142 (227)
Q Consensus        69 ~A~~~~~~al~~~p~~~~---~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~  142 (227)
                      +.+....+....+|.+..   +-..++..+...+++++|+..++.++....+.   .-+-+++|.++..+|.+++|+..+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            444444444455544432   34457888899999999999999999664433   246778999999999999999887


Q ss_pred             HHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          143 HVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       143 ~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      .....-.-........+.++...|+-.+|+..|.+.....
T Consensus       150 ~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         150 DTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             hccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            7533221112335577899999999999999998876553

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.14  E-value=0.00017  Score=59.37  Aligned_cols=88  Identities=19%  Similarity=0.038  Sum_probs=75.3

Q ss_pred             HHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHH
Q 041967           93 GVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEH  171 (227)
Q Consensus        93 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a  171 (227)
                      .-.+..|.++.|+..|..+|.++|.....|-.++.++..++....|+..|..++.++|+. .....-+.....+|+|.++
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA  201 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence            334467889999999999999999999999999999999999999999999999999997 4455666666778889888


Q ss_pred             HHHHHHHHH
Q 041967          172 RRKYERLRK  180 (227)
Q Consensus       172 ~~~~~~~~~  180 (227)
                      ...+....+
T Consensus       202 a~dl~~a~k  210 (377)
T KOG1308|consen  202 AHDLALACK  210 (377)
T ss_pred             HHHHHHHHh
Confidence            888866553

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.14  E-value=0.0007  Score=58.18  Aligned_cols=97  Identities=16%  Similarity=0.095  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNAR  166 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~  166 (227)
                      +-+.+...+.-+.|+.|+..|.+||+++|++...+-+++.++...+++..|+..+.+|++.+|.. .....-+......+
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            34456777888999999999999999999999999999999999999999999999999999986 44445556667778


Q ss_pred             hHHHHHHHHHHHHHHHHh
Q 041967          167 RIQEHRRKYERLRKEREL  184 (227)
Q Consensus       167 ~~~~a~~~~~~~~~~~~~  184 (227)
                      .+.+|...++...+..+.
T Consensus        87 ~~~~A~~~l~~~~~l~Pn  104 (476)
T KOG0376|consen   87 EFKKALLDLEKVKKLAPN  104 (476)
T ss_pred             HHHHHHHHHHHhhhcCcC
Confidence            888888888777666554

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.12  E-value=0.002  Score=56.92  Aligned_cols=98  Identities=19%  Similarity=0.082  Sum_probs=86.9

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 041967           57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAI-LYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW  135 (227)
Q Consensus        57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  135 (227)
                      .|..+...|+...|++++..|+...|.... .+.++|.+..+.|-...|-..+.+++.++-..+-.++.+|.++..+.+.
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i  692 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI  692 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence            445555679999999999999999887543 5889999999999999999999999999988888999999999999999


Q ss_pred             HHHHHHHHHHHhcCCChHH
Q 041967          136 EEAANDLHVASKLDYDEEI  154 (227)
Q Consensus       136 ~~A~~~~~~a~~~~p~~~~  154 (227)
                      +.|++.|..|+..+|.+..
T Consensus       693 ~~a~~~~~~a~~~~~~~~~  711 (886)
T KOG4507|consen  693 SGALEAFRQALKLTTKCPE  711 (886)
T ss_pred             HHHHHHHHHHHhcCCCChh
Confidence            9999999999999999844

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.12  E-value=0.011  Score=39.80  Aligned_cols=72  Identities=22%  Similarity=0.135  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHHHHHH
Q 041967          104 AIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEHRRKY  175 (227)
Q Consensus       104 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~  175 (227)
                      .+..++..+..+|++..+.+.+|..+...|++++|+..+..+++.+++.   .....+-.+...+|.-......|
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~   81 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY   81 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence            4556677777777777777777777777777777777777777777653   33445555555555543333333

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.12  Score=46.60  Aligned_cols=99  Identities=17%  Similarity=-0.002  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      ..+.+.|..+|+..+|..+++.|...+...|++      +-...+++.||+...+.+.|.++++.|-+.+|.++-..+..
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            467888899999999999999999999988775      44677889999999999999999999999999999888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCC
Q 041967          126 GMARARLGQWEEAANDLHVASKLDY  150 (227)
Q Consensus       126 a~~~~~~g~~~~A~~~~~~a~~~~p  150 (227)
                      -.+...-|.-++|+.+..+.....-
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhhhc
Confidence            8888888888999988887766543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.05  Score=43.78  Aligned_cols=123  Identities=19%  Similarity=0.136  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL----NKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      .+..-..-.++++..+++-|...+.+....+.+  ..+..+|.++...    +.+..|.-+|+..-...|..+....-.+
T Consensus       137 lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~A  214 (299)
T KOG3081|consen  137 LEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQA  214 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHH
Confidence            344445556667777777777777777666543  3444455555442    3466777777777766667777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHH
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKY  175 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~  175 (227)
                      .|+..+|+|++|...++.++.-++.+ +...++--+....|.-.++..++
T Consensus       215 v~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  215 VCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN  264 (299)
T ss_pred             HHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence            77777777777777777777777776 55555555555666665555555

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.07  E-value=0.0035  Score=51.39  Aligned_cols=69  Identities=20%  Similarity=0.018  Sum_probs=60.9

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 041967           89 AARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMA  157 (227)
Q Consensus        89 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~  157 (227)
                      .+.+.-..+.|+.++|...|+.|+.+.|+++.++..+|......++.-+|-.+|-+|+.+.|.+ ++..+
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn  189 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN  189 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence            3445555678999999999999999999999999999999999999999999999999999998 54433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.07  E-value=0.0095  Score=40.12  Aligned_cols=66  Identities=18%  Similarity=0.061  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCH
Q 041967           70 AIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS--AKGYKIRGMARARLGQW  135 (227)
Q Consensus        70 A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~  135 (227)
                      .+..+++.+..+|++..+.+.+|..+...|+++.|+..+-.++..++++  ..+.-.+-.++..+|.-
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            4567888999999999999999999999999999999999999999887  34444444445555543

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.05  E-value=0.025  Score=49.19  Aligned_cols=89  Identities=9%  Similarity=-0.020  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 041967           68 EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ-WEEAANDLHVAS  146 (227)
Q Consensus        68 ~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~  146 (227)
                      ..-...|+.|+...+.+...|.+......+.+.+.+.-..|.+++..+|+++..|..-|.-.+..+. .+.|...|.+++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            3445679999999999999999988777777789999999999999999999999999998888887 999999999999


Q ss_pred             hcCCCh-HHHH
Q 041967          147 KLDYDE-EIGM  156 (227)
Q Consensus       147 ~~~p~~-~~~~  156 (227)
                      +.+|+. ..|.
T Consensus       168 R~npdsp~Lw~  178 (568)
T KOG2396|consen  168 RFNPDSPKLWK  178 (568)
T ss_pred             hcCCCChHHHH
Confidence            999998 5554

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.03  E-value=0.023  Score=44.89  Aligned_cols=102  Identities=17%  Similarity=0.020  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH----
Q 041967           51 ANMTKLKAVDLISE-GKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA----  119 (227)
Q Consensus        51 ~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----  119 (227)
                      +..++.+|..|-.. .++++||.+|+++-+.....      .-++.-.+..-...++|.+|+..|+++....-+|+    
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence            44566778777776 78999999999998865442      12444556666678999999999999988766654    


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          120 ---KGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       120 ---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                         ..++.-|.|+.-..+.-.+...+++...++|..
T Consensus       193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F  228 (288)
T KOG1586|consen  193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF  228 (288)
T ss_pred             HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence               355667889998899999999999999999985

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.01  E-value=0.0017  Score=35.65  Aligned_cols=25  Identities=20%  Similarity=0.142  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
Q 041967           54 TKLKAVDLISEGKLEDAIGQLTEAI   78 (227)
Q Consensus        54 ~~~~g~~~~~~~~~~~A~~~~~~al   78 (227)
                      +..+|..+...|+|++|+.+|+++|
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>smart00028 TPR Tetratricopeptide repeats

Probab=97.01  E-value=0.0011  Score=34.10  Aligned_cols=29  Identities=28%  Similarity=0.321  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVALETNP  116 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p  116 (227)
                      ++.+|.++...++++.|+..+++++.++|
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            33444444444444444444444444433

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.01  E-value=0.0015  Score=35.88  Aligned_cols=25  Identities=20%  Similarity=0.106  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVAL  112 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al  112 (227)
                      |.++|.+|...|++++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556666666666666666666633

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.00  E-value=0.043  Score=53.15  Aligned_cols=101  Identities=13%  Similarity=0.041  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT--SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      .....|...|..++++.+-+.|...+.+|+.--|.  +.......|...++.|+.+.+...|+-.+.-+|...+.|..+.
T Consensus      1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred             chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence            35678999999999999999999999999999888  6678888999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcC
Q 041967          127 MARARLGQWEEAANDLHVASKLD  149 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~  149 (227)
                      ..-...|+.+.....|++++.+.
T Consensus      1642 d~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHccCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999886

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.99  E-value=0.022  Score=40.18  Aligned_cols=95  Identities=23%  Similarity=0.285  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-------
Q 041967           54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPT------------SAILYAARAGVYVKLNKPNAAIRDAYVALET-------  114 (227)
Q Consensus        54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------  114 (227)
                      ....|...+..|-|++|...+.++.+...+            ++.++..++.++..+|+|++++...+.++..       
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL   91 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL   91 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence            345667778889999999999999986433            3567788899999999999988888888753       


Q ss_pred             CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967          115 NPDS----AKGYKIRGMARARLGQWEEAANDLHVASKL  148 (227)
Q Consensus       115 ~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  148 (227)
                      +.+.    ..+.++.|..+..+|..++|+..|+.+-++
T Consensus        92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            3443    346677899999999999999999887653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.85  E-value=0.0021  Score=50.47  Aligned_cols=55  Identities=25%  Similarity=0.285  Sum_probs=28.8

Q ss_pred             cCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967           98 LNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus        98 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      .++.+.|.+.|.+++.+-|.+...|+++|......|+++.|.+.|.+.++++|.+
T Consensus         8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            3444555555555555555555555555555555555555555555555555543

>smart00028 TPR Tetratricopeptide repeats

Probab=96.84  E-value=0.0021  Score=33.00  Aligned_cols=32  Identities=28%  Similarity=0.317  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967          120 KGYKIRGMARARLGQWEEAANDLHVASKLDYD  151 (227)
Q Consensus       120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  151 (227)
                      .+++.+|.++..+|+++.|..+|.+++.+.|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            46889999999999999999999999999875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.19  Score=40.55  Aligned_cols=122  Identities=16%  Similarity=0.110  Sum_probs=105.2

Q ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HH
Q 041967           61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-KPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWE-EA  138 (227)
Q Consensus        61 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A  138 (227)
                      +.+...-..|+.+-..+|.++|.+...|..+=.++..++ +..+-+.++..++.-+|.|-.+|.-+-.+....|++. .-
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence            334456688999999999999999999888878877765 7889999999999999999999999999999999988 78


Q ss_pred             HHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          139 ANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       139 ~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      +.....++..+..| -+|.....+....+.++.-......+...+
T Consensus       133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D  177 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEED  177 (318)
T ss_pred             HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            88999999999888 889999999999999888888777766544

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.80  E-value=0.029  Score=47.95  Aligned_cols=94  Identities=19%  Similarity=0.262  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------C----------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Q 041967           54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPT--------S----------AILYAARAGVYVKLNKPNAAIRDAYVALETN  115 (227)
Q Consensus        54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------~----------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  115 (227)
                      -..-|-.++++++|..|...|..+|++..+        .          ..+-..+..||+++++.+-|+....+.|-++
T Consensus       179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln  258 (569)
T PF15015_consen  179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN  258 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence            344556667777777777777777765322        1          2355678999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 041967          116 PDSAKGYKIRGMARARLGQWEEAANDLHVASK  147 (227)
Q Consensus       116 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  147 (227)
                      |.+..-+.+.|-|...+..|.+|.+.+--+.-
T Consensus       259 P~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  259 PSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998877655443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.74  E-value=0.078  Score=47.27  Aligned_cols=124  Identities=15%  Similarity=0.058  Sum_probs=95.6

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 041967           55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTS--AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL  132 (227)
Q Consensus        55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  132 (227)
                      ...+.....+|+..+|..++..++...|..  -.++..+|.++.+.|.-..|--.+.-|+.--|....-++.+|.++..+
T Consensus       217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml  296 (886)
T KOG4507|consen  217 NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAML  296 (886)
T ss_pred             HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHH
Confidence            333444456799999999999999987653  347888999999999999988888888887777777799999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041967          133 GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERL  178 (227)
Q Consensus       133 g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~  178 (227)
                      |++.....+|..+.+.+|.. ........+..+..+...+..+..+.
T Consensus       297 ~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~  343 (886)
T KOG4507|consen  297 GEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRS  343 (886)
T ss_pred             hhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999986 44444444444555555444444333

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.73  E-value=0.11  Score=41.86  Aligned_cols=70  Identities=19%  Similarity=0.149  Sum_probs=32.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 041967           66 KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW  135 (227)
Q Consensus        66 ~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  135 (227)
                      .+++|.-.|++.-...|-.+..+...+.|++.+++|++|...++.++..++.++..+.++-.+-..+|..
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            3444444444444433334444444444444444444444444444444444444444444444444443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.64  E-value=0.22  Score=39.78  Aligned_cols=163  Identities=17%  Similarity=0.109  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC------HH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLN-----PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS------AK  120 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~  120 (227)
                      .++-..|..+-....|.++..+|++|..++     |+.+..-..++-=.....+++.|++.|++++.+-...      .+
T Consensus        72 KayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e  151 (308)
T KOG1585|consen   72 KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE  151 (308)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            344445555555566777777777777652     3333333334444456667778888888776553222      23


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCChHH-HHHHHHH--HHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 041967          121 GYKIRGMARARLGQWEEAANDLHVASKL----DYDEEI-GMALKKV--EPNARRIQEHRRKYERLRKERELKNFERERQR  193 (227)
Q Consensus       121 ~~~~la~~~~~~g~~~~A~~~~~~a~~~----~p~~~~-~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  193 (227)
                      .+-..+.++.+...+.+|-..+.+-.-+    +..+.. ...++.+  +....++..+...++...........+..+..
T Consensus       152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l  231 (308)
T KOG1585|consen  152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL  231 (308)
T ss_pred             HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence            4445667777888888777766653322    222222 2233333  33445677777777554322222122212223


Q ss_pred             HHh------hhcHHHHhhhhhhhhhhh
Q 041967          194 KQA------GADREALSGLRDGMASDF  214 (227)
Q Consensus       194 ~~~------~~~~~~~~~l~~~~~~~~  214 (227)
                      ++.      .+..++..++..|.++.+
T Consensus       232 enLL~ayd~gD~E~~~kvl~sp~~r~M  258 (308)
T KOG1585|consen  232 ENLLTAYDEGDIEEIKKVLSSPTVRNM  258 (308)
T ss_pred             HHHHHHhccCCHHHHHHHHcChHhhhh
Confidence            332      334566677776665543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.18  Score=40.35  Aligned_cols=128  Identities=17%  Similarity=0.047  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----CCCH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETN-----PDSA  119 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~  119 (227)
                      +..+...++.+...++|++|..++.+|++-..++      +-+|-..|.....+..+.++...|+++..+.     |+..
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            4455555666666789999999999999654433      3467777888888899999999999998875     3333


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH-------HHHHHHHHHhhhhHHHHHHHHHHH
Q 041967          120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI-------GMALKKVEPNARRIQEHRRKYERL  178 (227)
Q Consensus       120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~  178 (227)
                      ..-...+--....-++++|++.|++++.+.-.++.       ....+.++.+...+.++-..+.+.
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe  176 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE  176 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence            33333333445667799999999999988654321       234555666777777766666433

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.57  E-value=0.19  Score=37.01  Aligned_cols=103  Identities=14%  Similarity=-0.004  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      ...+.......+...+..++..++...--+.|..+..-..-|..+...|++.+|+..++.+..-.+..+.+.-.++.|+.
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            45566666777779999999999999888999999999999999999999999999999999999899988899999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCChHH
Q 041967          131 RLGQWEEAANDLHVASKLDYDEEI  154 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a~~~~p~~~~  154 (227)
                      .+|+..-= .+-..++..+++.+.
T Consensus        90 al~Dp~Wr-~~A~~~le~~~~~~a  112 (153)
T TIGR02561        90 AKGDAEWH-VHADEVLARDADADA  112 (153)
T ss_pred             hcCChHHH-HHHHHHHHhCCCHhH
Confidence            99998642 233344555444433

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.18  Score=41.23  Aligned_cols=63  Identities=16%  Similarity=0.025  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967           86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL  148 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  148 (227)
                      ..-+..+.-....|++..|...|..++...|.+..+...++.||...|+.+.|...+...-.-
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~  197 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ  197 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence            345556677778999999999999999999999999999999999999999988777654333

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.54  E-value=0.098  Score=37.80  Aligned_cols=69  Identities=12%  Similarity=0.049  Sum_probs=56.3

Q ss_pred             CHHHHHHHHHHHHHcCC---cHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967           84 SAILYAARAGVYVKLNK---PNAAIRDAYVALE-TNPDS-AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus        84 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      +....+++++++.+..+   ..+.+..++..++ -.|.. -...|.++..+.++++|+.++.++..+++.+|+|
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n  104 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN  104 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence            35678888888887654   6678888988886 44443 4688889999999999999999999999999988

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.032  Score=45.02  Aligned_cols=69  Identities=23%  Similarity=0.224  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGM  156 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  156 (227)
                      ..++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..+...|++....
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            334444555666677777777777777777776666667777777777777777777666666664433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.41  E-value=0.006  Score=47.94  Aligned_cols=61  Identities=23%  Similarity=0.161  Sum_probs=56.5

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH
Q 041967           59 VDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA  119 (227)
Q Consensus        59 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~  119 (227)
                      ......++.+.|.+.|.+++.+.|....-|+.+|....+.|+++.|...|++.++++|.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3456789999999999999999999999999999999999999999999999999999764

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.33  E-value=0.34  Score=40.59  Aligned_cols=110  Identities=16%  Similarity=0.083  Sum_probs=80.7

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 041967           72 GQLTEAIMLNPTSAILYAARAGVYVKLNK------------PNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAA  139 (227)
Q Consensus        72 ~~~~~al~~~p~~~~~~~~~g~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  139 (227)
                      ..|++.+..+|++..+|..+....-..-.            .+.-+..+++|++.+|++...+..+-.+.....+.+...
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45788888999999988888766655432            456788899999999999988888888888888888888


Q ss_pred             HHHHHHHhcCCCh-HHHH-HHHHHHHhhh--hHHHHHHHHHHHHHH
Q 041967          140 NDLHVASKLDYDE-EIGM-ALKKVEPNAR--RIQEHRRKYERLRKE  181 (227)
Q Consensus       140 ~~~~~a~~~~p~~-~~~~-~l~~~~~~~~--~~~~a~~~~~~~~~~  181 (227)
                      +.+++++..+|++ ..|. .+.....+..  .+...+..|.++...
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA  131 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            8999999999987 7776 3333333222  345556666555433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.33  E-value=0.063  Score=42.28  Aligned_cols=93  Identities=25%  Similarity=0.189  Sum_probs=69.8

Q ss_pred             HHHHCCCHHHHHHHHHHHHHh----CCC-C--HHHHHHHHHHHHHcCCcH-------HHHHHHHHHHHhCCC------CH
Q 041967           60 DLISEGKLEDAIGQLTEAIML----NPT-S--AILYAARAGVYVKLNKPN-------AAIRDAYVALETNPD------SA  119 (227)
Q Consensus        60 ~~~~~~~~~~A~~~~~~al~~----~p~-~--~~~~~~~g~~~~~~~~~~-------~A~~~~~~al~~~p~------~~  119 (227)
                      .+.....+++|++.|.-|+-.    .+. .  +..+..+|++|...|+.+       .|+..|.+++.....      ..
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~  165 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA  165 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence            444456789999999888852    212 2  567888899999999844       566667766655422      24


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ...+.+|.+..++|++++|.++|.+++......
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            688899999999999999999999999876544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.22  E-value=0.11  Score=39.59  Aligned_cols=101  Identities=13%  Similarity=-0.057  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC--CCHH----
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNP--DSAK----  120 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~----  120 (227)
                      .-..+..+|..+.+.|+++.|++.|.++.......   ...++++..+.+..+++..+..+..++-.+-.  .++.    
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            34788999999999999999999999988865432   45778888888899999999999988865532  2232    


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 041967          121 GYKIRGMARARLGQWEEAANDLHVASKLDY  150 (227)
Q Consensus       121 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  150 (227)
                      .....|..+...++|..|...|..+.....
T Consensus       115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  115 LKVYEGLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence            344457888889999999988887765554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.18  E-value=0.1  Score=45.69  Aligned_cols=82  Identities=16%  Similarity=0.022  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHhCCC-------------------------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC--CH
Q 041967           67 LEDAIGQLTEAIMLNPT-------------------------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPD--SA  119 (227)
Q Consensus        67 ~~~A~~~~~~al~~~p~-------------------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~  119 (227)
                      ..+|..+|+++++....                         ...+...+|.|..++|..++|+..+...++.+|.  +.
T Consensus       216 i~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l  295 (539)
T PF04184_consen  216 IVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNL  295 (539)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchh
Confidence            57788888888753211                         1346678999999999999999999999998875  56


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967          120 KGYKIRGMARARLGQWEEAANDLHVASKL  148 (227)
Q Consensus       120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~  148 (227)
                      .++.++..++..++.|.++...+.+.-.+
T Consensus       296 ~IrenLie~LLelq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  296 NIRENLIEALLELQAYADVQALLAKYDDI  324 (539)
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence            79999999999999999999988886544

The molecular function of this protein is uncertain.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.16  E-value=0.37  Score=40.32  Aligned_cols=114  Identities=18%  Similarity=0.098  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-------
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT----SAILYAARAGVYVKLNKPNAAIRDAYVALETNPD-------  117 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------  117 (227)
                      ..+..+...+..+.+.|.++.|...+.++...++.    .+.+.+..+......|+..+|+..++..+.....       
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            46788999999999999999999999998886532    4678888999999999999999999888871100       


Q ss_pred             ---------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 041967          118 ---------------------------SAKGYKIRGMARARL------GQWEEAANDLHVASKLDYDE-EIGMALKKVE  162 (227)
Q Consensus       118 ---------------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~  162 (227)
                                                 ..+++..+|.-....      +.++++...|..++.++|.. ..+..++...
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~  302 (352)
T PF02259_consen  224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN  302 (352)
T ss_pred             HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence                                       123666777777777      88889999999999999876 5454444443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.09  E-value=0.22  Score=42.43  Aligned_cols=100  Identities=8%  Similarity=-0.045  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCcHHHHHHHHH-HHHhCCCCHHHHHH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIML----NPTSAILYAARAGVYVK---LNKPNAAIRDAYV-ALETNPDSAKGYKI  124 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~g~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~~  124 (227)
                      ...++-..|...++|+.-+.+.+..-.+    -+..+...+.+|.++-+   .|+.++|+..+.. +....+.+++.+..
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            3444555566677788877777665444    33456677788888888   7899999999988 55556677888888


Q ss_pred             HHHHHHHc---------CCHHHHHHHHHHHHhcCCCh
Q 041967          125 RGMARARL---------GQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       125 la~~~~~~---------g~~~~A~~~~~~a~~~~p~~  152 (227)
                      +|.+|..+         ...+.|+.+|.++..++|+.
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            88876543         24678999999999998764

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.09  E-value=0.1  Score=43.95  Aligned_cols=98  Identities=14%  Similarity=-0.054  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC------
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT----S------AILYAARAGVYVKLNKPNAAIRDAYVALETN------  115 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------  115 (227)
                      ..+..+|..+-..+|+++|+.+..+|.++-..    +      ..+++.++..+...|..-.|.++++.+.++-      
T Consensus       163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr  242 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR  242 (518)
T ss_pred             ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence            46778899999999999999999999886432    1      3467889999999999999999999987653      


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967          116 PDSAKGYKIRGMARARLGQWEEAANDLHVASKLD  149 (227)
Q Consensus       116 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  149 (227)
                      |........+|.+|...|+.+.|..-|+.|..+-
T Consensus       243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            3445677789999999999999999999988764

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.02  E-value=0.15  Score=45.92  Aligned_cols=99  Identities=15%  Similarity=0.119  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH-HHHH
Q 041967           86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDS------AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI-GMAL  158 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~l  158 (227)
                      ..+.+-|.-+++..+|..+++.|..-+..-|.+      .+....++.||..+.+.+.|+++++.|-+.+|.+.. ...+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            456778888999999999999999999887754      467778999999999999999999999999999844 3455


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          159 KKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       159 ~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ......-++..+|.............
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~~~~  460 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSSEDE  460 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhhhcc
Confidence            56666677778888877666544333

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.92  E-value=0.055  Score=36.64  Aligned_cols=57  Identities=14%  Similarity=0.154  Sum_probs=38.0

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Q 041967           59 VDLISEGKLEDAIGQLTEAIMLNPTS---------AILYAARAGVYVKLNKPNAAIRDAYVALETN  115 (227)
Q Consensus        59 ~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  115 (227)
                      ...++.|+|..|++.+.+.++.....         ..++.++|.++...|++++|+..++.++.+-
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            34567788888877777777643221         3456667777777777777777777776653

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.89  E-value=0.13  Score=37.23  Aligned_cols=76  Identities=16%  Similarity=0.161  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967           50 AANMTKLKAVDLISEGK---LEDAIGQLTEAIM-LNPTS-AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI  124 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~-~~p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  124 (227)
                      ..+..|+.+..+.+..+   -++.+.+++..++ -.|.. -.+.|.++..+++.++|++++.+++..+..+|+|..+.-.
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            34677888888888764   5778999999986 44543 4578889999999999999999999999999999876544


Q ss_pred             H
Q 041967          125 R  125 (227)
Q Consensus       125 l  125 (227)
                      .
T Consensus       111 k  111 (149)
T KOG3364|consen  111 K  111 (149)
T ss_pred             H
Confidence            3

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.89  E-value=0.058  Score=49.32  Aligned_cols=104  Identities=27%  Similarity=0.309  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc--CCcHHHHHHHHHHHHhCCCCHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----AILYAARAGVYVKL--NKPNAAIRDAYVALETNPDSAKGY  122 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~  122 (227)
                      ..+......|+.++..++|..|.--|..++.+-|++    .....+.+.|++..  ++|..++..+..++...|....++
T Consensus        51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L  130 (748)
T KOG4151|consen   51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL  130 (748)
T ss_pred             HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence            456778899999999999999988899999888853    55677888888775  689999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          123 KIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       123 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      +..+.+|...+.++-|++.+.-.....|.+
T Consensus       131 l~r~~~y~al~k~d~a~rdl~i~~~~~p~~  160 (748)
T KOG4151|consen  131 LKRARKYEALNKLDLAVRDLRIVEKMDPSN  160 (748)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            999999999999999999999899999998

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.88  E-value=0.99  Score=40.97  Aligned_cols=132  Identities=14%  Similarity=0.005  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC--CCHHHHHH--
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP--DSAKGYKI--  124 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~--  124 (227)
                      .....|...+...-.-|-++.....|++.|++.--.|....|.|..+-...-|+++.+.|++.|.+.+  .-.+.|..  
T Consensus       475 rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL  554 (835)
T KOG2047|consen  475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL  554 (835)
T ss_pred             HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence            34677888888888899999999999999999888899999999999999999999999999999864  33344433  


Q ss_pred             -HHHHHHHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          125 -RGMARARLGQWEEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       125 -la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                       .......--..+.|...|++|+...|..   .+....+......|....+..-|+++..
T Consensus       555 tkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  555 TKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence             2333333346889999999999999964   2344667777888998888888877643

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.80  E-value=0.62  Score=42.22  Aligned_cols=63  Identities=21%  Similarity=0.100  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLN-PTS---AILYAARAGVYVKLNKPNAAIRDAYVALET  114 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  114 (227)
                      ..|...|..|-..|+.+.|...|++++... +.-   +..|++-|...+...+++.|+...+.|...
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v  454 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV  454 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence            345566666666666666666666665532 211   345555555555555555555555555443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.69  E-value=0.031  Score=31.10  Aligned_cols=29  Identities=21%  Similarity=0.083  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967           86 ILYAARAGVYVKLNKPNAAIRDAYVALET  114 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~  114 (227)
                      .++.++|.+|..+|++++|+..+++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34555666666666666666666665544

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.68  E-value=0.12  Score=41.79  Aligned_cols=76  Identities=22%  Similarity=0.224  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      .....=..+...++|+.|+.+.++.+.++|.++.-+..+|.+|.+.|.+..|+++++..+...|+.+.+-...+..
T Consensus       183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            3445556778889999999999999999999999999999999999999999999999999999998776555443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.58  E-value=0.55  Score=40.08  Aligned_cols=133  Identities=17%  Similarity=0.066  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHHhCC
Q 041967           50 AANMTKLKAVDLIS---EGKLEDAIGQLTEAIM-LNPTSAILYAARAGVYVKL---------NKPNAAIRDAYVALETNP  116 (227)
Q Consensus        50 ~~~~~~~~g~~~~~---~~~~~~A~~~~~~al~-~~p~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p  116 (227)
                      .....+..|..+-+   .|+.++|+..+..++. ..+.+++.+...|.+|-..         ...++|+..|.++..++|
T Consensus       178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~  257 (374)
T PF13281_consen  178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP  257 (374)
T ss_pred             chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence            44556677777777   8999999999999554 5567889999999988542         237789999999999997


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------h---cCCChHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          117 DSAKGYKIRGMARARLGQWEEAANDLHVAS--------K---LDYDEEIGM--ALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       117 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~--------~---~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      +.-. -++++.++...|........+++..        +   ..+...-|.  .+.++..-.|+.+.+...++++.+..+
T Consensus       258 ~~Y~-GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~  336 (374)
T PF13281_consen  258 DYYS-GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP  336 (374)
T ss_pred             cccc-hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence            5543 3455666666664332222222211        1   112223343  556666667788888877777765543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.42  E-value=0.05  Score=30.18  Aligned_cols=30  Identities=27%  Similarity=0.326  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIML   80 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~   80 (227)
                      +..+..+|..+...|+|++|+.++.+++..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            567899999999999999999999999975

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.41  E-value=0.32  Score=40.75  Aligned_cols=102  Identities=19%  Similarity=0.136  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C-C-------------------------C------CHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML--N-P-------------------------T------SAILYAARAGVY   95 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~-p-------------------------~------~~~~~~~~g~~~   95 (227)
                      .+...+..+..+...|+..+|+..+...+..  . +                         .      .+.++..+|...
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            4577888999999999999999999888871  1 1                         0      134555566666


Q ss_pred             HHc------CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhcCCC
Q 041967           96 VKL------NKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW-----------------EEAANDLHVASKLDYD  151 (227)
Q Consensus        96 ~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------~~A~~~~~~a~~~~p~  151 (227)
                      ...      +.++.++..|..++.++|.+.++|+.+|..+...-+.                 ..|+..|-+++..++.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            566      7888999999999999999999999998877655322                 2377777777777765

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.32  E-value=0.99  Score=42.23  Aligned_cols=95  Identities=16%  Similarity=0.101  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 041967           85 AILYAARAGVYVKLNKPNAAIRDAYVA----------LETNPD----------SAKGYKIRGMARARLGQWEEAANDLHV  144 (227)
Q Consensus        85 ~~~~~~~g~~~~~~~~~~~A~~~~~~a----------l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~  144 (227)
                      -..|++.|.-+...++.+.|+++|+++          +.-+|.          ++..|-++|.-+...|+.+.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            457888999998999999999999874          333443          345788899999999999999999988


Q ss_pred             HHhcCC---------------------Ch-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          145 ASKLDY---------------------DE-EIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       145 a~~~~p---------------------~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      |-....                     .| .+...+++.+.+.|+..+|...|.++.
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            765431                     23 345688999999999999999996664

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.16  E-value=0.063  Score=44.26  Aligned_cols=84  Identities=8%  Similarity=0.001  Sum_probs=63.8

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967           73 QLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI-RGMARARLGQWEEAANDLHVASKLDYD  151 (227)
Q Consensus        73 ~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~a~~~~p~  151 (227)
                      .|.++....|.++..|...+..-.+.|-+.+.-..|.+++..+|.+.+.|.. .+.-++..++++.+...|.++++++|+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            4555556667778888777777777777888888888888888888888777 455577788888888888888888888


Q ss_pred             h-HHHH
Q 041967          152 E-EIGM  156 (227)
Q Consensus       152 ~-~~~~  156 (227)
                      + .+|.
T Consensus       175 ~p~iw~  180 (435)
T COG5191         175 SPRIWI  180 (435)
T ss_pred             CchHHH
Confidence            7 5554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.12  E-value=1.3  Score=36.20  Aligned_cols=102  Identities=14%  Similarity=0.050  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh----CCCC----------HHHHHHHHHHHHHcCCcH---HHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEG-KLEDAIGQLTEAIML----NPTS----------AILYAARAGVYVKLNKPN---AAIRDAYV  110 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~----~p~~----------~~~~~~~g~~~~~~~~~~---~A~~~~~~  110 (227)
                      .-+..+++.|...+..+ +++.|+..+++++++    .+..          ..++..++.+|+..+.++   +|....+.
T Consensus        33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~  112 (278)
T PF08631_consen   33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRL  112 (278)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            35677888888888888 899998888888876    2211          346677788888877644   45555555


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 041967          111 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDY  150 (227)
Q Consensus       111 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  150 (227)
                      +-.-.|+.+..++..-.++...++.+.+...+.+++.--+
T Consensus       113 l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  113 LESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            6666777777775555555557888888888888877654

It is also involved in sporulation [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.07  E-value=0.35  Score=31.48  Aligned_cols=62  Identities=13%  Similarity=0.072  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHcCCcHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAA---RAGVYVKLNKPNAAIRDAYV  110 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---~g~~~~~~~~~~~A~~~~~~  110 (227)
                      +.+......|..++...+.++|+....+++...++.+..+..   +..+|...|.|.+++.+..+
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677888888888888888888888888887776654444   44556667777777666543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.00  E-value=0.72  Score=32.15  Aligned_cols=62  Identities=13%  Similarity=0.085  Sum_probs=48.6

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCh
Q 041967           91 RAGVYVKLNKPNAAIRDAYVALETNPDSAK---GYKIRGMARARLGQ-----------WEEAANDLHVASKLDYDE  152 (227)
Q Consensus        91 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~-----------~~~A~~~~~~a~~~~p~~  152 (227)
                      ++.-++..|++-+|+...+..+...+....   .+..-|.++..+..           .-.++.+|.++..+.|..
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~   77 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS   77 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence            567788999999999999999999887764   44445666655442           346889999999998876

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.96  E-value=1  Score=39.18  Aligned_cols=130  Identities=12%  Similarity=-0.002  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH--HHHHHHH---------hCC
Q 041967           49 DAANMTKLKAVDLISEGK-LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIR--DAYVALE---------TNP  116 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~--~~~~al~---------~~p  116 (227)
                      .-+..++..|..++..|. -++|+.++..++...|.+..+....  +.+-...|..|+.  .+.+.+.         +.|
T Consensus       377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~  454 (549)
T PF07079_consen  377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP  454 (549)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            346677888899999987 7889999999999888875322211  1111111222221  1122222         122


Q ss_pred             C---CHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          117 D---SAKGYKIR--GMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       117 ~---~~~~~~~l--a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                      -   +...-..+  |.-++..|+|..+.-+..=..++.|...+...+|-+......+.+|...+..+--
T Consensus       455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~  523 (549)
T PF07079_consen  455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP  523 (549)
T ss_pred             ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence            2   22333333  4456788888888888888888888667778888888888888888877766543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.96  E-value=1.7  Score=35.56  Aligned_cols=112  Identities=13%  Similarity=-0.051  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CcHHHHHHHHHHHHhCCCC
Q 041967           51 ANMTKLKAVDLIS----EGKLEDAIGQLTEAIMLNPTS-AILYAARAGVYVKLN-------KPNAAIRDAYVALETNPDS  118 (227)
Q Consensus        51 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~~-------~~~~A~~~~~~al~~~p~~  118 (227)
                      +...+.+|..+..    ..++.+|...|.++....-.. ..+.+.+|.+|..-.       +...|+..|.++-...  +
T Consensus       109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~  186 (292)
T COG0790         109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N  186 (292)
T ss_pred             HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence            4567777777776    448888888888888764322 234777777776541       2336888888877765  7


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhh
Q 041967          119 AKGYKIRGMARAR----LGQWEEAANDLHVASKLDYDEEIGMALKKVEPNAR  166 (227)
Q Consensus       119 ~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~  166 (227)
                      +.+.+.+|.+|..    ..++..|..+|.++..... ......++ +....|
T Consensus       187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~-~~~~~g  236 (292)
T COG0790         187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHH-HHHhcC
Confidence            7888888877754    3378888899998888876 44444555 444444

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.92  E-value=1  Score=38.38  Aligned_cols=108  Identities=17%  Similarity=0.024  Sum_probs=73.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--------------CCC------------
Q 041967           64 EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET--------------NPD------------  117 (227)
Q Consensus        64 ~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------------~p~------------  117 (227)
                      ..|.+.-+..    +..+|...+.+..++.++..+|++..|...+++|+-.              ++.            
T Consensus        23 ~~Dp~~l~~l----l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~e   98 (360)
T PF04910_consen   23 SHDPNALINL----LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPE   98 (360)
T ss_pred             ccCHHHHHHH----HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcccc
Confidence            3455544433    4668888899999999999999988888888877521              111            


Q ss_pred             CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-h--HHHHHHHHHHHhhhhHHHHHHHH
Q 041967          118 SA---KGYKIRGMARARLGQWEEAANDLHVASKLDYD-E--EIGMALKKVEPNARRIQEHRRKY  175 (227)
Q Consensus       118 ~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~--~~~~~l~~~~~~~~~~~~a~~~~  175 (227)
                      |.   .+.++....+.+.|-+..|.++++-.+.++|. |  .+...+.-...+.+++.-...-+
T Consensus        99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~  162 (360)
T PF04910_consen   99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFS  162 (360)
T ss_pred             chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHH
Confidence            11   26777788889999999999999999999998 4  23334444444555554333333

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=94.82  E-value=0.35  Score=42.38  Aligned_cols=75  Identities=16%  Similarity=0.049  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK-PNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      ...|........+.+.+.+-...|.+++..+|+++..|..-|.-.+..+. .+.|.+.|.++++.+|+++..|.-.
T Consensus       105 ~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey  180 (568)
T KOG2396|consen  105 VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY  180 (568)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence            45566666666666779999999999999999999999988888888875 9999999999999999999866543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.81  E-value=0.49  Score=38.70  Aligned_cols=80  Identities=14%  Similarity=0.049  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041967           67 LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVAS  146 (227)
Q Consensus        67 ~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  146 (227)
                      |..=+....++++.  ....++..++..+...|+++.++..+++.+..+|-+...|..+-..|...|+...|+..|.+..
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            44444444444432  1356778888999999999999999999999999999999999999999999999999999887


Q ss_pred             hc
Q 041967          147 KL  148 (227)
Q Consensus       147 ~~  148 (227)
                      +.
T Consensus       215 ~~  216 (280)
T COG3629         215 KT  216 (280)
T ss_pred             HH
Confidence            73

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.58  E-value=1.5  Score=38.64  Aligned_cols=123  Identities=19%  Similarity=0.113  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC--------
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-S--AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS--------  118 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------  118 (227)
                      .+..++-+|.....-+.|+.|...|..|.++... +  +.+..|+|..|+..++-+.--+.++   .+.|.|        
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~  442 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQR  442 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHH
Confidence            5678889999999999999999999999986543 2  3466788999999887555333333   344543        


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH-------HHHHHHHHHhhhhHHHHHHHH
Q 041967          119 --AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI-------GMALKKVEPNARRIQEHRRKY  175 (227)
Q Consensus       119 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-------~~~l~~~~~~~~~~~~a~~~~  175 (227)
                        ..++|..|...+..+++.+|...+.+.++.....+.       ...++.+....|+..++..-.
T Consensus       443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmv  508 (629)
T KOG2300|consen  443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMV  508 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhcc
Confidence              237888899999999999999999999998643221       346677777777776665533

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.43  E-value=0.48  Score=39.73  Aligned_cols=92  Identities=13%  Similarity=-0.030  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHH---HHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIML-NPTSAILYA---ARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~---~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ++.---..+|.+|+...-...+.+.+-. +|+-|-+-|   -++-++...|-|..|....++++++||.+.-+...++.+
T Consensus       139 a~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHV  218 (491)
T KOG2610|consen  139 AVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHV  218 (491)
T ss_pred             hhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHH
Confidence            3333445566666666666666666655 555433222   234445556777777777777777777776666666666


Q ss_pred             HHHcCCHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHV  144 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~  144 (227)
                      +...|+++++.+...+
T Consensus       219 lem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  219 LEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHhcchhhhHHHHHHh
Confidence            6666766666665543

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.42  E-value=0.19  Score=40.66  Aligned_cols=62  Identities=15%  Similarity=-0.043  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967           70 AIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR  131 (227)
Q Consensus        70 A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  131 (227)
                      |..+|.+|+.+.|.+...|..+|.++...|+.-.|+-+|-+++....-++.+..++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999998776678889998888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.41  E-value=0.1  Score=43.05  Aligned_cols=76  Identities=12%  Similarity=0.043  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAAR-AGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      ....|...+....+.|-|.+-...|.+++..+|.+.+.|..- +.-+...++++.+...|.++++++|+++..|+..
T Consensus       106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey  182 (435)
T COG5191         106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY  182 (435)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence            467788888888888899999999999999999999988763 3344567899999999999999999999876653

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.41  E-value=0.77  Score=39.30  Aligned_cols=101  Identities=14%  Similarity=0.098  Sum_probs=79.3

Q ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-C---HH
Q 041967           63 SEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN--KPNAAIRDAYVALETNPDSAKGYKIRGMARARLG-Q---WE  136 (227)
Q Consensus        63 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~---~~  136 (227)
                      +..-++.-+.+...++..+|++..+|+-+..++.+.+  ++..-++.++++++.+|.|-.+|..+-.+..... .   ..
T Consensus        87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~  166 (421)
T KOG0529|consen   87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK  166 (421)
T ss_pred             HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence            3346778888999999999999999999999999876  4789999999999999999877666544443333 2   56


Q ss_pred             HHHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 041967          137 EAANDLHVASKLDYDE-EIGMALKKVEP  163 (227)
Q Consensus       137 ~A~~~~~~a~~~~p~~-~~~~~l~~~~~  163 (227)
                      +-+.+..+++.-++.| .+|..-..+..
T Consensus       167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  167 EELEFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             hHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence            6788888999989998 77765544443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.35  E-value=0.85  Score=38.90  Aligned_cols=107  Identities=15%  Similarity=-0.083  Sum_probs=85.1

Q ss_pred             HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-C----C
Q 041967           46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-SAI-LYAARAGVYVKLNKPNAAIRDAYVALETNP-D----S  118 (227)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~-~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~----~  118 (227)
                      +++.-..+++.....+.++|.|..|++..+-.+.++|. ++. +++.+-....+.++++--+..++....... .    -
T Consensus        98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~l  177 (360)
T PF04910_consen   98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLL  177 (360)
T ss_pred             cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhC
Confidence            44556788899999999999999999999999999999 665 444455555667888888888877655322 1    3


Q ss_pred             HHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhcCCCh
Q 041967          119 AKGYKIRGMARARLGQW---------------EEAANDLHVASKLDYDE  152 (227)
Q Consensus       119 ~~~~~~la~~~~~~g~~---------------~~A~~~~~~a~~~~p~~  152 (227)
                      |..-+..+.+++.+++-               +.|...+++|+...|.-
T Consensus       178 Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  178 PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            45778889999999998               89999999999999864

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.35  E-value=1.3  Score=33.78  Aligned_cols=67  Identities=13%  Similarity=0.084  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967           85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYD  151 (227)
Q Consensus        85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  151 (227)
                      ..++..+|..|++.|+++.|++.|.++.......   ...++.+-.+....+++.....++.++-.+-..
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~  105 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK  105 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence            3578899999999999999999999987765333   357788888899999999999998988777443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.17  E-value=2.5  Score=36.29  Aligned_cols=52  Identities=15%  Similarity=0.049  Sum_probs=31.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Q 041967           65 GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP  116 (227)
Q Consensus        65 ~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  116 (227)
                      .+...|.....+++++.|+...+-..-+..+++.|+..++-..++.+-+.+|
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP  294 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP  294 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence            4566666666666666666655555555666666666666666666555544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.03  E-value=0.54  Score=40.87  Aligned_cols=57  Identities=14%  Similarity=-0.013  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAY  109 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~  109 (227)
                      .-+..-|..++..|+|.++.-+-.=..+..| ++.+|..+|.|.+..++|.+|-.++.
T Consensus       463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~  519 (549)
T PF07079_consen  463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ  519 (549)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3444555666666666666666555666666 56666666666666666666666653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.02  E-value=0.94  Score=35.65  Aligned_cols=78  Identities=18%  Similarity=0.020  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Q 041967           49 DAANMTKLKAVDLISEGK-------LEDAIGQLTEAIMLNP--T----SAILYAARAGVYVKLNKPNAAIRDAYVALETN  115 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~-------~~~A~~~~~~al~~~p--~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  115 (227)
                      ..+..+..+|..+-..|+       +..|+..|.+++....  .    ...+.+.+|.++++.|++++|+.+|.+++...
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            356677788888888887       4667777777776432  2    25688899999999999999999999999775


Q ss_pred             CCCH-HHHHHHH
Q 041967          116 PDSA-KGYKIRG  126 (227)
Q Consensus       116 p~~~-~~~~~la  126 (227)
                      -... ..+..+|
T Consensus       196 ~~s~~~~l~~~A  207 (214)
T PF09986_consen  196 KASKEPKLKDMA  207 (214)
T ss_pred             CCCCcHHHHHHH
Confidence            4333 2444443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=93.98  E-value=1.1  Score=39.94  Aligned_cols=66  Identities=5%  Similarity=-0.084  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE  113 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  113 (227)
                      ++.....|+.+-..+-.+ .+++....|++.+...|.++.+|.......+..++|+.....|.+++.
T Consensus        16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv   81 (656)
T KOG1914|consen   16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV   81 (656)
T ss_pred             CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334455555554444333 566666666666666666666666666666666666666666655553

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.97  E-value=1.4  Score=39.86  Aligned_cols=98  Identities=14%  Similarity=0.039  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHh
Q 041967           50 AANMTKLKAVDLISE-----GKLEDAIGQLTEAIML-----NPTSAILYAARAGVYVKLN-----KPNAAIRDAYVALET  114 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~-----~p~~~~~~~~~g~~~~~~~-----~~~~A~~~~~~al~~  114 (227)
                      ...+....|.+++.-     +|.+.|+.+|..+...     .-..+.+.+.+|.+|.+..     +...|+..|.++-.+
T Consensus       243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~  322 (552)
T KOG1550|consen  243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL  322 (552)
T ss_pred             chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence            344556666666654     5788888888887661     0114456777888887743     556688888777766


Q ss_pred             CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC
Q 041967          115 NPDSAKGYKIRGMARARLG---QWEEAANDLHVASKLD  149 (227)
Q Consensus       115 ~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~  149 (227)
                        .++.+.+.+|.++..-.   ++..|..+|..|....
T Consensus       323 --g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G  358 (552)
T KOG1550|consen  323 --GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG  358 (552)
T ss_pred             --CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence              46667777888776655   5667888888777665

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.83  E-value=3.4  Score=37.38  Aligned_cols=93  Identities=12%  Similarity=-0.105  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHCC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           54 TKLKAVDLISEG-----KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN---KPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        54 ~~~~g~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      .+.+|..|++..     ++..|+.+|.++-+..  ++.+.+.+|.++....   ++..|..+|..|...  .+..+.+++
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~l  366 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRL  366 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHH
Confidence            556788888743     7889999999998775  5678888999998766   578999999998876  578899999


Q ss_pred             HHHHHHc----CCHHHHHHHHHHHHhcCC
Q 041967          126 GMARARL----GQWEEAANDLHVASKLDY  150 (227)
Q Consensus       126 a~~~~~~----g~~~~A~~~~~~a~~~~p  150 (227)
                      |.||..=    -+...|..+|.++...++
T Consensus       367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  367 ALCYELGLGVERNLELAFAYYKKAAEKGN  395 (552)
T ss_pred             HHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence            9997643    378899999999999983

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.80  E-value=0.27  Score=26.88  Aligned_cols=18  Identities=28%  Similarity=0.322  Sum_probs=6.6

Q ss_pred             HHHHHHHHCCCHHHHHHH
Q 041967           56 LKAVDLISEGKLEDAIGQ   73 (227)
Q Consensus        56 ~~g~~~~~~~~~~~A~~~   73 (227)
                      ..|-.+..+|+|++|+..
T Consensus         6 ~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    6 GLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHH
Confidence            333333333333333333

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.75  E-value=1.7  Score=39.03  Aligned_cols=96  Identities=20%  Similarity=0.013  Sum_probs=60.9

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH-HHHHHhCCCCHHHHHHH------HHHH
Q 041967           57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDA-YVALETNPDSAKGYKIR------GMAR  129 (227)
Q Consensus        57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~~l------a~~~  129 (227)
                      +...+...++...+...+..++..+|.++.++.++|.+....|....++..+ +.+...-|++..+..-+      +..+
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL  152 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence            3444445566666666677777777777777777777666655444444333 44666777766544444      6666


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ..+|...++...+.++..+.|.+
T Consensus       153 ~~l~~~~~~~~~l~~~~d~~p~~  175 (620)
T COG3914         153 KLLGRTAEAELALERAVDLLPKY  175 (620)
T ss_pred             HHhccHHHHHHHHHHHHHhhhhh
Confidence            77777777777777777777765

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.68  E-value=3.3  Score=33.86  Aligned_cols=124  Identities=16%  Similarity=0.025  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHh----CC---CC
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-KPNAAIRDAYVALET----NP---DS  118 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~----~p---~~  118 (227)
                      +.+.+..++.++.......+.+.+..+           +..+++.|...+..+ +++.|+.++++++.+    .+   ..
T Consensus         8 ~~~~A~~~~~K~~~~~~~~~~~~~~~L-----------a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~   76 (278)
T PF08631_consen    8 DLDLAEHMYSKAKDLLNSLDPDMAEEL-----------ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLS   76 (278)
T ss_pred             CHHHHHHHHHHhhhHHhcCCcHHHHHH-----------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccC
Confidence            345778888888888776666666443           466888999999999 999999999999887    21   11


Q ss_pred             -------HHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          119 -------AKGYKIRGMARARLGQWEE---AANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       119 -------~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                             ..++..++.+|...+.++.   |...+..+-.-.|+. .+...--++....++.......+.+++..
T Consensus        77 ~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   77 PDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence                   2367778999999887664   444555555555664 33322222223345555556666555544

It is also involved in sporulation [].

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.56  E-value=3.5  Score=37.10  Aligned_cols=93  Identities=23%  Similarity=0.096  Sum_probs=72.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967           66 KLEDAIGQLTEAIMLNPTSAILYAA--RAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLH  143 (227)
Q Consensus        66 ~~~~A~~~~~~al~~~p~~~~~~~~--~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  143 (227)
                      .-..++..+...+..+|.++.....  +...+...+....+...+..++..+|.+..++.++|.++...|....+...+.
T Consensus        46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~  125 (620)
T COG3914          46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS  125 (620)
T ss_pred             chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3344777788888888888775332  57777778899899999999999999999999999999888887766665555


Q ss_pred             H-HHhcCCCh-HHHHHH
Q 041967          144 V-ASKLDYDE-EIGMAL  158 (227)
Q Consensus       144 ~-a~~~~p~~-~~~~~l  158 (227)
                      . +....|.+ .....+
T Consensus       126 ~~a~~~~~~~~~~~~~~  142 (620)
T COG3914         126 EIAEWLSPDNAEFLGHL  142 (620)
T ss_pred             HHHHhcCcchHHHHhhH
Confidence            4 88888888 444333

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.50  E-value=0.14  Score=28.42  Aligned_cols=26  Identities=27%  Similarity=0.239  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVALE  113 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al~  113 (227)
                      +..+|.+-+..++|..|+.+|.+++.
T Consensus         4 ~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    4 YDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33344444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.48  E-value=0.99  Score=36.98  Aligned_cols=66  Identities=24%  Similarity=0.213  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET  114 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  114 (227)
                      ....++..++..+...|+++.++..+++.+..+|.+-..|..+-..|+..|+...|+..|++.-..
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            345677888999999999999999999999999999999999999999999999999999987664

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.38  E-value=0.19  Score=27.89  Aligned_cols=30  Identities=20%  Similarity=0.288  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967          120 KGYKIRGMARARLGQWEEAANDLHVASKLD  149 (227)
Q Consensus       120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  149 (227)
                      .+|..+|.+-...++|.+|+..|.+++.+.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            468899999999999999999999998763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=93.27  E-value=4.5  Score=34.11  Aligned_cols=98  Identities=18%  Similarity=0.027  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC----------------
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN----------------  115 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------  115 (227)
                      ..-+.+-....+..+..+-+.....|++++|.++.+|..++.-.  .--..+|...++++++..                
T Consensus       185 r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~  262 (556)
T KOG3807|consen  185 RPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQ  262 (556)
T ss_pred             ChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc
Confidence            34455667778889999999999999999999999998887543  223445566666655431                


Q ss_pred             -------CCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967          116 -------PDSAKGY--KIRGMARARLGQWEEAANDLHVASKLDYD  151 (227)
Q Consensus       116 -------p~~~~~~--~~la~~~~~~g~~~~A~~~~~~a~~~~p~  151 (227)
                             ..+.-.|  .++++|-.++|...+|++.++...+-.|-
T Consensus       263 ~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl  307 (556)
T KOG3807|consen  263 HEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL  307 (556)
T ss_pred             hhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence                   1122233  35899999999999999999988887774

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.23  E-value=0.78  Score=43.88  Aligned_cols=97  Identities=12%  Similarity=0.024  Sum_probs=77.1

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----C---CcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967           55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKL----N---KPNAAIRDAYVALETNPDSAKGYKI  124 (227)
Q Consensus        55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~  124 (227)
                      ....++++..+.|++|+..|.+.-...|.-   ..+.+..|...+..    |   .+.+|+.-|+..- -.|.-|--|.-
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  557 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG  557 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence            334567778889999999999988888874   46888888888764    2   3556666665533 34677778889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          125 RGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       125 la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      .|.+|-++|+|++-+++|.-|++..|..
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (932)
T PRK13184        558 KALVYQRLGEYNEEIKSLLLALKRYSQH  585 (932)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999987

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.03  E-value=0.65  Score=31.28  Aligned_cols=57  Identities=18%  Similarity=0.151  Sum_probs=45.0

Q ss_pred             HHHcCCcHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967           95 YVKLNKPNAAIRDAYVALETNPD---------SAKGYKIRGMARARLGQWEEAANDLHVASKLDYD  151 (227)
Q Consensus        95 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  151 (227)
                      ..+.|+|..|+..+.+.+.....         ...++.++|.++...|.+++|+..++.++++-..
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            35789999998888877654322         1357788999999999999999999999988544

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.02  E-value=0.51  Score=25.79  Aligned_cols=33  Identities=12%  Similarity=-0.102  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHH--HHHHHHhCCCC
Q 041967           86 ILYAARAGVYVKLNKPNAAIRD--AYVALETNPDS  118 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~--~~~al~~~p~~  118 (227)
                      ..++.+|..++..|++++|+..  |.-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            5688899999999999999999  54888887754

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=92.84  E-value=7  Score=35.20  Aligned_cols=125  Identities=8%  Similarity=-0.052  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN-PDSAKGYKIRG  126 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la  126 (227)
                      +.+...|......-...|+++...-.|+.++-........|...+.-.-..|+..-|-..+.++.++. |..+..+...+
T Consensus       294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a  373 (577)
T KOG1258|consen  294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA  373 (577)
T ss_pred             HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence            35667788888888889999999999999998888888899999998888899999998888887765 66777888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHH
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHR  172 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~  172 (227)
                      ..-...|++.+|...|+++..-.|+. .+...-..+..+.|+...+.
T Consensus       374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  374 RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            88899999999999999999988886 44333344445566666555

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.78  E-value=0.15  Score=25.51  Aligned_cols=17  Identities=29%  Similarity=0.327  Sum_probs=6.6

Q ss_pred             HHHHHHHHcCCcHHHHH
Q 041967           90 ARAGVYVKLNKPNAAIR  106 (227)
Q Consensus        90 ~~g~~~~~~~~~~~A~~  106 (227)
                      ++|.++...|++++|..
T Consensus         6 ~la~~~~~~G~~~eA~~   22 (26)
T PF07721_consen    6 ALARALLAQGDPDEAER   22 (26)
T ss_pred             HHHHHHHHcCCHHHHHH
Confidence            33333333333333333

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=92.71  E-value=3.1  Score=34.84  Aligned_cols=117  Identities=13%  Similarity=-0.021  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH-HH--HcCCHHHHHHHHH
Q 041967           67 LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA-RA--RLGQWEEAANDLH  143 (227)
Q Consensus        67 ~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~--~~g~~~~A~~~~~  143 (227)
                      .+..+..|++||+.+|++...+..+-.+..+..+.++...-++.++..+|.+...|..+-.. ..  ..-.+......|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            46778899999999999999988888888888899999999999999999998776664332 22  2334666777777


Q ss_pred             HHHhcCCCh-------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          144 VASKLDYDE-------------------EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       144 ~a~~~~p~~-------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      +++..-..-                   .+...+.....+.|..+.|...++.+....-
T Consensus       127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            666542211                   0112344445678888888888877765544

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=92.55  E-value=0.66  Score=38.08  Aligned_cols=52  Identities=31%  Similarity=0.258  Sum_probs=26.0

Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967           92 AGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLH  143 (227)
Q Consensus        92 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  143 (227)
                      +..|...|.+.+|++.+++++.++|-+...+..+-.++..+|+--.+.++|.
T Consensus       286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khye  337 (361)
T COG3947         286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYE  337 (361)
T ss_pred             HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence            4444445555555555555555555555555555555555555444444444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.41  E-value=3.6  Score=30.78  Aligned_cols=93  Identities=14%  Similarity=0.032  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHH-HHHHHHHHh
Q 041967           86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIG-MALKKVEPN  164 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-~~l~~~~~~  164 (227)
                      ..+.....+-...++...+...+.-.-.+.|..+..-..-|.++...|++.+|+..|+.+....|..... ..+..++..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            3566677777788899999999999999999999999999999999999999999999998888887544 466666655


Q ss_pred             hhhHHHHHHHHHHHH
Q 041967          165 ARRIQEHRRKYERLR  179 (227)
Q Consensus       165 ~~~~~~a~~~~~~~~  179 (227)
                      .++ ...+.......
T Consensus        91 ~~D-~~Wr~~A~evl  104 (160)
T PF09613_consen   91 LGD-PSWRRYADEVL  104 (160)
T ss_pred             cCC-hHHHHHHHHHH
Confidence            555 33444334343

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=91.92  E-value=0.75  Score=33.68  Aligned_cols=47  Identities=15%  Similarity=0.159  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN   99 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   99 (227)
                      .....+...+..|+|..|..+.+.++..+|++..+...++.++.++|
T Consensus        72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            44555555666666666666666666666666555555555554443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.81  E-value=0.27  Score=24.55  Aligned_cols=24  Identities=21%  Similarity=0.058  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 041967          120 KGYKIRGMARARLGQWEEAANDLH  143 (227)
Q Consensus       120 ~~~~~la~~~~~~g~~~~A~~~~~  143 (227)
                      .+++.+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467889999999999999998765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.69  E-value=2.8  Score=36.99  Aligned_cols=55  Identities=18%  Similarity=0.198  Sum_probs=43.0

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967           58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVAL  112 (227)
Q Consensus        58 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  112 (227)
                      -...+..|+.-.|-+....++...|..|.....++..+...|+|+.+.+.+.-+-
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~  350 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVE  350 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchh
Confidence            3445667888888888888888888888888888888888888888887775443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=91.54  E-value=1.1  Score=36.31  Aligned_cols=61  Identities=15%  Similarity=0.016  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 041967          104 AIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPN  164 (227)
Q Consensus       104 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~  164 (227)
                      |..+|.+|+.+.|.+...|..+|.+....|+.-.|+=+|-+++....-. .+..++..+...
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999764333 445566665554

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=91.47  E-value=2.4  Score=39.89  Aligned_cols=96  Identities=16%  Similarity=0.007  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH----------HhCCC----------CHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAI----------MLNPT----------SAILYAARAGVYVKLNKPNAAIRDAYVA  111 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al----------~~~p~----------~~~~~~~~g~~~~~~~~~~~A~~~~~~a  111 (227)
                      ..|++.+..+-..+|.+.|+++|+++-          .-+|.          ++..|..-|...-..|+.+.|+.+|..|
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            468888999999999999999998753          22343          3566667788888889999999999887


Q ss_pred             HHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 041967          112 LET---------------------NPDSAKGYKIRGMARARLGQWEEAANDLHVASK  147 (227)
Q Consensus       112 l~~---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  147 (227)
                      -..                     ...+..+-|-+|..|...|++.+|+..|-+|-.
T Consensus       939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            432                     234556888899999999999999987766543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=91.05  E-value=1.4  Score=39.20  Aligned_cols=87  Identities=20%  Similarity=0.046  Sum_probs=73.3

Q ss_pred             cCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHH
Q 041967           98 LNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG---QWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRR  173 (227)
Q Consensus        98 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~  173 (227)
                      .+....++.+|.+++..-|.....|.+++.++.+.+   +.-.|+..+..+++++|.. ..+-.|.+.+..++...+|..
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~  466 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS  466 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence            344678999999999999999999999998888765   4556888899999999987 778899999999999999999


Q ss_pred             HHHHHHHHHHh
Q 041967          174 KYERLRKEREL  184 (227)
Q Consensus       174 ~~~~~~~~~~~  184 (227)
                      ....+....+.
T Consensus       467 ~~~alq~~~Pt  477 (758)
T KOG1310|consen  467 CHWALQMSFPT  477 (758)
T ss_pred             hHHHHhhcCch
Confidence            88777666554

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=91.01  E-value=2.3  Score=27.72  Aligned_cols=54  Identities=17%  Similarity=0.152  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHcCCHHHHHHH
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI---RGMARARLGQWEEAAND  141 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---la~~~~~~g~~~~A~~~  141 (227)
                      ....|.-++...+.++|+..+.++++..++.+..+..   +..+|...|+|.+.+.+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666677788888888888888887776654444   45567777777776654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=90.56  E-value=0.89  Score=23.20  Aligned_cols=27  Identities=26%  Similarity=0.203  Sum_probs=15.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           66 KLEDAIGQLTEAIMLNPTSAILYAARA   92 (227)
Q Consensus        66 ~~~~A~~~~~~al~~~p~~~~~~~~~g   92 (227)
                      +++.|...|++++...|.++..|...+
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            455555566666665565555555444

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.47  E-value=4.1  Score=31.69  Aligned_cols=53  Identities=26%  Similarity=0.211  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHH
Q 041967           85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPD----SAKGYKIRGMARARLGQWEEA  138 (227)
Q Consensus        85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A  138 (227)
                      +...+.+|..|. ..+.++++..+.+++++.+.    ++.++..++.++..+|+++.|
T Consensus       141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            444444444432 33445555555555554322    244555555555555555544

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=90.16  E-value=5.7  Score=38.97  Aligned_cols=128  Identities=16%  Similarity=0.119  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC----
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIML--------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN----  115 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----  115 (227)
                      +..+..+..++..+...+++++|+..-.++.-+        .|.....|.+++...+..++...|+..+.++..+.    
T Consensus       970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen  970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred             hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence            356778899999999999999999988776633        23456789999999999999999999999887652    


Q ss_pred             ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----h----HHHHHHHHHHHhhhhHHHHHHHH
Q 041967          116 ----PDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD-----E----EIGMALKKVEPNARRIQEHRRKY  175 (227)
Q Consensus       116 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-----~----~~~~~l~~~~~~~~~~~~a~~~~  175 (227)
                          |.-.-...+++.++...++++.|+.+++.|+.....     .    .....++++....+++..+....
T Consensus      1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred             CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence                333445677888999999999999999999986432     1    12234555555555555544444

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=90.00  E-value=0.62  Score=40.19  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q 041967          121 GYKIRGMARARLGQWEEAANDLHVA  145 (227)
Q Consensus       121 ~~~~la~~~~~~g~~~~A~~~~~~a  145 (227)
                      .+|..|.+|..+++|.+|++.|...
T Consensus       166 ~~YyvGFaylMlrRY~DAir~f~~i  190 (404)
T PF10255_consen  166 TYYYVGFAYLMLRRYADAIRTFSQI  190 (404)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555544433

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=89.87  E-value=4.2  Score=32.69  Aligned_cols=78  Identities=17%  Similarity=0.006  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCH
Q 041967           68 EDAIGQLTEAIMLNPT------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPD--S----AKGYKIRGMARARLGQW  135 (227)
Q Consensus        68 ~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~  135 (227)
                      ...+.++.+|+.....      .......+|.-|+..|++++|+..|+.+......  +    ......+..|+..+|+.
T Consensus       155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~  234 (247)
T PF11817_consen  155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV  234 (247)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence            3445555555553322      1345667899999999999999999998765432  2    34667788888999988


Q ss_pred             HHHHHHHHHH
Q 041967          136 EEAANDLHVA  145 (227)
Q Consensus       136 ~~A~~~~~~a  145 (227)
                      +..+...-+.
T Consensus       235 ~~~l~~~leL  244 (247)
T PF11817_consen  235 EDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHH
Confidence            8877665444

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.86  E-value=1.6  Score=33.95  Aligned_cols=55  Identities=22%  Similarity=0.216  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCcHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT----SAILYAARAGVYVKLNKPNAAI  105 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~g~~~~~~~~~~~A~  105 (227)
                      .++..+.+|..|. +.+.++|+.+|.++|++.+.    ++..+..++.++++.|+++.|-
T Consensus       140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            5677788877665 78999999999999997644    5899999999999999999874

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.79  E-value=3.6  Score=32.58  Aligned_cols=63  Identities=19%  Similarity=0.202  Sum_probs=54.7

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH
Q 041967           58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK  120 (227)
Q Consensus        58 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  120 (227)
                      ...+++.+..++|+.....-++.+|.+......+-..++-.|++++|...++-+-.+.|.+..
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            456788899999999999999999998887777778888899999999999999999998764

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=89.37  E-value=4.2  Score=39.81  Aligned_cols=132  Identities=17%  Similarity=0.122  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC------
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIG------QLTEA-IMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN------  115 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------  115 (227)
                      ..+...+..|...+..+.|.+|.+      ++... -.+.|..+..|..++..+.+.++++.|+....++..+.      
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence            356778888999999999998888      44422 23467778899999999999999999999998876553      


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC---Ch-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          116 --PDSAKGYKIRGMARARLGQWEEAANDLHVASKL-----DY---DE-EIGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       116 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                        |+....|.+++...+..+....|+..+.++..+     .|   .- .+..+++.+....++++.+....+.+.+
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence              334568888999999999988999988888776     23   22 2234666666667777777777766654

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.33  E-value=2.6  Score=34.72  Aligned_cols=61  Identities=20%  Similarity=0.137  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVAL  112 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  112 (227)
                      ..+...+..|...|.+.+|+.+.++++.++|-+...+..+-.++...|+--.++..|++.-
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            4456677788899999999999999999999999999999999999999888888887653

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.19  E-value=4.1  Score=32.24  Aligned_cols=60  Identities=23%  Similarity=0.262  Sum_probs=54.8

Q ss_pred             HHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 041967           94 VYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEE  153 (227)
Q Consensus        94 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~  153 (227)
                      -+++-+...+|+...+.-++.+|.+......+-.+|+-.|++..|...++-+-++.|...
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            455778899999999999999999999999999999999999999999999999999873

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.17  E-value=13  Score=32.92  Aligned_cols=92  Identities=15%  Similarity=-0.021  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCCH-
Q 041967           50 AANMTKLKAVDLIS-EGKLEDAIGQLTEAIMLN---PTS----AILYAARAGVYVKLN-KPNAAIRDAYVALETNPDSA-  119 (227)
Q Consensus        50 ~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~---p~~----~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~-  119 (227)
                      .+.....+|..++. ..+++.|...+++|..+.   |+.    -.++..++.+|.+.. .+..+...++++|++...++ 
T Consensus        45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~  124 (629)
T KOG2300|consen   45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPY  124 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCch
Confidence            34455555554443 456666777777766543   222    134555666666655 56666666777776654443 


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHH
Q 041967          120 ---KGYKIRGMARARLGQWEEAAND  141 (227)
Q Consensus       120 ---~~~~~la~~~~~~g~~~~A~~~  141 (227)
                         +..+.++.++.-..++..|...
T Consensus       125 wsckllfQLaql~~idkD~~sA~el  149 (629)
T KOG2300|consen  125 WSCKLLFQLAQLHIIDKDFPSALEL  149 (629)
T ss_pred             hhHHHHHHHHHHHhhhccchhHHHH
Confidence               3455566666666666666654

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=89.07  E-value=6  Score=38.11  Aligned_cols=100  Identities=14%  Similarity=0.103  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHH-
Q 041967           50 AANMTKLKAVDLISE-------GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKG-  121 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~-------~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-  121 (227)
                      ..++.+..|.+.+.+       ..+.+|+..|++. .-.|.-|-=|...|.+|..+|++++-++++.-|++..|.+|.. 
T Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (932)
T PRK13184        511 GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS  589 (932)
T ss_pred             chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence            346677777776653       2477888888773 4456667778999999999999999999999999999998753 


Q ss_pred             ------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          122 ------YKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       122 ------~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                            -+++-.+.....  ..|.....-++.+-|..
T Consensus       590 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  624 (932)
T PRK13184        590 RLRDHLVYRLHESLYKHR--REALVFMLLALWIAPEK  624 (932)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCccc
Confidence                  334444433332  34667777778888865

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.06  E-value=3.6  Score=35.44  Aligned_cols=95  Identities=16%  Similarity=0.051  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC--------CCCHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT---SAILYAARAGVYVKLNKPNAAIRDAYVALETN--------PDSAK  120 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~  120 (227)
                      .++..+|.-|..-|+++.|+++|.++-...-.   ....+.+.-.+-..+|+|-....+..+|...-        .-.++
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k  230 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK  230 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence            56788999999999999999999997766543   24567778888888999998888888887652        01234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041967          121 GYKIRGMARARLGQWEEAANDLHVAS  146 (227)
Q Consensus       121 ~~~~la~~~~~~g~~~~A~~~~~~a~  146 (227)
                      ....-|.+...+++|+.|.++|-.+.
T Consensus       231 l~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  231 LKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            56667888888889999998887553

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=88.61  E-value=8.8  Score=35.61  Aligned_cols=84  Identities=10%  Similarity=-0.009  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .-.++.++|..+.....|++|.++|...-.        .-+...|+++..+|.+    ++.....-|++.+.+-.+|.++
T Consensus       795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf  862 (1189)
T KOG2041|consen  795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMF  862 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHH
Confidence            346788888888888889999888877532        3446778877777776    5555555689999999999999


Q ss_pred             HHcCCHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVA  145 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a  145 (227)
                      ...|.-++|++.|.+.
T Consensus       863 ~svGMC~qAV~a~Lr~  878 (1189)
T KOG2041|consen  863 TSVGMCDQAVEAYLRR  878 (1189)
T ss_pred             HhhchHHHHHHHHHhc
Confidence            9999999999888764

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=88.55  E-value=1.6  Score=22.15  Aligned_cols=30  Identities=20%  Similarity=-0.007  Sum_probs=22.0

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           99 NKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        99 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      |+++.|...|++++...|..+..|..++..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            456777888888888888777777766543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=88.47  E-value=19  Score=32.60  Aligned_cols=115  Identities=11%  Similarity=0.010  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 041967           68 EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR-GMARARLGQWEEAANDLHVAS  146 (227)
Q Consensus        68 ~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~a~  146 (227)
                      +.+...|...|...|.+..+|...|....+.|..+.+...|++++.--|.....|..+ +.+-...|+.+.-...|++|.
T Consensus        62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~  141 (577)
T KOG1258|consen   62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK  141 (577)
T ss_pred             HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            5566678888889999999999999999999999999999999999989777776653 455556777777777888888


Q ss_pred             hcCCCh----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          147 KLDYDE----EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       147 ~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      .....+    ..|..+-+.....+.+.....-|++.....
T Consensus       142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP  181 (577)
T KOG1258|consen  142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP  181 (577)
T ss_pred             HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh
Confidence            876553    445555444455666666666666665443

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=88.34  E-value=2.2  Score=31.28  Aligned_cols=51  Identities=18%  Similarity=0.070  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 041967           85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW  135 (227)
Q Consensus        85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  135 (227)
                      ......++...+..|++.-|...++.++..+|++..+...++.++..+|..
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            566777888888899999999999999999999999999999988877754

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=88.33  E-value=19  Score=32.45  Aligned_cols=118  Identities=16%  Similarity=-0.007  Sum_probs=83.5

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 041967           56 LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGV-YVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ  134 (227)
Q Consensus        56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  134 (227)
                      ..-+...+..=...|...|.+|-+..-...+.+..-|.. |+..++..-|...|+-.++..++.+..-.....-+..+|+
T Consensus       371 ~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd  450 (656)
T KOG1914|consen  371 QYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND  450 (656)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc
Confidence            333444444456667777777765433333455444444 3456899999999999999999999988888889999999


Q ss_pred             HHHHHHHHHHHHhc--CCCh--HHHHHHHHHHHhhhhHHHHHH
Q 041967          135 WEEAANDLHVASKL--DYDE--EIGMALKKVEPNARRIQEHRR  173 (227)
Q Consensus       135 ~~~A~~~~~~a~~~--~p~~--~~~~~l~~~~~~~~~~~~a~~  173 (227)
                      -..|...|++++..  .|+.  ++|...-....+.|+..-..+
T Consensus       451 d~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~  493 (656)
T KOG1914|consen  451 DNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK  493 (656)
T ss_pred             chhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence            99999999999987  4443  667766666666776654443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=88.22  E-value=10  Score=30.90  Aligned_cols=89  Identities=15%  Similarity=0.171  Sum_probs=71.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 041967           64 EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPN-AAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDL  142 (227)
Q Consensus        64 ~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  142 (227)
                      ..+..+-+.++.+.+.-+|.+...|.-+-.+.-..|++. .-+..+..++..+..|-.+|..+--+....+.++.-+.+.
T Consensus        91 ~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~  170 (318)
T KOG0530|consen   91 MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYA  170 (318)
T ss_pred             HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence            346778888899999999999888887777777778877 7888888889888888888888888888888888877777


Q ss_pred             HHHHhcCCCh
Q 041967          143 HVASKLDYDE  152 (227)
Q Consensus       143 ~~a~~~~p~~  152 (227)
                      ...+..+-.|
T Consensus       171 ~~Lle~Di~N  180 (318)
T KOG0530|consen  171 DELLEEDIRN  180 (318)
T ss_pred             HHHHHHhhhc
Confidence            7777766544

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=87.57  E-value=11  Score=32.50  Aligned_cols=101  Identities=15%  Similarity=0.038  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH----hCCCCHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLN-----P-TSAILYAARAGVYVKLNKPNAAIRDAYVALE----TNPDSAKG  121 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~  121 (227)
                      ..|+-....+-..++...-...+...+...     . .-+...+.+-.+|+..+.|+.|-....+..-    .+..+...
T Consensus       170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY  249 (493)
T KOG2581|consen  170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARY  249 (493)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHH
Confidence            345555555555566444444444433321     1 1134566667788888888888776665541    11244678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          122 YKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       122 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      .|.+|.+-.-+++|..|.++|-.|+...|..
T Consensus       250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            8899999999999999999999999999975

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.54  E-value=3.7  Score=23.52  Aligned_cols=25  Identities=20%  Similarity=0.056  Sum_probs=14.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q 041967          123 KIRGMARARLGQWEEAANDLHVASK  147 (227)
Q Consensus       123 ~~la~~~~~~g~~~~A~~~~~~a~~  147 (227)
                      +.+|.+|..+|+++.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3455666666666666666665553

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=87.48  E-value=14  Score=30.05  Aligned_cols=93  Identities=18%  Similarity=0.042  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHC-----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCCCCHHHH
Q 041967           54 TKLKAVDLISE-----G--KLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----LNKPNAAIRDAYVALETNPDSAKGY  122 (227)
Q Consensus        54 ~~~~g~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~  122 (227)
                      .+.+|..+..-     -  +...|+..|.++-...  ++.+.+.+|.+|..    ..++.+|+.+|.++.....  ..+.
T Consensus       151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~  226 (292)
T COG0790         151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAAC  226 (292)
T ss_pred             HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence            56666666554     1  3347999999987765  78899999988866    3478999999999999877  8888


Q ss_pred             HHHHHHHHHcC---------------CHHHHHHHHHHHHhcCCC
Q 041967          123 KIRGMARARLG---------------QWEEAANDLHVASKLDYD  151 (227)
Q Consensus       123 ~~la~~~~~~g---------------~~~~A~~~~~~a~~~~p~  151 (227)
                      +.++ ++...|               +...|..++..+....+.
T Consensus       227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  269 (292)
T COG0790         227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD  269 (292)
T ss_pred             HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence            9999 777666               555666666665555443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=87.06  E-value=5  Score=34.84  Aligned_cols=84  Identities=19%  Similarity=0.001  Sum_probs=57.2

Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHhCC--------CCH--------H--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-
Q 041967           92 AGVYVKLNKPNAAIRDAYVALETNP--------DSA--------K--GYKIRGMARARLGQWEEAANDLHVASKLDYDE-  152 (227)
Q Consensus        92 g~~~~~~~~~~~A~~~~~~al~~~p--------~~~--------~--~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-  152 (227)
                      |...++++.|..|.--|..++++..        ..+        .  .--.+..||..+++.+-|+.+..+.+-++|.. 
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            3344455666666655555555431        111        1  22347899999999999999999999999987 


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHH
Q 041967          153 EIGMALKKVEPNARRIQEHRRKY  175 (227)
Q Consensus       153 ~~~~~l~~~~~~~~~~~~a~~~~  175 (227)
                      .-...-+.+..++.+|.+|.+.+
T Consensus       263 rnHLrqAavfR~LeRy~eAarSa  285 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSA  285 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666777777777776655

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=86.75  E-value=5.3  Score=32.07  Aligned_cols=61  Identities=11%  Similarity=0.035  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVAL  112 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al  112 (227)
                      ......|..++..|+|++|+.+|+.+.......      ..++..+..|+...|+.+..+..+-+.+
T Consensus       179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            345689999999999999999999997654432      4567788899999999998887765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=86.51  E-value=9.7  Score=27.17  Aligned_cols=64  Identities=17%  Similarity=0.142  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------hCCCC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIM-------LNPTS----AILYAARAGVYVKLNKPNAAIRDAYVALET  114 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~-------~~p~~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  114 (227)
                      +-.+-.++-.+...|+|++++.....+|.       ++.+.    ..+.+++|..+-.+|..++|+..|+++-+.
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            44566778888999999998888877774       34443    346788999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.15  E-value=12  Score=34.39  Aligned_cols=105  Identities=14%  Similarity=0.088  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----C---CCC-------------------HHHHHHHHHHHHHcCCcHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML----N---PTS-------------------AILYAARAGVYVKLNKPNA  103 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~---p~~-------------------~~~~~~~g~~~~~~~~~~~  103 (227)
                      .+-.++--|...+..+..+.|.+++.++++.    .   +..                   ....+..+.+.+-.+++..
T Consensus       300 ~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~  379 (608)
T PF10345_consen  300 YALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSK  379 (608)
T ss_pred             HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence            3566777888888889888888888888753    1   110                   2345567888888999999


Q ss_pred             HHHHHHHHHHhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCChHH
Q 041967          104 AIRDAYVALETN---PD------SAKGYKIRGMARARLGQWEEAANDLH--------VASKLDYDEEI  154 (227)
Q Consensus       104 A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~--------~a~~~~p~~~~  154 (227)
                      |......+....   |.      .+..++..|..+-..|+.+.|...|.        .+....+.++.
T Consensus       380 a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El  447 (608)
T PF10345_consen  380 ATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFREL  447 (608)
T ss_pred             HHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHH
Confidence            999998777653   22      36688899999999999999999998        56666666544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.86  E-value=32  Score=33.64  Aligned_cols=61  Identities=16%  Similarity=0.139  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET  114 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  114 (227)
                      +.+..|..+|..-+..|...+|++.|-+|     +++..|........+.|.|+.-+.++..+-+.
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            35678999999999999999999999765     56788888888888999999999888887653

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=85.77  E-value=11  Score=27.00  Aligned_cols=98  Identities=15%  Similarity=0.107  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHH----HHH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---------------AILYAARAGVYVKLNKPNAAIRDAYV----ALE  113 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~g~~~~~~~~~~~A~~~~~~----al~  113 (227)
                      .+...|+..++.+++-.++-.|++|+.+...-               ....-|+|..+..+|+.+-.+.+++-    ++.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            46678999999999999999999999753221               23456889999999999988888864    456


Q ss_pred             hCCCCH----HH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 041967          114 TNPDSA----KG-YKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKK  160 (227)
Q Consensus       114 ~~p~~~----~~-~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~  160 (227)
                      +-|.-+    .+ ...+|.|       ..|+   -..++..|+..+...+..
T Consensus        83 LiPQCp~~~C~afi~sLGCC-------k~AL---l~F~KRHPNP~iA~~vq~  124 (140)
T PF10952_consen   83 LIPQCPNTECEAFIDSLGCC-------KKAL---LDFMKRHPNPEIARLVQH  124 (140)
T ss_pred             hccCCCCcchHHHHHhhhcc-------HHHH---HHHHHhCCCHHHHHHHHh
Confidence            666543    23 3334544       3333   334567787766655543

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.45  E-value=2.1  Score=24.49  Aligned_cols=27  Identities=15%  Similarity=0.096  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVALET  114 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al~~  114 (227)
                      .+.+|..|..+|+++.|...++.++..
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            357899999999999999999999853

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.35  E-value=2.9  Score=27.00  Aligned_cols=30  Identities=37%  Similarity=0.381  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM   79 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~   79 (227)
                      .+..+...|..+=+.|++.+|+.+|+++++
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe   34 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIE   34 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            355566666777777777777777666553

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=85.29  E-value=29  Score=31.60  Aligned_cols=82  Identities=16%  Similarity=0.101  Sum_probs=65.6

Q ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 041967           60 DLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAA  139 (227)
Q Consensus        60 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  139 (227)
                      ++.+++..+++....+.-+.....++...+..+..+-..++.++|-.+|++.+..+|+  .+++.++.-+.+.|-..+|.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   94 (578)
T PRK15490         17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ   94 (578)
T ss_pred             HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence            3445556777777776655555556777888899999999999999999999999999  67888889999999888887


Q ss_pred             HHHH
Q 041967          140 NDLH  143 (227)
Q Consensus       140 ~~~~  143 (227)
                      ..++
T Consensus        95 ~~~~   98 (578)
T PRK15490         95 LILK   98 (578)
T ss_pred             HHHH
Confidence            7766

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=84.04  E-value=2.2  Score=36.88  Aligned_cols=61  Identities=21%  Similarity=0.017  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT---------SAILYAARAGVYVKLNKPNAAIRDAYVALE  113 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  113 (227)
                      -.+..+..++.-.|||..|++.++. |+++..         ....++..|-+|+.+++|..|+..|..++.
T Consensus       123 FSligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  123 FSLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677888889999999998765 343332         245788899999999999999999998874

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=83.94  E-value=0.91  Score=38.14  Aligned_cols=77  Identities=16%  Similarity=0.020  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ...+.+.+.++.+.+..|+..-..++..++....+++.++..++...++++|++++..+....|.+....-.+..+-
T Consensus       277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~  353 (372)
T KOG0546|consen  277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR  353 (372)
T ss_pred             cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence            44556777788888899988888888888888889999999999999999999999999999999986655444433

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=83.06  E-value=2.5  Score=33.58  Aligned_cols=103  Identities=18%  Similarity=0.108  Sum_probs=59.0

Q ss_pred             HHCCCHHHHHHHHHHHHHhC---CCC---------HHHHHHHHHHHHHcCC-cHHH-HHHHHHHHHhC--CCCH--HHHH
Q 041967           62 ISEGKLEDAIGQLTEAIMLN---PTS---------AILYAARAGVYVKLNK-PNAA-IRDAYVALETN--PDSA--KGYK  123 (227)
Q Consensus        62 ~~~~~~~~A~~~~~~al~~~---p~~---------~~~~~~~g~~~~~~~~-~~~A-~~~~~~al~~~--p~~~--~~~~  123 (227)
                      +--|+|+.|+....-||..+   |+.         ++-...-+......|+ ++.. ...+..+..-.  |+..  +.|-
T Consensus        94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K  173 (230)
T PHA02537         94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK  173 (230)
T ss_pred             eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            34688999999999999864   321         2223333444455555 2222 22222222111  2333  3444


Q ss_pred             HHHHHHH---------HcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 041967          124 IRGMARA---------RLGQWEEAANDLHVASKLDYDEEIGMALKKVEPN  164 (227)
Q Consensus       124 ~la~~~~---------~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~  164 (227)
                      ..|..+.         ..+....|+.+|++|+.++|.-.+...+..+...
T Consensus       174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~  223 (230)
T PHA02537        174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERR  223 (230)
T ss_pred             HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence            5676663         4457788999999999999886555555544433

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=82.63  E-value=13  Score=25.64  Aligned_cols=52  Identities=17%  Similarity=0.134  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK  100 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~  100 (227)
                      ..+......|...+..|+|..|.+...++-+..+..+-.|..-+.+...+||
T Consensus        57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd  108 (108)
T PF07219_consen   57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD  108 (108)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence            4556777788888888888888888888866654444445444555555543

These are membrane protein involved in a late step of protoheme IX synthesis [].

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=82.59  E-value=40  Score=31.00  Aligned_cols=100  Identities=19%  Similarity=0.093  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC----
Q 041967           49 DAANMTKLKAVDLI-SEGKLEDAIGQLTEAIMLNPT--SA----ILYAARAGVYVKLNKPNAAIRDAYVALETNPD----  117 (227)
Q Consensus        49 ~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~--~~----~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----  117 (227)
                      ..+...+.+|.+++ .-.+++.|..++.+++.+...  ..    .+.+.++.++.+.+... |+..++++|+....    
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~  135 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS  135 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence            46788999999999 557999999999999887643  22    34456688887777766 99999999887655    


Q ss_pred             CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcC
Q 041967          118 SAKGYKIRGMA--RARLGQWEEAANDLHVASKLD  149 (227)
Q Consensus       118 ~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~~~  149 (227)
                      .+...|++-.+  +...+++..|+..++......
T Consensus       136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a  169 (608)
T PF10345_consen  136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA  169 (608)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence            33444444322  222379999999999888876

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=82.41  E-value=13  Score=28.49  Aligned_cols=51  Identities=31%  Similarity=0.206  Sum_probs=42.3

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          101 PNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       101 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ....++..++.++..| ++.++.+++.++...|+.++|.....++..+.|.+
T Consensus       127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence            3345566677777777 67788999999999999999999999999999954

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=82.39  E-value=5.1  Score=25.10  Aligned_cols=30  Identities=33%  Similarity=0.260  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM   79 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~   79 (227)
                      .+..+...|..+=..|+|++|+.+|.+++.
T Consensus         4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen    4 KAIELIKKAVEADEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            355666777777777888888888777764

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.16  E-value=34  Score=30.02  Aligned_cols=126  Identities=17%  Similarity=0.045  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHcCCcH----------HHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNP-----------TSAILYAARAGVYVKLNKPN----------AAIRDA  108 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------~~~~~~~~~g~~~~~~~~~~----------~A~~~~  108 (227)
                      .+..+..+|..++....|.+|+-++-.|=+...           +.+-.-..+.+||+.+.+..          .|...|
T Consensus       162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf  241 (568)
T KOG2561|consen  162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF  241 (568)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence            566789999999999999999998876654322           22344455678888876632          233333


Q ss_pred             HHHH--------HhC-CCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----ChHHHH-----------HH
Q 041967          109 YVAL--------ETN-PDSAK------GYKIRGMARARLGQWEEAANDLHVASKLDY----DEEIGM-----------AL  158 (227)
Q Consensus       109 ~~al--------~~~-p~~~~------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p----~~~~~~-----------~l  158 (227)
                      .++.        .+. +..+.      .+..-|.+.+.+|+-++|..+++.+...-.    .++.|.           .-
T Consensus       242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~mGfeesdaR  321 (568)
T KOG2561|consen  242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGMGFEESDAR  321 (568)
T ss_pred             hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHcCCCchHHH
Confidence            3321        121 23332      334459999999999999999998765422    122221           11


Q ss_pred             HHHHHhhhhHHHHHHHH
Q 041967          159 KKVEPNARRIQEHRRKY  175 (227)
Q Consensus       159 ~~~~~~~~~~~~a~~~~  175 (227)
                      -.+..+.|+...|...+
T Consensus       322 laLRsc~g~Vd~AvqfI  338 (568)
T KOG2561|consen  322 LALRSCNGDVDSAVQFI  338 (568)
T ss_pred             HHHHhccccHHHHHHHH
Confidence            22345667777777666

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.51  E-value=5.7  Score=25.73  Aligned_cols=31  Identities=29%  Similarity=0.170  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML   80 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~   80 (227)
                      .+..+...|..+=+.|+|++|+.+|..+++.
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4566777777777888888888888887753

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=80.31  E-value=6  Score=35.02  Aligned_cols=97  Identities=13%  Similarity=0.111  Sum_probs=74.6

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 041967           56 LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW  135 (227)
Q Consensus        56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  135 (227)
                      ..+...-..|+|+.|+..+.-+-..-.....+.--+-..+...|.++.|.......+.-.-..+++...-+..-..+|-+
T Consensus       328 l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~  407 (831)
T PRK15180        328 LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLF  407 (831)
T ss_pred             HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHH
Confidence            35566667799999988876554432222233334556777899999999999999988878888877778888889999


Q ss_pred             HHHHHHHHHHHhcCCCh
Q 041967          136 EEAANDLHVASKLDYDE  152 (227)
Q Consensus       136 ~~A~~~~~~a~~~~p~~  152 (227)
                      +++..++++.+.++|..
T Consensus       408 d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        408 DKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHHHHHHhccCChh
Confidence            99999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	227
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		7e-07
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		1e-06
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		2e-06
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		3e-06
1wao_1	477	Pp5 Structure Length = 477		4e-06
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		2e-05
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		3e-05
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		5e-05
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		7e-04

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 52  NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVA 111
           N  K K    +S G ++DA+   +EAI L+P + +LY+ R+  Y K      A  D    
Sbjct: 5   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64
Query: 112 LETNPDSAKGYKIRGMARARLGQWEEA 138
           ++  PD  KGY  +  A   L ++EEA
Sbjct: 65  VDLKPDWGKGYSRKAAALEFLNRFEEA 91

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 46/101 (45%)
Query: 49  DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDA 108
           D A M K K  +   +G    A+   TEAI  NP  A LY+ RA  Y KL +   A++D 
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 109 YVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
              ++  P   KGY  +  A   +  + +A +    A  LD
Sbjct: 74  EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 37  GDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYV 96
            D +++  EE++  AN       D       E+AI   ++AI LNP++AI Y  R+  Y+
Sbjct: 6   ADGALKRAEELKTQAN-------DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL 58
Query: 97  KLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL 148
           +      A+ DA  A+E +    KGY  R  +   LG++  A  D     K+
Sbjct: 59  RTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 55  KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114
           K +A D       E+AI   ++AI LNP++AI Y  R+  Y++      A+ DA  A+E 
Sbjct: 10  KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 115 NPDSAKGYKIRGMARARLGQWEEAANDLHVASKL 148
           +    KGY  R  +   LG++  A  D     K+
Sbjct: 70  DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 103

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 66  KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125
           K  +A      AI  NP  A+ Y  RA  Y+K+ +P  A+ D   ALE +  S K +   
Sbjct: 19  KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 126 GMARARLGQWEEAANDLHVA------SKLDYDEEIGMALK 159
           G  +  +  ++EA  +L  A       +L++ ++I  AL+
Sbjct: 79  GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 66  KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR 125
           K  +A      AI  NP  A+ Y  RA  Y+K+ +P  A+ D   ALE +  S K +   
Sbjct: 24  KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 126 GMARARLGQWEEAANDLHVA------SKLDYDEEIGMALK 159
           G  +  +  ++EA  +L  A       +L++ ++I  AL+
Sbjct: 84  GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 123

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 67  LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126
            E A+    +AI LNP +A+ +  RA  Y KL     A++D   A+  +P  +K Y   G
Sbjct: 28  FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87
Query: 127 MARARLGQWEEAANDLHVASKLDYDEE 153
           +A + L +  EA      A +LD D E
Sbjct: 88  LALSSLNKHVEAVAYYKKALELDPDNE 114

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
           L++ G+L DA+ Q   A+  +P + I Y  RA V++ + K  AA+ D    ++   D   
Sbjct: 36  LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA 95
Query: 121 GYKIRGMARARLGQWEEAANDL 142
               RG    + G+ +EA +D 
Sbjct: 96  ARLQRGHLLLKQGKLDEAEDDF 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	7e-27
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-23
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-22
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-22
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-05
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-21
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-20
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-20
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-20
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-04
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	9e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-08
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-14
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-14
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-14
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-12
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-11
2kat_A	115	Uncharacterized protein; NESG, structure, structur	8e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-11
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	5e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	7e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-07
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	7e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	9e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	6e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	5e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	6e-04

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  103 bits (258), Expect = 7e-27
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 6/168 (3%)

Query: 49  DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDA 108
            +A   K +   L    K  +A      AI  NP  A+ Y  RA  Y+K+ +P  A+ D 
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61

Query: 109 YVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD------YDEEIGMALKKVE 162
             ALE +  S K +   G  +  +  ++EA  +L  A  L       + ++I  AL+  +
Sbjct: 62  RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 121

Query: 163 PNARRIQEHRRKYERLRKERELKNFERERQRKQAGADREALSGLRDGM 210
                  E RR ++       L       + ++    +    G  D  
Sbjct: 122 KKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDG 169

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 90.5 bits (225), Expect = 2e-23
 Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 6/135 (4%)

Query: 45  EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAA 104
                +A   K +   L    K  +A      AI  NP  A+ Y  RA  Y+K+ +P  A
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62

Query: 105 IRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD------YDEEIGMAL 158
           + D   ALE +  S K +   G  +  +  ++EA  +L  A  L       + ++I  AL
Sbjct: 63  LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 122

Query: 159 KKVEPNARRIQEHRR 173
           +  +       E RR
Sbjct: 123 RIAKKKRWNSIEERR 137

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 86.9 bits (216), Expect = 4e-22
 Identities = 27/122 (22%), Positives = 52/122 (42%)

Query: 51  ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYV 110
           A   +L+  +  ++    +A+   TE I   P  A  Y+ RA    KL     AI D   
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 111 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQE 170
           A+E +P+  + Y  +  A+  + ++  A   L  A   D +   G + ++++    +  +
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123

Query: 171 HR 172
            R
Sbjct: 124 QR 125

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 87.8 bits (218), Expect = 4e-22
 Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 1/150 (0%)

Query: 42  EVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKP 101
              +     A   K +A D       E+AI   ++AI LNP++AI Y  R+  Y++    
Sbjct: 4   PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 63

Query: 102 NAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD-YDEEIGMALKK 160
             A+ DA  A+E +    KGY  R  +   LG++  A  D     K+  +D++  M  ++
Sbjct: 64  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123

Query: 161 VEPNARRIQEHRRKYERLRKERELKNFERE 190
                ++    R       K   + + + E
Sbjct: 124 CNKIVKQKAFERAIAGDEHKRSVVDSLDIE 153

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 87.9 bits (218), Expect = 4e-22
 Identities = 26/133 (19%), Positives = 54/133 (40%)

Query: 44  TEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNA 103
           +      ++  K +    ++  +   AI   T+A+ + P + I  + RA  Y    +   
Sbjct: 4   SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEK 63

Query: 104 AIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEP 163
           A  DA +A   +P  +K +   G+AR  +  ++ A        + + +       + +E 
Sbjct: 64  AAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123

Query: 164 NARRIQEHRRKYE 176
             R+I+E  R  E
Sbjct: 124 TKRKIEEANRGAE 136

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 86.9 bits (216), Expect = 4e-22
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 42  EVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKP 101
             +EE    A   K +  + +     E A+    +AI LNP +A+ +  RA  Y KL   
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62

Query: 102 NAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD-----YDEEIGM 156
             A++D   A+  +P  +K Y   G+A + L +  EA      A +LD     Y   + +
Sbjct: 63  AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122

Query: 157 ALKKVE 162
           A  K+ 
Sbjct: 123 AELKLR 128

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 17/70 (24%), Positives = 27/70 (38%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
           G    A+     AI ++P  +  Y         LNK   A+     ALE +PD+      
Sbjct: 60  GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSN 119

Query: 125 RGMARARLGQ 134
             +A  +L +
Sbjct: 120 LKIAELKLRE 129

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 83.8 bits (208), Expect = 4e-21
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 49  DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDA 108
           +  N  K K    +S G ++DA+   +EAI L+P + +LY+ R+  Y K      A  D 
Sbjct: 2   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61

Query: 109 YVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD-YDEEIGMALKKVE 162
              ++  PD  KGY  +  A   L ++EEA        K +  + ++   L+ +E
Sbjct: 62  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 83.0 bits (206), Expect = 1e-20
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 1/116 (0%)

Query: 48  RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRD 107
            + A   K K  +   +G    A+    EA+  +P +AILY+ RA    KL +   A+ D
Sbjct: 10  PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDD 69

Query: 108 AYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD-YDEEIGMALKKVE 162
               +  +    KGY  +      + +W +A      A ++D  +EE    ++   
Sbjct: 70  CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 83.1 bits (206), Expect = 1e-20
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 7/126 (5%)

Query: 44  TEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNA 103
           +  M DAA   K        +   E A     +AI L+P++   Y  +A VY +  K   
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60

Query: 104 AIRDAYVALETNPDS-------AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGM 156
            ++    A+E   ++       AK     G A  +      A    H +     D E+  
Sbjct: 61  CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120

Query: 157 ALKKVE 162
            +K++E
Sbjct: 121 KVKELE 126

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 82.8 bits (205), Expect = 2e-20
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 37  GDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAG 93
           G P          +    + +  +L   G    A+   T+A+ L+ T    A+L+  RA 
Sbjct: 14  GTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAA 73

Query: 94  VYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD-YDE 152
            ++KL   + A  +A  A+E +    K    R  A  +LG+ ++A  DL     L+  ++
Sbjct: 74  CHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133

Query: 153 EIGMALKKVE 162
               AL+ + 
Sbjct: 134 VFQEALRNIS 143

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 80.4 bits (199), Expect = 1e-19
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 36  MGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVY 95
           MG      +    D A M K K  +   +G    A+   TEAI  NP  A LY+ RA  Y
Sbjct: 1   MGHHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACY 60

Query: 96  VKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD-YDEEI 154
            KL +   A++D    ++  P   KGY  +  A   +  + +A +    A  LD   +E 
Sbjct: 61  TKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

Query: 155 GMALKKVE 162
               ++  
Sbjct: 121 ADGYQRCM 128

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.9 bits (200), Expect = 6e-18
 Identities = 28/131 (21%), Positives = 51/131 (38%)

Query: 55  KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114
                 L++ G+L DA+ Q   A+  +P + I Y  RA V++ + K  AA+ D    ++ 
Sbjct: 30  LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89

Query: 115 NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRK 174
             D       RG    + G+ +EA +D     K +  E      +     +  +Q  R +
Sbjct: 90  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149

Query: 175 YERLRKERELK 185
                   +  
Sbjct: 150 ALNAFGSGDYT 160

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 79.3 bits (196), Expect = 2e-17
 Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 17/163 (10%)

Query: 50  AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA----ILYAARAGVYVKLNKPNAAI 105
             N     A +LI +G+  DA  +    +   P+ A             + K  KP  AI
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315

Query: 106 RDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNA 165
           R     L+  PD+    K R  A      ++EA  D   A + +              N 
Sbjct: 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-------------END 362

Query: 166 RRIQEHRRKYERLRKERELKNFERERQRKQAGADREALSGLRD 208
           ++I+E   K +RL K+ + +++ +    K+    +E +   R 
Sbjct: 363 QQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 75.5 bits (186), Expect = 5e-16
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 6/132 (4%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           +A++    G    AI  L + + +    A L   RA  ++K  +P  AI D   A +   
Sbjct: 149 QALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN 208

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYE 176
           D+ + +        +LG  E + +++    KLD D       K+   + +++++  +  E
Sbjct: 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD------HKRCFAHYKQVKKLNKLIE 262

Query: 177 RLRKERELKNFE 188
              +      + 
Sbjct: 263 SAEELIRDGRYT 274

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
            K  +AI   +E + + P +      RA  Y+     + AI+D   A E N +  +  + 
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368

Query: 125 RGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKV----EPNARRIQEHRRKYERLR 179
              A+  L Q ++      +  K +  + EI  A +K+     P+  + +E ++K E+  
Sbjct: 369 LEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKF 428

Query: 180 KE 181
            +
Sbjct: 429 ID 430

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 15/108 (13%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           +A   ++ GK + A+  LT+ I L          R  + +K  K + A  D    L++NP
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125

Query: 117 DSAKGYKI---------------RGMARARLGQWEEAANDLHVASKLD 149
              +  +                + +     G +  A   L    ++ 
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 11/93 (11%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
             VDL +E     ++  + + +                 +   +   A+   + A++ +P
Sbjct: 9   SGVDLGTENLYFQSMADVEKHL-----------ELGKKLLAAGQLADALSQFHAAVDGDP 57

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
           D+   Y  R      +G+ + A  DL    +L 
Sbjct: 58  DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 18/100 (18%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVY----------------VKLNK 100
           +A   + E   ++AI     A   N     +                        VK N 
Sbjct: 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394

Query: 101 PNAAIRDAY--VALETNPDSAKGYKIRGMARARLGQWEEA 138
               I  AY  +AL+ +PD+ +  + +  A  +      A
Sbjct: 395 KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 78.1 bits (193), Expect = 3e-17
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 3/134 (2%)

Query: 55  KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114
                 L++ G+L DA+ Q   A+  +P + I Y  RA V++ + K  AA+ D    +  
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66

Query: 115 NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRK 174
             D       RG    + G+ +EA +D     K +  E+     +       +  E +R 
Sbjct: 67  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES---QLVKADEMQRL 123

Query: 175 YERLRKERELKNFE 188
             +     +  ++ 
Sbjct: 124 RSQALDAFDGADYT 137

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 76.5 bits (189), Expect = 1e-16
 Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 22/139 (15%)

Query: 55  KLKAVDLISEGKLEDAIGQLTEAIMLNPTSA----ILYAARAGVYVKLNKPNAAIRDAYV 110
              A +LI +G+  DA  +    +   P+ A             + K  KP  AIR    
Sbjct: 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297

Query: 111 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQE 170
            L+  PD+    K R  A      ++EA  D   A + +              N ++I+E
Sbjct: 298 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-------------ENDQQIRE 344

Query: 171 HRRKYERLRKERELKNFER 189
              K      +R LK  ++
Sbjct: 345 GLEKA-----QRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           +A+D         AI  L + + +    A L   RA  ++K  +P  AI D   A +   
Sbjct: 126 QALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS 185

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYE 176
           D+ + +        +LG  E + +++    KLD D       K+   + +++++  +  E
Sbjct: 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH------KRCFAHYKQVKKLNKLIE 239

Query: 177 RLRKERELKNFE 188
              +      + 
Sbjct: 240 SAEELIRDGRYT 251

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 15/104 (14%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGV---------------YVKLNKPNAAI 105
           L+ +GKL++A     + +  NP+      A + +                       AAI
Sbjct: 81  LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140

Query: 106 RDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
                 LE     A+  ++R     + G+  +A +DL  ASKL 
Sbjct: 141 TFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 184

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.8 bits (130), Expect = 7e-09
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 56  LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN 115
           L+A   I EG+   AI  L  A  L   +   +   + +Y +L     ++ +    L+ +
Sbjct: 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218

Query: 116 PDSAKGYKIRGMARA------------RLGQWEEAANDLHVASKLD 149
            D  + +      +             R G++ +A +      K +
Sbjct: 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 15/108 (13%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           +A   ++ GK + A+  LT+ I L          R  + +K  K + A  D    L++NP
Sbjct: 43  RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102

Query: 117 DSAKGYKIRGM---------------ARARLGQWEEAANDLHVASKLD 149
              +  +                          +  A   L    ++ 
Sbjct: 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 11/62 (17%), Positives = 23/62 (37%)

Query: 88  YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASK 147
           +       +   +   A+   + A++ +PD+   Y  R      +G+ + A  DL     
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65

Query: 148 LD 149
           L 
Sbjct: 66  LK 67

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 77.4 bits (191), Expect = 9e-17
 Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 13/150 (8%)

Query: 50  AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAY 109
            A   K +A D       E+AI   ++AI LNP++AI Y  R+  Y++      A+ DA 
Sbjct: 5   RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT 64

Query: 110 VALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQ 169
            A+E +    KGY  R  +   LG++  A  D                + KV+P+ +  +
Sbjct: 65  RAIELDKKYIKGYYRRAASNMALGKFRAALRDY-------------ETVVKVKPHDKDAK 111

Query: 170 EHRRKYERLRKERELKNFERERQRKQAGAD 199
              ++  ++ K++  +      + K++  D
Sbjct: 112 MKYQECNKIVKQKAFERAIAGDEHKRSVVD 141

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 74.5 bits (184), Expect = 2e-16
 Identities = 24/106 (22%), Positives = 46/106 (43%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           +  +  ++    +A+   TE I   P  A  Y+ RA    KL     AI D   A+E +P
Sbjct: 145 EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVE 162
           +  + Y  +  A+  + ++  A   L  A   D +   G + ++++
Sbjct: 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 1/123 (0%)

Query: 55  KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114
           K +        + ++AI    +A  L+         RA    +  +   AI     A+E 
Sbjct: 9   KAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQ 67

Query: 115 NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRK 174
             +    YK+   + AR+G       DL    +             +    R  ++  +K
Sbjct: 68  GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKK 127

Query: 175 YER 177
            E 
Sbjct: 128 AEA 130

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.9 bits (146), Expect = 4e-11
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 1/95 (1%)

Query: 55  KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114
           K+ +      G     +G L + I     S   +   A +  KL      ++ A      
Sbjct: 76  KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR-TADILTKLRNAEKELKKAEAEAYV 134

Query: 115 NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
           NP+ A+  ++ G        W  A        K  
Sbjct: 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 50.6 bits (122), Expect = 7e-08
 Identities = 11/72 (15%), Positives = 25/72 (34%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
               +AI    +AI  +P     Y  +A   + + +  +A+     A   + +   G   
Sbjct: 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246

Query: 125 RGMARARLGQWE 136
           R + +      +
Sbjct: 247 REIDQLYYKASQ 258

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 71.6 bits (176), Expect = 2e-16
 Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 14/135 (10%)

Query: 51  ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYV 110
           A   K    D   +   + A+    +A  L+PT+      +A VY +    N        
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 111 ALETNPDS-------AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEP 163
           A+E   ++       AK Y   G +  +  ++++A +  + +       ++    ++ E 
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE- 122

Query: 164 NARRIQEHRRKYERL 178
                 +  ++ ERL
Sbjct: 123 ------KILKEQERL 131

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.0 bits (182), Expect = 1e-15
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 1/133 (0%)

Query: 45  EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAA 104
            + +  A   K +     +     +AI     AI L+P   + Y+  +  Y+        
Sbjct: 19  SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKV 78

Query: 105 IRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL-DYDEEIGMALKKVEP 163
           I     ALE  PD +K    R  A   LG + +A  DL V S   D+D      + +   
Sbjct: 79  IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNL 138

Query: 164 NARRIQEHRRKYE 176
           N + ++       
Sbjct: 139 NKQAMKVLNENLS 151

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.1 bits (146), Expect = 7e-11
 Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 5/134 (3%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
                  ++A     +A  LNP +   Y   A +  K  K   +           P   +
Sbjct: 320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE 379

Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLDYDEE-----IGMALKKVEPNARRIQEHRRKY 175
                       G ++ A     +A +L+  +E     IG  + K    AR+  +   + 
Sbjct: 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQL 439

Query: 176 ERLRKERELKNFER 189
           +  +    +K   +
Sbjct: 440 DEEKFNAAIKLLTK 453

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 55  KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114
               +    +  L DA   L E+I L+PT    Y   A             +    A++ 
Sbjct: 247 CYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL 305

Query: 115 NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151
           NP+    Y  RG     L  ++ A  D   A  L+ +
Sbjct: 306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 4/89 (4%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAA----RAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
           G   +    + +   L+P+    YA     R   +      N AI+    A+E +P+   
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLD 149
            Y          G  E+       A ++ 
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIK 89

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.9 bits (122), Expect = 9e-08
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 1/97 (1%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
            A  L  +GK  ++     E  +  PT   +    A +       + AI+   +A     
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKL-DYDE 152
              K +   G    +       ++          ++ 
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 16/113 (14%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----------------LNK 100
            A  L   G  + AI Q   A  L      ++     +  K                  K
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443

Query: 101 PNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEE 153
            NAAI+    A E +P S +        + ++ + +EA      ++ L    +
Sbjct: 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 6/112 (5%)

Query: 55  KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK--LNKPNAAIRDAYVAL 112
            L+   + +    + A   L++A+    ++       A   +    +  ++ +    V  
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236

Query: 113 ETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEE----IGMALKK 160
               ++A      G+         +A   L  +  L         + + L  
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLAD 288

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           +    + E K   AI  LT+A  L+P S       A + +++ K + AI     +     
Sbjct: 434 QDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493

Query: 117 DSAKGYKIRGMARARLGQWEEA 138
              +  +      A   + ++ 
Sbjct: 494 TMDEKLQ--ATTFAEAAKIQKR 513

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 68.5 bits (168), Expect = 3e-15
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 51  ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYV 110
               K +   L  +G   +A+    + I   P + + Y+ +A   +KL +   AI+    
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63

Query: 111 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE 152
            L     +     IR   + RL   + A   + +    + DE
Sbjct: 64  GLRYTSTAEHVA-IRSKLQYRLELAQGAVGSVQIPVV-EVDE 103

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.1 bits (177), Expect = 6e-15
 Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 2/150 (1%)

Query: 55  KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114
           K K        K +DAI     A+ L     + Y+  +  YV +      +  +  ALE 
Sbjct: 10  KDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALEL 68

Query: 115 NPDSAKGYKIRGMARARLGQWEEAANDLHVAS-KLDYDEEIGMALKKVEPNARRIQEHRR 173
            PD +K    R  A   LG++ +A  DL V S   D+++     + +   N + + + + 
Sbjct: 69  KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKE 128

Query: 174 KYERLRKERELKNFERERQRKQAGADREAL 203
           K+  +            +  K+    +E L
Sbjct: 129 KFGDIDTATATPTELSTQPAKERKDKQENL 158

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 13/93 (13%), Positives = 30/93 (32%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           +          + A     +A  L+P +   Y   A +  + NK +        A    P
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
           ++ +              +++A     +A +L+
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 1/95 (1%)

Query: 55  KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114
           +   +    +     A   + +AI L P     Y   A +    N           AL+ 
Sbjct: 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL 299

Query: 115 NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
           + +++  Y  RG     L  +++A  D   A +LD
Sbjct: 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 16/134 (11%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK---------LNKPNAAIRD 107
            A  L  +   + A+ Q   AI L      +Y   A +  K         +     A   
Sbjct: 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437

Query: 108 AYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEE---IGMALKKVEPN 164
              A + +P S +        + +    +EA      ++ L    E     +        
Sbjct: 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA----E 493

Query: 165 ARRIQEHRRKYERL 178
           A ++Q+  R    L
Sbjct: 494 AAKVQQRIRSDPVL 507

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 20/85 (23%), Positives = 25/85 (29%), Gaps = 1/85 (1%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
              E+ + +  E   L    AI            N P  A  D   A+E  P     Y  
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIY 275

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
             +  A      E  N    A KLD
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLD 300

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
               +A   L +A  L+P S       A + ++    + AI     + +      +  + 
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488

Query: 125 RGMARARLGQWEEAANDLHVASKL 148
              A A   Q +   +D  +A K+
Sbjct: 489 ITFAEAAKVQ-QRIRSDPVLAKKI 511

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 70.7 bits (173), Expect = 1e-14
 Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 15  ESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQL 74
           +  I  +     E      +K  +     +EE  + + + K +      EGK + A+ Q 
Sbjct: 111 KFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQY 170

Query: 75  TEAI---------------MLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA 119
            + +                        +   A  ++KL   +AAI     ALE + ++ 
Sbjct: 171 KKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 230

Query: 120 KGYKIRGMARARLGQWEEAANDLHVASKLD-YDEEIGMALKKVEPNARRIQEHRRKYERL 178
           KG   RG A   +  +E A  D     +L   ++     L   +   +RI+    + E+ 
Sbjct: 231 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ---QRIRRQLAR-EKK 286

Query: 179 RKERELKNFERERQRKQA 196
                 +    E  + +A
Sbjct: 287 LYANMFERLAEEENKAKA 304

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 20/148 (13%)

Query: 44  TEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAI----------------MLNPTSAIL 87
            EE   +A   K +  +   + ++ +AI +  EA+                         
Sbjct: 31  DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90

Query: 88  YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASK 147
               A  Y K      AI  A   L+ + ++ K     G+A    G  EEA  +L+ A+ 
Sbjct: 91  NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150

Query: 148 LD-YDEEIGMALKKVEPNARRIQEHRRK 174
           L+  + +I  + +       +++E R+K
Sbjct: 151 LNPNNLDIRNSYELCV---NKLKEARKK 175

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 27/187 (14%)

Query: 5   LSTEDDDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISE 64
           L   DD  I   D   D+      D D   K  D  + ++E++++  N            
Sbjct: 184 LKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGN-------TFFKS 236

Query: 65  GKLEDAIGQLTEAI----------------MLNPTSAILYAARAGVYVKLNKPNAAIRDA 108
              E AI + T+ +                 L P +           +K++    A+   
Sbjct: 237 QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC 296

Query: 109 YVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD-YDEEIGMALKKVEPNARR 167
             ALE +P + K    R      L ++++A  DL  A ++   D+ I   L KV+   ++
Sbjct: 297 LEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK---QK 353

Query: 168 IQEHRRK 174
           I+  + K
Sbjct: 354 IKAQKDK 360

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 66.6 bits (163), Expect = 4e-14
 Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 23/151 (15%)

Query: 44  TEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIM------------------LNPTSA 85
            ++   +    + K  +L  +   ++AI    +A+                   L+  + 
Sbjct: 4   EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNI 63

Query: 86  ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVA 145
            LYA  +  Y+ +   + A   +   L+    + K    R  AR    + +EA  DL + 
Sbjct: 64  PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL 123

Query: 146 SKLDYD--EEIGMALKKVEPNARRIQEHRRK 174
            +        +   +K V     R  E +  
Sbjct: 124 LRNHPAAASVVAREMKIVT---ERRAEKKAD 151

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 65.6 bits (161), Expect = 9e-13
 Identities = 24/95 (25%), Positives = 33/95 (34%)

Query: 55  KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET 114
            L +       +L+ +    T AI  NP  A  Y+    VY +  +   AI     AL  
Sbjct: 37  LLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96

Query: 115 NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
            PD   GY     A    G  E A      A + +
Sbjct: 97  KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.7 bits (156), Expect = 3e-12
 Identities = 23/89 (25%), Positives = 32/89 (35%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
               G+L++AI     A+ L P     Y   A   V       A++    AL+ NPD   
Sbjct: 77  YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136

Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLD 149
                G     LG+ EEA      A +  
Sbjct: 137 VRSDLGNLLKALGRLEEAKACYLKAIETQ 165

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.9 bits (154), Expect = 8e-12
 Identities = 17/92 (18%), Positives = 34/92 (36%)

Query: 58  AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD 117
           A      G  E A     +     P +  +    + ++ +  + + +   + +A++ NP 
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 118 SAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
            A+ Y   G      GQ +EA      A +L 
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 21/93 (22%), Positives = 35/93 (37%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
            A  L++ G +E A+     A+  NP    + +    +   L +   A      A+ET P
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
           + A  +   G      G+   A +    A  LD
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.0 bits (149), Expect = 3e-11
 Identities = 19/89 (21%), Positives = 33/89 (37%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
           L + G+LE+A     +AI   P  A+ ++    V+    +   AI     A+  +P+   
Sbjct: 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204

Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLD 149
            Y   G        ++ A      A  L 
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLS 233

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.0 bits (149), Expect = 3e-11
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
            A  L  +G + +A      A+ L PT A      A +  +      A+R    ALE  P
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKL--DYDE---EIGMALKK 160
           + A  +        + G+ +EA      A ++   + +    +G  LK+
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 17/89 (19%), Positives = 33/89 (37%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
             ++G++  AI    +A+ L+P     Y     V  +    + A+     AL  +P+ A 
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238

Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLD 149
            +          G  + A +    A +L 
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ 267

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 21/95 (22%), Positives = 34/95 (35%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
               L      + A+     A+ L+P  A+++   A VY +    + AI     A+E  P
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151
                Y     A    G   EA +  + A +L   
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.6 bits (122), Expect = 9e-08
 Identities = 15/69 (21%), Positives = 28/69 (40%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
           G +E+A+    +A+ + P  A  ++  A V  +  K   A+     A+  +P  A  Y  
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378

Query: 125 RGMARARLG 133
            G     + 
Sbjct: 379 MGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 9/62 (14%), Positives = 19/62 (30%)

Query: 88  YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASK 147
               A    +     AA R         PD+     +      +  + + +A+   +A K
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 148 LD 149
            +
Sbjct: 62  QN 63

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 11/128 (8%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
              +    GK +DA        ML+   A  +         L     A++        + 
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKY- 175
           +  +          +LG  + A +  + A  L             +P    +        
Sbjct: 84  NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA----------QPAHEALAARAGAML 133

Query: 176 ERLRKERE 183
           E +   ++
Sbjct: 134 EAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 12/143 (8%)

Query: 72  GQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR 131
           G L     L+  +     A      +  K + A +        +   A+ +   G  R  
Sbjct: 5   GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64

Query: 132 LGQWEEAANDLHVASKLDYDE-----EIGMALKKVEPNARRIQEHRRKYER-LRKERELK 185
           LG +E+A       + +D +E            ++      +      +           
Sbjct: 65  LGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG----DLDGAESGFYSARALAAAQP 120

Query: 186 NFERERQRKQAGADREALSGLRD 208
             E    R  AGA  EA++  +D
Sbjct: 121 AHEALAAR--AGAMLEAVTARKD 141

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 63.9 bits (155), Expect = 3e-12
 Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 22/191 (11%)

Query: 24  DVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAI----- 78
           +V     D +++    S    EE   AA+  K+    L  E KLE+A+ Q   AI     
Sbjct: 152 EVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD 211

Query: 79  ------------MLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126
                       M        +   A   +KL + + AI    + L     + K    RG
Sbjct: 212 DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRG 271

Query: 127 MARARLGQWEEAANDLHVASKLD-YDEEIGMALKKVEPNARRIQEHRRKYERLRKERELK 185
            A+A LGQ + A +D   A K    D+ I   L+ +     + +   +K ++   +   K
Sbjct: 272 KAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA---EQEKALYQK-QKEMYKGIFK 327

Query: 186 NFERERQRKQA 196
             +    + ++
Sbjct: 328 GKDEGGAKSKS 338

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 63.1 bits (154), Expect = 4e-12
 Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 8/112 (7%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYV---ALE 113
            A  L       +AI    +       S  +Y  RA  Y +L K + A +D       + 
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 114 TNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL--DYDE---EIGMALKK 160
                +  ++  G    + GQ   A      A        +   +IG     
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 15/89 (16%), Positives = 30/89 (33%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
           L+ +G+   AI Q   A+  + T   +Y      +        AI+     +       K
Sbjct: 84  LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK 143

Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLD 149
            +   G A     ++ +A +      +L 
Sbjct: 144 VFYELGQAYYYNKEYVKADSSFVKVLELK 172

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.5 bits (137), Expect = 7e-10
 Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 3/97 (3%)

Query: 56  LKAVDLISEGKLEDAIGQL---TEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVAL 112
            +AV      K + A   +      +      +  +     + +K  + + AI+    A+
Sbjct: 42  RRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV 101

Query: 113 ETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
           + +      Y   G      G +  A   +    +  
Sbjct: 102 DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 15/112 (13%), Positives = 27/112 (24%), Gaps = 16/112 (14%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN---KPNAAIRD--------AYVALE 113
            +   A     + + L P   I Y  RA      +   K   A           A    +
Sbjct: 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215

Query: 114 TNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD--YDE---EIGMALKK 160
              +  +  +             +A         LD    +    + M L+ 
Sbjct: 216 YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 11/60 (18%), Positives = 17/60 (28%)

Query: 88  YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASK 147
               A    K N    AI           +S   Y  R +    L +++ A  D+     
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 15/113 (13%), Positives = 35/113 (30%), Gaps = 7/113 (6%)

Query: 67  LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126
           ++    +L   +     + +L       Y +  + +AA+     AL+ +P  +  +K  G
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60

Query: 127 MARARLGQWEEAANDLHVASKLDYD-------EEIGMALKKVEPNARRIQEHR 172
                 G    A                    +E+ + L+++         H 
Sbjct: 61  KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 2/84 (2%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYV-ALETNPDSA 119
                + + A+  L  A+  +PT ++ +               A   A+   L       
Sbjct: 29  YAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGAR-QAWESGLAAAQSRG 87

Query: 120 KGYKIRGMARARLGQWEEAANDLH 143
               ++ +         E A + H
Sbjct: 88  DQQVVKELQVFLRRLAREDALEHH 111

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.5 bits (152), Expect = 1e-11
 Identities = 14/93 (15%), Positives = 24/93 (25%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
                 +   ++  +  L +A  L P   +  A+  G    L      +     A    P
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
                    G  +  L   +     L  A  L 
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.5 bits (152), Expect = 1e-11
 Identities = 14/85 (16%), Positives = 24/85 (28%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    P+       
Sbjct: 324 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 383

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
            G  +  L   +     L  A  L 
Sbjct: 384 NGGGKQALETVQRLLPVLCQAHGLT 408

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 13/88 (14%), Positives = 23/88 (26%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    P        
Sbjct: 392 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 451

Query: 125 RGMARARLGQWEEAANDLHVASKLDYDE 152
            G  R  L       +    A     ++
Sbjct: 452 NGGGRPALESIVAQLSRPDPALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.9 bits (148), Expect = 3e-11
 Identities = 14/85 (16%), Positives = 24/85 (28%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+ +G    L      +     A    P        
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 315

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
            G  +  L   +     L  A  L 
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLT 340

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.5 bits (147), Expect = 5e-11
 Identities = 13/85 (15%), Positives = 22/85 (25%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    P        
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 349

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
               +  L   +     L  A  L 
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLT 374

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.8 bits (145), Expect = 9e-11
 Identities = 13/85 (15%), Positives = 23/85 (27%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    P+       
Sbjct: 86  ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
               +  L   +     L  A  L 
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLT 170

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 13/85 (15%), Positives = 23/85 (27%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    P+       
Sbjct: 358 ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 417

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
               +  L   +     L  A  L 
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLT 442

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 13/85 (15%), Positives = 22/85 (25%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    P        
Sbjct: 222 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 281

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
               +  L   +     L  A  L 
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLT 306

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 15/85 (17%), Positives = 25/85 (29%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L    A +     A    P+       
Sbjct: 120 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIAS 179

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
            G  +  L   +     L  A  L 
Sbjct: 180 NGGGKQALETVQRLLPVLCQAHGLT 204

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 14/85 (16%), Positives = 23/85 (27%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    P        
Sbjct: 188 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 247

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
            G  +  L   +     L  A  L 
Sbjct: 248 NGGGKQALETVQRLLPVLCQAHGLT 272

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 11/74 (14%), Positives = 17/74 (22%)

Query: 76  EAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW 135
             + L P   +  A+  G    L      +     A    P            +  L   
Sbjct: 63  APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETV 122

Query: 136 EEAANDLHVASKLD 149
           +     L  A  L 
Sbjct: 123 QRLLPVLCQAHGLT 136

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 58.3 bits (141), Expect = 4e-11
 Identities = 16/98 (16%), Positives = 33/98 (33%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
            A D  ++G++E+A        + +  +       A +Y    +   A     VA     
Sbjct: 42  YAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI 154
           +        G  + RL    +A     +  +   DE++
Sbjct: 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 60.5 bits (146), Expect = 5e-11
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 19/176 (10%)

Query: 15  ESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQL 74
           +  IE +   + E      +K  +     T+E  + A + K K       GK   A+ Q 
Sbjct: 232 KFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQY 291

Query: 75  TEAI---------------MLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA 119
            + +                        +   A  Y+KL +   A+     AL  +  + 
Sbjct: 292 GKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE 351

Query: 120 KGYKIRGMARARLGQWEEAANDLHVASKLD-YDEEIGMALKKVEPNARRIQEHRRK 174
           KG   RG A+  + ++E A  D     +++  ++   + +   +   ++ +EH  +
Sbjct: 352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ---KKAKEHNER 404

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 60.6 bits (146), Expect = 6e-11
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 49  DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDA 108
           + A      A  L  +GKL++A+    EAI ++PT A  Y+       ++     A++  
Sbjct: 41  EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY 100

Query: 109 YVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEE-----IGMALKKVEP 163
             A++ NP  A  +          G   EA      A KL  D       +   L+ V  
Sbjct: 101 TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160

Query: 164 NARRIQEHRR 173
                +  ++
Sbjct: 161 WTDYDERMKK 170

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 56.4 bits (135), Expect = 2e-09
 Identities = 24/145 (16%), Positives = 44/145 (30%)

Query: 49  DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDA 108
             A+        L     ++ A+   T AI +NP  A  ++  A ++        AI   
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 109 YVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRI 168
             AL+  PD    Y         +  W +    +     +  D+     L  V P+   +
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSML 194

Query: 169 QEHRRKYERLRKERELKNFERERQR 193
                 + +   ER       +   
Sbjct: 195 YPLSHGFRKAIAERHGNLCLDKINV 219

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.8 bits (131), Expect = 5e-09
 Identities = 17/89 (19%), Positives = 35/89 (39%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
              +G +E+A+    +A+ + P  A  ++  A V  +  K   A+     A+  +P  A 
Sbjct: 19  KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78

Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLD 149
            Y   G     +   + A      A +++
Sbjct: 79  AYSNMGNTLKEMQDVQGALQCYTRAIQIN 107

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 15/70 (21%), Positives = 25/70 (35%)

Query: 80  LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAA 139
             PT A      A +  +      A+R    ALE  P+ A  +        + G+ +EA 
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 140 NDLHVASKLD 149
                A ++ 
Sbjct: 64  MHYKEAIRIS 73

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 58.2 bits (141), Expect = 9e-11
 Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 1/106 (0%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYV-KLNKPNAAIRDAYVALETN 115
            A   +  G+ +DA+    + + L   +          Y     +    +   Y  L + 
Sbjct: 94  CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153

Query: 116 PDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKV 161
                     G+++    ++E+A N L          E    L K+
Sbjct: 154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI 199

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 14/98 (14%), Positives = 29/98 (29%)

Query: 42  EVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKP 101
            V +    ++ +    A+        + A     E +   P +     A A + V   + 
Sbjct: 45  NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE 104

Query: 102 NAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAA 139
             A+R     L+   D+       G       + E+  
Sbjct: 105 KDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 16/109 (14%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILY----------------AARAGVYVKLNK 100
           K    I  G+   A+    + I LN     +Y                   A  Y K   
Sbjct: 10  KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69

Query: 101 PNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
            + A       L+  P++    +     +   GQ ++A        +L+
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.9 bits (145), Expect = 9e-11
 Identities = 15/93 (16%), Positives = 36/93 (38%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           KA  L    +  D +   T+ + ++P +  +Y        +  + N     +   ++ +P
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP 370

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
           + A  +   G+    + +  EA      +S +D
Sbjct: 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.5 bits (139), Expect = 6e-10
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 7/106 (6%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYV-ALETNPDSA 119
            +   K+ +A    +++  ++P     +   A  +    + + AI  AY  A      + 
Sbjct: 383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI-SAYTTAARLFQGTH 441

Query: 120 KGYKIRGMARARLGQWEEAANDLHVASKL--DYDE---EIGMALKK 160
             Y   GM   +LG    A   L  +  L         E+G+    
Sbjct: 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN 487

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.5 bits (139), Expect = 6e-10
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 12/108 (11%)

Query: 65  GKLEDAIGQLTEAIML-------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD 117
             ++ AI     A++L           A  +A     Y KL   +AAI      L  + +
Sbjct: 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548

Query: 118 SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEE-----IGMALKK 160
            A  +    +          A   LH +  +  +E      +  AL++
Sbjct: 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 12/108 (11%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRD-------AYVALETNPD 117
           G +  A   L  +  L     +L      V    +    AI                   
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514

Query: 118 SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEE-----IGMALKK 160
            A  +   G A  +L  ++ A + L+    L  ++      I +    
Sbjct: 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 10/87 (11%), Positives = 23/87 (26%)

Query: 63  SEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGY 122
           S             +I     S+ L   +A      ++    +      LE +P +   Y
Sbjct: 283 SHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVY 342

Query: 123 KIRGMARARLGQWEEAANDLHVASKLD 149
            +   +    G+  +     +      
Sbjct: 343 PLHLASLHESGEKNKLYLISNDLVDRH 369

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.1 bits (117), Expect = 4e-07
 Identities = 16/94 (17%), Positives = 26/94 (27%)

Query: 56  LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN 115
             A     EG+ + AI   T A  L   + + Y      +++L     A      +    
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471

Query: 116 PDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
                     G+        + A N    A  L 
Sbjct: 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 19/95 (20%), Positives = 36/95 (37%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           + V   S G    A    ++A+ + P    ++        +    +AA       LE +P
Sbjct: 49  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151
                +  RG+A    G+ + A +DL    + D +
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 11/82 (13%), Positives = 30/82 (36%)

Query: 60  DLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA 119
           ++  +  +E      T+   L    +         Y+ L   ++A     +A+  N  + 
Sbjct: 190 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249

Query: 120 KGYKIRGMARARLGQWEEAAND 141
             ++   +  + LGQ ++   +
Sbjct: 250 VEHRYALLELSLLGQDQDDLAE 271

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 58  AVDLISEGKLEDAIGQLTEAI----MLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE 113
           AV L    + E  + ++ + +    + +   A L   R  +Y  L     A  D   AL 
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 114 TNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
             PD  + +   G+   + G ++ A        +LD
Sbjct: 72  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 14/93 (15%), Positives = 28/93 (30%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
           L   G  + A       + L+PT    +  R        +   A  D     + +P+   
Sbjct: 87  LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 146

Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLDYDEE 153
                 +A  +L + +          K D ++ 
Sbjct: 147 RSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW 179

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 13/119 (10%), Positives = 29/119 (24%), Gaps = 8/119 (6%)

Query: 64  EGKLEDAIGQLTEAIMLNPTSAILYAARA---GVYVKLNKPNAAIRDAYVALETNPDSAK 120
           +   + A   L +    +      +       G   +         DA          ++
Sbjct: 157 KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 216

Query: 121 GYKIRGMARARLGQWEEAANDLHVASKL--DYDEE---IGMALKKVEPNARRIQEHRRK 174
                G     LG  + A     +A         E     + L  +  +   + E  ++
Sbjct: 217 TNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ 275

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 57.1 bits (139), Expect = 3e-10
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
           G  E A    T+AI  N   AI Y   A +   +N+   A+     ALE +  +A  Y  
Sbjct: 37  GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96

Query: 125 RGMARARLGQWEEAANDLHVASKL--DYDE---EIGMALKK 160
            G        ++EA +    A +   +  +    +G  L K
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK 137

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
            +LE A+    +A+ L+ ++A  Y     VYV       A      AL    ++   + +
Sbjct: 71  NELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM 130

Query: 125 RGMARARLGQWEEAANDLHVASKL--DYDE---EIGMALKK 160
            G    +L Q + A   L  A +L  +  E   + GM L  
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 53.7 bits (130), Expect = 6e-09
 Identities = 14/103 (13%), Positives = 27/103 (26%), Gaps = 9/103 (8%)

Query: 67  LEDAIGQLTEAIMLNPTSAILY----AARAGVYVKLNKPNAAIRDAYVALETNPDSAKGY 122
           +  +      +  L P  + +       + G   +      A      A+E N + A  Y
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60

Query: 123 KIRGMARARLGQWEEAANDLHVASKL--DYDE---EIGMALKK 160
                  + + + E A      A +L           G     
Sbjct: 61  INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 52.9 bits (128), Expect = 9e-09
 Identities = 17/91 (18%), Positives = 29/91 (31%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
           L+   + + A+  L  A+ LN                    + A+       E +P  A 
Sbjct: 135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD 194

Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLDYD 151
            +   G+  A     E+A   L  A  +  D
Sbjct: 195 AFYNAGVTYAYKENREKALEMLDKAIDIQPD 225

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 13/78 (16%), Positives = 25/78 (32%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
             + L +EG L++A+ Q       +P  A  +      Y        A+     A++  P
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224

Query: 117 DSAKGYKIRGMARARLGQ 134
           D       + +       
Sbjct: 225 DHMLALHAKKLLGHHHHH 242

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 15/88 (17%), Positives = 29/88 (32%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
                    K  +A+    +A++L P +A  Y+A   ++  +     A+   + AL    
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHV 144
           D      + G          EA     +
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIGADI 329

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 14/110 (12%)

Query: 65  GKLEDAIGQLTEAIMLNPTS---------AILYAARAGVYVKLNKPNAAIRDAYVALETN 115
           G+ + A     +A+                 L      V  KL K   A+     AL   
Sbjct: 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266

Query: 116 PDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD-----EEIGMALKK 160
           P +A  Y   G   + +G +E A +  H A  L  D       +G  ++ 
Sbjct: 267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 1/94 (1%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
            A         +      +  +  +P  A       G  V+LNK N     ++  ++  P
Sbjct: 28  LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP 87

Query: 117 DSAKGYKIRGMARARLGQ-WEEAANDLHVASKLD 149
            +   +   G     +G   E A   L  A+ L+
Sbjct: 88  SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE 121

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 7/101 (6%)

Query: 66  KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAY-VALETNPDSAKGYKI 124
           K E A   L++A  L  T    + A    +   ++ + A+  AY  A +           
Sbjct: 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAM-AAYFTAAQLMKGCHLPMLY 164

Query: 125 RGMARARLGQWEEAANDLHVASKL--DYDE---EIGMALKK 160
            G+        + A      A  +  +      E+G+   +
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ 205

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 14/114 (12%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE------- 113
                  + A    ++A+ + P    +      V  +  +   A +    ALE       
Sbjct: 169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN 228

Query: 114 --TNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEE-----IGMALKK 160
             T           G    +L ++ EA +    A  L          IG     
Sbjct: 229 EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL 282

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 19/108 (17%), Positives = 31/108 (28%)

Query: 56  LKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN 115
                   E + + A+     A  L     +        Y   N    A R    AL   
Sbjct: 130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189

Query: 116 PDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEP 163
           P+        G+   + G+W+ A      A +        + + K EP
Sbjct: 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP 237

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 10/82 (12%), Positives = 24/82 (29%)

Query: 68  EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127
           + +   + E++     +  +  + A  +          +   V +E +P  A    +   
Sbjct: 5   KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64

Query: 128 ARARLGQWEEAANDLHVASKLD 149
               L +  E     H    L 
Sbjct: 65  TLVELNKANELFYLSHKLVDLY 86

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 54.0 bits (131), Expect = 5e-10
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           + V     G   ++I    +AI L+P  +  +  +      L +   A+      +    
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 117 DS--AKGYKIRGMARARLGQWEEAANDLHVASKLD 149
           D      +  +  A   +   E  A      +KL+
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.3 bits (138), Expect = 8e-10
 Identities = 14/85 (16%), Positives = 23/85 (27%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    PD       
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 333

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
               +  L   +     L  A  L 
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLT 358

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 15/85 (17%), Positives = 24/85 (28%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    PD       
Sbjct: 240 ETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 299

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
            G  +  L   +     L  A  L 
Sbjct: 300 HGGGKQALETVQRLLPVLCQAHGLT 324

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 3e-09
 Identities = 15/85 (17%), Positives = 24/85 (28%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    PD       
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 367

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
            G  +  L   +     L  A  L 
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLT 392

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.0 bits (132), Expect = 5e-09
 Identities = 15/87 (17%), Positives = 24/87 (27%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    PD       
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIAS 265

Query: 125 RGMARARLGQWEEAANDLHVASKLDYD 151
               +  L   +     L  A  L  D
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHGLTPD 292

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 13/87 (14%), Positives = 23/87 (26%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A     +       
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIAS 706

Query: 125 RGMARARLGQWEEAANDLHVASKLDYD 151
               +  L   +     L  A  L  D
Sbjct: 707 NNGGKQALETVQRLLPVLCQAHGLTPD 733

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 12/85 (14%), Positives = 21/85 (24%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L     +  A+  G    L      +     A    P        
Sbjct: 579 ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 638

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
               +  L   +     L  A  L 
Sbjct: 639 HDGGKQALETVQRLLPVLCQAHGLT 663

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.7 bits (126), Expect = 3e-08
 Identities = 15/87 (17%), Positives = 25/87 (28%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    PD       
Sbjct: 613 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 672

Query: 125 RGMARARLGQWEEAANDLHVASKLDYD 151
            G  +  L   +     L  A  L  +
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQE 699

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 6e-08
 Identities = 15/87 (17%), Positives = 24/87 (27%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    PD       
Sbjct: 511 ATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 570

Query: 125 RGMARARLGQWEEAANDLHVASKLDYD 151
            G  +  L   +     L  A  L   
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQV 597

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 1/87 (1%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    PD       
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 401

Query: 125 RGMARARLGQWEEAANDLHVASKLDYD 151
            G  +A L   +     L  A  L  D
Sbjct: 402 NGGKQA-LETVQRLLPVLCQAHGLTPD 427

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 14/87 (16%), Positives = 23/87 (26%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +   L P   +  A+  G    L      +     A    PD       
Sbjct: 443 ETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIAS 502

Query: 125 RGMARARLGQWEEAANDLHVASKLDYD 151
               +  L   +     L  A  L  D
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGLTPD 529

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 13/88 (14%), Positives = 24/88 (27%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +          P        
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468

Query: 125 RGMARARLGQWEEAANDLHVASKLDYDE 152
               +  L   ++    L  A  L  D+
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQ 496

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.5 bits (115), Expect = 7e-07
 Identities = 14/87 (16%), Positives = 23/87 (26%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L     +  A+  G    L      +     A    PD       
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740

Query: 125 RGMARARLGQWEEAANDLHVASKLDYD 151
            G  +  L   +     L  A  L   
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPA 767

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 16/87 (18%), Positives = 25/87 (28%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    PD       
Sbjct: 477 ETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIAS 536

Query: 125 RGMARARLGQWEEAANDLHVASKLDYD 151
            G  +  L   +     L  A  L  D
Sbjct: 537 NGGGKQALETVQRLLPVLCQAHGLTPD 563

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 13/89 (14%), Positives = 23/89 (25%), Gaps = 1/89 (1%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
             +   ++  +  L +A  L P   +  A+  G    L      +     A    PD   
Sbjct: 372 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVV 430

Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLD 149
                   +  L   +     L     L 
Sbjct: 431 AIASHDGGKQALETVQRLLPVLCQTHGLT 459

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 13/91 (14%), Positives = 21/91 (23%), Gaps = 5/91 (5%)

Query: 64  EGKLEDAIGQLTEA-----IMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS 118
                +A+     A     + L P   +  A+  G    L      +     A    P  
Sbjct: 166 GVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQ 225

Query: 119 AKGYKIRGMARARLGQWEEAANDLHVASKLD 149
                     +  L   +     L  A  L 
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHGLP 256

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 12/87 (13%), Positives = 21/87 (24%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             ++  +  L +A  L P   +  A+  G    L      +     A    P        
Sbjct: 715 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 774

Query: 125 RGMARARLGQWEEAANDLHVASKLDYD 151
               +  L   +     L     L   
Sbjct: 775 NIGGKQALETVQRLLPVLCQDHGLTLA 801

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 17/104 (16%), Positives = 25/104 (24%)

Query: 46  EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAI 105
              D   + K  +     E  L DA       + L+    +  A R GV        +  
Sbjct: 119 THEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRN 178

Query: 106 RDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
                 L   P            +  L   +     L  A  L 
Sbjct: 179 ALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLT 222

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 56.5 bits (137), Expect = 9e-10
 Identities = 10/95 (10%), Positives = 22/95 (23%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           + + ++    L +A           P     + +      +  K   AI     A   +P
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151
                +    ++         A   L         
Sbjct: 87  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 19/87 (21%), Positives = 33/87 (37%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
              + A   L  A+ L P  A L+          N+P  A+     AL+ NP   +    
Sbjct: 186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245

Query: 125 RGMARARLGQWEEAANDLHVASKLDYD 151
             ++ + + Q++ AA  L  A  +   
Sbjct: 246 MAVSYSNMSQYDLAAKQLVRAIYMQVG 272

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYV-ALETN 115
           +     +  +  +    L  A+ +NP  A L+A+   +Y   N  ++A       A+E  
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAA-ANLRRAVELR 202

Query: 116 PDSAKGYKIRGMARARLGQWEEA 138
           PD A+ +   G   A   + +EA
Sbjct: 203 PDDAQLWNKLGATLANGNRPQEA 225

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 21/88 (23%), Positives = 34/88 (38%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
            K   AI  L  A ML+P    ++AA A  +   +  NAA+      L + P   +   +
Sbjct: 69  EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSV 128

Query: 125 RGMARARLGQWEEAANDLHVASKLDYDE 152
              A   +      + D   A+  +Y E
Sbjct: 129 NLQADVDIDDLNVQSEDFFFAAPNEYRE 156

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 15/97 (15%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILY---------------AARAGVYVKLNKP 101
            AV   +E     A+  L   ++  P    L                 +    +   N+ 
Sbjct: 95  LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154

Query: 102 NAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEA 138
                  + ALE NP+ A+ +   G+       ++ A
Sbjct: 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 12/85 (14%), Positives = 23/85 (27%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
           G +                            +KL     A        +  P+  + ++ 
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
            G+ +A   +   A   L+ A  LD
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLD 85

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 14/93 (15%), Positives = 29/93 (31%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           + +  + EG L +A+     A+  +P     +        +  +   AI      LE  P
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
           D+        ++        +A   L    +  
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYT 162

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYV-ALETNPDSAKGYK 123
           G+ + A+   T A+ + P   +L+          N+   A+  AY  ALE  P   +   
Sbjct: 231 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV-AAYRRALELQPGYIRSRY 289

Query: 124 IRGMARARLGQWEEAANDLHVASKLDYD 151
             G++   LG   EA      A  +   
Sbjct: 290 NLGISCINLGAHREAVEHFLEALNMQRK 317

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 14/88 (15%), Positives = 21/88 (23%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
            +   AI  L   + L P +     A A  +   +    A       L   P  A     
Sbjct: 112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171

Query: 125 RGMARARLGQWEEAANDLHVASKLDYDE 152
                   G          + S   + E
Sbjct: 172 AEEGAGGAGLGPSKRILGSLLSDSLFLE 199

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 14/99 (14%), Positives = 25/99 (25%), Gaps = 17/99 (17%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNA------------- 103
            AV   +E     A   L + +   P  A L               +             
Sbjct: 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197

Query: 104 --AIRDAYVALETNPDS--AKGYKIRGMARARLGQWEEA 138
                    A+  +P S         G+     G++++A
Sbjct: 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 11/85 (12%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
            + E+A+     A+ L P             + L     A+     AL     S      
Sbjct: 265 NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324

Query: 125 R-----------GMARARLGQWEEA 138
                        +A + LGQ +  
Sbjct: 325 GGAMSENIWSTLRLALSMLGQSDAY 349

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 11/131 (8%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
            A +    G  EDA        +L+   +  +         + + + AI         + 
Sbjct: 27  LAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKY- 175
              +          + G+  EA + L +A +L  +           P    +        
Sbjct: 87  XEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN----------XPEFXELSTRVSSML 136

Query: 176 ERLRKERELKN 186
           E ++ ++E+K+
Sbjct: 137 EAIKLKKEMKH 147

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 43.7 bits (103), Expect = 6e-06
 Identities = 11/85 (12%), Positives = 27/85 (31%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
           G L    G +     ++  +     + A    +      A          +   ++ +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
            G  R  +GQ++ A +     + +D
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMD 85

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 16/85 (18%), Positives = 25/85 (29%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
                 + QL  A+   P   + +   A   + +    A        L  +P   +    
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
            G  R    +  EAA  L  AS   
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAA 87

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 18/92 (19%), Positives = 26/92 (28%)

Query: 58  AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD 117
           A   +  G        +   + L+P      A    V     +   A      A +  P+
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89

Query: 118 SAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
                   G A    GQ E AA     A +L 
Sbjct: 90  HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 12/79 (15%), Positives = 19/79 (24%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
            +  +A   L +A    P    +            +  AA      A +  P+       
Sbjct: 71  QRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQ 130

Query: 125 RGMARARLGQWEEAANDLH 143
               R RL  W        
Sbjct: 131 LLNWRRRLCDWRALDVLSA 149

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 18/95 (18%), Positives = 33/95 (34%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           + +  + EG L   I  +  AI+ +P  A  +        +     AAI      LE  P
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD 151
           ++ K      ++       ++A   L    K +  
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.5 bits (129), Expect = 9e-09
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 2/103 (1%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
              + AI  L   + L P +     A A  Y   +    A       ++ NP      K 
Sbjct: 113 ENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKN 172

Query: 125 RGMARARLGQWEEAANDLHVASKL--DYDEEIGMALKKVEPNA 165
           +  +     +  ++  D  V   +   Y E        ++P+ 
Sbjct: 173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 18/85 (21%), Positives = 31/85 (36%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
           G+   AI     A+ + P    L+          ++   A+     ALE  P   +    
Sbjct: 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN 286

Query: 125 RGMARARLGQWEEAANDLHVASKLD 149
            G++   LG + EA ++   A  L 
Sbjct: 287 LGISCINLGAYREAVSNFLTALSLQ 311

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 10/93 (10%), Positives = 26/93 (27%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           +  +  ++  +  +                         +K       I     A+  +P
Sbjct: 37  ENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP 96

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
             A+ ++  G+ +A     + A   L    +L 
Sbjct: 97  GDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 12/94 (12%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRD--------- 107
            AV   +    +DA   L   I  NP    L   + G      + + +  D         
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

Query: 108 AYV-ALETNPDS--AKGYKIRGMARARLGQWEEA 138
            Y+ A   N D          G+     G++  A
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRA 232

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 11/64 (17%), Positives = 21/64 (32%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
            + E+A+   T A+ + P             + L     A+ +   AL     S    ++
Sbjct: 261 DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQV 320

Query: 125 RGMA 128
              A
Sbjct: 321 PHPA 324

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 16/105 (15%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET-NPDSAKGYK 123
             + +A    T +I  +   A+ Y  R  +Y +  K + AI+D   AL     +    YK
Sbjct: 51  KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110

Query: 124 I---------------RGMARARLGQWEEAANDLHVASKLDYDEE 153
           I                    A+  +W++A   L +A+ +  +  
Sbjct: 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.8 bits (128), Expect = 6e-09
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
            K + A+  L +    NP +  +          L + + AI    +AL   P+  K ++ 
Sbjct: 90  QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA 149

Query: 125 RGMARARLGQWEEAANDLHVASKL--DYDEEIGMALK 159
              +  ++G+ EEA      A++L      E+ +  +
Sbjct: 150 IAFSYEQMGRHEEALPHFKKANELDEGASVELALVPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.1 bits (126), Expect = 1e-08
 Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           K +     G+   A+  L +    +     +       YVK    +        +L   P
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKL--DYDE---EIGMALKK 160
           D+ K   + G+   ++ +++ A   L   ++           +G+AL  
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN 122

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 6/61 (9%), Positives = 19/61 (31%)

Query: 78  IMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEE 137
           +  +    + Y  +   + K  + + A+       + +          G+A  + G  + 
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 138 A 138
            
Sbjct: 61  G 61

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.1 bits (121), Expect = 3e-08
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
              +G  ++AI    +A+ L+P SA  +      Y K    + AI     ALE +P SA+
Sbjct: 11  YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70

Query: 121 GYKIRGMARARLGQWEEAANDLHVASKL--DYDE---EIGMALKK 160
            +   G A  + G ++EA      A +L     E    +G A  K
Sbjct: 71  AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 115

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 48.5 bits (117), Expect = 1e-07
 Identities = 23/74 (31%), Positives = 36/74 (48%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
           G  ++AI    +A+ L+P SA  +      Y K    + AI     ALE +P SA+ +  
Sbjct: 49  GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 108

Query: 125 RGMARARLGQWEEA 138
            G A  + G ++EA
Sbjct: 109 LGNAYYKQGDYDEA 122

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 51.2 bits (122), Expect = 7e-08
 Identities = 15/129 (11%), Positives = 40/129 (31%), Gaps = 7/129 (5%)

Query: 49  DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPN-AAIRD 107
            +      K  D+  + ++E  + Q+ E +      A     +          +  A   
Sbjct: 68  HSVEDAGRKQQDV--QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVL 125

Query: 108 AYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEE----IGMALKKVEP 163
              A++  P+  + +   G    + G    A      A     ++     + M L++++ 
Sbjct: 126 LSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQT 185

Query: 164 NARRIQEHR 172
           ++       
Sbjct: 186 DSGDEHSRH 194

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 47.7 bits (113), Expect = 9e-07
 Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 12/130 (9%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYV-----------KLNKPNAAIRDAYVALE 113
             + D++ Q   A+ ++      +      Y+              +  +A   A     
Sbjct: 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252

Query: 114 TNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD-EEIGMALKKVEPNARRIQEHR 172
               +   +  R         + EA      A+ LD    E     +++     R+    
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312

Query: 173 RKYERLRKER 182
               + + ++
Sbjct: 313 ESKGKTKPKK 322

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 48.6 bits (116), Expect = 7e-08
 Identities = 10/87 (11%), Positives = 22/87 (25%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           + + ++    L +A           P     + +      +  K   AI     A   +P
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLH 143
                +    ++         A   L 
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLR 109

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD 117
            K   AI  L  A ML+P    ++AA A  +   +  NAA+      L + P 
Sbjct: 65  EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
           G+ + A   L +A+ L   +  + +A A +Y+ + + + A+     ALE  P        
Sbjct: 132 GERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVR 190

Query: 125 RGMARARLGQWEEAANDLHVASKLDY 150
              A    G+ EEAA    +     +
Sbjct: 191 YASALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.5 bits (114), Expect = 7e-07
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 11/100 (11%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
           L + G+ + A+     A+  NP         A   +KL   N A+ +    +   P    
Sbjct: 15  LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG 74

Query: 121 GYKIRGMA-----------RARLGQWEEAANDLHVASKLD 149
           GY +   A               G  E+A + L  A +++
Sbjct: 75  GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 1/88 (1%)

Query: 51  ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYV 110
             + +        +G LE A+  L +A  +NP  A L+  R  VY  L + + A      
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

Query: 111 ALETNPDSAKGYKIRGMARARLGQWEEA 138
           AL       +           +G+ +EA
Sbjct: 144 ALALEDT-PEIRSALAELYLSMGRLDEA 170

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 5/94 (5%)

Query: 88  YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASK 147
                     L + +AA+     AL+ NP   +        + +LG    A  +      
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67

Query: 148 L--DYDE---EIGMALKKVEPNARRIQEHRRKYE 176
               Y      +  A   +   A   +  +   E
Sbjct: 68  RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE 101

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
           G  ++AI    +A+ L+P +A  +      Y K    + AI     ALE +P++A+ +  
Sbjct: 23  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82

Query: 125 RGMARARLGQWEEAANDLHVASKL--DYDEE---IGMALKK 160
            G A  + G ++EA      A +L  +  E    +G A +K
Sbjct: 83  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 43.9 bits (105), Expect = 4e-06
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
           G  ++AI    +A+ L+P +A  +      Y K    + AI     ALE +P++A+  + 
Sbjct: 57  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116

Query: 125 RGMARARLG 133
            G A+ + G
Sbjct: 117 LGNAKQKQG 125

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 13/109 (11%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
            K   A     +++ LN     +    A +  K  +   A +   +  +    +A+   +
Sbjct: 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLL 214

Query: 125 RGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRR 173
                      + AA               G+ LK++ P +   QE + 
Sbjct: 215 GIRLAKVFEDRDTAA-------------SYGLQLKRLYPGSLEYQEFQA 250

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 21/81 (25%), Positives = 38/81 (46%)

Query: 58  AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD 117
            +  +  G  E A   L +A+ ++P+SA  +AA A V+    +P  A  +   AL ++  
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103

Query: 118 SAKGYKIRGMARARLGQWEEA 138
           +A+     G       ++EEA
Sbjct: 104 NARVLNNYGGFLYEQKRYEEA 124

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
           L+  G          +       +   Y      Y++      A      ALE +P SA 
Sbjct: 14  LVPRGSHMGDQ-NPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSAD 72

Query: 121 GYKIRGMARARLGQWEEA 138
            +    +      + + A
Sbjct: 73  AHAALAVVFQTEMEPKLA 90

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 11/91 (12%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALET--NPDS 118
             +E + + A  +  +A+  +  +A +     G   +  +   A +    A +    P+ 
Sbjct: 81  FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER 140

Query: 119 AKGYKIRGMARARLGQWEEAANDLHVASKLD 149
           ++ ++  G+   ++ +  +A      + +L+
Sbjct: 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 45  EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAA 104
           E+    +N+    A++ +       A   + +A+  +P + + +  RA +Y  L   + A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 105 IRDAYVALETNPDSAKGYKIRGMA-RARLGQWEEA 138
                 AL   PDSA+     G     RL +  E+
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAES 96

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 2/86 (2%)

Query: 65  GKLEDAIGQLTEAI--MLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGY 122
            +  +++    +A+     PT  I    +     K  +   A      +L   P     +
Sbjct: 91  NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF 150

Query: 123 KIRGMARARLGQWEEAANDLHVASKL 148
           K     +   GQ  +A          
Sbjct: 151 KELARTKMLAGQLGDADYYFKKYQSR 176

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTS-AILYAARAGVYVKLNKPNAAIRDAYVALETN 115
              +LI++G +E+A+  L E +   P      Y      Y KL     A+ +   A+E N
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

Query: 116 PDSA 119
           PDS 
Sbjct: 66  PDSP 69

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 47.4 bits (112), Expect = 9e-07
 Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 4/161 (2%)

Query: 46  EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL--NKPNA 103
              D+     +    L+   +L+ A  +L +    +  + +   A A V +     K   
Sbjct: 125 HQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184

Query: 104 AIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD-YDEEIGMALKKVE 162
           A        +    +      +       G+WE A   L  A   D    E  + L  + 
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS 244

Query: 163 PNARRIQEHRRKY-ERLRKERELKNFERERQRKQAGADREA 202
            +  +  E   +Y  +L+       F +E + K+   DR  
Sbjct: 245 QHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLV 285

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 9/126 (7%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYV----ALETNPDSAK 120
              ++AI  L +AI LNP +  L    A    K+ +      +       ALE  P    
Sbjct: 189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD 248

Query: 121 GYKIRGMARARLGQWEEAANDLHVASKLDYDE-----EIGMALKKVEPNARRIQEHRRKY 175
             +       R  + ++A   L  A +   +      +IG   +        ++E+    
Sbjct: 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308

Query: 176 ERLRKE 181
           +R   E
Sbjct: 309 KRKLLE 314

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 19/100 (19%), Positives = 37/100 (37%)

Query: 63  SEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGY 122
              +  +    + EA+   P    +  + A  Y + ++P+ AI     ALE  P++A  +
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284

Query: 123 KIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVE 162
              G              +  +  K    E IG A+  ++
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK 324

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 22/138 (15%)

Query: 58  AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK-------------------L 98
           A     + + + AI  L +A+   P +A L+      Y                     L
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313

Query: 99  NKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMAL 158
                A+     A E N +  +   I     A   Q+EEA          +       A 
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV---AK 370

Query: 159 KKVEPNARRIQEHRRKYE 176
           + +       Q ++ K E
Sbjct: 371 QLLHLRYGNFQLYQMKCE 388

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 10/100 (10%)

Query: 81  NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAAN 140
           +P       A A  ++K +  + A+      +ET+PD    Y   G    RL + ++A +
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 141 DLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRK 180
                         G+ + + E   + + E +    +   
Sbjct: 63  TY----------AQGIEVAREEGTQKDLSELQDAKLKAEG 92

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 12/75 (16%), Positives = 27/75 (36%)

Query: 58  AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD 117
           A + +       A+    E +  +P     Y     +Y +L++ + AI      +E   +
Sbjct: 14  AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73

Query: 118 SAKGYKIRGMARARL 132
                 +  +  A+L
Sbjct: 74  EGTQKDLSELQDAKL 88

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 45.5 bits (107), Expect = 6e-06
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 62  ISEGKLEDAIGQLTEAIML--NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA 119
           + E +L     ++   + L      +I+Y  +A   +   K + + +     ++    S 
Sbjct: 252 LDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SW 310

Query: 120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDEE 153
             Y + G      G   EAA+    A  L     
Sbjct: 311 LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 43.2 bits (101), Expect = 3e-05
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 63  SEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNA----------AIRDAYVAL 112
            +  L  A   L E +  +P      A +A V +  +  +              D  V L
Sbjct: 211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270

Query: 113 ETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
               + +  Y+I+ ++    G+ +E+   ++    L+
Sbjct: 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 46  EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAI 105
           E+ + + + ++KAV  + +GK +++   +   I L   S + Y     VY        A 
Sbjct: 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAA 330

Query: 106 RDAYVALETNPDSAKGYKIRGMA 128
                A    P +   Y I    
Sbjct: 331 DAYLTAFNLRPGANTLYWIENGI 353

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 9e-06
 Identities = 47/240 (19%), Positives = 73/240 (30%), Gaps = 61/240 (25%)

Query: 1   MKSNLSTEDDDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAAN----MTKL 56
            KS LS E+ D I+ S   +  T  +           +  V+   E     N    M+ +
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRL---FWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN----KPNAAIRDAYVAL 112
           K             I Q       N            V+ K N    +P   +R A   L
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQ-----------VFAKYNVSRLQPYLKLRQA--LL 145

Query: 113 ETNPDSAKGYKIRGMARARLG---QW--EEAANDLHVASKLDY------------DEEIG 155
           E  P  AK   I G+     G    W   +      V  K+D+             E + 
Sbjct: 146 ELRP--AKNVLIDGVL----GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 156 MALKK----VEPNARRIQEHRRKYERLRKE---RELKNFERERQRKQAGADREALSGLRD 208
             L+K    ++PN     +H     +LR      EL+   + +  +        L  L +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYE------NCLLVLLN 252

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 3/92 (3%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAA---RAGVYVKLNKPNAAIRDAYVALETNPDSAKG 121
           G    A+    +AI        L          +  L +   A       ++  P+    
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 122 YKIRGMARARLGQWEEAANDLHVASKLDYDEE 153
                M    LG++E+    L        D+E
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
           G  ++AI    +A+ L+P +A  +      Y K    + AI     ALE +P++A+  + 
Sbjct: 23  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82

Query: 125 RGMARARLG 133
            G A+ + G
Sbjct: 83  LGNAKQKQG 91

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 10/72 (13%), Positives = 24/72 (33%)

Query: 67  LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG 126
           L + +  +T  I   P +  ++  R  +   L  P+  +      L  +  +   ++ R 
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207

Query: 127 MARARLGQWEEA 138
                   W+  
Sbjct: 208 WVIQEFKLWDNE 219

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 1/90 (1%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKP-NAAIRDAYVALETNPDSA 119
           L  + + E A     +AI LN  +  ++  R  +   L K  +  +      +E  P + 
Sbjct: 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166

Query: 120 KGYKIRGMARARLGQWEEAANDLHVASKLD 149
           + +  R +    L    +    +      D
Sbjct: 167 QVWHHRRVLVEWLRDPSQELEFIADILNQD 196

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.9
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.84
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.83
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.82
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.82
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.82
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.81
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.8
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.8
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.79
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.79
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.79
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.79
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.78
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.78
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.78
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.78
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.78
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.77
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.77
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.76
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.76
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.76
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.75
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.75
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.75
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.74
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.74
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.73
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.73
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.73
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.72
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.71
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.71
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.7
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.7
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.7
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.7
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.69
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.69
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.69
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.69
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.69
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.68
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.68
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.68
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.67
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.66
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.66
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.66
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.66
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.66
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.66
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.65
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.65
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.65
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.65
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.65
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.65
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.64
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.64
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.64
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.64
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.63
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.63
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.63
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.63
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.62
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.62
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.62
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.62
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.62
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.62
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.61
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.61
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.61
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.61
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.6
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.59
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.59
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.59
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.59
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.58
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.58
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.58
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.57
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.57
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.57
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.56
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.56
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.56
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.55
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.55
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.55
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.54
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.54
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.54
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.53
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.53
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.53
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.52
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.52
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.51
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.51
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.51
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.51
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.5
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.5
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.5
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.5
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.49
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.48
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.47
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.47
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.47
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.47
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.46
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.46
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.45
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.45
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.44
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.44
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.44
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.43
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.42
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.4
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.4
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.4
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.4
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.4
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.39
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.39
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.38
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.38
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.37
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.37
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.37
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.36
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.36
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.35
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.35
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.35
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.35
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.35
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.34
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.34
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.34
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.34
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.34
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.34
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.33
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.33
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.32
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.31
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.31
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.3
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.3
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.29
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.29
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.27
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.26
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.25
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.25
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.25
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.24
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.24
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.24
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.23
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.23
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.22
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.21
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.2
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.2
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.2
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.2
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.19
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.15
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.12
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.08
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.08
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.07
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.07
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.05
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.03
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.99
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.97
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.94
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.9
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.86
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.85
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.84
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.81
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.79
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.77
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.77
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.74
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.71
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.69
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.66
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.64
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.63
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.62
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.61
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.6
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.58
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.39
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.37
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.32
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.31
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.22
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.19
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.19
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.11
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.08
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.08
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.04
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.99
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.99
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.94
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.71
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.69
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.68
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.62
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.52
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.22
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.06
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.04
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.97
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.82
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.61
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.37
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.26
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.2
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.04
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.64
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.38
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.73
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.71
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.18
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.14
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.47
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.33
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	93.01
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.72
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.7
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.36
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.13
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.25
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	88.0
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	87.97
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	87.52
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	87.5
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	87.04
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	86.32
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	86.22
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	85.24
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	83.07
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	82.22
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	81.54
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	81.5

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.90  E-value=4.4e-22  Score=142.96  Aligned_cols=115  Identities=23%  Similarity=0.341  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      +|..++.++.+|+.+++.|+|++|+..|++++.++|.++.+|+++|.++..+|++++|+.+|+++++++|+++.+|+++|
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg   88 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA   88 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKV  161 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~  161 (227)
                      .++..+|++++|+.+|+++++++|++ .+...++.+
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            99999999999999999999999999 666666554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.84  E-value=1.2e-19  Score=134.30  Aligned_cols=108  Identities=16%  Similarity=0.054  Sum_probs=104.3

Q ss_pred             HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      ..++.+..++.+|..++..|+|++|+..|++++.++|+++.+|+++|.++...|++++|+..|++++.++|+++.+|+++
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 041967          126 GMARARLGQWEEAANDLHVASKLDYDEE  153 (227)
Q Consensus       126 a~~~~~~g~~~~A~~~~~~a~~~~p~~~  153 (227)
                      |.+|..+|++++|+.+|++++.+.|+.+
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999874

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.83  E-value=3.2e-19  Score=128.00  Aligned_cols=112  Identities=22%  Similarity=0.193  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-------H
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-------K  120 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------~  120 (227)
                      .+.+.++..+|+.+++.|+|++|+.+|+++|.++|+++.+|+++|.+|+.+|++++|+.+|++++.++|.+.       .
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999999999999988763       5


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 041967          121 GYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALK  159 (227)
Q Consensus       121 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~  159 (227)
                      +|+++|.++..+|+++.|+.+|++++...|+.+....+.
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~  123 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVK  123 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHH
Confidence            899999999999999999999999999999875554443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=6.8e-19  Score=125.21  Aligned_cols=113  Identities=25%  Similarity=0.320  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++..|..++..|+|++|+..|.+++..+|+++.+|+++|.+++..|++++|+.+|++++.++|+++.+|+.+|.++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcC------CCh-HHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLD------YDE-EIGMALKKVE  162 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~------p~~-~~~~~l~~~~  162 (227)
                      ..+|++++|+.+|++++.++      |.+ .++..+..+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            99999999999999999999      877 5555655554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.82  E-value=2.8e-19  Score=131.87  Aligned_cols=120  Identities=11%  Similarity=-0.079  Sum_probs=107.2

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      .+..+..++.+|.+++..|+|++|+.+|++++.++|+++.+|+++|.+|...|++++|+..|+++++++|+++.+|+.+|
T Consensus        27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  106 (150)
T 4ga2_A           27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIA  106 (150)
T ss_dssp             HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHH-HHHHHhcCCCh-HHHHHHHHHHHhhh
Q 041967          127 MARARLGQWEEAAND-LHVASKLDYDE-EIGMALKKVEPNAR  166 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~-~~~a~~~~p~~-~~~~~l~~~~~~~~  166 (227)
                      .++...|++++|... ++++++++|++ .++...+.+....|
T Consensus       107 ~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A          107 ELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            999999999877665 58999999998 55666666665554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.82  E-value=5.9e-19  Score=160.30  Aligned_cols=137  Identities=18%  Similarity=0.124  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      ++.++++.++|.++...|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..+|+++|.
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~   85 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN   85 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ++..+|++++|+.+|+++++++|++ .++.+++.++...|++++|...|+++.+..+.
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~  143 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD  143 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999998 77889999999999999999999888877654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.81  E-value=8e-19  Score=136.99  Aligned_cols=133  Identities=18%  Similarity=0.147  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++.+|..++..|++++|+..|++++..+|+++.+++++|.++...|++++|+..|++++.++|+++.+++.+|.++
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~   83 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY   83 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            35677778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHc-----------CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          130 ARL-----------GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       130 ~~~-----------g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      ...           |++++|+..|+++++++|++ .++..++.++...|++.+|...++++.+..
T Consensus        84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A           84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            888           88888888888888888877 667777888888888888888777766544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.80  E-value=1.2e-18  Score=129.51  Aligned_cols=117  Identities=18%  Similarity=0.229  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIML------------------NPTSAILYAARAGVYVKLNKPNAAIRDAYV  110 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~  110 (227)
                      ..+..+...|+.++..|+|++|+..|.+++.+                  +|..+.+|+++|.||+.+|++++|+.+|++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            46899999999999999999999999999999                  777789999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-H-HHHHHHHHHhh
Q 041967          111 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEE-I-GMALKKVEPNA  165 (227)
Q Consensus       111 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~-~~~l~~~~~~~  165 (227)
                      ++.++|.++.+|+++|.++..+|++++|+.+|.+++.++|++. . ...+..+....
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999984 3 33555444433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.80  E-value=5.5e-18  Score=127.93  Aligned_cols=135  Identities=17%  Similarity=0.155  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..|+.+|.+++..|+|++|+..|+++++++|+++.+++.+|.++...|++++|+..+.+++..+|.+..++..+|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999998888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ...++++.|...+.+++.++|.+ .++..++.++...|++.+|...+++..+..+.
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~  139 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG  139 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence            88888888888888888888887 66778888888888888888888877776554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.79  E-value=7.8e-19  Score=129.98  Aligned_cols=111  Identities=20%  Similarity=0.153  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCcHHHHHHHHHHHHh-
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-------SAI-----LYAARAGVYVKLNKPNAAIRDAYVALET-  114 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~~g~~~~~~~~~~~A~~~~~~al~~-  114 (227)
                      ...+..++..|+.++..|+|++|+..|+++|.++|+       +..     +|.++|.++..+|+|++|+.+|+++|.+ 
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            347889999999999999999999999999999999       444     9999999999999999999999999999 


Q ss_pred             ------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHH
Q 041967          115 ------NPDSAKGY----KIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMAL  158 (227)
Q Consensus       115 ------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l  158 (227)
                            +|++..+|    +++|.++..+|++++|+.+|++++.++|++ .+...+
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~  142 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK  142 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence                  99999999    999999999999999999999999999987 443333

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.79  E-value=4.7e-18  Score=123.76  Aligned_cols=106  Identities=14%  Similarity=0.086  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      .+.....++..|..++..|+|++|+..|.+++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   93 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA   93 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      .++..+|++++|+.+|++++.++|++
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARALAAAQ  119 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999876

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.79  E-value=4.7e-18  Score=126.52  Aligned_cols=104  Identities=19%  Similarity=0.289  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ..+..++.+|..++..|+|++|+.+|.+++.++|.++.+|+++|.+|+..|++++|+.+|++++.++|+++.+|+.+|.+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      +..+|++++|+.+|++++.++|++
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p~~  112 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEGNG  112 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCc
Confidence            999999999999999999999998

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.79  E-value=8.1e-18  Score=131.26  Aligned_cols=135  Identities=22%  Similarity=0.195  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCcHHHHHHHHHHHHhCCC
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL-----------NKPNAAIRDAYVALETNPD  117 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al~~~p~  117 (227)
                      ..+..++.+|.++...|++++|+..|++++.++|+++.+++++|.++...           |++++|+..|++++.++|+
T Consensus        37 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~  116 (217)
T 2pl2_A           37 QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR  116 (217)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc
Confidence            45789999999999999999999999999999999999999999999999           9999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          118 SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       118 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ++.+++.+|.++..+|++++|+..|++++.++ ++ .++..++.++...|++.+|...+++..+..+.
T Consensus       117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  183 (217)
T 2pl2_A          117 YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK  183 (217)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999 66 77889999999999999999999999877665

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.78  E-value=3.1e-17  Score=136.41  Aligned_cols=136  Identities=22%  Similarity=0.228  Sum_probs=125.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHH
Q 041967           45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---------------AILYAARAGVYVKLNKPNAAIRDAY  109 (227)
Q Consensus        45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~g~~~~~~~~~~~A~~~~~  109 (227)
                      ...+..+..++.+|..++..|+|++|+.+|.+++.++|.+               ..+|+++|.|++..|++++|+.+|+
T Consensus       141 ~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  220 (336)
T 1p5q_A          141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN  220 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3455678999999999999999999999999999999998               6999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHH-HHHHHHH
Q 041967          110 VALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRR-KYERLRK  180 (227)
Q Consensus       110 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~-~~~~~~~  180 (227)
                      +++.++|+++.+|+++|.+|..+|++++|+.+|++++.++|++ .++..++.++...+++.++.. .|.++..
T Consensus       221 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999 778899999999999998844 4455543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.78  E-value=1.8e-19  Score=132.91  Aligned_cols=128  Identities=11%  Similarity=0.039  Sum_probs=116.0

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 041967           57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWE  136 (227)
Q Consensus        57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  136 (227)
                      +|..+..+|++++|+..|++++..+|.++.+++.+|.+|+..|++++|+..|+++++++|+++.+|+.+|.++..+|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            57778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHh
Q 041967          137 EAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKY-ERLRKEREL  184 (227)
Q Consensus       137 ~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~  184 (227)
                      +|+.+|+++++++|++ .++..++.++...|++.++...+ +++.+..+.
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~  132 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG  132 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence            9999999999999998 88889999999999988776664 777776665

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.78  E-value=4.8e-18  Score=125.04  Aligned_cols=106  Identities=14%  Similarity=0.087  Sum_probs=102.6

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      .+.....++..|..++..|+|++|+..|.+++..+|.++.+|+++|.++...|++++|+..|++++.++|+++.+++.+|
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   96 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA   96 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            35578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      .++..+|++++|+.+|++++.++|++
T Consensus        97 ~~~~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           97 ECLLQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            99999999999999999999999886

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.78  E-value=1.1e-16  Score=117.92  Aligned_cols=134  Identities=25%  Similarity=0.315  Sum_probs=119.5

Q ss_pred             HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      .....+..++..|..++..|+|++|+..|.+++..+|.++.+++++|.++...|++++|+..+++++.++|.++.+++.+
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   87 (166)
T 1a17_A            8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   87 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            33457899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH--HHhhhhHHHHHHHHHHHH
Q 041967          126 GMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKV--EPNARRIQEHRRKYERLR  179 (227)
Q Consensus       126 a~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~--~~~~~~~~~a~~~~~~~~  179 (227)
                      |.++..+|++++|+.+|.+++.++|.+ ..+..++..  ....|++.+|...+....
T Consensus        88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           88 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            999999999999999999999999998 555444333  566777777777765543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.78  E-value=5.4e-18  Score=143.51  Aligned_cols=138  Identities=14%  Similarity=0.060  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK-PNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      .+..+.++..+|.++...|++++|+..|.++|.++|++..+|+++|.++..+|+ +++|+.+|++++.++|++..+|+.+
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~  172 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  172 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            445788999999999999999999999999999999999999999999999996 9999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          126 GMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       126 a~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      |.++..+|++++|+.+|++++.++|++ .+|..++.++...|++.+|...++++.+..+.
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~  232 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  232 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999998 88889999999999999999999888876653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.78  E-value=1.7e-17  Score=128.52  Aligned_cols=118  Identities=17%  Similarity=0.095  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCcHHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAA----------------RAGVYVKLNKPNAAIRDAYVALE  113 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------~g~~~~~~~~~~~A~~~~~~al~  113 (227)
                      .++.++..|..++..|+|++|+.+|.+++..+|+++.+++.                +|.++...|++++|+..|++++.
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhh
Q 041967          114 TNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARR  167 (227)
Q Consensus       114 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~  167 (227)
                      ++|+++.+++.+|.++...|++++|+.+|++++.++|++ .++..++.++...++
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            999999999999999999999999999999999999998 778888888765543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.77  E-value=1.3e-17  Score=151.50  Aligned_cols=136  Identities=21%  Similarity=0.149  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      +.+.+++++|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+|+++|.+
T Consensus        41 ~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~  120 (723)
T 4gyw_A           41 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI  120 (723)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      |..+|++++|+.+|+++++++|++ .++..++.++...|++.+|...++++....+.
T Consensus       121 ~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          121 HKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence            999999999999999999999999 78889999999999999999999888766543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.77  E-value=3.8e-17  Score=123.27  Aligned_cols=137  Identities=16%  Similarity=0.144  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      ++.+.+++.+|.+++..|++++|+..+.+++...|+++.++..+|.++...++++.|+..+.+++.++|.+..+++.+|.
T Consensus        36 p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~  115 (184)
T 3vtx_A           36 PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGL  115 (184)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ++..+|++++|+..|+++++++|.+ .++..++.++...|++.+|...|+++.+..+.
T Consensus       116 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          116 VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            9999999999999999999999999 78889999999999999999999998876654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.76  E-value=4.3e-17  Score=127.22  Aligned_cols=134  Identities=15%  Similarity=0.076  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNP-TSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      +..++..|..++..|+|++|+..|.+++..+| .+..+++++|.++...|++++|+..|++++..+|.+..+++.+|.++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            48899999999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCChH-H-------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          130 ARLGQWEEAANDLHVASKLDYDEE-I-------GMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~~-~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ..+|++++|+..|++++.++|++. .       +..++.+....|++.+|...++++.+..+.
T Consensus        87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A           87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999974 2       568888999999999999999888765443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.76  E-value=7.8e-17  Score=125.75  Aligned_cols=119  Identities=17%  Similarity=0.102  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-------HHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-------KGY  122 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~  122 (227)
                      ....++.+|.+++..|+|++|+..|.+++..+|+++.+++.+|.++...|++++|+..|++++.++|+++       .+|
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  120 (228)
T 4i17_A           41 DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYY  120 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            3467888999999999999999999999999999999999999999999999999999999999999999       679


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCC--h-HHHHHHHHHHHhhhhH
Q 041967          123 KIRGMARARLGQWEEAANDLHVASKLDYD--E-EIGMALKKVEPNARRI  168 (227)
Q Consensus       123 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~-~~~~~l~~~~~~~~~~  168 (227)
                      +.+|.++..+|++++|+..|++++.++|+  + .++..++.++...|..
T Consensus       121 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          121 LKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999  7 7788889888877776

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.76  E-value=5.4e-17  Score=116.40  Aligned_cols=114  Identities=28%  Similarity=0.351  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++..|..++..|+|++|+.+|.+++..+|.++.+++++|.+++..|++++|+..|++++.++|.++.+++.+|.++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC-----h-HHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYD-----E-EIGMALKKVEP  163 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~-----~-~~~~~l~~~~~  163 (227)
                      ..+|++++|+..|.+++.++|+     + .+...+..+..
T Consensus        88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987     4 44445544443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.75  E-value=9.3e-17  Score=123.05  Aligned_cols=128  Identities=20%  Similarity=0.194  Sum_probs=117.1

Q ss_pred             HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCcHHHHHHH
Q 041967           45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA----------------ILYAARAGVYVKLNKPNAAIRDA  108 (227)
Q Consensus        45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~g~~~~~~~~~~~A~~~~  108 (227)
                      ......+..++..|..++..|+|++|+..|.+++.+.|.++                .+++++|.+++..|++++|+.+|
T Consensus        32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  111 (198)
T 2fbn_A           32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA  111 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            34456788999999999999999999999999999999887                89999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHH
Q 041967          109 YVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHR  172 (227)
Q Consensus       109 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~  172 (227)
                      ++++.++|.++.+++.+|.++..+|++++|+.+|++++.++|++ .++..++.+....++..++.
T Consensus       112 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          112 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998 77778888888777766655

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.75  E-value=7e-17  Score=139.70  Aligned_cols=131  Identities=20%  Similarity=0.239  Sum_probs=119.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHH
Q 041967           45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---------------AILYAARAGVYVKLNKPNAAIRDAY  109 (227)
Q Consensus        45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~g~~~~~~~~~~~A~~~~~  109 (227)
                      ...+..+..++.+|+.++..|+|++|+..|.+++.++|.+               ..+|+++|.||+++|++++|+.+|+
T Consensus       262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  341 (457)
T 1kt0_A          262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD  341 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3455778999999999999999999999999999999998               7899999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHH
Q 041967          110 VALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKY  175 (227)
Q Consensus       110 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~  175 (227)
                      +++.++|++..+|+++|.+|..+|++++|+.+|+++++++|++ .++..++.++...+++.++....
T Consensus       342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~  408 (457)
T 1kt0_A          342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI  408 (457)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998 77889999999999888776654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.75  E-value=2.7e-16  Score=110.80  Aligned_cols=122  Identities=29%  Similarity=0.336  Sum_probs=114.0

Q ss_pred             HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      ..+..+..++..|..++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..+++++..+|.++.+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhh
Q 041967          126 GMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARR  167 (227)
Q Consensus       126 a~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~  167 (227)
                      |.++...|++++|+..|++++.++|.+ ..+..++.++...|+
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            999999999999999999999999988 667788877776665

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.74  E-value=4e-17  Score=116.00  Aligned_cols=101  Identities=10%  Similarity=-0.018  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR  131 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  131 (227)
                      ..++..|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCh
Q 041967          132 LGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       132 ~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      .|++++|+..|++++.++|.+
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-----
T ss_pred             cCCHHHHHHHHHHHHHhCcCC
Confidence            999999999999999999975

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.74  E-value=1.3e-16  Score=113.16  Aligned_cols=117  Identities=27%  Similarity=0.334  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ...+++.+|..++..|+|++|+.+|.+++..+|.++.+++++|.++...|++++|+..+++++..+|.+..+++.+|.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNAR  166 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~  166 (227)
                      ...|++++|+.+|++++.++|.+ .++..++.++...|
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            99999999999999999999998 77777777766544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.73  E-value=4.4e-16  Score=107.81  Aligned_cols=112  Identities=28%  Similarity=0.423  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++..|..++..|+|++|+..|.+++..+|.++.+++.+|.++...|++++|+..+++++..+|.++.+++.+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKV  161 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~  161 (227)
                      ...|++++|...|++++.++|++ ..+..++.+
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            99999999999999999999998 555555554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.73  E-value=3e-17  Score=138.95  Aligned_cols=136  Identities=14%  Similarity=0.083  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGK-LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      ....+|+.+|.++...|+ +++|+..|++++.++|+++.+|+++|.++..+|++++|+.+|+++|.++|++..+|+++|.
T Consensus       129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~  208 (382)
T 2h6f_A          129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW  208 (382)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHH
Confidence            457889999999999996 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh-hhhHHHH-----HHHHHHHHHHHHh
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPN-ARRIQEH-----RRKYERLRKEREL  184 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~  184 (227)
                      ++..+|++++|+.+|.+++.++|++ .+|..++.++.. .|...+|     ...+.++....+.
T Consensus       209 ~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~  272 (382)
T 2h6f_A          209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH  272 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999 889999999988 4543666     3666676665553

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.73  E-value=1.1e-17  Score=123.84  Aligned_cols=113  Identities=9%  Similarity=-0.100  Sum_probs=108.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967           72 GQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD  151 (227)
Q Consensus        72 ~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  151 (227)
                      ..|.+++.++|+++.+++++|.+++..|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+.+|++++.++|+
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            55788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          152 E-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       152 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      + .++..++.++...|++.+|...|+++.+..+.
T Consensus       103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9 88999999999999999999999999887665

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.72  E-value=1.2e-16  Score=114.37  Aligned_cols=109  Identities=19%  Similarity=0.194  Sum_probs=102.1

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HH
Q 041967           76 EAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EI  154 (227)
Q Consensus        76 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~  154 (227)
                      ++..++|..+..+.++|.++++.|+|++|+..|+++++++|.++.+|+++|.++..+|++++|+..|.++++++|++ .+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            34457899999999999999999999999999999999999999999999999999999999999999999999999 88


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          155 GMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       155 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      +..++.++...|++.+|...|+++.+..+.
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~  113 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQVDPS  113 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence            889999999999999999999999887775

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.71  E-value=8.1e-16  Score=108.54  Aligned_cols=130  Identities=23%  Similarity=0.212  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR  131 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  131 (227)
                      ..++.+|..++..|++++|+..|.+++..+|.+..+++.+|.++...|++++|+..+++++..+|.++.+++.+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          132 LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       132 ~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      .|++++|+..|.+++...|.+ ..+..++.++...|++.+|...+.+....
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            999999999999999999988 77889999999999999999998877654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.71  E-value=2.7e-15  Score=111.79  Aligned_cols=133  Identities=17%  Similarity=0.214  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      ...++..|..++..|++++|+.+|.+++..+|.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~  121 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD  121 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH
Confidence            45566666667777777777777777777666666667777777777777777777777777777777667777777777


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ..|++++|+..|.+++...|.+ .++..++.++...|++.+|...+++.....+
T Consensus       122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  175 (186)
T 3as5_A          122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE  175 (186)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            7777777777777777776666 5556666666666666666666666554443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.70  E-value=2.3e-15  Score=119.65  Aligned_cols=134  Identities=15%  Similarity=0.068  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      +..+..++.+|..++..|++++|+.+|.+++..+|.++.++..+|.++...|++++|+..|++++.++|.++.+++.+|.
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  119 (275)
T 1xnf_A           40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  119 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      ++...|++++|+..|++++.++|++........+....|++.++...+.+....
T Consensus       120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A          120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            999999999999999999999999855444444556779999999988666544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.70  E-value=4.4e-16  Score=131.26  Aligned_cols=128  Identities=19%  Similarity=0.233  Sum_probs=117.3

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIM----------------LNPTSAILYAARAGVYVKLNKPNAAIRDAYV  110 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~  110 (227)
                      ....+..++.+|..++..|+|++|+..|++++.                .+|.++.+|+++|.+++.+|++++|+.+|++
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  298 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  298 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            345678899999999999999999999999998                7788889999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHH
Q 041967          111 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRK  174 (227)
Q Consensus       111 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~  174 (227)
                      ++.++|+++.+|+++|.+|..+|++++|+.+|+++++++|++ .++..++.+....++..++...
T Consensus       299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998 6777888888777776665543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.70  E-value=5.5e-16  Score=123.56  Aligned_cols=134  Identities=11%  Similarity=0.036  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYK  123 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~  123 (227)
                      .+..++..|..++..|+|++|+..|++++..+|.+   +.+++.+|.+++..|++++|+..|++++..+|++   +.+++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            47899999999999999999999999999999998   8999999999999999999999999999998865   67899


Q ss_pred             HHHHHHHH--------cCCHHHHHHHHHHHHhcCCCh-HHH-----------------HHHHHHHHhhhhHHHHHHHHHH
Q 041967          124 IRGMARAR--------LGQWEEAANDLHVASKLDYDE-EIG-----------------MALKKVEPNARRIQEHRRKYER  177 (227)
Q Consensus       124 ~la~~~~~--------~g~~~~A~~~~~~a~~~~p~~-~~~-----------------~~l~~~~~~~~~~~~a~~~~~~  177 (227)
                      .+|.++..        .|++++|+..|++++..+|++ ...                 ..++.++...|++.+|...+++
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  173 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA  173 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999999        999999999999999999987 444                 5779999999999999999999


Q ss_pred             HHHHHH
Q 041967          178 LRKERE  183 (227)
Q Consensus       178 ~~~~~~  183 (227)
                      +.+..+
T Consensus       174 ~l~~~p  179 (261)
T 3qky_A          174 VFDAYP  179 (261)
T ss_dssp             HHHHCT
T ss_pred             HHHHCC
Confidence            887654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.70  E-value=1.2e-15  Score=118.19  Aligned_cols=128  Identities=13%  Similarity=-0.010  Sum_probs=111.7

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 041967           57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ--  134 (227)
Q Consensus        57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--  134 (227)
                      +|.+++..|++++|+..|++++.++|+++.+++++|.++...|++++|+..|++++.++|+++.+|+.+|.+|...|.  
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987765  


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          135 WEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       135 ~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ...+...|.+++...|....+..++......|++.+|...++++.+..+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            45567788887655444445667788888899999999999999877665

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=2.5e-15  Score=117.98  Aligned_cols=133  Identities=17%  Similarity=0.165  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCcHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIM--------------------------LNPTSAILYAARAGVYVKLNKPNAA  104 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~~g~~~~~~~~~~~A  104 (227)
                      +..++.+|..+...|++++|+.+|.+++.                          .+|.++.++..+|.++...|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            68999999999999999999999999999                          6667788999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          105 IRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       105 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      +..|++++..+|.++.+++.+|.++...|++++|+..|.+++..+|++ ..+..++.++...|++.+|...+++..+..+
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  238 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA  238 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence            999999999999999999999999999999999999999999999998 7788999999999999999999998887663

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.69  E-value=1e-15  Score=108.55  Aligned_cols=102  Identities=18%  Similarity=0.120  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA---ILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIR  125 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l  125 (227)
                      ..++..|..++..|+|++|+..|.+++..+|+++   .+++.+|.+++..|++++|+..|++++..+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            4578899999999999999999999999999987   799999999999999999999999999999999   8999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCChH
Q 041967          126 GMARARLGQWEEAANDLHVASKLDYDEE  153 (227)
Q Consensus       126 a~~~~~~g~~~~A~~~~~~a~~~~p~~~  153 (227)
                      |.++..+|++++|+..|++++...|++.
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~  110 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSD  110 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence            9999999999999999999999999873

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=8.8e-16  Score=110.95  Aligned_cols=113  Identities=25%  Similarity=0.318  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      .+..++..|..++..|+|++|+.+|++++..+|++   ..+++++|.++...|++++|+..|++++.++|.++.+++.+|
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            57889999999999999999999999999999987   899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVE  162 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~  162 (227)
                      .++..+|++++|+.+|++++.++|++ .++..+..+.
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            99999999999999999999999998 5566665554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.69  E-value=1.1e-15  Score=107.67  Aligned_cols=117  Identities=17%  Similarity=0.158  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-------HHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-------AKGY  122 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~  122 (227)
                      .+..++.+|..++..|+|++|+.+|.+++..+|.++.+++++|.++...|++++|+..|++++...|.+       ..++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            568899999999999999999999999999999999999999999999999999999999999999887       8999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhh
Q 041967          123 KIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNAR  166 (227)
Q Consensus       123 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~  166 (227)
                      +.+|.++...|++++|+.+|++++.+.|+......+..+....+
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999996566666665554443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.69  E-value=4.3e-15  Score=103.62  Aligned_cols=115  Identities=23%  Similarity=0.273  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++..|..++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..+++++..+|.++.+++.+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPN  164 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~  164 (227)
                      ...|++++|+..|.+++.++|.+ .....++.+...
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            99999999999999999999998 556666666543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.68  E-value=2.5e-16  Score=115.73  Aligned_cols=115  Identities=10%  Similarity=-0.026  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 041967           70 AIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD  149 (227)
Q Consensus        70 A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  149 (227)
                      +-..|.+++.++|.+..+++++|.+++..|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+.+|.+++.++
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          150 YDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       150 p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      |++ ..+..++.++...|++.+|...+++..+..+.
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            998 88889999999999999999999998877654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.68  E-value=5e-15  Score=113.92  Aligned_cols=132  Identities=15%  Similarity=0.120  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++.+|..++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~   86 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL   86 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHc-CCHHHHHHHHHHHHh--cCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          130 ARL-GQWEEAANDLHVASK--LDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       130 ~~~-g~~~~A~~~~~~a~~--~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      ... |++++|+..|++++.  ..|.+ ..+..++.++...|++.+|...+.+..+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  142 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA  142 (225)
T ss_dssp             HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            555 555555555555555  33443 34445555555555555555555554443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.68  E-value=1.5e-16  Score=132.35  Aligned_cols=139  Identities=27%  Similarity=0.332  Sum_probs=98.1

Q ss_pred             HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCcHHHHHH
Q 041967           45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA-----------------ILYAARAGVYVKLNKPNAAIRD  107 (227)
Q Consensus        45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~g~~~~~~~~~~~A~~~  107 (227)
                      ......+..++..|+.++..|+|++|+.+|.+++...|.+.                 .+|+++|.||+.+|++++|+.+
T Consensus       173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~  252 (338)
T 2if4_A          173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34556789999999999999999999999999999999876                 4899999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHH
Q 041967          108 AYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEP-NARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       108 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~  183 (227)
                      |++++.++|++..+|+++|.+|..+|++++|+.+|++++.++|++ .++..+..+.. ..+....++..|.++....+
T Consensus       253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p  330 (338)
T 2if4_A          253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD  330 (338)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999999999999999999999998 66667777643 34445556666666655444

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.67  E-value=3.3e-15  Score=116.58  Aligned_cols=135  Identities=20%  Similarity=0.152  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      .....++.+|..++..|++++|+..|.+++..+|.+..++..+|.++...|++++|+..+++++..+|.+..+++.+|.+
T Consensus        55 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~  134 (243)
T 2q7f_A           55 EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTV  134 (243)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      +...|++++|+..|.+++...|.+ ..+..++.++...|++.+|...+++..+..+
T Consensus       135 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  190 (243)
T 2q7f_A          135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP  190 (243)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT
T ss_pred             HHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            999999999999999999999988 7788999999999999999999988876644

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.67  E-value=4.6e-15  Score=110.50  Aligned_cols=135  Identities=14%  Similarity=0.096  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++..|..++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ...|++++|...|.+++...|.+ ..+..++.++...|++.+|...+++..+..+.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  142 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN  142 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc
Confidence            99999999999999999999998 77889999999999999999999888766543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.66  E-value=5.8e-15  Score=121.09  Aligned_cols=134  Identities=21%  Similarity=0.233  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .++.++..|..++..|+|++|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|++..+++.+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCC---Ch-HHHHHH------------HHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDY---DE-EIGMAL------------KKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p---~~-~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ...|++++|+..|++++.++|   .+ ..+..+            +.++...|++.+|...++++.+..+
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  151 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV  151 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999   76 555555            5788899999999999988876654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.66  E-value=2.5e-15  Score=132.85  Aligned_cols=137  Identities=16%  Similarity=0.008  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      +..+..++.+|..++..|+|++|+..|++++..+|+++.+++++|.++...|++++|+..|++++.++|++..+++.+|.
T Consensus        20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   99 (568)
T 2vsy_A           20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH   99 (568)
T ss_dssp             -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHh
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA---RRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~  184 (227)
                      ++..+|++++|+..|+++++++|++ ..+..++.++...   |++.+|...+++..+..+.
T Consensus       100 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~  160 (568)
T 2vsy_A          100 ALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG  160 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence            9999999999999999999999998 7788999999999   9999999999888776553

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.66  E-value=6.7e-15  Score=113.17  Aligned_cols=131  Identities=13%  Similarity=0.092  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++..|..++..|+|++|+..|.+++  +| ++.+++++|.++...|++++|+..|++++.++|.++.+++.+|.++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            45678999999999999999999999996  44 7899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-----------------EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ..+|++++|+..|++++.+.|.+                 .++..++.++...|++.+|...++++.+..+
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence            99999999999999999988763                 4677999999999999999999998887655

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.66  E-value=6.5e-15  Score=114.88  Aligned_cols=135  Identities=16%  Similarity=0.087  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ....+..+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|.+..+++.+|.++
T Consensus        90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  169 (243)
T 2q7f_A           90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL  169 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ...|++++|+..|.+++...|.+ .++..++.++...|++.+|...++++.+..+.
T Consensus       170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  225 (243)
T 2q7f_A          170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD  225 (243)
T ss_dssp             HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence            99999999999999999999998 77889999999999999999999888776554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.66  E-value=1.5e-15  Score=131.79  Aligned_cols=133  Identities=17%  Similarity=0.099  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKL-EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      .+..++.+|..++..|+| ++|+.+|++++.++|+++.+|+++|.+|...|++++|+..|++++.++|+ ..+++.+|.+
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~  179 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMV  179 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHH
Confidence            467899999999999999 99999999999999999999999999999999999999999999999999 7999999999


Q ss_pred             HHHc---------CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHH
Q 041967          129 RARL---------GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA--------RRIQEHRRKYERLRKERE  183 (227)
Q Consensus       129 ~~~~---------g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~  183 (227)
                      +..+         |++++|+..|++++.++|++ ..+..++.++...        |++.+|...|+++.+..+
T Consensus       180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p  252 (474)
T 4abn_A          180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR  252 (474)
T ss_dssp             HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence            9999         99999999999999999998 8888999999999        999999999999988765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.66  E-value=4.6e-15  Score=118.18  Aligned_cols=134  Identities=16%  Similarity=0.027  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHhCCCCH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVK--------LNKPNAAIRDAYVALETNPDSA  119 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~--------~~~~~~A~~~~~~al~~~p~~~  119 (227)
                      ..+++.+|.+++..|+|++|+..|++++..+|++   +.+++.+|.+++.        .|++++|+..|++++..+|+++
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            7899999999999999999999999999998854   6789999999999        9999999999999999999987


Q ss_pred             HHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhh----------hhH
Q 041967          120 KGY-----------------KIRGMARARLGQWEEAANDLHVASKLDYDE----EIGMALKKVEPNA----------RRI  168 (227)
Q Consensus       120 ~~~-----------------~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~l~~~~~~~----------~~~  168 (227)
                      .++                 +.+|.+|...|++++|+..|++++...|++    .++..++.++...          |++
T Consensus       132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~  211 (261)
T 3qky_A          132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERY  211 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchH
Confidence            655                 889999999999999999999999999983    4567888888766          889


Q ss_pred             HHHHHHHHHHHHHHHh
Q 041967          169 QEHRRKYERLRKEREL  184 (227)
Q Consensus       169 ~~a~~~~~~~~~~~~~  184 (227)
                      .+|...++++.+..+.
T Consensus       212 ~~A~~~~~~~~~~~p~  227 (261)
T 3qky_A          212 RRAVELYERLLQIFPD  227 (261)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            9999999998877664

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.65  E-value=3.7e-15  Score=116.54  Aligned_cols=134  Identities=14%  Similarity=0.035  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH---HHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK---GYKI  124 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~  124 (227)
                      +..++.+|..++..|+|++|+..|++++..+|.+   ..+++.+|.+++..|++++|+..|++++..+|+++.   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            5789999999999999999999999999999986   468999999999999999999999999999999864   8999


Q ss_pred             HHHHHHH------------------cCCHHHHHHHHHHHHhcCCCh-HHH-----------------HHHHHHHHhhhhH
Q 041967          125 RGMARAR------------------LGQWEEAANDLHVASKLDYDE-EIG-----------------MALKKVEPNARRI  168 (227)
Q Consensus       125 la~~~~~------------------~g~~~~A~~~~~~a~~~~p~~-~~~-----------------~~l~~~~~~~~~~  168 (227)
                      +|.++..                  .|++++|+..|++++..+|++ .++                 ..++.++...|++
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~  163 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW  163 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            9999987                  578999999999999999997 332                 3566777888999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 041967          169 QEHRRKYERLRKEREL  184 (227)
Q Consensus       169 ~~a~~~~~~~~~~~~~  184 (227)
                      .+|...++++.+..+.
T Consensus       164 ~~A~~~~~~~l~~~p~  179 (225)
T 2yhc_A          164 VAVVNRVEGMLRDYPD  179 (225)
T ss_dssp             HHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHCcC
Confidence            9999999888877554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.65  E-value=4.2e-15  Score=129.05  Aligned_cols=135  Identities=13%  Similarity=0.099  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHHhCCCCH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL---------NKPNAAIRDAYVALETNPDSA  119 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~  119 (227)
                      ..+.+++.+|.+++..|++++|+.+|++++.++|+ +.++.++|.++...         |++++|+..|++++.++|++.
T Consensus       135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  213 (474)
T 4abn_A          135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG  213 (474)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH
Confidence            45789999999999999999999999999999999 79999999999999         999999999999999999999


Q ss_pred             HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCC---Ch-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          120 KGYKIRGMARARL--------GQWEEAANDLHVASKLDY---DE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       120 ~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~p---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .+|+.+|.+|..+        |++++|+.+|++++.++|   .+ ..+..++.++...|++.+|...++++.+..+.
T Consensus       214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  290 (474)
T 4abn_A          214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA  290 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999        999999999999999999   77 77889999999999999999999998877664

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.65  E-value=1.3e-14  Score=114.09  Aligned_cols=134  Identities=22%  Similarity=0.179  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++.+|..++..|++++|+.+|.+++..+|.++.+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence            47888999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHh--cCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASK--LDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~--~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ...|++++|+..|.+++.  ..|.+ .++..++.++...|++.+|...+++..+..+
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  172 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR  172 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence            999999999999999988  77777 6677888888888999999888887776544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.65  E-value=4.6e-15  Score=124.32  Aligned_cols=134  Identities=21%  Similarity=0.083  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++.+|..++..|++++|+..|++++..+|++..++.++|.++...|++++|+..|++++..+|++..++..+|.++
T Consensus        66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  145 (388)
T 1w3b_A           66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL  145 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45678888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ..+|++++|+..|.+++..+|++ ..+..++.++...|++.+|...++++.+..+
T Consensus       146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  200 (388)
T 1w3b_A          146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP  200 (388)
T ss_dssp             HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            88888888888888888888877 6677778888888888888888777765544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.65  E-value=1.7e-14  Score=110.90  Aligned_cols=134  Identities=16%  Similarity=0.091  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHH--hCCCCHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL-NKPNAAIRDAYVALE--TNPDSAKGYKIRG  126 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~la  126 (227)
                      ....+..+|..++..|++++|+.+|.+++..+|.++.++..+|.++... |++++|+..+++++.  .+|.+..+++.+|
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  120 (225)
T 2vq2_A           41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKG  120 (225)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999 999999999999999  6677789999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      .++...|++++|+..|.+++...|.+ ..+..++.++...|++.+|...+++..+..+
T Consensus       121 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          121 ICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999998 7788999999999999999999988887765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=5.7e-15  Score=115.94  Aligned_cols=130  Identities=16%  Similarity=0.164  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHHH-----------
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-------AILYAARAGVYVKLNKPNAAIRDAYVALE-----------  113 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~g~~~~~~~~~~~A~~~~~~al~-----------  113 (227)
                      ..++.+|..++..|++++|+.+|.+++..+|.+       +.+++.+|.++...|++++|+..|++++.           
T Consensus        39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  118 (258)
T 3uq3_A           39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKL  118 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHH
Confidence            445555555555555555555555555554443       44555555555555555555555555555           


Q ss_pred             ---------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHH
Q 041967          114 ---------------TNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYER  177 (227)
Q Consensus       114 ---------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~  177 (227)
                                     .+|.++.+++.+|.++...|++++|+..|++++..+|.+ .++..++.++...|++.+|...+++
T Consensus       119 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                           333444455555555555555555555555555555554 4444555555555555555555555


Q ss_pred             HHHH
Q 041967          178 LRKE  181 (227)
Q Consensus       178 ~~~~  181 (227)
                      ..+.
T Consensus       199 al~~  202 (258)
T 3uq3_A          199 AIEK  202 (258)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5444

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.64  E-value=1.3e-14  Score=121.64  Aligned_cols=134  Identities=16%  Similarity=0.055  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..+..+|..+...|++++|+..|++++..+|+++.++.++|.++...|++++|+..|++++.++|+++.+++.+|.++
T Consensus       168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  247 (388)
T 1w3b_A          168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY  247 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHH
Confidence            35677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ...|++++|+..|++++.++|.+ .++..++.++...|++.+|...++++.+..+
T Consensus       248 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  302 (388)
T 1w3b_A          248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP  302 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            88888888888888888888887 6677888888888888888888877766544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.64  E-value=3.8e-15  Score=123.74  Aligned_cols=130  Identities=16%  Similarity=0.038  Sum_probs=117.8

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 041967           55 KLKAVDLISEGKLEDAIGQLTEAIMLNPT--SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL  132 (227)
Q Consensus        55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  132 (227)
                      ...|..+...|++++|+.+|.+++..+|.  ++.+++++|.++...|++++|+..|++++.++|.++.+|+.+|.++...
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  260 (365)
T 4eqf_A          181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG  260 (365)
T ss_dssp             --------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34588999999999999999999999999  8999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          133 GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       133 g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      |++++|+..|++++.++|++ .++..++.++...|++.+|...++++.+..+.
T Consensus       261 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  313 (365)
T 4eqf_A          261 DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK  313 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            99999999999999999998 77889999999999999999999999877764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.64  E-value=1.9e-15  Score=109.82  Aligned_cols=113  Identities=14%  Similarity=0.055  Sum_probs=104.6

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967           72 GQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD  151 (227)
Q Consensus        72 ~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  151 (227)
                      ..|.+++..+|.+...++.+|.+++..|++++|+..|++++..+|.++.+|+.+|.++..+|++++|+.+|.+++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          152 E-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       152 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      + ..+..++.++...|++.+|...+++.....+.
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  118 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAA  118 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9 78889999999999999999999998877663

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.64  E-value=1.2e-15  Score=114.52  Aligned_cols=104  Identities=14%  Similarity=0.110  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCc--HHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGV-YVKLNKP--NAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      ..+..++.+|..++..|++++|+.+|.+++..+|.++.+++.+|.+ ++..|++  ++|+..|++++..+|.++.+++.+
T Consensus        42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  121 (177)
T 2e2e_A           42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLL  121 (177)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            3567899999999999999999999999999999999999999999 7889998  999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          126 GMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       126 a~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      |.++...|++++|+..|.+++.++|.+
T Consensus       122 a~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A          122 ASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999987

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.63  E-value=2.9e-15  Score=119.15  Aligned_cols=133  Identities=10%  Similarity=0.058  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      ...++.+|..++..|+|++|+..|.+++. .|.+    +.++..+|.++...|++++|+..|++++..+|.++.++..+|
T Consensus        37 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  115 (272)
T 3u4t_A           37 PYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIG  115 (272)
T ss_dssp             STTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            44677788888888888888888888887 3332    445778888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .++...|++++|+.+|++++.++|.+ .++..++......+++.+|...++++.+..+.
T Consensus       116 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  174 (272)
T 3u4t_A          116 SYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN  174 (272)
T ss_dssp             HHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            88888888888888888888888877 66667773444455788888888777766554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.63  E-value=3.7e-14  Score=111.53  Aligned_cols=135  Identities=13%  Similarity=0.166  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH--hCCCCHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE--TNPDSAKGYKIRG  126 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la  126 (227)
                      .....++.+|..++..|++++|+..|.+++..+|.+..++..+|.++...|++++|+..+++++.  ..|.+..+++.+|
T Consensus        69 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la  148 (252)
T 2ho1_A           69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLG  148 (252)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999  8899999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      .++...|++++|+..|.+++...|.+ ..+..++.++...|++.+|...+++..+..+
T Consensus       149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  206 (252)
T 2ho1_A          149 LVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG  206 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999998 7788999999999999999999988775443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.63  E-value=1.6e-14  Score=119.91  Aligned_cols=131  Identities=17%  Similarity=0.151  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-------------
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD-------------  117 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------------  117 (227)
                      +..++.+|..++..|++++|+..|.+++..+|+++.++.++|.++...|++++|+..|++++.++|.             
T Consensus        99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  178 (365)
T 4eqf_A           99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG  178 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchH
Confidence            3445555555555555555555555555555555555555555555555555555544444443322             


Q ss_pred             ---------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 041967          118 ---------------------------------SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEP  163 (227)
Q Consensus       118 ---------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~  163 (227)
                                                       ++.+++.+|.++...|++++|+..|++++.+.|.+ .++..++.++.
T Consensus       179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  258 (365)
T 4eqf_A          179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA  258 (365)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                                             44455555555555555555555555555555554 44445555555


Q ss_pred             hhhhHHHHHHHHHHHHHH
Q 041967          164 NARRIQEHRRKYERLRKE  181 (227)
Q Consensus       164 ~~~~~~~a~~~~~~~~~~  181 (227)
                      ..|++.+|...++++.+.
T Consensus       259 ~~g~~~~A~~~~~~al~~  276 (365)
T 4eqf_A          259 NGDRSEEAVEAYTRALEI  276 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhc
Confidence            555555555555554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.63  E-value=1.7e-15  Score=137.11  Aligned_cols=133  Identities=11%  Similarity=0.035  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++.+|..++..|+|++|+..|+++++.+|+++.+|+++|.+++..|++++|+..|+++++++|++..+|+++|.++
T Consensus       432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~  511 (681)
T 2pzi_A          432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATA  511 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ..+|++++ +.+|+++++++|++ .++..++.++...|++++|...|+++.+..+
T Consensus       512 ~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  565 (681)
T 2pzi_A          512 ELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSR  565 (681)
T ss_dssp             HHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTST
T ss_pred             HHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCc
Confidence            99999999 99999999999999 7788999999999999999999988765544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.62  E-value=3.2e-15  Score=102.54  Aligned_cols=102  Identities=16%  Similarity=0.142  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD--SAKGYKIRGMA  128 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~  128 (227)
                      +..++.+|..++..|++++|+.+|.+++..+|.+..+++++|.++...|++++|+..|++++..+|.  +..+++.+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999999999999999  99999999999


Q ss_pred             HHHc-CCHHHHHHHHHHHHhcCCCh
Q 041967          129 RARL-GQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       129 ~~~~-g~~~~A~~~~~~a~~~~p~~  152 (227)
                      +..+ |++++|+.++.+++...|.+
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhcccCC
Confidence            9999 99999999999999999875

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.62  E-value=2.5e-14  Score=116.22  Aligned_cols=133  Identities=11%  Similarity=-0.004  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEG-KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      .+..++.+|..++..| ++++|+.+|.+++..+|.++.++..+|.++...|++++|+..|++++...|.+..+++.+|.+
T Consensus        89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  168 (330)
T 3hym_B           89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE  168 (330)
T ss_dssp             STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            4567888888888888 888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      +...|++++|+..|++++..+|.+ .++..++.++...|++.+|...++++.+..
T Consensus       169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  223 (330)
T 3hym_B          169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI  223 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence            888888888888888888888888 667788888888888888888887777654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.62  E-value=1.9e-15  Score=111.62  Aligned_cols=92  Identities=18%  Similarity=0.114  Sum_probs=85.8

Q ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 041967           63 SEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKP----------NAAIRDAYVALETNPDSAKGYKIRGMARARL  132 (227)
Q Consensus        63 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  132 (227)
                      +.+.|++|+..|.+++.++|+++.+|+++|.++...+++          ++|+..|+++|+++|++..+|+++|.+|..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            346799999999999999999999999999999999876          4999999999999999999999999999988


Q ss_pred             C-----------CHHHHHHHHHHHHhcCCChHH
Q 041967          133 G-----------QWEEAANDLHVASKLDYDEEI  154 (227)
Q Consensus       133 g-----------~~~~A~~~~~~a~~~~p~~~~  154 (227)
                      |           ++++|+.+|++|+.++|++..
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence            5           899999999999999999843

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.62  E-value=6.9e-16  Score=134.19  Aligned_cols=128  Identities=26%  Similarity=0.331  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ..+..++.+|..++..|+|++|+.+|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.+++++|.+
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   83 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   83 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            35677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH--HHhhhhHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKV--EPNARRIQEHRRKYE  176 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~--~~~~~~~~~a~~~~~  176 (227)
                      |..+|++++|+..|+++++++|++ ..+..++.+  ....|++++|...++
T Consensus        84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999998 677777777  667788888888776

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.62  E-value=3.4e-14  Score=106.48  Aligned_cols=124  Identities=16%  Similarity=0.120  Sum_probs=112.8

Q ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HH
Q 041967           61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA-RARLGQW--EE  137 (227)
Q Consensus        61 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~  137 (227)
                      ++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++.++|.++.+++.+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999 8899999  99


Q ss_pred             HHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          138 AANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       138 A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      |+..|.+++.++|.+ .++..++.++...|++.+|...++++.+..+.
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence            999999999999998 77889999999999999999999998876554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.62  E-value=4.4e-14  Score=120.15  Aligned_cols=137  Identities=20%  Similarity=0.208  Sum_probs=124.2

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      .+..+..++.+|..++..|+|++|+..|.+++..+|.++.+++.+|.+++..|++++|+..|++++..+|++..+++.+|
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  101 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG  101 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCChH----HHHHH------------HHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDEE----IGMAL------------KKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      .++..+|++++|+..|++++.++|.+.    .+..+            +.++...|++.+|...++++.+..+
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  174 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV  174 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999874    23333            5557889999999999988776544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.61  E-value=1.4e-14  Score=119.82  Aligned_cols=128  Identities=16%  Similarity=0.067  Sum_probs=99.6

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 041967           56 LKAVDLISEGKLEDAIGQLTEAIMLNPT--SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG  133 (227)
Q Consensus        56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  133 (227)
                      ..|..+ ..|++++|+..|.+++..+|.  ++.++.++|.++...|++++|+..|++++.++|.++.+++.+|.++...|
T Consensus       187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  265 (368)
T 1fch_A          187 ILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN  265 (368)
T ss_dssp             TTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence            444444 677788888888888888887  67778888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          134 QWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       134 ~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ++++|+..|++++.++|.+ .++..++.++...|++.+|...+++.....+.
T Consensus       266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  317 (368)
T 1fch_A          266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK  317 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            8888888888888888877 66677788888888888888888777766554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.61  E-value=5.9e-15  Score=119.58  Aligned_cols=103  Identities=28%  Similarity=0.360  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++.+|..++..|+|++|+..|.+++..+|+++.+++++|.++...|++++|+.+|++++.++|++..+++.+|.++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ..+|++++|+..|.+++.++|++
T Consensus        83 ~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999864

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.61  E-value=2.7e-14  Score=115.85  Aligned_cols=129  Identities=18%  Similarity=0.169  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      ...+..+|..+...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+..|++++..+|.+..+++.+|.++.
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  251 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS  251 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            56677778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhcCCC------------h-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          131 RLGQWEEAANDLHVASKLDYD------------E-EIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a~~~~p~------------~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      ..|++++|+..|++++.+.|.            + .++..++.++...|++.+|...+++..
T Consensus       252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            888888888888888888877            5 556677777777787777777765443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.61  E-value=1.1e-15  Score=107.46  Aligned_cols=91  Identities=18%  Similarity=0.104  Sum_probs=83.6

Q ss_pred             HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 041967           63 SEGKLEDAIGQLTEAIML---NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAA  139 (227)
Q Consensus        63 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  139 (227)
                      ..|++++|+..|++++..   +|+++.+++++|.+++..|++++|+..|++++.++|+++.+++.+|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   58889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCChH
Q 041967          140 NDLHVASKLDYDEE  153 (227)
Q Consensus       140 ~~~~~a~~~~p~~~  153 (227)
                      ..|++++...|++.
T Consensus        82 ~~~~~al~~~p~~~   95 (117)
T 3k9i_A           82 ELLLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHHHCCCH
T ss_pred             HHHHHHHHhCCCcH
Confidence            99999999999983

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.60  E-value=3.3e-14  Score=111.15  Aligned_cols=131  Identities=13%  Similarity=0.046  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------cCCcHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI---LYAARAGVYVK------------------LNKPNAAIRDAY  109 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~g~~~~~------------------~~~~~~A~~~~~  109 (227)
                      ..+++.+|.+++..|+|++|+..|++++..+|+++.   +++.+|.++..                  .|++++|+..|+
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  120 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS  120 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence            578999999999999999999999999999999864   89999999986                  578999999999


Q ss_pred             HHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHhhhhH
Q 041967          110 VALETNPDSAKGY-----------------KIRGMARARLGQWEEAANDLHVASKLDYDEE----IGMALKKVEPNARRI  168 (227)
Q Consensus       110 ~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~l~~~~~~~~~~  168 (227)
                      +++..+|+++.++                 +.+|.+|...|++.+|+..|++++...|++.    ++..++.++...|++
T Consensus       121 ~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~  200 (225)
T 2yhc_A          121 KLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN  200 (225)
T ss_dssp             HHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence            9999999987554                 6789999999999999999999999999863    466899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 041967          169 QEHRRKYERLRKE  181 (227)
Q Consensus       169 ~~a~~~~~~~~~~  181 (227)
                      .+|...++.+...
T Consensus       201 ~~A~~~~~~l~~~  213 (225)
T 2yhc_A          201 AQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999988776543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.59  E-value=2.1e-14  Score=107.93  Aligned_cols=131  Identities=16%  Similarity=0.099  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYV-KLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      ++.+..++.+|.+++..|++++|+..|++++..+| ++.++..++.+.+ ..+....|+..+++++..+|+++.+++.+|
T Consensus        37 P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la  115 (176)
T 2r5s_A           37 QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELA  115 (176)
T ss_dssp             HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34456666666666666666666666666666666 5555444443322 222333456666666677777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      .++...|++++|+..|+++++.+|+.   .++..++.++...|+..++...|++..
T Consensus       116 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          116 VQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            77777777777777777777776653   355666666666676666666665443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.59  E-value=1.9e-13  Score=113.10  Aligned_cols=134  Identities=14%  Similarity=0.077  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHH--------------------
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-SAILYAARAGVYVKLNKPNAAIRDA--------------------  108 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A~~~~--------------------  108 (227)
                      .+..++.+|.+++..|++++|+..|.+++..+|. . .++..+|.++...|++++|+..+                    
T Consensus        97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  175 (368)
T 1fch_A           97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ-TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG  175 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            4566677777777777777777777777766653 3 23455556665555555555555                    


Q ss_pred             -----------------------------HHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHH
Q 041967          109 -----------------------------YVALETNPD--SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGM  156 (227)
Q Consensus       109 -----------------------------~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~  156 (227)
                                                   ++++..+|.  .+.+++.+|.++...|++++|+..|++++.++|.+ .++.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  255 (368)
T 1fch_A          176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN  255 (368)
T ss_dssp             ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH
Confidence                                         455555666  78899999999999999999999999999999998 7788


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          157 ALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       157 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .++.++...|++.+|...++++.+..+.
T Consensus       256 ~l~~~~~~~g~~~~A~~~~~~al~~~~~  283 (368)
T 1fch_A          256 KLGATLANGNQSEEAVAAYRRALELQPG  283 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999988776553

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.59  E-value=2.6e-14  Score=113.57  Aligned_cols=132  Identities=14%  Similarity=0.036  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      +..+..+|..+...|++++|+.+|.+++..+|.++.++..+|.++...|++++|+..|++++.++|.++.+++.+|....
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  153 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY  153 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999995555


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhh---HHHHHHHHHHHHHHH
Q 041967          131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARR---IQEHRRKYERLRKER  182 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~  182 (227)
                      ..+++++|+..|++++.++|++ ..+..++.+....++   +.+|...+++..+..
T Consensus       154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  209 (272)
T 3u4t_A          154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC  209 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence            6679999999999999999998 777788888888887   777888887776654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.59  E-value=5.1e-14  Score=108.20  Aligned_cols=102  Identities=18%  Similarity=0.179  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-----------
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-----------  119 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------  119 (227)
                      +..++.+|.+++..|+|++|+..|.+++..+|.++.+++++|.++...|++++|+..|++++.+.|.+.           
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  116 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF  116 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcccc
Confidence            578999999999999999999999999999999999999999999999999999999999999888876           


Q ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          120 -----KGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       120 -----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                           .+++.+|.++..+|++++|+..|++++.++|++
T Consensus       117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             CccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence                 999999999999999999999999999999986

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.58  E-value=7.2e-14  Score=113.51  Aligned_cols=131  Identities=12%  Similarity=0.024  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-KPNAAIRDAYVALETNPDSAKGYKIRGMARAR  131 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  131 (227)
                      .+...+..++..|++++|+..+.+++..+|.++.+++.+|.++...| ++++|+..|++++..+|.++.+|+.+|.++..
T Consensus        58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  137 (330)
T 3hym_B           58 CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV  137 (330)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            34445555566666666666666666666666666666666666666 56666666666666666666666666666666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          132 LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       132 ~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      .|++++|+..|.+++.+.|.+ ..+..++.++...|++.+|...++++.+..+
T Consensus       138 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  190 (330)
T 3hym_B          138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP  190 (330)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence            666666666666666666655 5555566666666666666666655554433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=7.3e-14  Score=98.88  Aligned_cols=101  Identities=17%  Similarity=0.152  Sum_probs=95.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHH
Q 041967           82 PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKK  160 (227)
Q Consensus        82 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~  160 (227)
                      |..+..++.+|.+++..|++++|+..|++++.++|.++.+|+++|.++..+|++++|+.+|.+++.++|++ ..+..++.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999998 77889999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHH
Q 041967          161 VEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       161 ~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      ++...|++.+|...+++..+..
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhC
Confidence            9999999999999999988777

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.58  E-value=2.4e-14  Score=116.28  Aligned_cols=136  Identities=13%  Similarity=0.036  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      .....++..|..++..|++++|+..|++++..+|+++.+++++|.++...|++++|+..+++++..+|+....+...+..
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  194 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE  194 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999777777777777


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      +...+....|+..|++++..+|++ ..+..++.++...|++.+|...+.++.+..+.
T Consensus       195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~  251 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT  251 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence            888888888899999999999988 77778888888999999999999888877654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.57  E-value=8.7e-14  Score=120.75  Aligned_cols=129  Identities=19%  Similarity=0.155  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      +..+..+|..++..|++++|+..|.+++..+|+ +.+++.+|.++...|++++|+..|++++..+|.++.+++.+|.++.
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF  321 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            344555555555555555555555555555554 4445555555555555555555555555555555555555555555


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                      ..|++++|+..|.+++.++|.+ ..+..++.++...|++.+|...++++.+
T Consensus       322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  372 (537)
T 3fp2_A          322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL  372 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5555555555555555555444 4444444444444554444444444443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.57  E-value=2.6e-13  Score=116.91  Aligned_cols=103  Identities=26%  Similarity=0.264  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      ...+..++..|..++..|+|++|+..|++++..+| ++.+++.+|.++...|++++|+..|++++.++|++..+++.+|.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~   81 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            35689999999999999999999999999999999 69999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC
Q 041967          128 ARARLGQWEEAANDLHVASKLDYD  151 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~  151 (227)
                      ++..+|++++|+..|.+++..+|.
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~  105 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDF  105 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999874

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.57  E-value=8.7e-15  Score=132.40  Aligned_cols=117  Identities=15%  Similarity=-0.002  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      +.+.+++.+|.+++..|+|++|+..|++++.++|+++.+++++|.++...|++++ +..|+++++++|++..+|+++|.+
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~  543 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA  543 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence            3467899999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNAR  166 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~  166 (227)
                      +..+|++++|+.+|+++++++|++ .++..++.++...+
T Consensus       544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR  582 (681)
T ss_dssp             HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred             HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence            999999999999999999999998 77778888875533

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.56  E-value=4.6e-15  Score=111.59  Aligned_cols=132  Identities=10%  Similarity=-0.028  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      .+.++..|..++..|++++|+..|++++..+|+++.+++++|.++...|++++|+..|++++..+| ++..+..++.+..
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~   84 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL   84 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence            456889999999999999999999999999999999999999999999999999999999999999 8877766665533


Q ss_pred             -HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          131 -RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       131 -~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                       ..+....|+..|++++.++|++ ..+..++.++...|++.+|...+++..+..+
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  139 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNL  139 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence             3334445899999999999998 7888999999999999999999998887664

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.56  E-value=2.4e-13  Score=110.70  Aligned_cols=135  Identities=16%  Similarity=0.075  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGV--YVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      ....+..+|.++...|++++|+..|++++..+|++.......+.+  +...|++++|+..|++++..+|+++.+|+.+|.
T Consensus       129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~  208 (291)
T 3mkr_A          129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA  208 (291)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            456788888888888999999999988888888876544433332  233478888999999998888988888999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHh
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEH-RRKYERLRKEREL  184 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~  184 (227)
                      ++..+|++++|...|++++.++|++ .++.+++.+....|+..++ ...++++.+..+.
T Consensus       209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999988 7777888888888887664 4555666666554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.56  E-value=1.4e-13  Score=112.77  Aligned_cols=132  Identities=20%  Similarity=0.082  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCcHHHHHHHHHHHHhCC
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNP---TSAILYAAR------------AGVYVKLNKPNAAIRDAYVALETNP  116 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~------------g~~~~~~~~~~~A~~~~~~al~~~p  116 (227)
                      ..+..+|..++..|++++|+..|.+++..+|   .+..++..+            |.++...|++++|+..+++++..+|
T Consensus        72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  151 (359)
T 3ieg_A           72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV  151 (359)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            4455555555555555555555555555555   444444444            4555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       117 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      .++.+++.+|.++...|++++|+..|.+++...|.+ ..+..++.++...|++.++...+++..+..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  219 (359)
T 3ieg_A          152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ  219 (359)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            666666666666666666666666666666666666 5555666666666666666666666655443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.55  E-value=9.2e-14  Score=110.16  Aligned_cols=136  Identities=22%  Similarity=0.199  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLN--------PTSAILYAARAGVYVKLNKPNAAIRDAYVALET-----  114 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----  114 (227)
                      +..+..+..+|..++..|++++|+.+|.+++...        |..+.++.++|.++...|++++|+..|++++.+     
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  119 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  119 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence            4568899999999999999999999999999873        556789999999999999999999999999998     


Q ss_pred             ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          115 ---NPDSAKGYKIRGMARARLGQWEEAANDLHVASKL--------DYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       115 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                         +|....+++.+|.++...|++++|+.+|++++.+        .|.. .++..++.++...|++.+|...+++..+..
T Consensus       120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA  199 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence               4667789999999999999999999999999999        5555 567799999999999999999998887654


Q ss_pred             H
Q 041967          183 E  183 (227)
Q Consensus       183 ~  183 (227)
                      +
T Consensus       200 ~  200 (283)
T 3edt_B          200 H  200 (283)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.55  E-value=5.1e-14  Score=114.42  Aligned_cols=134  Identities=17%  Similarity=0.013  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhCCCC----
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKL-NKPNAAIRDAYVALETNPDS----  118 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~----  118 (227)
                      .+..+..+|.++...|++++|+.+|++++.+.|..      +.++.++|.+|... |++++|+.+|++++.+.|..    
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~  155 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA  155 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence            46789999999999999999999999999987653      56899999999996 99999999999999998754    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-H-------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          119 --AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-E-------IGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       119 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                        ..++.++|.++..+|++++|+.+|++++.+.|.+ .       .+..++.++...|++.+|...+++.....+
T Consensus       156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  230 (292)
T 1qqe_A          156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP  230 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence              4678899999999999999999999999999875 2       346788889999999999999988765444

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.55  E-value=1.4e-13  Score=111.69  Aligned_cols=134  Identities=10%  Similarity=-0.005  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ....++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+..+++.+|.++
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   99 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   99 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHH--------------HH-HHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMAL--------------KK-VEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ...|++++|+..|.+++..+|.+ ..+..+              +. +....|++.++...++++.+..+
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  169 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP  169 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence            99999999999999999999987 444444              44 46778888889888887766544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.54  E-value=5.8e-14  Score=111.42  Aligned_cols=123  Identities=15%  Similarity=0.099  Sum_probs=114.0

Q ss_pred             HHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 041967           62 ISEGKLEDAIGQLTEAIMLN----PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEE  137 (227)
Q Consensus        62 ~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  137 (227)
                      ...|+|++|+..|.+++...    |.++.+++.+|.++...|++++|+..|++++.++|.++.+++.+|.++...|++++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence            34578999999999999974    45678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          138 AANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       138 A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      |+..|++++.++|.+ .++..++.++...|++.+|...++++.+..+.
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  143 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  143 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            999999999999998 88889999999999999999999998876554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.54  E-value=3.6e-13  Score=114.43  Aligned_cols=132  Identities=21%  Similarity=0.223  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL  132 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  132 (227)
                      .++..|..++..|++++|+..|.+++..+|.++.++..+|.+|...|++++|+..|++++..+|.++.+++.+|.++...
T Consensus       145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  224 (450)
T 2y4t_A          145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL  224 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            35667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCh-HHHHHH------------HHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          133 GQWEEAANDLHVASKLDYDE-EIGMAL------------KKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       133 g~~~~A~~~~~~a~~~~p~~-~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      |++++|+..|++++.++|++ ..+..+            +.++...|++.+|...++++....+.
T Consensus       225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~  289 (450)
T 2y4t_A          225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS  289 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred             CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            99999999999999999998 555444            78888999999999999888766543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.7e-13  Score=117.99  Aligned_cols=129  Identities=12%  Similarity=0.041  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR  131 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  131 (227)
                      ..+..+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++..
T Consensus       305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  384 (514)
T 2gw1_A          305 SVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD  384 (514)
T ss_dssp             HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHHHHhcCCCh-H------HHHHHHHHHHh---hhhHHHHHHHHHHHHH
Q 041967          132 LGQWEEAANDLHVASKLDYDE-E------IGMALKKVEPN---ARRIQEHRRKYERLRK  180 (227)
Q Consensus       132 ~g~~~~A~~~~~~a~~~~p~~-~------~~~~l~~~~~~---~~~~~~a~~~~~~~~~  180 (227)
                      .|++++|+..|.+++.+.|.+ .      ++..++.++..   .|++.+|...++++..
T Consensus       385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~  443 (514)
T 2gw1_A          385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK  443 (514)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence            555555555555555554443 2      44444555554   5555555555544443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.53  E-value=3.5e-13  Score=116.93  Aligned_cols=134  Identities=16%  Similarity=0.175  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      ...++.+|..++..|++++|+.+|.+++..+|.++.++..+|.++...|++++|+..|++++..+|.+..+++.+|.++.
T Consensus       276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  355 (537)
T 3fp2_A          276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY  355 (537)
T ss_dssp             HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          131 RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ..|++++|+..|.+++..+|.+ .++..++.++...|++.+|...++++.+..+.
T Consensus       356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence            9999999999999999999998 78889999999999999999999998877664

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.6e-14  Score=99.48  Aligned_cols=95  Identities=17%  Similarity=0.194  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC------HHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS------AKGYK  123 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~  123 (227)
                      .+..++.+|..++..|+|++|+..|++++..+|.++.+++++|.++...|++++|+..|++++.++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999999999999999999999999999      89999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHH
Q 041967          124 IRGMARARLGQWEEAANDLHV  144 (227)
Q Consensus       124 ~la~~~~~~g~~~~A~~~~~~  144 (227)
                      .+|.++..+|++..|+..+.+
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999988777665543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.53  E-value=5.3e-13  Score=95.29  Aligned_cols=106  Identities=19%  Similarity=0.077  Sum_probs=98.6

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 041967           79 MLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMA  157 (227)
Q Consensus        79 ~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~  157 (227)
                      ..+|.++..++.+|.+++..|++++|+..|++++.++|.++.+++.+|.++..+|+++.|+..|++++.++|++ .++..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999998 78889


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          158 LKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       158 l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ++.++...|++.+|...++++....+.
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            999999999999999999988877664

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.52  E-value=6.3e-13  Score=117.03  Aligned_cols=134  Identities=13%  Similarity=-0.056  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ....+..+|..+...|++++|+..|++++...|.+..++..+|.++...|++++|+..|++++..+|.++.+|..+|.++
T Consensus       406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  485 (597)
T 2xpi_A          406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA  485 (597)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            46788899999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhc------CCCh--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKL------DYDE--EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~------~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ...|++++|+..|++++.+      +|++  .++..++.++...|++++|...++++.+..+
T Consensus       486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  547 (597)
T 2xpi_A          486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST  547 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            9999999999999999888      6663  5677889999999999999999988876654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.52  E-value=7.7e-13  Score=116.44  Aligned_cols=133  Identities=15%  Similarity=0.068  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ....+..+|..+...|++++|+..|.+++..+|.+..+|..+|.+|...|++++|+..|++++...|.+..+|+.+|.++
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  451 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQH  451 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            46678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      ...|++++|+..|.+++..+|.+ .++..++.++...|++++|...++++.+..
T Consensus       452 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  505 (597)
T 2xpi_A          452 MQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV  505 (597)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999988 678899999999999999999998887653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.51  E-value=2.5e-13  Score=96.98  Aligned_cols=100  Identities=12%  Similarity=0.011  Sum_probs=88.7

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-H-------HH
Q 041967           84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-E-------IG  155 (227)
Q Consensus        84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~-------~~  155 (227)
                      .+.++.++|.++++.|+|++|+..|++++.++|+++.+|+++|.+|..+|++++|+.+|.+++.++|.+ .       ++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999999998864 1       34


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          156 MALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       156 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ..++.++...|++.+|...|++.....+
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            5778888888999999998887765443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.51  E-value=3.7e-13  Score=95.27  Aligned_cols=98  Identities=14%  Similarity=0.071  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967           87 LYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA  165 (227)
Q Consensus        87 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~  165 (227)
                      .++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|++ .++..++.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            478899999999999999999999999999999999999999999999999999999999999998 7788999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHh
Q 041967          166 RRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       166 ~~~~~a~~~~~~~~~~~~~  184 (227)
                      |++.+|...+++..+..+.
T Consensus        99 g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHHHHHhCcC
Confidence            9999999999888765543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.51  E-value=3.3e-13  Score=100.01  Aligned_cols=104  Identities=17%  Similarity=0.086  Sum_probs=98.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 041967           81 NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALK  159 (227)
Q Consensus        81 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~  159 (227)
                      ++..+..++.+|.+++..|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+.+|++++.++|++ .++..++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            344678999999999999999999999999999999999999999999999999999999999999999998 7888999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          160 KVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       160 ~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .++...|++.+|...+++.....+.
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~  111 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGN  111 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999877764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.51  E-value=1.5e-13  Score=121.39  Aligned_cols=121  Identities=17%  Similarity=0.121  Sum_probs=97.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967           64 EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLH  143 (227)
Q Consensus        64 ~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  143 (227)
                      .|++++|+..|++++..+|+++.+++++|.++...|++++|+..|++++.++|++..+++.+|.++..+|++++|+.+|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          144 VASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       144 ~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ++++++|++ ..+..++.++...|++.+|...+++..+..+.
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  123 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE  123 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999999998 77889999999999999999999998877554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.50  E-value=8.4e-13  Score=92.75  Aligned_cols=102  Identities=26%  Similarity=0.275  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ....++..|..++..|++++|+..|.+++...|.++.+++.+|.++...|++++|+..+++++...|.+..+++.+|.++
T Consensus        34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  113 (136)
T 2fo7_A           34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY  113 (136)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC
Q 041967          130 ARLGQWEEAANDLHVASKLDYD  151 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~  151 (227)
                      ...|++++|...|.+++..+|.
T Consensus       114 ~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          114 YKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHccHHHHHHHHHHHHccCCC
Confidence            9999999999999999999886

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.50  E-value=3.8e-13  Score=93.75  Aligned_cols=85  Identities=14%  Similarity=0.152  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 041967           68 EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASK  147 (227)
Q Consensus        68 ~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  147 (227)
                      +.|+..|.+++..+|+++.+++++|.+++..|++++|+..|++++.++|.+..+|+.+|.++..+|++++|+..|++++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCh
Q 041967          148 LDYDE  152 (227)
Q Consensus       148 ~~p~~  152 (227)
                      +.|.+
T Consensus        82 ~~~~~   86 (115)
T 2kat_A           82 AAQSR   86 (115)
T ss_dssp             HHHHH
T ss_pred             hcccc
Confidence            98754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.50  E-value=2.2e-13  Score=110.51  Aligned_cols=132  Identities=15%  Similarity=0.082  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      +.+.+++.+|.++...|++++|+..|++++..+|+........+..+...++...|+..+++++..+|+++.+++.+|.+
T Consensus       149 ~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~  228 (287)
T 3qou_A          149 QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQ  228 (287)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHH
Confidence            45678999999999999999999999999999998777788888888899999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE---EIGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                      +...|++++|+..|.++++.+|++   .++..++.++...|+..++...|++...
T Consensus       229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            999999999999999999999985   4577999999999999999998876653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.50  E-value=4.8e-13  Score=109.30  Aligned_cols=133  Identities=12%  Similarity=-0.047  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI-LYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      .....|...|..+...|++++|+..|++++...|.++. +|.++|.++...|++++|+..|++++..+|....+|...+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  176 (308)
T 2ond_A           97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL  176 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            35678999999999999999999999999999999887 99999999999999999999999999999999888887776


Q ss_pred             HHHH-cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          128 ARAR-LGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       128 ~~~~-~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      +... .|+++.|...|++++..+|++ ..+..++......|++.+++..|+++...
T Consensus       177 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            6543 799999999999999999998 78889999999999999999999888873

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.49  E-value=3.2e-13  Score=107.02  Aligned_cols=133  Identities=15%  Similarity=0.048  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIML--------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALET-----  114 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----  114 (227)
                      +..+..+..+|.++...|++++|+.+|.+++..        +|....++.++|.++...|++++|+..|++++.+     
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  161 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL  161 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            456788999999999999999999999999988        4666789999999999999999999999999998     


Q ss_pred             ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------------------------------
Q 041967          115 ---NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD------------------------------------------  149 (227)
Q Consensus       115 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------------------------------------------  149 (227)
                         .|....++..+|.++..+|++++|+..|.+++.+.                                          
T Consensus       162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (283)
T 3edt_B          162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWY  241 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----------
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence               77778899999999999999999999999999862                                          


Q ss_pred             -------CCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          150 -------YDE-EIGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       150 -------p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                             |.. .++..++.++...|++.+|...+++..+
T Consensus       242 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          242 KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                   222 3456888888899999999888877653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.48  E-value=1.5e-12  Score=106.35  Aligned_cols=137  Identities=14%  Similarity=-0.028  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHH-------CCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLIS-------EGKL-------EDAIGQLTEAIM-LNPTSAILYAARAGVYVKLNKPNAAIRDAYVAL  112 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  112 (227)
                      +..+..|+..|..+..       .|++       ++|+..|++|+. ++|++..+|..+|.++...|++++|+..|++++
T Consensus        47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  126 (308)
T 2ond_A           47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL  126 (308)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            3567889999988874       5885       999999999999 799999999999999999999999999999999


Q ss_pred             HhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHh
Q 041967          113 ETNPDSAK-GYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEP-NARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       113 ~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .++|.++. +|..+|.++...|++++|...|.+++..+|.+ .++...+.+.. ..|++.+|...|++..+..+.
T Consensus       127 ~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~  201 (308)
T 2ond_A          127 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD  201 (308)
T ss_dssp             TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred             hccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999987 99999999999999999999999999999987 66554444433 368999999999988877664

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.47  E-value=1.1e-12  Score=86.78  Aligned_cols=85  Identities=24%  Similarity=0.288  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ..+..++.+|..++..|+|++|+..|.+++..+|.++.+++++|.++...|++++|+..|++++.++|.++.++..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcC
Q 041967          129 RARLG  133 (227)
Q Consensus       129 ~~~~g  133 (227)
                      +..+|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            87765

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.47  E-value=5.2e-12  Score=100.79  Aligned_cols=124  Identities=12%  Similarity=-0.015  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----LNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      +.+++.+|..++..|++++|+.+|++++.  |.++.+++++|.++..    .+++++|+.+|++++..+  ++.+++.+|
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg   81 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   81 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence            34455555555555555555555555554  3444555555555555    555555555555555443  445555555


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh----hhhHHHHHHHHHHHH
Q 041967          127 MARAR----LGQWEEAANDLHVASKLDYDEEIGMALKKVEPN----ARRIQEHRRKYERLR  179 (227)
Q Consensus       127 ~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~  179 (227)
                      .++..    .+++++|+.+|++++..+ ...++..++.++..    .+++.+|...+++..
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~  141 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC  141 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence            55555    555555555555555442 11334444444444    455555555554443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.47  E-value=6.4e-12  Score=101.79  Aligned_cols=137  Identities=9%  Similarity=-0.065  Sum_probs=84.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC
Q 041967           45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA------ILYAARAGVYVKLNKPNAAIRDAYVALETNPDS  118 (227)
Q Consensus        45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  118 (227)
                      ...+.....+...+..++..|+|++|+..|.+++...|...      ..++.+|.++...|++++|+..+++++...+..
T Consensus        69 ~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  148 (293)
T 2qfc_A           69 YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG  148 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred             ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence            33444556666666666777777777777776666665543      234556666666666777777776666554332


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCh-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          119 ------AKGYKIRGMARARLGQWEEAANDLHVAS---KLDYDE-----EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       119 ------~~~~~~la~~~~~~g~~~~A~~~~~~a~---~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                            ..+++.+|.+|...|+++.|+.+|++++   ...|++     .+..+++.++...|++.+|...+++....
T Consensus       149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence                  3466666777777777777777776666   334432     23446666666666777666666665544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.47  E-value=5.6e-13  Score=107.32  Aligned_cols=136  Identities=21%  Similarity=0.148  Sum_probs=120.8

Q ss_pred             HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh---
Q 041967           46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIML--------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALET---  114 (227)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---  114 (227)
                      ..+..+..+..+|..++..|++++|+.+|.+++.+        .|....++..+|.++...|++++|+..+++++.+   
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK  101 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            34457899999999999999999999999999995        5667789999999999999999999999999988   


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          115 -----NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD--------YDE-EIGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       115 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                           .|....+++.+|.++...|++++|+..|.+++.+.        |.. .++..++.++...|++.+|...+++...
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 35567899999999999999999999999999984        333 4567899999999999999999988876


Q ss_pred             H
Q 041967          181 E  181 (227)
Q Consensus       181 ~  181 (227)
                      .
T Consensus       182 ~  182 (311)
T 3nf1_A          182 I  182 (311)
T ss_dssp             H
T ss_pred             H
Confidence            6

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.46  E-value=8.6e-13  Score=107.13  Aligned_cols=134  Identities=13%  Similarity=0.015  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-----
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-----  118 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----  118 (227)
                      ....+...|..+...|+|++|+.+|.+++.+.+.      .+.++.++|.+|...|++++|+.+|++++.+.|..     
T Consensus        36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~  115 (292)
T 1qqe_A           36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            4456777788999999999999999999997532      25789999999999999999999999999998754     


Q ss_pred             -HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          119 -AKGYKIRGMARARL-GQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       119 -~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                       ..++.++|.+|... |++++|+.+|++++.+.|.+       .++..++.++...|++.+|...+++.....+
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  189 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM  189 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence             46899999999996 99999999999999998753       3456889999999999999999988876543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.46  E-value=1.6e-12  Score=108.99  Aligned_cols=136  Identities=10%  Similarity=-0.020  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-  119 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-  119 (227)
                      ...+..++.+|..++..|++++|+.+|.+++.+.+.       .+.++.++|.++...|++++|+..|++++.+.+... 
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  219 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ  219 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence            346789999999999999999999999999987443       246899999999999999999999999998865432 


Q ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cC-CCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          120 -----KGYKIRGMARARLGQWEEAANDLHVASK-----LD-YDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       120 -----~~~~~la~~~~~~g~~~~A~~~~~~a~~-----~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                           .+++++|.++..+|+++.|+.+|++++.     .+ |.. .+...++.++...|++.+|...+++.....+
T Consensus       220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence                 5899999999999999999999999999     45 555 5677999999999999999999988876543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.45  E-value=2.1e-12  Score=95.48  Aligned_cols=101  Identities=17%  Similarity=0.072  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 041967           85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPD-------SAK-----GYKIRGMARARLGQWEEAANDLHVASKL----  148 (227)
Q Consensus        85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~~~----  148 (227)
                      +..+.++|..++..|+|++|+..|+++|.++|+       +..     +|.++|.++..+|+|++|+.+|.+++.+    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            467889999999999999999999999999999       544     9999999999999999999999999999    


Q ss_pred             ---CCCh-HHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 041967          149 ---DYDE-EIG----MALKKVEPNARRIQEHRRKYERLRKERELK  185 (227)
Q Consensus       149 ---~p~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  185 (227)
                         +|++ ..|    ...+..+..+|++++|...|++..+..+.+
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence               9998 788    899999999999999999999999887754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.45  E-value=4.6e-13  Score=91.58  Aligned_cols=102  Identities=16%  Similarity=0.114  Sum_probs=95.9

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--h-HHHH
Q 041967           80 LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD--E-EIGM  156 (227)
Q Consensus        80 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~-~~~~  156 (227)
                      ++|+++.+++.+|.+++..|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|++++.++|.  + .++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            368888999999999999999999999999999999999999999999999999999999999999999999  7 7788


Q ss_pred             HHHHHHHhh-hhHHHHHHHHHHHHHH
Q 041967          157 ALKKVEPNA-RRIQEHRRKYERLRKE  181 (227)
Q Consensus       157 ~l~~~~~~~-~~~~~a~~~~~~~~~~  181 (227)
                      .++.++... |++.+|...+.+....
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            999999999 9999999999877643

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.44  E-value=5.2e-12  Score=102.75  Aligned_cols=129  Identities=9%  Similarity=0.003  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH--H
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG--M  127 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la--~  127 (227)
                      .+..++.+|..+...|++++|+..|.+     |.++.++..+|.++..+|++++|+..+++++..+|++....+..+  .
T Consensus       100 ~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~  174 (291)
T 3mkr_A          100 NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVS  174 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHH
Confidence            345677777777777777777777766     667777777777777777777777777777777777654333222  2


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ++...|++++|+..|++++..+|++ .++..++.++...|++.+|...++++....+
T Consensus       175 l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p  231 (291)
T 3mkr_A          175 LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS  231 (291)
T ss_dssp             HHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            2233467777777777777777776 5566777777777888888777777766544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.44  E-value=3e-12  Score=107.59  Aligned_cols=134  Identities=18%  Similarity=0.139  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHHh------CCC
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA----ILYAARAGVYVKLNKPNAAIRDAYVALET------NPD  117 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~  117 (227)
                      ...+..++..|..++..|+|++|+.+|++++...|.++    .+++.+|.+++..|++++|+..|++++.+      .|.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            45678899999999999999999999999999999986    58999999999999999999999999988      577


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCh-HHHHHHHHHHHhhhh-----------------HHHHHH
Q 041967          118 SAKGYKIRGMARARLGQWEEAANDLHVASKLD------YDE-EIGMALKKVEPNARR-----------------IQEHRR  173 (227)
Q Consensus       118 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~-~~~~~l~~~~~~~~~-----------------~~~a~~  173 (227)
                      ...+++.+|.++...|++++|+.+|.+++.+.      |.. .++..++.++...|+                 +.++..
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            77899999999999999999999999999983      333 456789999999999                 888888


Q ss_pred             HHHHHHHH
Q 041967          174 KYERLRKE  181 (227)
Q Consensus       174 ~~~~~~~~  181 (227)
                      .+++....
T Consensus       205 ~~~~al~~  212 (411)
T 4a1s_A          205 FYQENLKL  212 (411)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.44  E-value=1.7e-12  Score=104.39  Aligned_cols=136  Identities=22%  Similarity=0.227  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC----
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIML--------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN----  115 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----  115 (227)
                      +..+..+..+|..++..|++++|+.+|.+++..        .|....++.++|.++...|++++|+..|++++.+.    
T Consensus        66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (311)
T 3nf1_A           66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  145 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence            456778999999999999999999999999987        35567899999999999999999999999999884    


Q ss_pred             ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          116 ----PDSAKGYKIRGMARARLGQWEEAANDLHVASKL--------DYDE-EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       116 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                          |....+++.+|.++...|++++|+.+|++++.+        .|.. .++..++.++...|++.+|...++++....
T Consensus       146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                556678999999999999999999999999998        5555 557789999999999999999998887654


Q ss_pred             H
Q 041967          183 E  183 (227)
Q Consensus       183 ~  183 (227)
                      +
T Consensus       226 ~  226 (311)
T 3nf1_A          226 H  226 (311)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.43  E-value=2.3e-12  Score=93.40  Aligned_cols=134  Identities=12%  Similarity=0.028  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC----
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS----  118 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----  118 (227)
                      ..+..+..+|..++..|++++|+.+|.+++...+..      ..++.++|.++...|++++|+..+++++.+.+..    
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   86 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            467899999999999999999999999999876542      2589999999999999999999999999876543    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---h----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          119 --AKGYKIRGMARARLGQWEEAANDLHVASKLDYD---E----EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       119 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                        ..+++.+|.++...|++++|+..+++++.+.+.   .    .....++.++...|++.+|...+++..+..
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence              568999999999999999999999999987432   1    234588889999999999999998776544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.42  E-value=4.9e-12  Score=93.44  Aligned_cols=102  Identities=13%  Similarity=0.057  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041967           85 AILYAARAGVYVKLNKPNAAIRDAYVALET------------------NPDSAKGYKIRGMARARLGQWEEAANDLHVAS  146 (227)
Q Consensus        85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  146 (227)
                      +..+..+|..++..|+|.+|+..|.+++.+                  +|.+..+|+++|.|+..+|+++.|+.+|.+++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            567899999999999999999999999999                  77778999999999999999999999999999


Q ss_pred             hcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Q 041967          147 KLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELKN  186 (227)
Q Consensus       147 ~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  186 (227)
                      .++|.+ .++..++.++...|++.+|...++++....+...
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            999999 7788999999999999999999999988877644

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.40  E-value=3.6e-12  Score=96.65  Aligned_cols=134  Identities=10%  Similarity=0.013  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh---CCCC--
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALET---NPDS--  118 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~--  118 (227)
                      .+..+..+|..++..|++++|+.+|.+++..      .|..+.++.++|.++...|++++|+..+++++.+   .+++  
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            5789999999999999999999999999983      3445678999999999999999999999999988   4433  


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--h-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          119 --AKGYKIRGMARARLGQWEEAANDLHVASKLDYD--E-----EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       119 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                        ..+++.+|.++...|++++|+.++++++.+.+.  +     .+...++.++...|++.+|...+++.....+
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence              467899999999999999999999999976432  1     1235889999999999999999987775544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.40  E-value=5.5e-12  Score=104.65  Aligned_cols=98  Identities=12%  Similarity=0.030  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++.+|.+++..|+|++|+.+|++++.++|+++.+++++|.+|..+|++++|+.+|++++.++|.+..++..+|.++
T Consensus       195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~  274 (336)
T 1p5q_A          195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  274 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHH-HHHHHHHHh
Q 041967          130 ARLGQWEEA-ANDLHVASK  147 (227)
Q Consensus       130 ~~~g~~~~A-~~~~~~a~~  147 (227)
                      ..+|++.+| ...|.+++.
T Consensus       275 ~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          275 QRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            999999988 445666554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.40  E-value=1e-11  Score=100.34  Aligned_cols=132  Identities=16%  Similarity=0.130  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh------CCCCH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----AILYAARAGVYVKLNKPNAAIRDAYVALET------NPDSA  119 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~  119 (227)
                      ....++..|..++..|++++|+.+|++++...|.+    ..++..+|.++...|++++|+..+++++.+      .|...
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            45788999999999999999999999999999998    468899999999999999999999999887      45557


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhh--------------------HHHHH
Q 041967          120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARR--------------------IQEHR  172 (227)
Q Consensus       120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~--------------------~~~a~  172 (227)
                      .+++.+|.++...|++++|+..|.+++.+.|..       .++..++.++...|+                    +.++.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            799999999999999999999999999886542       145688899999999                    88888


Q ss_pred             HHHHHHHHH
Q 041967          173 RKYERLRKE  181 (227)
Q Consensus       173 ~~~~~~~~~  181 (227)
                      ..+++....
T Consensus       164 ~~~~~a~~~  172 (338)
T 3ro2_A          164 DLYEENLSL  172 (338)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888776544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.40  E-value=5.9e-12  Score=88.72  Aligned_cols=104  Identities=15%  Similarity=0.133  Sum_probs=97.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 041967           81 NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALK  159 (227)
Q Consensus        81 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~  159 (227)
                      .|.+..+++.+|.+++..|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|++++.++|.+ .++..++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            355688999999999999999999999999999999999999999999999999999999999999999998 7788999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          160 KVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       160 ~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .++...|++.+|...+++..+..+.
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~  116 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSS  116 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCC
Confidence            9999999999999999888766554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.40  E-value=5.7e-12  Score=107.87  Aligned_cols=133  Identities=19%  Similarity=0.059  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC------
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIML---------NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN------  115 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------  115 (227)
                      +..+..+|.++...|++++|+.+|++|+++         +|....+|.++|.+|..+|++++|+.++++++.+.      
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            456788999999999999999999999986         67778899999999999999999999999999873      


Q ss_pred             --CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHH
Q 041967          116 --PDSAKGYKIRGMARARLG--QWEEAANDLHVASKLDYDE-EIGMALKKVEPNA---RRIQEHRRKYERLRKERE  183 (227)
Q Consensus       116 --p~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~  183 (227)
                        +..+.++..+|.++...|  +|++|+.+|++++.++|++ ..+..++.+....   ++..++...++++.+..+
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p  206 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP  206 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence              456788999998887765  6999999999999999998 6666666665444   344566666666655433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.39  E-value=2.6e-12  Score=107.73  Aligned_cols=129  Identities=12%  Similarity=0.080  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-------H
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIML---NPT---SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-------A  119 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~  119 (227)
                      .++..|..++..|+|++|+.+|.+++.+   .++   .+.+++++|.+|...|+++.|+.++.+++.+.+..       .
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            4566999999999999999999999987   233   46799999999999999999999999999985443       4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      .++..+|.++..+|++++|+.+|.+++.+.+..       .++..++.++...|++.+|...++++...
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV  253 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            589999999999999999999999999886542       25668999999999999999999888774

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.39  E-value=5.7e-13  Score=90.14  Aligned_cols=91  Identities=22%  Similarity=0.215  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 041967           54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI-LYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARL  132 (227)
Q Consensus        54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  132 (227)
                      .+..|..++..|+|++|+..|++++..+|.++. +++++|.++...|++++|+..|++++.++|++..++.+        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            356788999999999999999999999999999 99999999999999999999999999999999888754        


Q ss_pred             CCHHHHHHHHHHHHhcCCCh
Q 041967          133 GQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       133 g~~~~A~~~~~~a~~~~p~~  152 (227)
                      +.+.+++..|.++...+|++
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHHhccCccc
Confidence            44566777777777766654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.38  E-value=9.5e-12  Score=91.15  Aligned_cols=99  Identities=19%  Similarity=0.143  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA-  128 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-  128 (227)
                      ....++.+|.+++..|+|++|+..|.+++..+|.++.+++++|.++...|++++|+..|++++.++|.+..++..++.+ 
T Consensus        46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  125 (166)
T 1a17_A           46 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  125 (166)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999988655555 


Q ss_pred             -HHHcCCHHHHHHHHHHHHhc
Q 041967          129 -RARLGQWEEAANDLHVASKL  148 (227)
Q Consensus       129 -~~~~g~~~~A~~~~~~a~~~  148 (227)
                       +...|++++|+..+.++..+
T Consensus       126 ~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          126 KIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccchHHH
Confidence             88899999999999877654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.38  E-value=1e-11  Score=103.56  Aligned_cols=132  Identities=16%  Similarity=0.121  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHHh------CCCCH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA----ILYAARAGVYVKLNKPNAAIRDAYVALET------NPDSA  119 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~  119 (227)
                      .+..++..|..++..|+|++|+.+|++++...|.++    .++..+|.+++..|++++|+..+++++.+      .|...
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            467889999999999999999999999999999984    68999999999999999999999999887      34556


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhh--------------------HHHHH
Q 041967          120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARR--------------------IQEHR  172 (227)
Q Consensus       120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~--------------------~~~a~  172 (227)
                      .+++.+|.++...|++++|+.+|.+++.+.|..       .++..++.++...|+                    +.+|.
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            799999999999999999999999999987653       246688999999999                    89898


Q ss_pred             HHHHHHHHH
Q 041967          173 RKYERLRKE  181 (227)
Q Consensus       173 ~~~~~~~~~  181 (227)
                      ..+.+....
T Consensus       168 ~~~~~al~~  176 (406)
T 3sf4_A          168 DFYEENLSL  176 (406)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888776654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.37  E-value=7.3e-11  Score=94.09  Aligned_cols=126  Identities=15%  Similarity=0.072  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCCCCHHHH
Q 041967           51 ANMTKLKAVDLIS----EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----LNKPNAAIRDAYVALETNPDSAKGY  122 (227)
Q Consensus        51 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~  122 (227)
                      +.+++.+|..+..    .+++++|+..|++++..+  ++.+++++|.+|..    .+++++|+..|++++..+  ++.++
T Consensus        38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~  113 (273)
T 1ouv_A           38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGC  113 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHH
Confidence            4567777777777    778888888888877764  67777778888777    778888888888777763  67777


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh----hhhHHHHHHHHHHHHHH
Q 041967          123 KIRGMARAR----LGQWEEAANDLHVASKLDYDEEIGMALKKVEPN----ARRIQEHRRKYERLRKE  181 (227)
Q Consensus       123 ~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~  181 (227)
                      +.+|.+|..    .+++++|+.+|++++..++ ......++.++..    .+++.+|...+++....
T Consensus       114 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          114 ASLGGIYHDGKVVTRDFKKAVEYFTKACDLND-GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            778888777    7788888888887777652 2455566777666    77777777777666543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.37  E-value=1.3e-12  Score=99.83  Aligned_cols=128  Identities=11%  Similarity=-0.059  Sum_probs=106.4

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH----------------H
Q 041967           57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA----------------K  120 (227)
Q Consensus        57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~  120 (227)
                      .+......|+|+.|...+.......+..+..+..+|.+++..|++++|+..|.+++.+.|.++                .
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            345555667888888888777666666788899999999999999999999999999999887                8


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          121 GYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       121 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      +++++|.++..+|++++|+.+|.+++.++|.+ .++..++.++...|++.+|...++++....+.
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  154 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN  154 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999998 77889999999999999999999998877654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.37  E-value=3.8e-12  Score=104.03  Aligned_cols=128  Identities=12%  Similarity=0.033  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC------
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS------  118 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------  118 (227)
                      +..+...|.++...|+|++|+.+|++++.+.+.      .+.++.++|.+|.. |++++|+.+|++++.+.|..      
T Consensus        76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~  154 (307)
T 2ifu_A           76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA  154 (307)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence            456777777777778888888888887776432      13567777888777 88888888888887776543      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          119 AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       119 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      ..++.++|.++..+|++++|+.+|++++.+.|.+       ..+..++.++...|++.+|...+++..
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            4567777888888888888888888887775532       123455566666677778877777665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.37  E-value=9.7e-12  Score=110.20  Aligned_cols=138  Identities=12%  Similarity=0.024  Sum_probs=124.2

Q ss_pred             hHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHh
Q 041967           47 MRDAANMTKLKAVDLISEGK----------LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN--KPNAAIRDAYVALET  114 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~  114 (227)
                      .+....+|..++.++...|+          +++++..+.+++..+|++..+|+.++.++.+.+  ++++++..+++++++
T Consensus        59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~  138 (567)
T 1dce_A           59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA  138 (567)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence            34567889999999999888          999999999999999999999999999999999  669999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh--------------hhHHHHHHHHHHH
Q 041967          115 NPDSAKGYKIRGMARARLG-QWEEAANDLHVASKLDYDE-EIGMALKKVEPNA--------------RRIQEHRRKYERL  178 (227)
Q Consensus       115 ~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~--------------~~~~~a~~~~~~~  178 (227)
                      +|.+..+|..++.++..+| .+++++.++.++++.+|.| .+|...+.+....              +.++++...+.++
T Consensus       139 d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~a  218 (567)
T 1dce_A          139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA  218 (567)
T ss_dssp             CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHH
Confidence            9999999999999999999 9999999999999999999 8898888887774              6677777777777


Q ss_pred             HHHHHh
Q 041967          179 RKEREL  184 (227)
Q Consensus       179 ~~~~~~  184 (227)
                      ....+.
T Consensus       219 i~~~P~  224 (567)
T 1dce_A          219 FFTDPN  224 (567)
T ss_dssp             HHHCSS
T ss_pred             HhhCCC
Confidence            665554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.36  E-value=3e-12  Score=87.30  Aligned_cols=73  Identities=21%  Similarity=0.192  Sum_probs=65.5

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967           80 LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus        80 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      .+|+++.+++++|.+++..|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|++++.+.|..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            4789999999999999999999999999999999999999999999999999999999999999999887653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.36  E-value=2e-11  Score=102.26  Aligned_cols=132  Identities=16%  Similarity=0.026  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-----
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPD-----  117 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----  117 (227)
                      .+..++.+|.+++..|+++.|+.++.+++...+.       .+.++.++|.++...|++++|+..|++++.+.+.     
T Consensus       140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  219 (378)
T 3q15_A          140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR  219 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            4555666666666666666666666666654322       1335556666666666666666666666554221     


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          118 -SAKGYKIRGMARARLGQWEEAANDLHVASK-----LDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       118 -~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-----~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                       ...+++++|.++..+|+++.|+.+|++++.     .+|.. .+...++.++...|++.+|...+++....
T Consensus       220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence             123555666666666666666666666666     44444 33445666666666666666666555443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=2.5e-11  Score=87.16  Aligned_cols=105  Identities=12%  Similarity=0.051  Sum_probs=98.0

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHH
Q 041967           80 LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIG  155 (227)
Q Consensus        80 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~  155 (227)
                      .+|.++..++.+|.+++..|++++|+..|++++..+|++   ..+++.+|.++...|++++|+..|.+++.++|.+ .++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            467789999999999999999999999999999999998   8999999999999999999999999999999998 778


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          156 MALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       156 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ..++.++...|++.+|...+++.....+.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            89999999999999999999888876554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.35  E-value=1.4e-11  Score=99.80  Aligned_cols=128  Identities=13%  Similarity=0.002  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-------CCCH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETN-------PDSA  119 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~  119 (227)
                      .+..+|..++..+++++|+.+|.+++...+..      ..++.++|.+|...|++++|+.+|++++...       +...
T Consensus       117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (293)
T 3u3w_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV  196 (293)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence            34446666666666666666666666643321      2356666666666666666666666666321       1123


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhh-HHHHHHHHHHHHH
Q 041967          120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARR-IQEHRRKYERLRK  180 (227)
Q Consensus       120 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~-~~~a~~~~~~~~~  180 (227)
                      .+++++|.+|..+|++++|+.++++++.+.+..       .++..++.++...|+ +++|...++++..
T Consensus       197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            456666666666666666666666666654321       234466666666663 4666666655543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.35  E-value=2.7e-11  Score=99.33  Aligned_cols=136  Identities=10%  Similarity=-0.034  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCcHHHHHHHHHHHHhCCCCH
Q 041967           49 DAANMTKLKAVDLISEG--KLEDAIGQLTEAIMLNPTSAILYAARAGVY----VKL---NKPNAAIRDAYVALETNPDSA  119 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~g~~~----~~~---~~~~~A~~~~~~al~~~p~~~  119 (227)
                      +...+|..+|.++...+  ++++++..+.++|..+|.+..+|..++.++    ...   +++++++..+.+++..+|.+.
T Consensus        65 ~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny  144 (306)
T 3dra_A           65 SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH  144 (306)
T ss_dssp             TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH
Confidence            44567777888888777  888888888888888888888888888887    666   677888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHh
Q 041967          120 KGYKIRGMARARLGQWE--EAANDLHVASKLDYDE-EIGMALKKVEPNARR------IQEHRRKYERLRKEREL  184 (227)
Q Consensus       120 ~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~  184 (227)
                      .+|..++.++..+|.++  +++..+.+++..+|.| .+|...+.+....+.      +.++...+.+.....+.
T Consensus       145 ~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~  218 (306)
T 3dra_A          145 HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ  218 (306)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC
Confidence            88888888888888777  7888888888888887 777777777777665      66666666666655443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.35  E-value=5.3e-11  Score=82.46  Aligned_cols=105  Identities=22%  Similarity=0.223  Sum_probs=94.0

Q ss_pred             hCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 041967           80 LNPTS-AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMA  157 (227)
Q Consensus        80 ~~p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~  157 (227)
                      .+|.. +.+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..|.+++...|.+ ..+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            35555 77899999999999999999999999999999999999999999999999999999999999999988 77889


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          158 LKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       158 l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ++.++...|++.+|...+++.....+.
T Consensus        83 la~~~~~~~~~~~A~~~~~~~~~~~~~  109 (125)
T 1na0_A           83 LGNAYYKQGDYDEAIEYYQKALELDPN  109 (125)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999888766543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.35  E-value=2.7e-11  Score=97.95  Aligned_cols=103  Identities=19%  Similarity=0.072  Sum_probs=97.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHH
Q 041967           82 PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKK  160 (227)
Q Consensus        82 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~  160 (227)
                      |.++..++.+|..++..|++++|+..|++++..+|+++.+++++|.++..+|++++|+..|.+++.++|++ .++..++.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999 77889999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          161 VEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       161 ~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ++...|++.+|...++++.+..+.
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~  104 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKE  104 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc
Confidence            999999999999999988877663

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.34  E-value=2.4e-10  Score=92.44  Aligned_cols=123  Identities=14%  Similarity=0.010  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHH---HhCCCCH--
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVAL---ETNPDSA--  119 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~--  119 (227)
                      ...++..|..+...|++++|+.+|.+++...+..      ..+++++|.+|...|++++|+..|++++   ...|++.  
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~  194 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence            3456778999999999999999999999876543      5689999999999999999999999999   5566643  


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH-------HHHHHHHHHHhhhhHHHHHH
Q 041967          120 --KGYKIRGMARARLGQWEEAANDLHVASKLDYDEE-------IGMALKKVEPNARRIQEHRR  173 (227)
Q Consensus       120 --~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-------~~~~l~~~~~~~~~~~~a~~  173 (227)
                        .+++++|.+|..+|++++|+.+|++++.+.+...       +...++.++...|++++|..
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~  257 (293)
T 2qfc_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIE  257 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence              6899999999999999999999999999874321       12355666666666555543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.34  E-value=3.2e-13  Score=116.70  Aligned_cols=119  Identities=13%  Similarity=0.037  Sum_probs=110.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHH
Q 041967           65 GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS---------------AKGYKIRGMAR  129 (227)
Q Consensus        65 ~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~  129 (227)
                      ++|++|+..|..++...|..+.++.++|.+++..|+|.+|+..|++++.++|.+               ..+|+++|.||
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  327 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY  327 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            456788888888888889899999999999999999999999999999999999               68999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ..+|++++|+.+|.+++.++|++ .++..++.++...|++.+|...|+++.+..+
T Consensus       328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P  382 (457)
T 1kt0_A          328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  382 (457)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999 7788999999999999999999998876654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.34  E-value=1e-11  Score=103.55  Aligned_cols=135  Identities=11%  Similarity=0.005  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC----
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS----  118 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----  118 (227)
                      ..+..+..+|.+++..|++++|+.+|.+++...|..      ..++.++|.++...|++++|+..+++++.+.|..    
T Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  264 (406)
T 3sf4_A          185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA  264 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch
Confidence            446689999999999999999999999999876554      3389999999999999999999999999987766    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          119 --AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       119 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                        ..++..+|.++...|++++|+.+|++++.+.+..       .++..++.++...|++.+|...+++..+..+
T Consensus       265 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  338 (406)
T 3sf4_A          265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  338 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence              6789999999999999999999999999985432       3456889999999999999999988876644

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.34  E-value=8.7e-12  Score=104.76  Aligned_cols=136  Identities=10%  Similarity=-0.019  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC----
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS----  118 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----  118 (227)
                      ..+..+..+|..++..|++++|+.+|.+++.+.|..      ..++.++|.++...|++++|+..|++++.+.|..    
T Consensus       221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  300 (411)
T 4a1s_A          221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE  300 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence            345689999999999999999999999999987653      2389999999999999999999999999988754    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          119 --AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       119 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                        ..++..+|.++...|++++|+.+|++++.+.+..       .++..++.++...|++.+|...+++.....+.
T Consensus       301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence              6789999999999999999999999999986542       24668899999999999999999888766553

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.34  E-value=2.2e-11  Score=104.19  Aligned_cols=133  Identities=11%  Similarity=0.002  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           51 ANMTKLKAVDLIS--EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK---LNKPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        51 ~~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      +..+...|..++.  .++|++|+.+|++++.++|+++.++.++|.+++.   .+++++|+..+++++.++|+++.++..+
T Consensus       136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l  215 (472)
T 4g1t_A          136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL  215 (472)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence            4556667766654  5679999999999999999999999999988654   5778899999999999999999999999


Q ss_pred             HHHHHHc----CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          126 GMARARL----GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       126 a~~~~~~----g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      |.++..+    |++++|...|++++.++|.+ .++..++.++...|++.++...+.++.+..+
T Consensus       216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  278 (472)
T 4g1t_A          216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP  278 (472)
T ss_dssp             HHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC
Confidence            8877665    56778999999999999998 7788999999999999999999988876654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.34  E-value=4.1e-11  Score=82.30  Aligned_cols=101  Identities=18%  Similarity=0.126  Sum_probs=93.7

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 041967           84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVE  162 (227)
Q Consensus        84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~  162 (227)
                      .+..++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..+.+++.++|.+ .++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            356889999999999999999999999999999999999999999999999999999999999999998 7788999999


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHh
Q 041967          163 PNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       163 ~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ...|++.+|...+++.....+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~  104 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEAN  104 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHhhHHHHHHHHHHHHHcCCC
Confidence            9999999999999888765443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.33  E-value=1.5e-11  Score=86.00  Aligned_cols=105  Identities=18%  Similarity=0.095  Sum_probs=97.0

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHH
Q 041967           80 LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMAL  158 (227)
Q Consensus        80 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l  158 (227)
                      .+|.++..++.+|.+++..|+++.|+..+++++..+|.+..+++.+|.++...|++++|+..|.+++..+|.+ .++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            3455678999999999999999999999999999999999999999999999999999999999999999998 778899


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          159 KKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       159 ~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      +.++...|++.+|...+++..+..+.
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~p~  112 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELDPD  112 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence            99999999999999999888776553

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.33  E-value=1.2e-10  Score=95.52  Aligned_cols=133  Identities=8%  Similarity=-0.091  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKL-EDAIGQLTEAIMLNPTSAILYAARAGVYVKLN--KPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      ....+......++.|.+ ++|+.++.++|.++|.+..+|+.++.++...+  .+++++..++.++..+|.+..+|+.++.
T Consensus        32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~  111 (306)
T 3dra_A           32 YKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQL  111 (306)
T ss_dssp             HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence            34455555666677776 68999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             HH----HHc---CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHH
Q 041967          128 AR----ARL---GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQ--EHRRKYERLRKERE  183 (227)
Q Consensus       128 ~~----~~~---g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~  183 (227)
                      ++    ...   +++.+++..+.+++..+|.| .+|...+.+....+.+.  ++...+.++....+
T Consensus       112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~  177 (306)
T 3dra_A          112 IIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL  177 (306)
T ss_dssp             HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence            99    777   78999999999999999999 88999999999998887  88887777765544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.32  E-value=2.2e-11  Score=80.45  Aligned_cols=83  Identities=25%  Similarity=0.275  Sum_probs=75.7

Q ss_pred             CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH
Q 041967           83 TSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKV  161 (227)
Q Consensus        83 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~  161 (227)
                      .++.+++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+.+|.+++.++|.+ .++..++.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            3577899999999999999999999999999999999999999999999999999999999999999998 666677766


Q ss_pred             HHhh
Q 041967          162 EPNA  165 (227)
Q Consensus       162 ~~~~  165 (227)
                      +...
T Consensus        87 ~~~~   90 (91)
T 1na3_A           87 KQKQ   90 (91)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.31  E-value=5.2e-11  Score=92.19  Aligned_cols=127  Identities=15%  Similarity=0.009  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN----KPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      .+.+++.+|..++..+++++|+..|+++++.  .++.+++++|.+|.. +    ++++|+.+|++++.  +.++.+++++
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~L   91 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVL   91 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHH
Confidence            5788999999999999999999999999875  578999999999988 6    89999999999964  5789999999


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHh----hhhHHHHHHHHHHHHHH
Q 041967          126 GMARAR----LGQWEEAANDLHVASKLDYD---EEIGMALKKVEPN----ARRIQEHRRKYERLRKE  181 (227)
Q Consensus       126 a~~~~~----~g~~~~A~~~~~~a~~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~  181 (227)
                      |.+|..    .+++..|+.+|+++...+|.   ..+...|+.++..    .+++.+|...+++....
T Consensus        92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A           92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            999988    88999999999999999985   3667788888887    77889999988887654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.31  E-value=2.9e-11  Score=98.74  Aligned_cols=133  Identities=14%  Similarity=0.059  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-----
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-----  118 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----  118 (227)
                      ....+...|..+...|+|++|+.+|.+++.+.+..      ..++.++|.+|..+|++++|+.+|++++.+.+..     
T Consensus        35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~  114 (307)
T 2ifu_A           35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT  114 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            44566677899999999999999999999986532      5689999999999999999999999999885432     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          119 -AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       119 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                       ..++.++|.+|.. |++++|+.+|++++.+.|..       .++..++.++...|++.+|...+++.....+
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  186 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK  186 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence             4688999999999 99999999999999997642       3456889999999999999999988877654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.30  E-value=1.1e-11  Score=100.07  Aligned_cols=134  Identities=11%  Similarity=0.004  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC----
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS----  118 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----  118 (227)
                      ..+..+..+|..++..|++++|+.+|.+++...+..      ..++.++|.++...|++++|+..+++++.+.+..    
T Consensus       181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  260 (338)
T 3ro2_A          181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA  260 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh
Confidence            345688999999999999999999999999875542      3489999999999999999999999999887665    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          119 --AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       119 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                        ..++..+|.++...|++++|+.+|++++.+.+..       .++..++.++...|++.+|...+++.....
T Consensus       261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence              6789999999999999999999999999886542       245688999999999999999998876543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.30  E-value=3.5e-11  Score=84.03  Aligned_cols=82  Identities=13%  Similarity=0.056  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      .+..+..++.+|.+++..|+|++|+.+|++++..+|+++.+++++|.++...|++++|+..|++++...|+++.......
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999987655443


Q ss_pred             HH
Q 041967          127 MA  128 (227)
Q Consensus       127 ~~  128 (227)
                      .+
T Consensus       103 ai  104 (117)
T 3k9i_A          103 AI  104 (117)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.29  E-value=1.3e-10  Score=97.30  Aligned_cols=129  Identities=16%  Similarity=0.025  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-----hCCC
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT------SAILYAARAGVYVKLNKPNAAIRDAYVALE-----TNPD  117 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-----~~p~  117 (227)
                      ..+..+..+|.++...|+|++|+.+|.+++.+.+.      .+.++.++|.+|...|++++|+..|++++.     .+|.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence            45788999999999999999999999999986431      246899999999999999999999999999     7888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----h-HHHHHHHHHHHhhhh---HHHHHHHHHH
Q 041967          118 SAKGYKIRGMARARLGQWEEAANDLHVASKLDYD-----E-EIGMALKKVEPNARR---IQEHRRKYER  177 (227)
Q Consensus       118 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-----~-~~~~~l~~~~~~~~~---~~~a~~~~~~  177 (227)
                      ...+++.+|.++..+|++++|+.++++++.+.+.     . .....++.+....++   +.++...+++
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~  328 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK  328 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            8999999999999999999999999999998543     2 223455555555555   4455544433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.29  E-value=4.2e-11  Score=84.32  Aligned_cols=99  Identities=11%  Similarity=-0.066  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----HHHHHH
Q 041967           86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA---KGYKIRGMARARLGQWEEAANDLHVASKLDYDE----EIGMAL  158 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~l  158 (227)
                      .+++.+|.+++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|.+++..+|++    .++..+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3578899999999999999999999999999998   899999999999999999999999999999986    336689


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          159 KKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       159 ~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      +.++...|++.+|...++++.+..+.
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            99999999999999999998877654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.27  E-value=1.8e-10  Score=95.22  Aligned_cols=138  Identities=12%  Similarity=0.022  Sum_probs=121.4

Q ss_pred             hHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHh
Q 041967           47 MRDAANMTKLKAVDLISEGK----------LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK--PNAAIRDAYVALET  114 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~  114 (227)
                      ++....+|..++.++...+.          +++++.++..++..+|.+..+|..++.++...+.  +++++..+.+++..
T Consensus        60 nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~  139 (331)
T 3dss_A           60 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA  139 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh
Confidence            34556788888888877665          7899999999999999999999999999999994  89999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh--------------hhHHHHHHHHHHH
Q 041967          115 NPDSAKGYKIRGMARARLGQ-WEEAANDLHVASKLDYDE-EIGMALKKVEPNA--------------RRIQEHRRKYERL  178 (227)
Q Consensus       115 ~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~--------------~~~~~a~~~~~~~  178 (227)
                      +|.|..+|..++.++...|. +++++.++.+++..+|.| .+|...+.+....              +.+.++...+...
T Consensus       140 dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~a  219 (331)
T 3dss_A          140 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA  219 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHH
Confidence            99999999999999999998 699999999999999999 8898888888776              5677777777777


Q ss_pred             HHHHHh
Q 041967          179 RKEREL  184 (227)
Q Consensus       179 ~~~~~~  184 (227)
                      ....+.
T Consensus       220 i~~~P~  225 (331)
T 3dss_A          220 FFTDPN  225 (331)
T ss_dssp             HHHSTT
T ss_pred             HHhCCC
Confidence            665554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.26  E-value=1.6e-10  Score=95.44  Aligned_cols=138  Identities=8%  Similarity=-0.043  Sum_probs=120.5

Q ss_pred             hHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhCCCCHHHHH
Q 041967           47 MRDAANMTKLKAVDLISEG--KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK-PNAAIRDAYVALETNPDSAKGYK  123 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~  123 (227)
                      .+....+|..++.++...+  .|++++.++.+++..+|.+..+|..++.+....|. +++++.++.++|..+|.|..+|.
T Consensus       104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~  183 (331)
T 3dss_A          104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  183 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            3346788999999999988  49999999999999999999999999999999998 59999999999999999999999


Q ss_pred             HHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh-----------hhHHHHHHHHHH
Q 041967          124 IRGMARARL--------------GQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA-----------RRIQEHRRKYER  177 (227)
Q Consensus       124 ~la~~~~~~--------------g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~-----------~~~~~a~~~~~~  177 (227)
                      .++.++..+              +.+++++.++.+++.++|+| .+|..+..+....           +.++++...+..
T Consensus       184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e  263 (331)
T 3dss_A          184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE  263 (331)
T ss_dssp             HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence            999999988              45889999999999999999 7787676666554           567777777777


Q ss_pred             HHHHHHh
Q 041967          178 LRKEREL  184 (227)
Q Consensus       178 ~~~~~~~  184 (227)
                      +....+.
T Consensus       264 lle~~pd  270 (331)
T 3dss_A          264 LQELEPE  270 (331)
T ss_dssp             HHHHCTT
T ss_pred             HHhhCcc
Confidence            7666554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.25  E-value=3.4e-10  Score=91.52  Aligned_cols=134  Identities=9%  Similarity=-0.079  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-----
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI------LYAARAGVYVKLNKPNAAIRDAYVALETNPDS-----  118 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----  118 (227)
                      ....+...+..++..|+|++|+..|++++...+..+.      .+..+|.++...+++++|+..|++++.+.+..     
T Consensus        74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  153 (293)
T 3u3w_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence            4556677789999999999999999999998877654      34468999988899999999999999975443     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC--h--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          119 -AKGYKIRGMARARLGQWEEAANDLHVASKLD----YD--E--EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       119 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----p~--~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                       ..++..+|.+|..+|+++.|+.+|++++...    ..  .  .++.+++.++...|++.+|...++++....+
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~  227 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence             3479999999999999999999999999531    11  1  3456999999999999999999988876654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.25  E-value=1.4e-10  Score=79.29  Aligned_cols=69  Identities=14%  Similarity=0.160  Sum_probs=66.6

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967           84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus        84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ++..++.+|.+++..|++++|+..|++++.++|.++.+++++|.++..+|++++|+..|.+++.++|++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            367899999999999999999999999999999999999999999999999999999999999999986

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.25  E-value=1.8e-10  Score=100.75  Aligned_cols=132  Identities=12%  Similarity=-0.046  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA-ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ....|...|..+...|++++|...|++++...|.++ .+|..+|.++.+.|++++|+..|++++...|.....+...+.+
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~  399 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM  399 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence            467899999999999999999999999999999986 5999999999999999999999999999999888888777766


Q ss_pred             -HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          129 -RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       129 -~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                       +...|+++.|...|+++++.+|++ .+|..++......|+..+++..|+++...
T Consensus       400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence             456999999999999999999998 88889999999999999999999888764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.24  E-value=9.1e-11  Score=82.05  Aligned_cols=100  Identities=10%  Similarity=0.045  Sum_probs=91.0

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh--------HHH
Q 041967           84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE--------EIG  155 (227)
Q Consensus        84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--------~~~  155 (227)
                      .+..++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+.+|.+++.+.|.+        .++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999998753        346


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          156 MALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       156 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ..++.++...|++.+|...+++.....+
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            6889999999999999999988876544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.24  E-value=1.7e-10  Score=89.22  Aligned_cols=129  Identities=15%  Similarity=-0.037  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCC--CCH
Q 041967           50 AANMTKLKAVDLISEG----KLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----LNKPNAAIRDAYVALETNP--DSA  119 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p--~~~  119 (227)
                      .+.+++.+|..+.. +    ++++|+.+|++++.  +.++.+++++|.+|..    .+++.+|+.+|++++...|  .++
T Consensus        49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~  125 (212)
T 3rjv_A           49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAV  125 (212)
T ss_dssp             CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHH
T ss_pred             CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchH
Confidence            46789999999988 6    99999999999965  5689999999999988    8999999999999999988  469


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-h-----hHHHHHHHHHHHHHH
Q 041967          120 KGYKIRGMARAR----LGQWEEAANDLHVASKLDYDEEIGMALKKVEPNA-R-----RIQEHRRKYERLRKE  181 (227)
Q Consensus       120 ~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~  181 (227)
                      .+++.+|.+|..    .++++.|+.+|+++..+.+.......++.++..- |     ++.+|...+++....
T Consensus       126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            999999999999    8999999999999999933336777888887643 3     789999999877654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.24  E-value=1e-11  Score=103.15  Aligned_cols=101  Identities=14%  Similarity=0.038  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH-HH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA-RA  130 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~  130 (227)
                      ..++++|.+++..|+|++|+.+|.+++.++|+++.+|+++|.+|+.+|++++|+.+|++++.++|++..++..++.+ ..
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999998 45


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCh
Q 041967          131 RLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ..+..+.+...|.+++...|.+
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCC
Confidence            5667788899999999999876

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.23  E-value=5.2e-11  Score=87.80  Aligned_cols=106  Identities=13%  Similarity=0.086  Sum_probs=90.8

Q ss_pred             HcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967           97 KLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW----------EEAANDLHVASKLDYDE-EIGMALKKVEPNA  165 (227)
Q Consensus        97 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~  165 (227)
                      +.+.|++|+..+++++.++|+++.+|+++|.++..++++          ++|+..|+++++++|++ .++..++.++...
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            456799999999999999999999999999999999875          59999999999999998 8888999999877


Q ss_pred             h-----------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHH
Q 041967          166 R-----------RIQEHRRKYERLRKERELKNFERERQRKQAGADREAL  203 (227)
Q Consensus       166 ~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (227)
                      |           ++++|...|++++..++..... .+..+.....|++-
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y-~~al~~~~ka~el~  141 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY-LKSLEMTAKAPQLH  141 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHTHHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHhCHhcc
Confidence            5           8999999999999998875444 55555556666543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.23  E-value=1.4e-10  Score=96.39  Aligned_cols=122  Identities=14%  Similarity=0.042  Sum_probs=81.8

Q ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHH
Q 041967           60 DLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-KPNAAIRDAYVALETNPDSAKGYKIRGMARARL-G-QWE  136 (227)
Q Consensus        60 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~  136 (227)
                      .....+..++|+.++.++|.++|.+..+|+.++.++...| .+++++..++.++..+|.+..+|..++.++..+ + ++.
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence            3333344456777777777777777777777777777776 477777777777777777777777777777766 6 667


Q ss_pred             HHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHH--------HHHHHHHHHHHH
Q 041967          137 EAANDLHVASKLDYDE-EIGMALKKVEPNARRIQ--------EHRRKYERLRKE  181 (227)
Q Consensus       137 ~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~  181 (227)
                      +++..+.+++..+|.| .+|...+.+....+.+.        ++...+.++...
T Consensus       143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~  196 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV  196 (349)
T ss_dssp             HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence            7777777777777776 66666666666666555        555555555543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.22  E-value=1.3e-11  Score=107.19  Aligned_cols=104  Identities=18%  Similarity=0.142  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ..+..++.+|.+++..|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.+
T Consensus        38 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           38 SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             --HHHcCCHHHHHHHHH-----------HHHhcCCCh
Q 041967          129 --RARLGQWEEAANDLH-----------VASKLDYDE  152 (227)
Q Consensus       129 --~~~~g~~~~A~~~~~-----------~a~~~~p~~  152 (227)
                        +...|++++|+..+.           +++.++|+.
T Consensus       118 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          118 NKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence              889999999999999           888888763

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.21  E-value=1.4e-09  Score=90.45  Aligned_cols=102  Identities=14%  Similarity=0.087  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEG-KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL-N-KPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      ....+|..++.++...| .+++++..+.++|..+|++..+|..++.++... + ++++++..+.+++..+|.|..+|..+
T Consensus        86 ~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R  165 (349)
T 3q7a_A           86 AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYL  165 (349)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45678999999999999 599999999999999999999999999999998 8 99999999999999999999999999


Q ss_pred             HHHHHHcCCHH--------HHHHHHHHHHhcCC
Q 041967          126 GMARARLGQWE--------EAANDLHVASKLDY  150 (227)
Q Consensus       126 a~~~~~~g~~~--------~A~~~~~~a~~~~p  150 (227)
                      +.++..+|.++        +++.++.+++..+|
T Consensus       166 ~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp  198 (349)
T 3q7a_A          166 HWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG  198 (349)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhccccccchhhHHHHHHHHHHHHHhCC
Confidence            99999998887        89999999988875

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.20  E-value=9.6e-11  Score=94.54  Aligned_cols=133  Identities=18%  Similarity=0.071  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS--AKGYKIRGMA  128 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~  128 (227)
                      .+.....+..+...|+|++|.+.|..++...|... ..+.+|.++++.+++..|+..|+.++...+..  ..+++++|.+
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence            46777889999999999999999999999999888 99999999999999999999999887653221  3589999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcC--CC-h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          129 RARLGQWEEAANDLHVASKLD--YD-E-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~--p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      +..+|++++|+.+|+++..-.  |. . +....++.++..+|+.++|...++++....+.
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            999999999999999998655  55 4 56789999999999999999999999877665

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.20  E-value=7.1e-11  Score=80.40  Aligned_cols=81  Identities=15%  Similarity=0.166  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC--HHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS--AKGYKIRG  126 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la  126 (227)
                      +.+..++.+|.+++..|+|++|+..|++++.++|+++.+|+++|.+|...|++++|+..|++++.+.|..  ......+.
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~   84 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ   84 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999999987643  33333344


Q ss_pred             HHH
Q 041967          127 MAR  129 (227)
Q Consensus       127 ~~~  129 (227)
                      ..+
T Consensus        85 ~~l   87 (100)
T 3ma5_A           85 DAK   87 (100)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.20  E-value=1.9e-10  Score=96.78  Aligned_cols=94  Identities=14%  Similarity=0.093  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      +..+..+..+|.+++..|+|++|+.+|++++.++|+++.+++++|.+|..+|++++|+.+|++++.++|++..++..++.
T Consensus       270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~  349 (370)
T 1ihg_A          270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHH
Q 041967          128 ARARLGQWEEAAND  141 (227)
Q Consensus       128 ~~~~~g~~~~A~~~  141 (227)
                      ++..+++++++.+.
T Consensus       350 ~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          350 VKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988877643

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.20  E-value=4.4e-10  Score=98.28  Aligned_cols=136  Identities=13%  Similarity=-0.051  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHH-------CCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLIS-------EGKLE-------DAIGQLTEAIM-LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE  113 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  113 (227)
                      ..+..|+..|..+..       .|+++       +|+..|++|+. .+|++..+|..+|.++...|++++|+..|++++.
T Consensus       270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~  349 (530)
T 2ooe_A          270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA  349 (530)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence            456889999999886       79987       99999999997 8999999999999999999999999999999999


Q ss_pred             hCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHh
Q 041967          114 TNPDSA-KGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKV-EPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       114 ~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ++|.++ .+|..+|.++...|+++.|...|.+++...|.. ..+...+.+ ....|+..+|...|++..+..+.
T Consensus       350 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~  423 (530)
T 2ooe_A          350 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD  423 (530)
T ss_dssp             SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred             ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC
Confidence            999986 699999999999999999999999999998876 444433333 23588999999999988877664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.19  E-value=8.3e-10  Score=97.83  Aligned_cols=134  Identities=18%  Similarity=0.116  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHHhCCCC
Q 041967           50 AANMTKLKAVDLISEGKL-EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK----------PNAAIRDAYVALETNPDS  118 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~  118 (227)
                      ...............|++ ++|+..+.++|..+|++..+|+.++.++...|.          +++++..+++++..+|++
T Consensus        27 ~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~  106 (567)
T 1dce_A           27 LYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS  106 (567)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC
Confidence            334445555566677766 678999999999999999999999999999988          999999999999999999


Q ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Q 041967          119 AKGYKIRGMARARLG--QWEEAANDLHVASKLDYDE-EIGMALKKVEPNAR-RIQEHRRKYERLRKERE  183 (227)
Q Consensus       119 ~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~  183 (227)
                      ..+|+.++.++..++  ++++++..+.++++++|.| .+|...+.+....+ .++++...+.+..+..+
T Consensus       107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p  175 (567)
T 1dce_A          107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  175 (567)
T ss_dssp             HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence            999999999999999  7799999999999999999 88999999999888 77777777666654433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.15  E-value=3.1e-10  Score=76.36  Aligned_cols=86  Identities=19%  Similarity=0.273  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAK-GYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA  165 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~  165 (227)
                      .+.+|.+++..|++++|+..|++++..+|.++. +++.+|.++..+|++++|+.+|++++.++|++ .++..        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            367899999999999999999999999999999 99999999999999999999999999999998 44421        


Q ss_pred             hhHHHHHHHHHHHHHH
Q 041967          166 RRIQEHRRKYERLRKE  181 (227)
Q Consensus       166 ~~~~~a~~~~~~~~~~  181 (227)
                      +.+.++...|++..+.
T Consensus        75 ~~~~~a~~~~~~~~~~   90 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYN   90 (99)
T ss_dssp             HHHHHHHHHHCCTTHH
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            4455555555544433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.13  E-value=8.6e-10  Score=83.33  Aligned_cols=121  Identities=14%  Similarity=0.122  Sum_probs=98.0

Q ss_pred             HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcC
Q 041967           61 LISEGKLEDAIGQLTEAIMLNP-TSAILYAARAGVYVKLNKPNAAIRDAYVALE------TNPDSAKGYKIRGMARARLG  133 (227)
Q Consensus        61 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g  133 (227)
                      ++..|+|++|...++.... +| ..+.++..+|.++...|++++|+..+++++.      ..|....+++.+|.++...|
T Consensus         2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            4678999999996555444 55 5678999999999999999999999999998      34455678999999999999


Q ss_pred             CHHHHHHHHHHHHhc---CCC---h--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          134 QWEEAANDLHVASKL---DYD---E--EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       134 ~~~~A~~~~~~a~~~---~p~---~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      ++++|+.+|.+++.+   .++   .  .+...++.++...|++.+|...+++.....
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            999999999999998   442   2  335688999999999999999998877553

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.12  E-value=6.9e-10  Score=80.06  Aligned_cols=101  Identities=16%  Similarity=0.088  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC------
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNPD------  117 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------  117 (227)
                      .+..+..+|..++..|++++|+.+|.+++...+..      ..++.++|.++...|++++|+..+++++.+.+.      
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  127 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG  127 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence            34689999999999999999999999999876543      568999999999999999999999999987432      


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 041967          118 SAKGYKIRGMARARLGQWEEAANDLHVASKLDY  150 (227)
Q Consensus       118 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  150 (227)
                      ...++..+|.++...|++++|+.++.+++.+..
T Consensus       128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            246889999999999999999999999987754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.08  E-value=2e-09  Score=89.45  Aligned_cols=132  Identities=11%  Similarity=0.046  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC--------
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETN--------  115 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------  115 (227)
                      ....+..+|..++..|++++|+..+.+++...|..      ..++.++|.++...|++++|+..+++++.+.        
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  131 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL  131 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            45678888999999999999999999999875542      2457889999999999999999999998875        


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          116 PDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE------EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       116 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      |....++..+|.++...|++++|...+.+++.+.+..      ..+..++.+....|++.+|...+++....
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~  203 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL  203 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3345678889999999999999999999999887752      34557888889999999999888777654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.08  E-value=2e-09  Score=78.53  Aligned_cols=86  Identities=12%  Similarity=-0.029  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 041967           67 LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN---KPNAAIRDAYVALETN-P-DSAKGYKIRGMARARLGQWEEAAND  141 (227)
Q Consensus        67 ~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~  141 (227)
                      ...+.+.|.+.+..+|.+..+.+++|+++.+.+   ++++++..++.+++.+ | .+.+++|++|..+.++|+|+.|..+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            456777888888888899999999999999988   6779999999999999 7 5689999999999999999999999


Q ss_pred             HHHHHhcCCCh
Q 041967          142 LHVASKLDYDE  152 (227)
Q Consensus       142 ~~~a~~~~p~~  152 (227)
                      ++++++++|+|
T Consensus        94 ~~~lL~ieP~n  104 (152)
T 1pc2_A           94 VRGLLQTEPQN  104 (152)
T ss_dssp             HHHHHHHCTTC
T ss_pred             HHHHHhcCCCC
Confidence            99999999998

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.07  E-value=3.2e-09  Score=71.47  Aligned_cols=72  Identities=17%  Similarity=0.083  Sum_probs=67.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967           81 NPTSAILYAARAGVYVKLNK---PNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus        81 ~p~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      +|.++.++..+|.+++..++   ..+|...+++++.++|+++.+++.+|..++..|+|.+|+.+|++++..+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            68899999999999987766   7999999999999999999999999999999999999999999999999984

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.07  E-value=3.9e-09  Score=87.69  Aligned_cols=134  Identities=11%  Similarity=-0.069  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH----
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA-----ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA----  119 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----  119 (227)
                      ..+..+...|..++..|++++|+..+.+++...|...     .++..+|.++...|++++|+..+++++.+.|...    
T Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   91 (373)
T 1hz4_A           12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   91 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence            3567889999999999999999999999999887642     2688999999999999999999999998765432    


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------Ch-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          120 --KGYKIRGMARARLGQWEEAANDLHVASKLDY--------DE-EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       120 --~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--------~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                        .+++.+|.++...|++++|+..|++++.+.+        .. .....++.++...|++.+|...+.+.....
T Consensus        92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  165 (373)
T 1hz4_A           92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL  165 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence              3478899999999999999999999998752        22 345578999999999999999998876553

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.07  E-value=3e-09  Score=92.50  Aligned_cols=130  Identities=16%  Similarity=0.097  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----CC
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML-----NPTS---AILYAARAGVYVKLNKPNAAIRDAYVALET-----NP  116 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p  116 (227)
                      .+......+..+..+|+|++|+.+|++++.+     .|++   +..+.++|.+|..+|+|++|+..+++++.+     .|
T Consensus       308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~  387 (490)
T 3n71_A          308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH  387 (490)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC
Confidence            3455667778888999999999999999975     3444   568999999999999999999999999875     46


Q ss_pred             CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCh-HH---HHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          117 DSA---KGYKIRGMARARLGQWEEAANDLHVASKL-----DYDE-EI---GMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       117 ~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~-~~---~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      +++   ..++++|.+|..+|++++|...|++|+.+     .|++ .+   ...+......++.+.++...|.++.
T Consensus       388 ~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          388 NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665   57899999999999999999999999986     5665 22   2366666667777777777776653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.05  E-value=2.2e-09  Score=74.30  Aligned_cols=83  Identities=17%  Similarity=0.018  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          102 NAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       102 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                      +.|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|.+ ..+..++.++...|++.+|...+++...
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999999998 7788999999999999999999998887


Q ss_pred             HHHh
Q 041967          181 EREL  184 (227)
Q Consensus       181 ~~~~  184 (227)
                      ..+.
T Consensus        82 ~~~~   85 (115)
T 2kat_A           82 AAQS   85 (115)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            6653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.03  E-value=2.5e-09  Score=86.25  Aligned_cols=103  Identities=17%  Similarity=0.001  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC--CC-CHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLN-PTS-AILYAARAGVYVKLNKPNAAIRDAYVALETN--PD-SAKGYK  123 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~  123 (227)
                      ... .++.+|..++..++|++|+.+|++++... |.. ..+++++|.++..+|++++|+..|++++.-.  |. .+.+++
T Consensus       134 ~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~  212 (282)
T 4f3v_A          134 EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAW  212 (282)
T ss_dssp             HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHH
T ss_pred             chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHH
Confidence            344 88999999999999999999999887643 211 3589999999999999999999999999654  55 668999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          124 IRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ++|.++..+|+.++|...|++++..+|+.
T Consensus       213 ~~glaL~~lGr~deA~~~l~~a~a~~P~~  241 (282)
T 4f3v_A          213 YLAMARRSQGNESAAVALLEWLQTTHPEP  241 (282)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcH
Confidence            99999999999999999999999999983

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.99  E-value=3.6e-08  Score=85.26  Aligned_cols=128  Identities=14%  Similarity=0.020  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHhCCCCHHH
Q 041967           50 AANMTKLKAVDLISE-----GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN---KPNAAIRDAYVALETNPDSAKG  121 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~  121 (227)
                      ...+++.+|..+...     +++++|+..|.++++..  ++.+++++|.+|...|   ++++|+.+|++++..  .++.+
T Consensus       290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a  365 (490)
T 2xm6_A          290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAA  365 (490)
T ss_dssp             CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHH
Confidence            356778888888887     88999999999988764  5788889999988866   788999999999887  67899


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHH
Q 041967          122 YKIRGMARAR----LGQWEEAANDLHVASKLDYDEEIGMALKKVEPN----ARRIQEHRRKYERLRKER  182 (227)
Q Consensus       122 ~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~  182 (227)
                      ++.+|.+|..    .++++.|+.+|+++...++ ..++..++.++..    .++..+|...|++.....
T Consensus       366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL-SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            9999999999    8999999999999988752 3667788888887    789999999998887766

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.97  E-value=5.8e-08  Score=83.94  Aligned_cols=125  Identities=10%  Similarity=-0.040  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCCCCHHH
Q 041967           50 AANMTKLKAVDLIS----EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----LNKPNAAIRDAYVALETNPDSAKG  121 (227)
Q Consensus        50 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~  121 (227)
                      .+.+++.+|..++.    .+++++|+..|.++++.  .++.+++.+|.+|..    .+++++|+.+|++++..  .++.+
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a  113 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQA  113 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence            45667777777776    67777777777777665  456677777777777    67777777777777654  46667


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh----hhhHHHHHHHHHHHH
Q 041967          122 YKIRGMARAR----LGQWEEAANDLHVASKLDYDEEIGMALKKVEPN----ARRIQEHRRKYERLR  179 (227)
Q Consensus       122 ~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~  179 (227)
                      ++.+|.+|..    .+++++|+.+|+++...+ .......++.++..    .+++.+|...|++..
T Consensus       114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~  178 (490)
T 2xm6_A          114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA  178 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            7777777776    667777777777766653 12445566666554    556666666665554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.94  E-value=1.7e-08  Score=69.20  Aligned_cols=76  Identities=9%  Similarity=-0.088  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLN-------PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYK  123 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  123 (227)
                      +..++.+|..++..++|..|+.-|++|+...       +..+.++..+|.|++++|+++.|+..+++++.++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            5677888999999999999999999988753       234677888888888888888888888888888888888777


Q ss_pred             HHH
Q 041967          124 IRG  126 (227)
Q Consensus       124 ~la  126 (227)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            766

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.90  E-value=1.9e-08  Score=86.54  Aligned_cols=123  Identities=12%  Similarity=0.030  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967           52 NMTKLKAVDLISEG---KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL----NKPNAAIRDAYVALETNPDSAKGYKI  124 (227)
Q Consensus        52 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~  124 (227)
                      .+++.+|..+...|   ++.+|+..|.++....|..+..++++|.+|...    +++++|+.+|+++.   |.++.++++
T Consensus       177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~  253 (452)
T 3e4b_A          177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS  253 (452)
T ss_dssp             THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence            46788888888888   888888888888888888888888888888655    68888888888887   788888888


Q ss_pred             HHHH-H--HHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhh-----hHHHHHHHHHHHH
Q 041967          125 RGMA-R--ARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNAR-----RIQEHRRKYERLR  179 (227)
Q Consensus       125 la~~-~--~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~  179 (227)
                      +|.+ +  ...+++++|+.+|+++...+ .......++.++. .|     ++.+|...|++..
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            8887 4  46788888888888888654 2255667776665 44     7777777776655

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.86  E-value=5.4e-08  Score=81.02  Aligned_cols=136  Identities=18%  Similarity=0.111  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----cHHHHH----HHH--HHHHhCCC
Q 041967           51 ANMTKLKAVDLISEGK---LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK----PNAAIR----DAY--VALETNPD  117 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~----~~~A~~----~~~--~al~~~p~  117 (227)
                      +-.++.+|..++..++   +.+|+.+|++|++++|+++.++..++.||.....    ....+.    .+.  .++..+|.
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            4567778888887655   5899999999999999999999999998864211    111111    122  23366799


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Q 041967          118 SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKN  186 (227)
Q Consensus       118 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  186 (227)
                      .+.+|..++.++...|+++.|+..+++++.++|+...+..++.++...|++++|...|.++....+..+
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            999999999999999999999999999999998766677899999999999999999999988877643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.85  E-value=1.2e-07  Score=77.40  Aligned_cols=129  Identities=14%  Similarity=-0.066  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC----CHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNP--TSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD----SAKGYKIR  125 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l  125 (227)
                      ..++..|.++...|++++|+..+.++|..+|  .+..++...+.+++.+|+++.|...+++....+|+    +-.....+
T Consensus       101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L  180 (310)
T 3mv2_B          101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL  180 (310)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence            4557999999999999999999999999987  78899999999999999999999999999999994    23344444


Q ss_pred             --HHHHHHcC--CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          126 --GMARARLG--QWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       126 --a~~~~~~g--~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                        |.+....|  ++.+|...|+.+....|+. .....+. +....|++.+|...++.+.+.
T Consensus       181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          181 AESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHh
Confidence              44466667  9999999999999999873 2223333 889999999999999876554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.84  E-value=8.6e-08  Score=68.97  Aligned_cols=106  Identities=18%  Similarity=0.103  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 041967           66 KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR----LGQWEEAAND  141 (227)
Q Consensus        66 ~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~  141 (227)
                      ++++|+..|.++.+.....  +.  +|.+|...+.+++|+.+|+++...  .++.+++++|.+|..    .+++..|+.+
T Consensus        10 d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            3445555555555443222  22  455554444455555555555444  344555555555554    4455555555


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHh----hhhHHHHHHHHHHH
Q 041967          142 LHVASKLDYDEEIGMALKKVEPN----ARRIQEHRRKYERL  178 (227)
Q Consensus       142 ~~~a~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~  178 (227)
                      |+++.... .......++.++..    .++..+|...+++.
T Consensus        84 ~~~Aa~~g-~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  123 (138)
T 1klx_A           84 YSKACGLN-DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  123 (138)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHcCC-CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            55554441 11333444444444    44444444444443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.81  E-value=1e-07  Score=68.60  Aligned_cols=90  Identities=16%  Similarity=0.051  Sum_probs=84.0

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 041967           57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----LNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR-  131 (227)
Q Consensus        57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-  131 (227)
                      +|..+...+.+++|+..|+++.+.  .++.+++++|.+|..    .+++.+|+.+|+++...  .++.+++++|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            888888888999999999999987  579999999999999    89999999999999987  689999999999999 


Q ss_pred             ---cCCHHHHHHHHHHHHhcCC
Q 041967          132 ---LGQWEEAANDLHVASKLDY  150 (227)
Q Consensus       132 ---~g~~~~A~~~~~~a~~~~p  150 (227)
                         .++++.|+.+|+++.....
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCcCHHHHHHHHHHHHHCCC
Confidence               9999999999999999864

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.79  E-value=1.2e-07  Score=64.82  Aligned_cols=69  Identities=14%  Similarity=-0.106  Sum_probs=63.2

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967           84 SAILYAARAGVYVKLNKPNAAIRDAYVALETN-------PDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus        84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ++.-.+.+|..++..++|..|+.+|+.|+...       +....++..+|.++..+|+++.|+..+++++.+.|++
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~   79 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            45678899999999999999999999999863       3457899999999999999999999999999999998

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.77  E-value=7.9e-08  Score=82.65  Aligned_cols=90  Identities=14%  Similarity=-0.023  Sum_probs=41.3

Q ss_pred             HHHHHHHHH-H--HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHhCCCCHHHHH
Q 041967           52 NMTKLKAVD-L--ISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-----KPNAAIRDAYVALETNPDSAKGYK  123 (227)
Q Consensus        52 ~~~~~~g~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~  123 (227)
                      .+++.+|.. +  ...+++++|+..|.++++..  ++.+++++|.+|. .|     ++.+|+.+|++++   |.++.+++
T Consensus       249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~  322 (452)
T 3e4b_A          249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADY  322 (452)
T ss_dssp             HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHH
Confidence            344444444 2  23444455555554444322  4444444554444 22     4455555555444   44455555


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHh
Q 041967          124 IRGMARAR----LGQWEEAANDLHVASK  147 (227)
Q Consensus       124 ~la~~~~~----~g~~~~A~~~~~~a~~  147 (227)
                      ++|.+|..    ..++..|+.+|+++..
T Consensus       323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  350 (452)
T 3e4b_A          323 YLGQIYRRGYLGKVYPQKALDHLLTAAR  350 (452)
T ss_dssp             HHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence            55544443    2245555555555444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.77  E-value=5.4e-08  Score=65.36  Aligned_cols=69  Identities=20%  Similarity=0.110  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC
Q 041967           50 AANMTKLKAVDLISEGK---LEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS  118 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  118 (227)
                      +++.+...|..++..++   .++|...+++++..+|+++.+++.+|..++..|+|++|+..+++++..+|..
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            47889999999986665   7999999999999999999999999999999999999999999999999984

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.74  E-value=4.2e-08  Score=84.05  Aligned_cols=96  Identities=8%  Similarity=-0.056  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----CCCCH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIML-----NPTS---AILYAARAGVYVKLNKPNAAIRDAYVALET-----NPDSA  119 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~  119 (227)
                      .....+......|+|++|+.+|++++.+     .|++   +..+.++|.+|..+|+|++|+..+++++.+     .|+++
T Consensus       300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  379 (433)
T 3qww_A          300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL  379 (433)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            3344445555678999999999999974     4444   467999999999999999999999999875     45555


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967          120 ---KGYKIRGMARARLGQWEEAANDLHVASKL  148 (227)
Q Consensus       120 ---~~~~~la~~~~~~g~~~~A~~~~~~a~~~  148 (227)
                         ..++++|.+|..+|++++|+..|++|+.+
T Consensus       380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          380 NVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence               57999999999999999999999999986

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.71  E-value=2.9e-07  Score=78.79  Aligned_cols=98  Identities=13%  Similarity=0.092  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----CCC
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIML-----NPTS---AILYAARAGVYVKLNKPNAAIRDAYVALET-----NPD  117 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~  117 (227)
                      ..........+..+|+|++|+..|+++++.     .|++   ...+.++|.+|..+|+|++|+..+++++.+     .|+
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            455566667788899999999999999975     3444   568999999999999999999999999865     355


Q ss_pred             CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967          118 SA---KGYKIRGMARARLGQWEEAANDLHVASKL  148 (227)
Q Consensus       118 ~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~  148 (227)
                      ++   ..++++|.+|..+|++++|+..|++|+.+
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            55   57899999999999999999999999986

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.69  E-value=5.4e-07  Score=75.92  Aligned_cols=136  Identities=7%  Similarity=-0.066  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-----
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNP-----  116 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----  116 (227)
                      .....++..+|..+...|+|++|+.+|.+++...+..      ..++..+|.++...|+++.|+..++.++...+     
T Consensus        52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  131 (434)
T 4b4t_Q           52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV  131 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence            3456789999999999999999999999999875543      23566788888888999999999999987642     


Q ss_pred             -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          117 -DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYD------E-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       117 -~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~------~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                       ....++.++|.++...|+|.+|...+++++.....      . .+...++.++...|++.+|...+++......
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence             33678999999999999999999999998876221      2 4566889999999999999999987765543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.66  E-value=9.3e-08  Score=83.15  Aligned_cols=106  Identities=8%  Similarity=-0.049  Sum_probs=90.5

Q ss_pred             ccHHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967           43 VTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIML-----NPTS---AILYAARAGVYVKLNKPNAAIRDAYVALET  114 (227)
Q Consensus        43 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  114 (227)
                      +-+.++..+..+.++|.+|..+|+|++|+.+|+++|..     .|++   +..+.++|.+|..+|++++|+..|++|+.+
T Consensus       343 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          343 FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            33455678899999999999999999999999999974     3444   568999999999999999999999999864


Q ss_pred             -----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967          115 -----NPDSA---KGYKIRGMARARLGQWEEAANDLHVASKL  148 (227)
Q Consensus       115 -----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~  148 (227)
                           .|+++   .....++.++..++.+++|...|.++.+.
T Consensus       423 ~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          423 LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 57776   46678999999999999999999987543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.64  E-value=8.2e-07  Score=84.69  Aligned_cols=119  Identities=9%  Similarity=-0.025  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-----------
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD-----------  117 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----------  117 (227)
                      +....|+..|..+...|++++|+..|.++     +++..|.+.|.++.+.|++++|+++|.++++..+.           
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence            35678999999999999999999999876     78899999999999999999999999888766533           


Q ss_pred             ----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          118 ----------------SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       118 ----------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                                      +...++.+|..+...|+|++|..+|.++       ..|..++.++.++|++.+|...++++.
T Consensus      1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A         1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred             HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence                            2235666777777777777777777775       245566677777777777777776654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.63  E-value=1.5e-07  Score=75.65  Aligned_cols=85  Identities=14%  Similarity=0.030  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHH
Q 041967           67 LEDAIGQLTEAIMLNPT--SAILYAARAGVYVKL-----NKPNAAIRDAYVALETNPDS-AKGYKIRGMARAR-LGQWEE  137 (227)
Q Consensus        67 ~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~  137 (227)
                      ...|...++++++++|+  +..+|..+|..|...     |+.++|..+|++++.++|+. ...++.+|..++. .|+++.
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            48899999999999999  677999999999994     99999999999999999975 9999999999988 499999


Q ss_pred             HHHHHHHHHhcCCC
Q 041967          138 AANDLHVASKLDYD  151 (227)
Q Consensus       138 A~~~~~~a~~~~p~  151 (227)
                      |...+++++..+|.
T Consensus       259 a~~~L~kAL~a~p~  272 (301)
T 3u64_A          259 FDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHcCCCC
Confidence            99999999999887

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.62  E-value=1e-06  Score=71.91  Aligned_cols=132  Identities=9%  Similarity=-0.070  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHhCCCCHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT------SAILYAARAGVYVKLN--KPNAAIRDAYVALETNPDSAKG  121 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~  121 (227)
                      ..+.+...+.++++.|+.+.|.+.+++....+|+      ....+..-|++.+..|  ++..|...|+++....|++...
T Consensus       135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~  214 (310)
T 3mv2_B          135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQ  214 (310)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccH
Confidence            5677788889999999999999999999999983      2333433455576667  9999999999999888874332


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          122 YKIRGMARARLGQWEEAANDLHVASKL----------DYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       122 ~~~la~~~~~~g~~~~A~~~~~~a~~~----------~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ...+. ++..+|++++|...++.+.+.          +|++ ....++..+....|+  ++.+.+.++.+..+.
T Consensus       215 ~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~  285 (310)
T 3mv2_B          215 LGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE  285 (310)
T ss_dssp             HHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred             HHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence            33333 899999999999999988876          4777 555566666666776  555555666555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.61  E-value=7.4e-07  Score=62.76  Aligned_cols=90  Identities=11%  Similarity=-0.027  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHH
Q 041967           65 GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNA---AIRDAYVALETN-P-DSAKGYKIRGMARARLGQWEEAA  139 (227)
Q Consensus        65 ~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~  139 (227)
                      .....+...|.+.+..++.+..+.+++|+++.+..+...   +|..++..+..+ | ...+.+|.+|..++++|+|..|.
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            445667778888888888899999999999999887666   999999999887 5 45689999999999999999999


Q ss_pred             HHHHHHHhcCCChHH
Q 041967          140 NDLHVASKLDYDEEI  154 (227)
Q Consensus       140 ~~~~~a~~~~p~~~~  154 (227)
                      .++..++++.|+|.-
T Consensus        95 ~~~~~lL~~eP~n~Q  109 (126)
T 1nzn_A           95 KYVRGLLQTEPQNNQ  109 (126)
T ss_dssp             HHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHhCCCCHH
Confidence            999999999999833

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.60  E-value=2.7e-07  Score=67.29  Aligned_cols=79  Identities=14%  Similarity=0.058  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967           50 AANMTKLKAVDLISEG---KLEDAIGQLTEAIMLN-P-TSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI  124 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  124 (227)
                      ..++.|+.|.++.+.+   +.++++.+++..++.+ | ...+++|++|..+++.|+|.+|+.+++.+++++|+|..+...
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            3688999999999988   6779999999999998 7 567899999999999999999999999999999999987766


Q ss_pred             HHHH
Q 041967          125 RGMA  128 (227)
Q Consensus       125 la~~  128 (227)
                      ...+
T Consensus       111 k~~i  114 (152)
T 1pc2_A          111 ERLI  114 (152)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.58  E-value=2e-07  Score=78.52  Aligned_cols=130  Identities=9%  Similarity=0.020  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA-----------------ILYAARAGVYVKLNKPNAAIRDAYVALET  114 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~g~~~~~~~~~~~A~~~~~~al~~  114 (227)
                      ......|..++..|+|++|+..|.++++..|...                 .++.++|.+|...|++++|+..+.+++..
T Consensus         5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~   84 (434)
T 4b4t_Q            5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY   84 (434)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4456778889999999999999999999888742                 46889999999999999999999999987


Q ss_pred             CCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          115 NPDSAK------GYKIRGMARARLGQWEEAANDLHVASKLDYD------E-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       115 ~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~------~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      .+....      +...+|.++...|+++.|+..+.+++.+.+.      - .+...++.++...|++.+|...++.+...
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q           85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence            665432      4556788888999999999999999876432      1 35668999999999999999999777654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.39  E-value=2.5e-06  Score=62.70  Aligned_cols=111  Identities=14%  Similarity=0.024  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC---CC
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLN---PTS------AILYAARAGVYVKLNKPNAAIRDAYVALETNP---DS  118 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~  118 (227)
                      ...++.....++..+.|+.|+-....++.+.   |+.      ..+++.+|.+++..++|..|...|+++|.+.-   .+
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3567888899999999999999999977654   331      34788899999999999999999999876531   11


Q ss_pred             ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 041967          119 ----------------------AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKV  161 (227)
Q Consensus       119 ----------------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~  161 (227)
                                            .+..|.++.||..++++.+|+..++......-+..+...|+++
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakL  164 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANL  164 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHH
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHH
Confidence                                  2688999999999999999999887653333333555555554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.37  E-value=1.4e-06  Score=74.43  Aligned_cols=111  Identities=18%  Similarity=0.123  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHH--------
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYK--------  123 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------  123 (227)
                      .+|...|..++..|.|++|+.+|.++        ..|..+|.|+.++|++++|+..++++     .++..|-        
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD  189 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence            36777777777777777777777765        34666777777777777777777776     2333333        


Q ss_pred             ----------------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH--hhhhHHHHHHHH
Q 041967          124 ----------------------IRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEP--NARRIQEHRRKY  175 (227)
Q Consensus       124 ----------------------~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~--~~~~~~~a~~~~  175 (227)
                                            .+..+|...|.+++|+..+++++.+++.. .++..++..+.  +.++..++.+.|
T Consensus       190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~  266 (449)
T 1b89_A          190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF  266 (449)
T ss_dssp             TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence                                  34456777777777777777777777766 66666655553  355555555555

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.32  E-value=1.1e-05  Score=77.25  Aligned_cols=120  Identities=17%  Similarity=0.041  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC---------------
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP---------------  116 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---------------  116 (227)
                      ..+...|..++..|+|++|+.+|.++        ..|..+|.++.++|++++|+..++++....+               
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence            46778999999999999999999996        4788999999999999999999998854433               


Q ss_pred             ----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH--HhhhhHHHHHHHHHHHH
Q 041967          117 ----------DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVE--PNARRIQEHRRKYERLR  179 (227)
Q Consensus       117 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~--~~~~~~~~a~~~~~~~~  179 (227)
                                .+++.+..++..|...|.+++|+..|++++.++|.+ ..+..++.++  .+.++..++.+.|....
T Consensus      1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A         1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred             HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence                      134456677888999999999999999999999887 6665555554  34566666666664433

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.31  E-value=6.2e-06  Score=68.66  Aligned_cols=79  Identities=15%  Similarity=0.076  Sum_probs=71.7

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 041967           79 MLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMAL  158 (227)
Q Consensus        79 ~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l  158 (227)
                      ..+|.++.++..++..+...|+++.|+..+++++.++|. ..+|..+|.++...|++++|+..|.+|+.++|........
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~  349 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWI  349 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHH
Confidence            567899999999999999999999999999999999975 6788999999999999999999999999999998654443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.22  E-value=2.4e-05  Score=70.64  Aligned_cols=135  Identities=8%  Similarity=-0.070  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML-NPTSAILYAARAGVYVKLN-KPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      ....|...+......|..+.|...|.+|+.. .+.....|...|....+.+ +++.|...|+.+++..|+.+..|..++.
T Consensus       433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~  512 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD  512 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            3457888888888889999999999999987 4445677877888877775 4999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC---h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          128 ARARLGQWEEAANDLHVASKLDYD---E-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~---~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .....|+.+.|...|++++...|+   . .+|..........|+...+..-.+++....+.
T Consensus       513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred             HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999884   3 56777778888889888888777777766554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.19  E-value=3.7e-05  Score=65.59  Aligned_cols=92  Identities=12%  Similarity=0.011  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------------------CHHHHHHHHHHHHHcCCcH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT---------------------------SAILYAARAGVYVKLNKPN  102 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------------------------~~~~~~~~g~~~~~~~~~~  102 (227)
                      .+..|..+|.++.+.|+|++|++.|.++.  +|.                           ++.-...++.+|.+.|.++
T Consensus       147 ~a~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~e  224 (449)
T 1b89_A          147 NVSNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFE  224 (449)
T ss_dssp             HTTCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HhhhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHH
Confidence            34577889999999999999999999982  221                           1122223446788899999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 041967          103 AAIRDAYVALETNPDSAKGYKIRGMARARLG--QWEEAANDLH  143 (227)
Q Consensus       103 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~  143 (227)
                      +|+..++.++.+++.+...+..+|.+|.+-.  +..+.++.|.
T Consensus       225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~  267 (449)
T 1b89_A          225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW  267 (449)
T ss_dssp             HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999988654  3444444444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.19  E-value=4.9e-05  Score=68.61  Aligned_cols=114  Identities=9%  Similarity=-0.069  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041967           68 EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAI-RDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVAS  146 (227)
Q Consensus        68 ~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  146 (227)
                      ......|++++...|.++.+|+..+..+...|+...|+ ..|++|+...|.+...|+.++......|+++.|...|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            44567899999999999999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             hcC-----------CC-----------h-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          147 KLD-----------YD-----------E-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       147 ~~~-----------p~-----------~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      ...           |.           . .+|........+.|+...|+.-+.++.+.
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            752           53           2 35777777778888999999988887765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.11  E-value=6.1e-06  Score=70.55  Aligned_cols=91  Identities=11%  Similarity=0.006  Sum_probs=73.4

Q ss_pred             CccccHHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 041967           40 SVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIML-----NPTS---AILYAARAGVYVKLNKPNAAIRDAYVA  111 (227)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~a  111 (227)
                      ...+-+.++..+..+.++|.+|..+|+|++|+.++++++..     .|++   +..++++|.+|..+|++++|+..+++|
T Consensus       318 ~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          318 SERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             SCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            34455667788999999999999999999999999999964     3444   568999999999999999999999999


Q ss_pred             HHh-----CCCCHH---HHHHHHHHHH
Q 041967          112 LET-----NPDSAK---GYKIRGMARA  130 (227)
Q Consensus       112 l~~-----~p~~~~---~~~~la~~~~  130 (227)
                      +.+     .|+++.   .+.+++.+..
T Consensus       398 l~i~~~~lG~~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          398 FDIMRVTHGREHSLIEDLILLLEECDA  424 (429)
T ss_dssp             HHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            865     577764   4444555544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.08  E-value=9.5e-06  Score=69.42  Aligned_cols=79  Identities=14%  Similarity=0.013  Sum_probs=66.7

Q ss_pred             ccHHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 041967           43 VTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIML-----NPTS---AILYAARAGVYVKLNKPNAAIRDAYVALET  114 (227)
Q Consensus        43 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  114 (227)
                      +-+.++..+..+.++|.+|..+|+|++|+.+|+++|..     .|++   +..++++|.+|..+|++++|+..|++|+.+
T Consensus       332 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          332 FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            34456678899999999999999999999999999974     3444   568999999999999999999999999875


Q ss_pred             -----CCCCHHH
Q 041967          115 -----NPDSAKG  121 (227)
Q Consensus       115 -----~p~~~~~  121 (227)
                           .|+++..
T Consensus       412 ~~~~lG~~Hp~~  423 (433)
T 3qww_A          412 MEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHTCTTCHHH
T ss_pred             HHHHcCCCChHH
Confidence                 4666643

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.08  E-value=6.5e-05  Score=53.06  Aligned_cols=71  Identities=7%  Similarity=-0.024  Sum_probs=62.9

Q ss_pred             CHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967           84 SAILYAARAGVYVKLNK---PNAAIRDAYVALETNPDS-AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI  154 (227)
Q Consensus        84 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~  154 (227)
                      ++.+.+++|+++.+..+   ..++|..++..++.+|.. .+.+|.+|..++++|+|..|.++...++++.|+|.-
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q  113 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  113 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence            67889999999999875   457999999999998854 689999999999999999999999999999999833

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.04  E-value=0.00013  Score=58.57  Aligned_cols=105  Identities=10%  Similarity=-0.047  Sum_probs=85.7

Q ss_pred             hCCCCHHHHHHHHHHHHH-----cCC------cHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHH
Q 041967           80 LNPTSAILYAARAGVYVK-----LNK------PNAAIRDAYVALETNPD--SAKGYKIRGMARARL-----GQWEEAAND  141 (227)
Q Consensus        80 ~~p~~~~~~~~~g~~~~~-----~~~------~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~  141 (227)
                      .+|+++.+++..|.....     .|.      ...|...++++++++|+  +..+|..+|.+|...     |+.+.|.++
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            456677777777776644     133      46799999999999999  566999999999996     999999999


Q ss_pred             HHHHHhcCCC-h-HHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHh
Q 041967          142 LHVASKLDYD-E-EIGMALKKVEPN-ARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       142 ~~~a~~~~p~-~-~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~  184 (227)
                      |++++.++|+ + .+...++..+.. .++...+...+++.....+.
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            9999999996 4 777788887766 58899999999888876554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.99  E-value=4.3e-05  Score=53.69  Aligned_cols=79  Identities=15%  Similarity=0.050  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLED---AIGQLTEAIMLN-P-TSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI  124 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  124 (227)
                      ..++.|..|..+.+..+...   +|.++...+..+ | ..-.++|.+|..+++.|+|.+|+.+++.+++.+|+|..+...
T Consensus        34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L  113 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL  113 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            35788999999999988776   999999988876 5 456799999999999999999999999999999999987766


Q ss_pred             HHHH
Q 041967          125 RGMA  128 (227)
Q Consensus       125 la~~  128 (227)
                      ...+
T Consensus       114 k~~i  117 (126)
T 1nzn_A          114 ERLI  117 (126)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.99  E-value=0.0004  Score=49.66  Aligned_cols=72  Identities=7%  Similarity=-0.021  Sum_probs=64.0

Q ss_pred             CCHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967           83 TSAILYAARAGVYVKLNK---PNAAIRDAYVALETNPDS-AKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEI  154 (227)
Q Consensus        83 ~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~  154 (227)
                      -++...|++|+++.+..+   ..+++..++..+...|.. .+.+|.+|..++++|+|..|.++...+++++|+|.-
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            468899999999999876   457999999999998854 579999999999999999999999999999999833

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.94  E-value=0.00016  Score=52.18  Aligned_cols=102  Identities=15%  Similarity=-0.000  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Q 041967           50 AANMTKLKAVDLISEGKL------EDAIGQLTEAIMLNPTS--------AILYAARAGVYVKLNKPNAAIRDAYVALETN  115 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  115 (227)
                      +.+.|+......-+.|+.      +.-++.|++|+..-|-.        ...|...|.. ...++.++|.+.|+.++.+.
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh
Confidence            578888888888888998      89999999999876642        4466667655 56799999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          116 PDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       116 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ..+.++|...|.-..+.|+...|.+.+.+++.+.|.+
T Consensus        91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            8999999999999999999999999999999999987

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.71  E-value=0.00042  Score=48.90  Aligned_cols=79  Identities=14%  Similarity=-0.010  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKL---EDAIGQLTEAIMLNPT-SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      .+.+.|+.|..+.+..+.   ..++.++...+..+|. .-.+++.+|..++++|+|..|+.+++.+++..|+|..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            357889999999998765   5799999999998884 467999999999999999999999999999999999876655


Q ss_pred             HHH
Q 041967          126 GMA  128 (227)
Q Consensus       126 a~~  128 (227)
                      ..+
T Consensus       119 ~~I  121 (134)
T 3o48_A          119 SMV  121 (134)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.69  E-value=0.0014  Score=56.94  Aligned_cols=125  Identities=10%  Similarity=-0.049  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------------------------------
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGV------------------------------------   94 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~------------------------------------   94 (227)
                      ...|+..+..+...|+.+.|...|.+|+.. |.+...+...+..                                    
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            577888899999999999999999999999 9875544433332                                    


Q ss_pred             ----HHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhH
Q 041967           95 ----YVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG-QWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRI  168 (227)
Q Consensus        95 ----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~  168 (227)
                          +.+.++.+.|...|+++ ...+.....|...|.+....+ +++.|...|+.+++..|++ ..+..........|+.
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~  370 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE  370 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence                22356678888999998 444445677777787777666 5999999999999988886 5555555566677777


Q ss_pred             HHHHHHHHH
Q 041967          169 QEHRRKYER  177 (227)
Q Consensus       169 ~~a~~~~~~  177 (227)
                      ..++.-|++
T Consensus       371 ~~aR~l~er  379 (493)
T 2uy1_A          371 ENARALFKR  379 (493)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777755554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.68  E-value=0.001  Score=47.58  Aligned_cols=79  Identities=14%  Similarity=-0.010  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKL---EDAIGQLTEAIMLNPT-SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIR  125 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  125 (227)
                      ..+..|+.|..+.+..+.   ..++.+++..+...|. .-.++|.+|..++++|+|.+|..+++.+++..|+|..+....
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            467889999999998865   5799999999998885 456899999999999999999999999999999998776654


Q ss_pred             HHH
Q 041967          126 GMA  128 (227)
Q Consensus       126 a~~  128 (227)
                      ..+
T Consensus       118 ~~I  120 (144)
T 1y8m_A          118 SMV  120 (144)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.62  E-value=0.0032  Score=54.60  Aligned_cols=125  Identities=11%  Similarity=-0.058  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-KPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ...|...+......++.+.|...|.+| ...+.....|...|...+..+ +++.|...|+.+++..|+.+..|..++...
T Consensus       286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e  364 (493)
T 2uy1_A          286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            466777777777788899999999999 433346677877787777766 699999999999999999999888889989


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                      ...|+.+.|...|+++.    .. ..|..........|+...++.-+++...
T Consensus       365 ~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          365 LRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999982    33 6677777777777887777776665554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.52  E-value=0.008  Score=50.44  Aligned_cols=114  Identities=13%  Similarity=0.066  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCcHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----------------------AILYAARAGVYVKLNKPNAAIR  106 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~g~~~~~~~~~~~A~~  106 (227)
                      ...+.+...|......|+...|...+.+|+.+....                      ..+...++..+...|++..++.
T Consensus       113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~  192 (388)
T 2ff4_A          113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA  192 (388)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            456777888888888999999999999999874321                      1344466777888999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCChHHHHHHHHHH
Q 041967          107 DAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASK-------LDYDEEIGMALKKVE  162 (227)
Q Consensus       107 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-------~~p~~~~~~~l~~~~  162 (227)
                      .+..++..+|-+..+|..+-.++...|+..+|+..|+++-+       ++|..........+.
T Consensus       193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il  255 (388)
T 2ff4_A          193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL  255 (388)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987754       466655444444443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.22  E-value=0.0018  Score=47.55  Aligned_cols=79  Identities=14%  Similarity=0.055  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CC-------------------CHHHHHHHHHHHHHcCCcHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLN------PT-------------------SAILYAARAGVYVKLNKPNAA  104 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~-------------------~~~~~~~~g~~~~~~~~~~~A  104 (227)
                      .++.+...|+.+|..++|..|...|.++|...      +.                   +.+..|.++.||..+++++.|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            56789999999999999999999999998531      10                   126889999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967          105 IRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus       105 ~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      +..++.+- .....++.-..+|.+|
T Consensus       142 i~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             HHHHhcCC-chhcCHHHHHHHHHHh
Confidence            99986542 2245677777777765

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.06  E-value=0.047  Score=47.36  Aligned_cols=95  Identities=17%  Similarity=0.099  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHH
Q 041967           86 ILYAARAGVYVKLNKPNAAIRDAYVALETN-PDSAKGYKIRGMARARLGQWEEAANDLHVASKL--DYDEEIGMALKKVE  162 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~l~~~~  162 (227)
                      ..|..+...|.+.|++++|...|+...... .-+...|..+-..|.+.|+.++|...|......  .|+...+..+-..+
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~  185 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS  185 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            344455555556666666666666555432 224445555555666666666666666655543  33334455555555


Q ss_pred             HhhhhHHHHHHHHHHHHH
Q 041967          163 PNARRIQEHRRKYERLRK  180 (227)
Q Consensus       163 ~~~~~~~~a~~~~~~~~~  180 (227)
                      .+.|+.++|..-++++..
T Consensus       186 ~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          186 MDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             hhCCCHHHHHHHHHHHHH
Confidence            666666666666655543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.04  E-value=0.033  Score=48.32  Aligned_cols=107  Identities=8%  Similarity=-0.020  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-CCHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIML--NPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP-DSAKGYKIRGM  127 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~  127 (227)
                      ...|..+-..+.+.|++++|..+|.+....  .| +...|..+-..|.+.|+.++|...|+......- -+...|..+-.
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~  183 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK  183 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            346777888999999999999999998775  34 577788888999999999999999999887642 35667888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhc--CCChHHHHHH
Q 041967          128 ARARLGQWEEAANDLHVASKL--DYDEEIGMAL  158 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~l  158 (227)
                      ++.+.|+.++|...|++.-..  .|+......+
T Consensus       184 ~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l  216 (501)
T 4g26_A          184 VSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI  216 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred             HHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence            999999999999999987654  4554444444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.97  E-value=0.0086  Score=43.22  Aligned_cols=103  Identities=13%  Similarity=0.071  Sum_probs=82.7

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCc------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967           78 IMLNPTSAILYAARAGVYVKLNKP------NAAIRDAYVALETNPDS--------AKGYKIRGMARARLGQWEEAANDLH  143 (227)
Q Consensus        78 l~~~p~~~~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~  143 (227)
                      +-..|++++.|.......-+.|+.      ++-+..|++|+..-|-.        ...|.++|.. ..+++.++|...|+
T Consensus         6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~   84 (161)
T 4h7y_A            6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ   84 (161)
T ss_dssp             ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred             eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence            346899999999999999888999      89999999999877642        2356666754 67799999999999


Q ss_pred             HHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          144 VASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       144 ~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      .|+.+.... -+|...+....+.|+...|++-+.+...-
T Consensus        85 ~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           85 MARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             HHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence            999886655 67888889999999999999988777653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.82  E-value=0.023  Score=45.01  Aligned_cols=64  Identities=23%  Similarity=0.248  Sum_probs=59.5

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHH
Q 041967           59 VDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGY  122 (227)
Q Consensus        59 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  122 (227)
                      ..+++.|+.++|+......++.+|.++.....+-..++-.|++++|...++.+.+++|.....-
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a   68 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   68 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            4578899999999999999999999999999999999999999999999999999999987643

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.61  E-value=0.11  Score=38.40  Aligned_cols=95  Identities=17%  Similarity=0.079  Sum_probs=74.3

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH--h---------------CCC
Q 041967           55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE--T---------------NPD  117 (227)
Q Consensus        55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~---------------~p~  117 (227)
                      ...+..++-.|.|..|+-.+..     -+...+.+-.+.||.+.+++.+|+..++..++  .               +|.
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~  111 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG  111 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred             hhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence            4466778888999988876632     23567777789999999999999999999983  2               233


Q ss_pred             CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHH
Q 041967          118 SAK-GYKIRGMARARLGQWEEAANDLHVASKLDYDEEI  154 (227)
Q Consensus       118 ~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~  154 (227)
                      +.+ .+..+|.++...|+.++|+.+|.......|-...
T Consensus       112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~  149 (242)
T 3kae_A          112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP  149 (242)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence            443 4555899999999999999999999998887633

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.011  Score=53.74  Aligned_cols=81  Identities=16%  Similarity=0.126  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           66 KLEDAIGQLTEAIML--------NPTS----------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        66 ~~~~A~~~~~~al~~--------~p~~----------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      +--+|+..+.++++.        .+.+          ...+..-+..+...|+++-|+...++++..-|..-..|+.|+.
T Consensus       300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~  379 (754)
T 4gns_B          300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLAR  379 (754)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence            345677777777642        2222          2355566788888999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q 041967          128 ARARLGQWEEAANDLHVAS  146 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~  146 (227)
                      ||..+|+|+.|+-.+..+.
T Consensus       380 vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          380 CHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHhccHHHHHHHHhcCC
Confidence            9999999999998888773

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.26  E-value=0.039  Score=47.84  Aligned_cols=81  Identities=10%  Similarity=-0.103  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      ...+..+|....-...+..|..+|.+|+.+.|++..++..+|.+....|+.-.|+-+|-+++.....++.+.-++...+.
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999888888988888888776


Q ss_pred             H
Q 041967          131 R  131 (227)
Q Consensus       131 ~  131 (227)
                      .
T Consensus       232 ~  232 (497)
T 1ya0_A          232 K  232 (497)
T ss_dssp             H
T ss_pred             H
Confidence            5

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.20  E-value=0.025  Score=51.44  Aligned_cols=60  Identities=17%  Similarity=0.120  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVA  111 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a  111 (227)
                      ..+...+..++.+|+|+.|+.+.++|+...|.+-..|+.++.||..+|+|+.|+-.++.+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            456677888899999999999999999999999999999999999999999999887765

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.04  E-value=0.059  Score=46.67  Aligned_cols=78  Identities=10%  Similarity=0.002  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 041967           86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEP  163 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~  163 (227)
                      ..+..+|........+..|..+|.+|+.+.|.+...|..+|.+....|+.-+|+-+|.+++....-. .+..++.....
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            4677899999999999999999999999999999999999999999999999999999999875444 55556655554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.64  E-value=0.14  Score=40.55  Aligned_cols=59  Identities=17%  Similarity=0.024  Sum_probs=56.2

Q ss_pred             HHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967           94 VYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus        94 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ..++.|....|+..+...|+.+|.+......+..+++-.|+++.|.+.++.+.+++|..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            45678999999999999999999999999999999999999999999999999999987

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.38  E-value=0.29  Score=41.05  Aligned_cols=94  Identities=11%  Similarity=-0.103  Sum_probs=74.7

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC---CCCH----HHH
Q 041967           56 LKAVDLISEGKLEDAIGQLTEAIMLNPT------SAILYAARAGVYVKLNKPNAAIRDAYVALETN---PDSA----KGY  122 (227)
Q Consensus        56 ~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~----~~~  122 (227)
                      .+|..++..|+|.+|+..+.+.+.....      -...+.....+|...+++.++...+..+....   +..|    ...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            6899999999999999999998874222      14567778899999999999999999886553   2333    344


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHhcC
Q 041967          123 KIRGMARA-RLGQWEEAANDLHVASKLD  149 (227)
Q Consensus       123 ~~la~~~~-~~g~~~~A~~~~~~a~~~~  149 (227)
                      ..-|..+. ..++|..|..+|-.++.-.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            55688888 8999999999999987543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.73  E-value=0.18  Score=42.10  Aligned_cols=63  Identities=16%  Similarity=0.135  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE  113 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  113 (227)
                      ..+....+..++..|++.+|+..+..++..+|.+-.++..+-.+++..|+..+|+..|+++..
T Consensus       171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455667788899999999999999999999999999999999999999999999999988754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.71  E-value=0.11  Score=44.11  Aligned_cols=99  Identities=11%  Similarity=-0.095  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC---CCCH---HHHH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPT---SAILYAARAGVYVKLNKPNAAIRDAYVALETN---PDSA---KGYK  123 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~---~~~~  123 (227)
                      .+..+|..++..|+++.|.+.|.++......   -...+.....++...+++..+...+.++-.+-   +++.   ....
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            5678999999999999999999999876433   35788888899999999999999999986542   2221   3445


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967          124 IRGMARARLGQWEEAANDLHVASKLDYD  151 (227)
Q Consensus       124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~  151 (227)
                      ..|..+...++|..|...|..++.....
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence            5688888999999999999888766544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.18  E-value=0.91  Score=40.80  Aligned_cols=61  Identities=15%  Similarity=0.116  Sum_probs=36.4

Q ss_pred             CCHHHHHHHHHHHHHcCCcHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 041967           83 TSAILYAARAGVYVKLNKPNAAIRDAYVA--------LETNPDSAKGYKIRGMARARLGQWEEAANDLH  143 (227)
Q Consensus        83 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a--------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  143 (227)
                      ++...|..+|..+.+.++++.|+.+|.++        +.....+.+.+..++......|++..|...|.
T Consensus       679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~  747 (814)
T 3mkq_A          679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYW  747 (814)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            45677777777777777777777777764        11123344444555555555555555554433

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.14  E-value=1.3  Score=37.61  Aligned_cols=99  Identities=17%  Similarity=0.083  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC-C----HHHHHHHHHHHHHcCCcHHHHHHHHHHHH---hCCCCH-
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML-NPT-S----AILYAARAGVYVKLNKPNAAIRDAYVALE---TNPDSA-  119 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~-~----~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~-  119 (227)
                      .+.....++..+...|+|.+|...+.....- ... +    ..++......++..+++.+|...+.++-.   ..+..+ 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            4566678899999999999999999987642 211 1    46788889999999999999999988632   234443 


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 041967          120 ---KGYKIRGMARARLGQWEEAANDLHVASKL  148 (227)
Q Consensus       120 ---~~~~~la~~~~~~g~~~~A~~~~~~a~~~  148 (227)
                         ..+...|..+...++|.+|..+|..++..
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               36667899999999999999999988765

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.47  E-value=1.7  Score=32.08  Aligned_cols=49  Identities=10%  Similarity=0.011  Sum_probs=39.5

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967           59 VDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVAL  112 (227)
Q Consensus        59 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  112 (227)
                      ...+..|+++.|.+.....     ++...|..+|...+..|+++-|..+|.++-
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            4556779999998887654     567889999999999999999998887753

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.33  E-value=1.8  Score=32.00  Aligned_cols=118  Identities=14%  Similarity=0.025  Sum_probs=86.3

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 041967           58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEE  137 (227)
Q Consensus        58 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  137 (227)
                      -...++-.+|+.++-+-.-   +.|..+.+...++.+++..|.+..++-.+     ..-+...+.+..+.||..+.+|..
T Consensus         9 I~Ks~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klKdYkk   80 (242)
T 3kae_A            9 ICKSIRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKKDYKK   80 (242)
T ss_dssp             HHHHHHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHH
Confidence            3455667888887654322   34445577777899999999999987665     233456788889999999999999


Q ss_pred             HHHHHHHHH--hcC---------------CCh-HH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          138 AANDLHVAS--KLD---------------YDE-EI-GMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       138 A~~~~~~a~--~~~---------------p~~-~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      |+.++.+.+  +++               |.+ +- ...++.++.+.|..+++...+....+...
T Consensus        81 A~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A           81 AIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             HHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence            999999999  333               344 33 34788999999999999999977765544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=93.01  E-value=2.2  Score=40.27  Aligned_cols=99  Identities=10%  Similarity=-0.090  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CCCHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIM-----LNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETN-PDSAKGYK  123 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  123 (227)
                      .-..+..+-..+.+.|+.++|..+|.+...     ..| +...|..+-..|++.|++++|...|+...... .-+...|.
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn  204 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            345688888999999999999999976442     344 57788889999999999999999999887654 33566777


Q ss_pred             HHHHHHHHcCC-HHHHHHHHHHHHhcC
Q 041967          124 IRGMARARLGQ-WEEAANDLHVASKLD  149 (227)
Q Consensus       124 ~la~~~~~~g~-~~~A~~~~~~a~~~~  149 (227)
                      .+-.++.+.|+ .++|...|......+
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            78888999997 467877777666543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.72  E-value=1.2  Score=42.40  Aligned_cols=94  Identities=13%  Similarity=0.049  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIML-----------------------NPTSAILYAARAGVYVKLNKPNAAIRDAY  109 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-----------------------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~  109 (227)
                      .-|.+|.+++..|++++|..+|.++-..                       ....+.+|......+-+.+.++.+++...
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3488999999999999999999887321                       01124566777778888899999999999


Q ss_pred             HHHHhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041967          110 VALETNPD-SA----KGYKIRGMARARLGQWEEAANDLHVAS  146 (227)
Q Consensus       110 ~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~a~  146 (227)
                      .||..-+. ..    ..|.++-..+..+|+|++|...+...-
T Consensus       924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p  965 (1139)
T 4fhn_B          924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS  965 (1139)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred             HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence            99987643 32    267788889999999999988776544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.70  E-value=4.8  Score=36.02  Aligned_cols=82  Identities=15%  Similarity=-0.066  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      ...|...|..+++.++++.|+.+|.++-.        +-.+..++...|+.+......+.+.... ...    ....++.
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~~-~~~----~A~~~~~  747 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETTG-KFN----LAFNAYW  747 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHH----HHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-chH----HHHHHHH
Confidence            46789999999999999999999998632        2223444555777766555555555432 221    1233566


Q ss_pred             HcCCHHHHHHHHHHH
Q 041967          131 RLGQWEEAANDLHVA  145 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a  145 (227)
                      ..|++++|++.|.++
T Consensus       748 ~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          748 IAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHTCHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHc
Confidence            788888888877654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.36  E-value=5.7  Score=33.19  Aligned_cols=130  Identities=10%  Similarity=0.020  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------CCCC--------------------HH-
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIML----------------------NPTS--------------------AI-   86 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------------~p~~--------------------~~-   86 (227)
                      .-.+.+.+|..+...|++++-..++......                      -|++                    .. 
T Consensus        18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl   97 (394)
T 3txn_A           18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467888999999999988877776554311                      1221                    11 


Q ss_pred             ---HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC---C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CChH
Q 041967           87 ---LYAARAGVYVKLNKPNAAIRDAYVALETNPD---S---AKGYKIRGMARARLGQWEEAANDLHVASKLD----YDEE  153 (227)
Q Consensus        87 ---~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----p~~~  153 (227)
                         .-..+|..|+..|+|.+|+..+.+.+.--..   .   .+++..-..+|..++++..+...|.++....    +...
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~  177 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK  177 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence               2237899999999999999999888764221   1   3577778899999999999999998886553    3221


Q ss_pred             H----HHHHHHHHH-hhhhHHHHHHHHHHHH
Q 041967          154 I----GMALKKVEP-NARRIQEHRRKYERLR  179 (227)
Q Consensus       154 ~----~~~l~~~~~-~~~~~~~a~~~~~~~~  179 (227)
                      +    ...-|..+. ..++|..|...|-...
T Consensus       178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          178 VQGALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            2    224455556 6888888888885554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.13  E-value=1.4  Score=32.52  Aligned_cols=82  Identities=7%  Similarity=-0.052  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ....|..+|...+..|+++-|..+|.++-.        +..+...|.-.|+.++-....+.+...+.     +.....++
T Consensus        33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~~~   99 (177)
T 3mkq_B           33 DSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQNIAQTRED-----FGSMLLNT   99 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHH
Confidence            456899999999999999999999998632        22244556667887776655555554431     22334567


Q ss_pred             HHcCCHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHV  144 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~  144 (227)
                      ..+|++++++..|.+
T Consensus       100 l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B          100 FYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHH
Confidence            788999988877654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.25  E-value=4.1  Score=38.90  Aligned_cols=116  Identities=13%  Similarity=-0.018  Sum_probs=80.9

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH---hC------------------
Q 041967           57 KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALE---TN------------------  115 (227)
Q Consensus        57 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~------------------  115 (227)
                      +...++..+.++-+..    .+...|.++...|-+|.+++..|++++|..+|+++-.   .+                  
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence            3445566666665544    3456778888889999999999999999999988621   11                  


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-H-----HHHHHHHHHHhhhhHHHHHHHHH
Q 041967          116 --PDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-E-----IGMALKKVEPNARRIQEHRRKYE  176 (227)
Q Consensus       116 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~-----~~~~l~~~~~~~~~~~~a~~~~~  176 (227)
                        ...+..|+....++...+.++.+++..+.|+...+.+ .     .|..+=......+++++|...+-
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence              1123466677788889999999999999999876543 2     23344445566777777755553

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=88.00  E-value=1.9  Score=27.97  Aligned_cols=33  Identities=27%  Similarity=0.277  Sum_probs=26.8

Q ss_pred             HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 041967           46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAI   78 (227)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al   78 (227)
                      .+.+.+..+-.++..+++.|.|++||.+..++.
T Consensus        10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa   42 (97)
T 2crb_A           10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKAT   42 (97)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            445678888889999999999999998887764

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.97  E-value=1.8  Score=37.52  Aligned_cols=66  Identities=12%  Similarity=0.003  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967           85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-------AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus        85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      +..+..+-..|+..+.++.|.....++.  .|.+       ...+|.+|.++...++|.+|..++..|++..|.+
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            5677888899999999999999999885  3432       4678889999999999999999999999988753

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.52  E-value=0.84  Score=38.57  Aligned_cols=95  Identities=8%  Similarity=-0.079  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---hHH----
Q 041967           85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPD---SAKGYKIRGMARARLGQWEEAANDLHVASKLDYD---EEI----  154 (227)
Q Consensus        85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~----  154 (227)
                      ..++..+|..|+..|++..|...|.++......   -...++....++...+++..+...+.++..+...   ...    
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            346788999999999999999999998765433   2468888888999999999999999998766322   122    


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          155 GMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       155 ~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      ....+.++...+++..|...|-...
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~~  235 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDSL  235 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHh
Confidence            1234455567788888887775543

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=87.50  E-value=0.51  Score=29.28  Aligned_cols=32  Identities=19%  Similarity=0.174  Sum_probs=22.2

Q ss_pred             HHHHHHhhhcHHHHhhhhhhhhhhhhhhhhhh
Q 041967          190 ERQRKQAGADREALSGLRDGMASDFFSLCFCN  221 (227)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  221 (227)
                      ++...+++.||++..+++||.+..++.-+..|
T Consensus        10 ee~~~~~m~dPEi~~im~DP~~~~~lq~~~~N   41 (71)
T 2llw_A           10 EETYQRAMKDPEVAAIMQDPVMQSILQQAQQN   41 (71)
T ss_dssp             HHHHHHHHHSHHHHHHHTCTHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCHHHHHHhCCHHHHHHHHHHHHC
Confidence            34455677788888888888877777655443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=87.04  E-value=15  Score=34.80  Aligned_cols=96  Identities=15%  Similarity=-0.009  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Q 041967           86 ILYAARAGVYVKLNKPNAAIRDAYVALET----NPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD--YDEEIGMALK  159 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~l~  159 (227)
                      ..|..+-..|++.|+.++|...|......    -.-+...|..+-..|++.|..++|...|.+.....  |+--....+-
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            35778888999999999999999764432    34567789999999999999999999999988764  5544444444


Q ss_pred             HHHHhhhh-HHHHHHHHHHHHHH
Q 041967          160 KVEPNARR-IQEHRRKYERLRKE  181 (227)
Q Consensus       160 ~~~~~~~~-~~~a~~~~~~~~~~  181 (227)
                      ..+-+.|. .++|..-++.+...
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHc
Confidence            45555565 45677777776544

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=86.32  E-value=3.8  Score=36.42  Aligned_cols=86  Identities=14%  Similarity=0.008  Sum_probs=54.5

Q ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 041967           61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAAN  140 (227)
Q Consensus        61 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  140 (227)
                      ++..+...++...+.+.....+ +....-.++...++.|++..|..+|...-........+.|++|.++..+|+..+|..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~  340 (618)
T 1qsa_A          262 LMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKE  340 (618)
T ss_dssp             SCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCChHHHHHHHhccccCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHH
Confidence            3334423444555555444333 222233344445567888888888876554434567788888998888999888888


Q ss_pred             HHHHHHh
Q 041967          141 DLHVASK  147 (227)
Q Consensus       141 ~~~~a~~  147 (227)
                      .|.++..
T Consensus       341 ~~~~~a~  347 (618)
T 1qsa_A          341 ILHQLMQ  347 (618)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            8887765

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=86.22  E-value=7  Score=28.25  Aligned_cols=64  Identities=11%  Similarity=0.061  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--H----H--HH-HHHHHHHHHcCCcHHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS--A----I--LY-AARAGVYVKLNKPNAAIRDAYVALE  113 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~----~--~~-~~~g~~~~~~~~~~~A~~~~~~al~  113 (227)
                      ....-+..|..+|..|+|-+|.+.++.+-...+..  .    .  +. ..-|..+.+.|+...|...+.+++.
T Consensus        31 ~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~  103 (161)
T 2ijq_A           31 TLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ  103 (161)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34556788899999999999999999998876543  1    1  22 3334455667899999999988876

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=85.24  E-value=3.4  Score=25.66  Aligned_cols=29  Identities=17%  Similarity=0.131  Sum_probs=25.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          124 IRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       124 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      .+|..+...|++++|..+|.+|+.+.|..
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP   50 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP   50 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence            47888999999999999999999998886

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=83.07  E-value=3.2  Score=26.41  Aligned_cols=32  Identities=31%  Similarity=0.358  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIM   79 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~   79 (227)
                      ...+..+...|...=+.|+|++|+.+|..+++
T Consensus        16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie   47 (83)
T 2w2u_A           16 EEMARKYAINAVKADKEGNAEEAITNYKKAIE   47 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34667788888888888999888888888875

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=82.22  E-value=24  Score=31.24  Aligned_cols=127  Identities=10%  Similarity=-0.064  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAI----LYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      .+...+...+..++.+.|...+.......+.+..    .+..++.-....+...++...+.......++....-+..+. 
T Consensus       216 ~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~-  294 (618)
T 1qsa_A          216 QMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-  294 (618)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHH-
Confidence            3455566677777999999999887654433332    22222323333343667788888766554443333333344 


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041967          129 RARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       129 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                      ....|++..|..+|.....-.... .....++......|+..++...|..+.+
T Consensus       295 Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            446799999999998665432233 3455888888899999999998877764

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.54  E-value=2.9  Score=36.26  Aligned_cols=67  Identities=15%  Similarity=0.177  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS  118 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  118 (227)
                      .+..+..+-..|+..+.|++|..+..++.  .|..       ..++|..|.++.-.++|.+|..++..|++..|.+
T Consensus       230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            35566777888999999999999999985  4432       5688889999999999999999999999988754

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=81.50  E-value=1.3  Score=26.52  Aligned_cols=23  Identities=0%  Similarity=-0.012  Sum_probs=10.6

Q ss_pred             HHHhhhcHHHHhhhhhhhhhhhh
Q 041967          193 RKQAGADREALSGLRDGMASDFF  215 (227)
Q Consensus       193 ~~~~~~~~~~~~~l~~~~~~~~~  215 (227)
                      ..++..||++..+++||.+..++
T Consensus         5 ~~kl~~dPe~~~~m~dP~~~~~l   27 (62)
T 2lnm_A            5 ISKIMENPDVAMAFQNPRVQAAL   27 (62)
T ss_dssp             HHHHTTSHHHHHHTTSHHHHHHH
T ss_pred             HHHHHcChHHHHHcCCHHHHHHH
Confidence            34444445444444444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-12
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	4e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	5e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.004
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-05
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-04
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	6e-04
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	7e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.001
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.002

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.5 bits (148), Expect = 2e-12
 Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 6/165 (3%)

Query: 50  AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAY 109
           +A   K +   L    K  +A      AI  NP  A+ Y  RA  Y+K+ +P  A+ D  
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 110 VALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD------YDEEIGMALKKVEP 163
            ALE +  S K +   G  +  +  ++EA  +L  A  L       + ++I  AL+  + 
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122

Query: 164 NARRIQEHRRKYERLRKERELKNFERERQRKQAGADREALSGLRD 208
                 E RR ++       L       + ++    +    G  D
Sbjct: 123 KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 53.1 bits (127), Expect = 4e-09
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 1/125 (0%)

Query: 60  DLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA 119
           + +SEG+L+ A+  L EAI  +P  A L ++   +         A      +++  P+  
Sbjct: 5   NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 64

Query: 120 KGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYERLR 179
            G              ++ A     A  L  +EE+          +   Q++ +  E   
Sbjct: 65  PGASQLRHLVKAAQARKDFAQGAATAKVLGENEEL-TKSLVSFNLSMVSQDYEQVSELAL 123

Query: 180 KEREL 184
           +  EL
Sbjct: 124 QIEEL 128

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 8e-08
 Identities = 13/78 (16%), Positives = 28/78 (35%)

Query: 58  AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD 117
           A      G  E A     +     P +  +    + ++ +  + + +   + +A++ NP 
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 118 SAKGYKIRGMARARLGQW 135
            A+ Y   G      GQ 
Sbjct: 66  LAEAYSNLGNVYKERGQL 83

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 9e-08
 Identities = 25/144 (17%), Positives = 42/144 (29%), Gaps = 3/144 (2%)

Query: 8   EDDDDIVESDIELDNTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKL 67
             D + +++ I L N        D +      ++ ++             A     +G +
Sbjct: 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN---LACVYYEQGLI 253

Query: 68  EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127
           + AI     AI L P     Y   A    +      A      AL   P  A        
Sbjct: 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313

Query: 128 ARARLGQWEEAANDLHVASKLDYD 151
            +   G  EEA      A ++  +
Sbjct: 314 IKREQGNIEEAVRLYRKALEVFPE 337

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 15/73 (20%), Positives = 29/73 (39%)

Query: 61  LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAK 120
              +G +E+A+    +A+ + P  A  ++  A V  +  K   A+     A+  +P  A 
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

Query: 121 GYKIRGMARARLG 133
            Y   G     + 
Sbjct: 375 AYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 58  AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD 117
           A  L  +G + +A      A+ L PT A      A +  +      A+R    ALE  P+
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 118 SAKGYKIRGMARARLGQWEEAANDLHVASKLDYD-----EEIGMALKK 160
            A  +        + G+ +EA      A ++          +G  LK+
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 9/58 (15%), Positives = 19/58 (32%)

Query: 92  AGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD 149
           A    +     AA R         PD+     +      +  + + +A+   +A K +
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 1/103 (0%)

Query: 76  EAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQW 135
           +AI   P  A+ ++    V+    +   AI     A+  +P+    Y   G        +
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219

Query: 136 EEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYER 177
           + A      A  L  +   +   L  V      I      Y R
Sbjct: 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 4/127 (3%)

Query: 26  MEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA 85
           ++P            +  +++ RD       +AV L  + + E A     +AI LN  + 
Sbjct: 21  IDPVPQNDGPNPVVQIIYSDKFRDV--YDYFRAV-LQRDERSERAFKLTRDAIELNAANY 77

Query: 86  ILYAARAGVYVKLNK-PNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHV 144
            ++  R  +   L K  +  +      +E  P + + +  R +    L    +    +  
Sbjct: 78  TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIAD 137

Query: 145 ASKLDYD 151
               D  
Sbjct: 138 ILNQDAK 144

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 7/99 (7%)

Query: 77  AIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWE 136
            I+ +     +Y     V  +  +   A +    A+E N  +   +  R +    L +  
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 137 EAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKY 175
               +            I    K  +    R        
Sbjct: 95  HEEMN-------YITAIIEEQPKNYQVWHHRRVLVEWLR 126

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 7e-05
 Identities = 16/129 (12%), Positives = 36/129 (27%)

Query: 57  KAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNP 116
           + +  + EG L +A+     A+  +P     +        +  +   AI      LE  P
Sbjct: 25  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 84

Query: 117 DSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYE 176
           D+        ++        +A   L    +        +   +       +   +R   
Sbjct: 85  DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 144

Query: 177 RLRKERELK 185
            L  +    
Sbjct: 145 SLLSDSLFL 153

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 18/119 (15%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 51  ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYV 110
           A   K    D   +   + A+    +A  L+PT+      +A VY +    N        
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 111 ALETNPDSAKGYKI-------RGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVE 162
           A+E   ++ + Y+         G +  +  ++++A +  + +       ++    ++ E
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE 122

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 20/162 (12%), Positives = 42/162 (25%), Gaps = 7/162 (4%)

Query: 58  AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPD 117
            +    +      +   + +                +    N+ + A      A +  P 
Sbjct: 127 GIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHAAQLVPS 184

Query: 118 SAKGYKIRGMARARLGQWEEAANDLH--VASKLDYDEEIGMALKKVEPNARRIQEHRRKY 175
           + + Y    +  +  G            +A K  +        K +        E + K+
Sbjct: 185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKW 244

Query: 176 ERLRKERELKNFERERQRKQAGADREALSGLRDGMASDFFSL 217
                   +K F +           E LS LR+ +   F  L
Sbjct: 245 ---GVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKEL 283

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 21/166 (12%)

Query: 44  TEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIML---------------NPTSAILY 88
           T+E  + A + K K       GK   A+ Q  + +                        +
Sbjct: 8   TKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 67

Query: 89  AARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKL 148
              A  Y+KL +   A+     AL  +  + KG   RG A+  + ++E A  D     ++
Sbjct: 68  LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127

Query: 149 DYDEEIGMALKKVEPNARRIQEHRRKYERLRKERELKNFERERQRK 194
           +         K         Q+  +++    +      F++  ++ 
Sbjct: 128 NPQN------KAARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQD 167

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 1e-04
 Identities = 11/70 (15%), Positives = 24/70 (34%)

Query: 65  GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI 124
             +E      T+   L    +         Y+ L   ++A     +A+  N  +   ++ 
Sbjct: 189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 248

Query: 125 RGMARARLGQ 134
             +  + LGQ
Sbjct: 249 ALLELSLLGQ 258

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 49  DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDA 108
           +  N  K K    +S G ++DA+   +EAI L+P + +LY+ R+  Y K      A  D 
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 109 YVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLD-YDEEIGMALKKVE 162
              ++  PD  KGY  +  A   L ++EEA        K +  + ++   L+ +E
Sbjct: 61  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 16/146 (10%)

Query: 44  TEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNA 103
            +     A   K +A D       E+AI   ++AI LNP++AI Y  R+  Y++      
Sbjct: 3   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGY 62

Query: 104 AIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEP 163
           A+ DA  A+E +    KGY  R  +   LG++  A  D     K+   ++          
Sbjct: 63  ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK---------- 112

Query: 164 NARRIQEHRRKYERLRKERELKNFER 189
                 + + KY+   K  + K FER
Sbjct: 113 ------DAKMKYQECNKIVKQKAFER 132

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 6e-04
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 96  VKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEE-- 153
           +   + N  I    + L+    + +         A+  +W++A   L +A+ +  +    
Sbjct: 97  LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHS 156

Query: 154 -IGMALKKVE 162
            I  A++ V 
Sbjct: 157 KIDKAMECVW 166

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (84), Expect = 7e-04
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 38  DPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIM----------------LN 81
           D  ++  +++   +   K            E AI + T+ +                 L 
Sbjct: 14  DVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ 73

Query: 82  PTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAAND 141
           P +           +K++    A+     ALE +P + K    R      L ++++A  D
Sbjct: 74  PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD 133

Query: 142 LHVASKLD-YDEEIGMALKKVEPNARRIQEHRRKY 175
           L  A ++   D+ I   L KV+   +  ++  +  
Sbjct: 134 LKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 6/82 (7%), Positives = 16/82 (19%)

Query: 68  EDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM 127
           + +       ++                  L     + ++       N        +   
Sbjct: 225 DQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR 284

Query: 128 ARARLGQWEEAANDLHVASKLD 149
           A   L   +E          +D
Sbjct: 285 ALDPLLYEKETLQYFSTLKAVD 306

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 5/107 (4%)

Query: 76  EAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-----AKGYKIRGMARA 130
           + I  +   A   A RA V +    P+ A R A +ALE  P            + G    
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 131 RLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEHRRKYER 177
             G+   +   +    ++    ++             I   +   + 
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQT 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.85
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.82
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.81
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.81
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.81
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.78
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.74
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.73
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.72
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.7
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.68
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.68
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.65
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.63
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.63
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.62
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.62
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.6
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.56
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.56
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.51
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.5
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.49
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.43
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.39
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.38
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.38
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.37
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.33
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.33
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.23
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.21
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.16
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.16
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.13
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.12
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.12
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.08
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.99
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.99
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.96
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.91
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.78
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.72
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.6
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.59
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.52
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.34
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.99
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.91
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.86
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	93.56
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	87.37
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	83.49
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	82.24

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.2e-21  Score=133.97  Aligned_cols=113  Identities=28%  Similarity=0.429  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++..|+.++..|+|++|+.+|.++|..+|+++.+|+++|.+|..+|++++|+..|.+++.++|.++.+|+++|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVE  162 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~  162 (227)
                      ..+|++++|+.+|+++++++|++ ..+..++.+.
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            99999999999999999999999 6666766654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.5e-19  Score=132.96  Aligned_cols=118  Identities=27%  Similarity=0.367  Sum_probs=109.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHH
Q 041967           45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKI  124 (227)
Q Consensus        45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  124 (227)
                      +.....++.+...|+.+++.|+|++|+.+|++++.++|+++.+|+++|.|++.+|++++|+.+|+++++++|.+..+|+.
T Consensus         4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~   83 (159)
T d1a17a_           4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHH
Confidence            34446788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 041967          125 RGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVE  162 (227)
Q Consensus       125 la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~  162 (227)
                      +|.++..+|++++|+.+|++++.++|++ .+...+..+.
T Consensus        84 ~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          84 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999998 5555555443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-18  Score=129.32  Aligned_cols=127  Identities=22%  Similarity=0.210  Sum_probs=112.8

Q ss_pred             HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHH
Q 041967           46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---------------AILYAARAGVYVKLNKPNAAIRDAYV  110 (227)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~g~~~~~~~~~~~A~~~~~~  110 (227)
                      +....+..+...|+.++..|+|++|+..|.++|...|..               ..++.++|.||++.|++++|+.++++
T Consensus         8 ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~   87 (170)
T d1p5qa1           8 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK   87 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhh
Confidence            344568889999999999999999999999999987764               35788999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHH
Q 041967          111 ALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHR  172 (227)
Q Consensus       111 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~  172 (227)
                      +|.++|+++.+|+++|.++..+|++++|+.+|++++.++|++ .+...+..+....+...+..
T Consensus        88 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          88 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998 66667777776665555443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=8.3e-20  Score=138.24  Aligned_cols=103  Identities=28%  Similarity=0.360  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .++.+...|+.+++.|+|++|+..|.++|.++|.++.+|+++|.||...|++++|+.+|++++.++|+++.+|+++|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      ..+|++++|+..|++++.++|.+
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999998853

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.81  E-value=1.5e-18  Score=126.85  Aligned_cols=121  Identities=21%  Similarity=0.186  Sum_probs=107.6

Q ss_pred             HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCcHHHHHHHH
Q 041967           46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----------------AILYAARAGVYVKLNKPNAAIRDAY  109 (227)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~~g~~~~~~~~~~~A~~~~~  109 (227)
                      +..+.+..+...|+.+|+.|+|.+|+..|.+++...|..                ..++.|+|.||+++|++.+|+.+|+
T Consensus        12 e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~   91 (153)
T d2fbna1          12 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS   91 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhh
Confidence            344678899999999999999999999999999876643                2478899999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh
Q 041967          110 VALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNAR  166 (227)
Q Consensus       110 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~  166 (227)
                      ++|.++|.+..+|+++|.++..+|++++|+.+|+++++++|++ .+...+..+...++
T Consensus        92 ~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          92 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998 66666666654443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.81  E-value=4e-18  Score=126.42  Aligned_cols=125  Identities=19%  Similarity=0.213  Sum_probs=110.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHH
Q 041967           45 EEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS---------------AILYAARAGVYVKLNKPNAAIRDAY  109 (227)
Q Consensus        45 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~g~~~~~~~~~~~A~~~~~  109 (227)
                      .+....+..+...|+.++..|+|.+|+..|.+++...|..               ..++.++|.||+.+|++.+|+.+|+
T Consensus         9 ~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~   88 (168)
T d1kt1a1           9 KEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD   88 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhh
Confidence            3445678999999999999999999999999999765442               3578899999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHH
Q 041967          110 VALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQ  169 (227)
Q Consensus       110 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~  169 (227)
                      +++.++|.+..+|+++|.++..+|++++|+.+|.+++.++|++ .+...++.+....+...
T Consensus        89 ~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  149 (168)
T d1kt1a1          89 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHN  149 (168)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Confidence            9999999999999999999999999999999999999999999 66667776665555443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.3e-17  Score=130.49  Aligned_cols=119  Identities=18%  Similarity=0.087  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      +..+..++.+|.+++..|+|++|+..|+++|.++|+++.+|+++|.++..+|++++|+..|++++.++|+++.+++.+|.
T Consensus        34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  113 (259)
T d1xnfa_          34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  113 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNAR  166 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~  166 (227)
                      ++..+|++..|+..|+++++++|.+ .....+.......+
T Consensus       114 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  153 (259)
T d1xnfa_         114 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD  153 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence            9999999999999999999999987 44334444433333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=1.5e-17  Score=123.27  Aligned_cols=121  Identities=19%  Similarity=0.218  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIML----------------NPTSAILYAARAGVYVKLNKPNAAIRDAYVAL  112 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  112 (227)
                      ..+..+...|+.++..|+|.+|+..|.++|..                +|....++.++|.|++++|++++|+..|+++|
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            45678899999999999999999999999864                34456789999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHH
Q 041967          113 ETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQ  169 (227)
Q Consensus       113 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~  169 (227)
                      +++|+++.+|+++|.+|..+|+++.|+..|+++++++|++ .+...+..+........
T Consensus       105 ~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~  162 (169)
T d1ihga1         105 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK  162 (169)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998 55666666655444433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8e-18  Score=119.28  Aligned_cols=111  Identities=16%  Similarity=0.152  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH-------HHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA-------KGY  122 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~  122 (227)
                      .+..+..+|+.++..|+|++|+.+|+++|.++|+++.+++++|.+|..+|+|++|+.+|+++|.++|.++       .+|
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999999998775       477


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 041967          123 KIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKK  160 (227)
Q Consensus       123 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~  160 (227)
                      +.+|.++..++++++|+.+|.+++..+|+.++...+..
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~~  120 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ  120 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            78889999999999999999999999887655444433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.4e-17  Score=121.78  Aligned_cols=131  Identities=12%  Similarity=0.072  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..++..|..++..|+|+.|+..|.++   .|.++.+|+++|.+|+.+|++++|+.+|+++|+++|+++.+|+++|.++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            4567788999999999999999999863   5667899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-----------------EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ..+|++++|+..|++++...|.+                 .++..++.++...|++.++...+.+..+..+
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999876543                 3455788899999999999999887765433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.4e-17  Score=131.94  Aligned_cols=137  Identities=13%  Similarity=0.058  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN-KPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      +...+++..+|.++.+.+.+++|+.++.++|.++|.+..+|+++|.++...| ++++|+..+++++.++|++..+|+.+|
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~  119 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence            4567888899999999999999999999999999999999999999999887 589999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          127 MARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .++..+|++++|+..|.+++.++|.+ .+|..++.+....+++.++...++++.+..+.
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~  178 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  178 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc
Confidence            99999999999999999999999999 88999999999999999999999998877664

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.72  E-value=4.7e-17  Score=112.56  Aligned_cols=95  Identities=11%  Similarity=0.009  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR  131 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  131 (227)
                      ..++..|..+++.|++.+|+..|++++..+|+++.+|+.+|.++...|++.+|+.+|++++.++|++..+|+.+|.+|..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHH
Q 041967          132 LGQWEEAANDLHVAS  146 (227)
Q Consensus       132 ~g~~~~A~~~~~~a~  146 (227)
                      +|++.+|+++|++.+
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.7e-17  Score=113.88  Aligned_cols=110  Identities=11%  Similarity=-0.013  Sum_probs=95.6

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 041967           55 KLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLN---KPNAAIRDAYVALETNPDS--AKGYKIRGMAR  129 (227)
Q Consensus        55 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~  129 (227)
                      -.+++.++..+++++|.+.|++++..+|.++.+++++|.|+.+.+   ++.+|+..|++++..+|..  ..+|+++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            356788889999999999999999999999999999999998755   4567999999999998766  45899999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPN  164 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~  164 (227)
                      ..+|+++.|+.+|++++.++|++ .+....+.+...
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999998 444455444433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.7e-16  Score=127.74  Aligned_cols=136  Identities=13%  Similarity=0.099  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEG-KLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGM  127 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  127 (227)
                      ....+|+.+|.++...| ++++|+..+.+++..+|++..+|.++|.++..+|++++|+..+.+++.++|++..+|+.+|.
T Consensus        75 ~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~  154 (315)
T d2h6fa1          75 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW  154 (315)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHH
Confidence            56778999999999876 69999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHh
Q 041967          128 ARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARR------IQEHRRKYERLRKEREL  184 (227)
Q Consensus       128 ~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~  184 (227)
                      ++..+|++++|+.+|.+++.++|.+ .+|..++.+....+.      +.++...+.++.+..+.
T Consensus       155 ~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~  218 (315)
T d2h6fa1         155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH  218 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC
Confidence            9999999999999999999999998 778888887655444      56777777777766554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8e-16  Score=125.06  Aligned_cols=135  Identities=19%  Similarity=0.098  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..+..+|..++..|++++|+..|++++.++|+++.+++++|.++...|++.+|+..++.++...|.+...+..+|.++
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  315 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK  315 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence            45677888888889999999999999999999988888999999999999999999999999999999988899999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ...|++++|+..|+++++++|++ .++..++.++...|++.+|...|+++.+..+.
T Consensus       316 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999888 66778888888899999998888887765543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6e-15  Score=111.35  Aligned_cols=102  Identities=18%  Similarity=0.182  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC------------
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS------------  118 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------  118 (227)
                      +..++++|.+++..|+|++|+..|++||+++|+++.+|+++|.++.++|++++|+.+|++++...|.+            
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~  115 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF  115 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhc
Confidence            56899999999999999999999999999999999999999999999999999999999999876543            


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q 041967          119 ----AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       119 ----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  152 (227)
                          ..+++++|.++..+|++++|+..|.+++.+.|..
T Consensus       116 ~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         116 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                4688999999999999999999999999999874

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.63  E-value=1e-15  Score=110.61  Aligned_cols=110  Identities=17%  Similarity=0.078  Sum_probs=92.5

Q ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL----------NKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        61 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      +-+.+.|++|+..|++++.++|+++.+++++|.++...          +.+++|+..|+++++++|+++.+|+++|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            34556799999999999999999999999999999865          44578999999999999999999999999998


Q ss_pred             HcCC-----------HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHH
Q 041967          131 RLGQ-----------WEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQE  170 (227)
Q Consensus       131 ~~g~-----------~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~  170 (227)
                      .+|.           +..|+.+|++++.++|++ ..+..++.+....+.+.+
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8764           689999999999999999 445566655544443333

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.2e-14  Score=116.86  Aligned_cols=98  Identities=14%  Similarity=0.092  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 041967           54 TKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLG  133 (227)
Q Consensus        54 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  133 (227)
                      .+.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|.+++.++|++..+|+.+|.++...|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            35667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHhcCCC
Q 041967          134 QWEEAANDLHVASKLDYD  151 (227)
Q Consensus       134 ~~~~A~~~~~~a~~~~p~  151 (227)
                      ++++|+..|.+++.+.|.
T Consensus       102 ~~~~A~~~~~~~~~~~~~  119 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPA  119 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTT
T ss_pred             cccccccchhhHHHhccc
Confidence            777766666666655543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.2e-15  Score=121.44  Aligned_cols=118  Identities=18%  Similarity=0.076  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      .+..+..+|..+...|++.+|+..|..++...|.++..+..+|.++...|++++|+..|+++++++|+++.+++.+|.++
T Consensus       270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  349 (388)
T d1w3ba_         270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL  349 (388)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhh
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARR  167 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~  167 (227)
                      ..+|++++|+.+|+++++++|++ .++..++.++...|+
T Consensus       350 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         350 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999998 778899888877663

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.3e-14  Score=115.17  Aligned_cols=99  Identities=15%  Similarity=0.010  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 041967           86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPN  164 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~  164 (227)
                      .++..+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+.+|+++++++|++ .++..++.++..
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            3455566666666666666666666666677777777777777777777777777777777777776 566677777777


Q ss_pred             hhhHHHHHHHHHHHHHHHHh
Q 041967          165 ARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       165 ~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .|++.+|...|+++.+..+.
T Consensus       253 ~g~~~~A~~~~~~al~l~p~  272 (323)
T d1fcha_         253 LGAHREAVEHFLEALNMQRK  272 (323)
T ss_dssp             HTCHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCCc
Confidence            77777777777766665553

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.2e-14  Score=113.37  Aligned_cols=119  Identities=15%  Similarity=0.118  Sum_probs=108.0

Q ss_pred             CCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 041967           65 GKLEDAIGQLTEAIMLNP----TSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAAN  140 (227)
Q Consensus        65 ~~~~~A~~~~~~al~~~p----~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  140 (227)
                      .+++.|+..+.+++...+    ..+.+++++|.+|...|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            356678888888887543    3467999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          141 DLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       141 ~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      .|++++.++|++ .++..++.++...|++.+|...+++..+..+
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p  136 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP  136 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc
Confidence            999999999998 8888999999999999999999998887654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.56  E-value=5.5e-14  Score=96.73  Aligned_cols=92  Identities=15%  Similarity=0.093  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhh
Q 041967           87 LYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNA  165 (227)
Q Consensus        87 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~  165 (227)
                      .++.+|.++++.|++.+|+..|++++..+|+++.+|+.+|.++...|++++|+.+|+++++++|++ .++..++.++...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            467899999999999999999999999999999999999999999999999999999999999999 8899999999999


Q ss_pred             hhHHHHHHHHHHH
Q 041967          166 RRIQEHRRKYERL  178 (227)
Q Consensus       166 ~~~~~a~~~~~~~  178 (227)
                      |++.+|...+++.
T Consensus        98 g~~~~A~~~l~~~  110 (112)
T d1hxia_          98 HNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999998765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=5.2e-14  Score=105.64  Aligned_cols=100  Identities=20%  Similarity=0.081  Sum_probs=94.6

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 041967           84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVE  162 (227)
Q Consensus        84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~  162 (227)
                      ++..+...|..++..|+|++|+..|+++|.++|.++.+|+++|.||..+|+++.|+.+|.+++.++|++ .++..++.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            456688999999999999999999999999999999999999999999999999999999999999999 8889999999


Q ss_pred             HhhhhHHHHHHHHHHHHHHHH
Q 041967          163 PNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       163 ~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ..+|++.+|...++++....+
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCc
Confidence            999999999999998877655

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.5e-14  Score=97.94  Aligned_cols=97  Identities=19%  Similarity=0.149  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhh
Q 041967           88 YAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNAR  166 (227)
Q Consensus        88 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~  166 (227)
                      +...|..++..|++++|+..|+++|..+|.++.+|+.+|.++..+|++.+|+..|.+++.++|.+ ..+..++.++...|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            56789999999999999999999999999999999999999999999999999999999999999 77889999999999


Q ss_pred             hHHHHHHHHHHHHHHHHh
Q 041967          167 RIQEHRRKYERLRKEREL  184 (227)
Q Consensus       167 ~~~~a~~~~~~~~~~~~~  184 (227)
                      ++.+|...++++.+..+.
T Consensus        86 ~~~~A~~~~~~a~~~~p~  103 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEAN  103 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTT
T ss_pred             CHHHHHHHHHHHHHhCCC
Confidence            999999999999877665

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.3e-13  Score=99.18  Aligned_cols=99  Identities=23%  Similarity=0.155  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 041967           86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPN  164 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~  164 (227)
                      ..+...|..+++.|+|++|+.+|++++.++|+++.+|+++|.++..+|+++.|+..|.++++++|.+ .++..++.++..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            4466789999999999999999999999999999999999999999999999999999999999999 889999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHh
Q 041967          165 ARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       165 ~~~~~~a~~~~~~~~~~~~~  184 (227)
                      .|++.+|...++++.+..+.
T Consensus        91 ~g~~~eA~~~~~~a~~~~p~  110 (159)
T d1a17a_          91 LGKFRAALRDYETVVKVKPH  110 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTT
T ss_pred             cCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999877654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.50  E-value=4.9e-14  Score=102.64  Aligned_cols=102  Identities=20%  Similarity=0.152  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------------AILYAARAGVYVKLNKPNAAIRDAYVALETNPD  117 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  117 (227)
                      .+..++..|..++..|+|++|+..|+++|.++|..            +.+|.++|.+|..+|++++|+.++++++.+.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            34555667999999999999999999999988764            468999999999999999999999999987542


Q ss_pred             -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 041967          118 -----------SAKGYKIRGMARARLGQWEEAANDLHVASKLDYD  151 (227)
Q Consensus       118 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  151 (227)
                                 ...+++++|.+|..+|++++|+.+|++++.+.|.
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                       2457899999999999999999999999999764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-13  Score=91.70  Aligned_cols=82  Identities=9%  Similarity=-0.081  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-------AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYK  123 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  123 (227)
                      ++.++.+|..++..|+|.+|+..|++|+.+.|.+       +.++.++|.++.+.|++++|+..|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            5778999999999999999999999999876543       678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 041967          124 IRGMARARL  132 (227)
Q Consensus       124 ~la~~~~~~  132 (227)
                      +++.+...+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            988765543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.43  E-value=1.1e-12  Score=96.36  Aligned_cols=91  Identities=14%  Similarity=0.097  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMA  128 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  128 (227)
                      ..+..+.++|.++++.|+|++|+..|+++|.++|+++.+|+++|.+|+.+|++++|+.+|+++++++|++..++..++.+
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~  154 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV  154 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHH
Q 041967          129 RARLGQWEEAA  139 (227)
Q Consensus       129 ~~~~g~~~~A~  139 (227)
                      ...+....++.
T Consensus       155 ~~~l~~~~~~~  165 (169)
T d1ihga1         155 KQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            87776665543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.7e-13  Score=92.48  Aligned_cols=95  Identities=9%  Similarity=0.018  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHH-------
Q 041967           86 ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMA-------  157 (227)
Q Consensus        86 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~-------  157 (227)
                      ..+-++|.+++..|+|++|+.+|+++|.++|+++.+++++|.+|..+|++++|+..|.+++.++|.+ ..+..       
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999999999999999999876 44444       


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHH
Q 041967          158 LKKVEPNARRIQEHRRKYERLRK  180 (227)
Q Consensus       158 l~~~~~~~~~~~~a~~~~~~~~~  180 (227)
                      ++.+....+.+.+|...+++...
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHh
Confidence            44555555566666666655543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.38  E-value=2e-11  Score=90.62  Aligned_cols=111  Identities=14%  Similarity=0.038  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCcHHHH
Q 041967           48 RDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS----------------------AILYAARAGVYVKLNKPNAAI  105 (227)
Q Consensus        48 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~g~~~~~~~~~~~A~  105 (227)
                      ...++.++..|..+...|++++|+..|.+|+.+.+..                      ..++.++|.++...|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            3578999999999999999999999999999987753                      257889999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhcCCChHHHHHH
Q 041967          106 RDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVA-------SKLDYDEEIGMAL  158 (227)
Q Consensus       106 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------~~~~p~~~~~~~l  158 (227)
                      .++++++.++|.+..+|..++.++..+|++.+|+..|.++       +-+.|........
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~  147 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  147 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence            9999999999999999999999999999999999999998       5567765443333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.7e-12  Score=92.76  Aligned_cols=89  Identities=13%  Similarity=0.066  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ....+.++|.++++.|+|++|+.++.++|.++|+++.+++++|.+++.+|++++|+.+|++++.++|+++.+...++.+.
T Consensus        61 ~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          61 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            44667889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHcCCHHHH
Q 041967          130 ARLGQWEEA  138 (227)
Q Consensus       130 ~~~g~~~~A  138 (227)
                      ...+.....
T Consensus       141 ~~~~~~~~~  149 (170)
T d1p5qa1         141 QRIRRQLAR  149 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.37  E-value=8.1e-12  Score=91.71  Aligned_cols=88  Identities=16%  Similarity=0.063  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ....+.++|.++++.|+|.+|+..+++++.++|++..+++++|.++..+|++++|+.+|++++.++|++..++..++.+.
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHcCCHHH
Q 041967          130 ARLGQWEE  137 (227)
Q Consensus       130 ~~~g~~~~  137 (227)
                      ...+.+.+
T Consensus       143 ~~~~~~~e  150 (168)
T d1kt1a1         143 KKAKEHNE  150 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhHHH
Confidence            77776654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.33  E-value=8.8e-12  Score=90.16  Aligned_cols=84  Identities=11%  Similarity=0.039  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ....+.++|.++++.|+|++|+.+|+++|.++|.+..+|+++|.++..+|+++.|+.+|++++.++|++..+...++.+.
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHcC
Q 041967          130 ARLG  133 (227)
Q Consensus       130 ~~~g  133 (227)
                      ..++
T Consensus       146 ~kl~  149 (153)
T d2fbna1         146 NKLK  149 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.2e-12  Score=83.03  Aligned_cols=80  Identities=15%  Similarity=-0.088  Sum_probs=69.8

Q ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHH
Q 041967           84 SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-------AKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIG  155 (227)
Q Consensus        84 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~  155 (227)
                      ++.-++++|.++++.|+|..|+.+|++|+.+.|.+       ..++.++|.++..+|++++|+.+|+++++++|++ .+.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            45668899999999999999999999999986543       5789999999999999999999999999999998 566


Q ss_pred             HHHHHHHH
Q 041967          156 MALKKVEP  163 (227)
Q Consensus       156 ~~l~~~~~  163 (227)
                      .+++.+..
T Consensus        84 ~Nl~~~~~   91 (95)
T d1tjca_          84 GNLKYFEY   91 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=4.9e-11  Score=94.74  Aligned_cols=134  Identities=13%  Similarity=0.046  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC----
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNP------TSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS----  118 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----  118 (227)
                      ..++.|...|+.+...|+|++|+.+|.+++.+.+      ..+.+|.++|.||..+|++++|+..|++++.+.+..    
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~  114 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR  114 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccch
Confidence            3467899999999999999999999999998732      235689999999999999999999999999887655    


Q ss_pred             --HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          119 --AKGYKIRGMARAR-LGQWEEAANDLHVASKLDYDE-------EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       119 --~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                        ..++..+|.++.. .|+++.|+..|++++.+.+..       .++..++.++...|++.+|...|+++....
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~  188 (290)
T d1qqea_         115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS  188 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC
Confidence              5688889998865 699999999999999874431       335678999999999999999998877643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=2.1e-10  Score=92.48  Aligned_cols=136  Identities=8%  Similarity=-0.044  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEG--KLEDAIGQLTEAIMLNPTSAILY-AARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~-~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      ....++.+|..+...+  ++++|+..+.+++..+|.+..++ ..+|.++...+.++.|+..+++++.++|.+..+|+.+|
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~  185 (334)
T d1dcea1         106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS  185 (334)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHH
T ss_pred             cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            4556777777766655  48888888888888888887765 46677887888888888888888888888888888888


Q ss_pred             HHHHHcCC----------------------------------------------------------------HHHHHHHH
Q 041967          127 MARARLGQ----------------------------------------------------------------WEEAANDL  142 (227)
Q Consensus       127 ~~~~~~g~----------------------------------------------------------------~~~A~~~~  142 (227)
                      .++..+|+                                                                +.+|+..|
T Consensus       186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  265 (334)
T d1dcea1         186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKEL  265 (334)
T ss_dssp             HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHH
Confidence            88777664                                                                44455556


Q ss_pred             HHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 041967          143 HVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERELK  185 (227)
Q Consensus       143 ~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  185 (227)
                      .+++..+|.+ .++..++.++...|++++|...++++.+.+|.+
T Consensus       266 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~  309 (334)
T d1dcea1         266 QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR  309 (334)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence            6666666666 556677777778888888888887777776653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.16  E-value=2.6e-11  Score=86.89  Aligned_cols=91  Identities=16%  Similarity=0.108  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------cHHHH
Q 041967           47 MRDAANMTKLKAVDLISE----------GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK-----------PNAAI  105 (227)
Q Consensus        47 ~~~~~~~~~~~g~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~-----------~~~A~  105 (227)
                      .|+.+.+++..|.+++..          +.+++|+..|+++++++|+++.+|+++|.+|..+|.           |.+|+
T Consensus        27 ~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~  106 (145)
T d1zu2a1          27 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT  106 (145)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhh
Confidence            345688999999998854          556899999999999999999999999999988653           78999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 041967          106 RDAYVALETNPDSAKGYKIRGMARARLGQWEE  137 (227)
Q Consensus       106 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  137 (227)
                      .+|++++.++|++..++..++.+....+.+.+
T Consensus       107 ~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1         107 QFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             hhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998755544443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=2.4e-11  Score=98.19  Aligned_cols=119  Identities=12%  Similarity=-0.001  Sum_probs=103.9

Q ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHH
Q 041967           61 LISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNK--PNAAIRDAYVALETNPDSAKGY-KIRGMARARLGQWEE  137 (227)
Q Consensus        61 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~  137 (227)
                      +...|++.+|+.+|++++..+|+++.+|+.+|.++...++  +.+|+..+.+++..+|.+..++ +..|.++...+.+..
T Consensus        83 ~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1          83 EESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence            3334558999999999999999999999999999988875  7899999999999999999886 567899999999999


Q ss_pred             HHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041967          138 AANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLR  179 (227)
Q Consensus       138 A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  179 (227)
                      |+.++.+++.++|.+ .++..++.+....|++.++...+.+..
T Consensus       163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~  205 (334)
T d1dcea1         163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE  205 (334)
T ss_dssp             HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence            999999999999999 888899999999988876655554433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.5e-11  Score=102.92  Aligned_cols=113  Identities=7%  Similarity=-0.047  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           50 AANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ....+...|..+.+.|++..|+..+.+++..+|  ..++.++|.++...|++++|+.+|.+|+.++|++..+|+.+|.++
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~  196 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA  196 (497)
T ss_dssp             ------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            456677888899999999999999999888776  468888999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 041967          130 ARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPN  164 (227)
Q Consensus       130 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~  164 (227)
                      ...|++.+|+.+|.+++.+.|.. .+..+|+.+...
T Consensus       197 ~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999998887 666677766543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.13  E-value=7.7e-11  Score=92.72  Aligned_cols=126  Identities=16%  Similarity=0.111  Sum_probs=104.3

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 041967           58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEE  137 (227)
Q Consensus        58 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  137 (227)
                      +..++..|++++|+..|+++++.+|+++.++.++|.+++..|++++|+..|+.+++++|++..++..++.++...+...+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999988887777


Q ss_pred             HHHHHHHHHhcC-CCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          138 AANDLHVASKLD-YDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       138 A~~~~~~a~~~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      +...+....... |.+ .............|+..+|...+.++....+
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            665554443333 333 3334556777788999999888877765544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=4.8e-10  Score=88.87  Aligned_cols=135  Identities=19%  Similarity=0.052  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCC----
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS------AILYAARAGVYVK-LNKPNAAIRDAYVALETNPD----  117 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~----  117 (227)
                      ..+..+...|.++...|++++|+.+|.+++.+.+..      ..++.++|.++.. .|++++|+..|++++.+.+.    
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~  154 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            456789999999999999999999999999876554      5678889988865 69999999999999987543    


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChH--------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          118 --SAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEE--------IGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       118 --~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                        ...++.++|.++..+|+|.+|+..|+++....|.+.        .+...+.++...+++..+...+.+..+..+
T Consensus       155 ~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~  230 (290)
T d1qqea_         155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP  230 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred             hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence              245789999999999999999999999999988752        123556666778899999888877765443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.2e-10  Score=79.56  Aligned_cols=95  Identities=9%  Similarity=-0.111  Sum_probs=85.0

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCChH---HHHHHHHHHH
Q 041967           90 ARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQ---WEEAANDLHVASKLDYDEE---IGMALKKVEP  163 (227)
Q Consensus        90 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~~~---~~~~l~~~~~  163 (227)
                      +++..+...+++++|...|++++.++|.++.+++++|.++...++   +.+|+..|++++..+|.+.   ++..++.++.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            466777889999999999999999999999999999999987554   5569999999999998762   5679999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHh
Q 041967          164 NARRIQEHRRKYERLRKEREL  184 (227)
Q Consensus       164 ~~~~~~~a~~~~~~~~~~~~~  184 (227)
                      ..|++.+|...|+++.+..|.
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~  104 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQ  104 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHhhhHHHHHHHHHHHHhCcC
Confidence            999999999999999988876

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=2.2e-09  Score=85.11  Aligned_cols=133  Identities=11%  Similarity=-0.053  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC-----
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTS-----AILYAARAGVYVKLNKPNAAIRDAYVALETNPDS-----  118 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----  118 (227)
                      ..++....+|.+++..|++++|+.+|++++...|.+     ..++..+|.++...|++++|+..|++++.+.+..     
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            456788889999999999999999999999999986     3578899999999999999999999999876543     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----h----HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          119 -AKGYKIRGMARARLGQWEEAANDLHVASKLDYD-----E----EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       119 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-----~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                       ..++..++.++...|++..|...+.+++.+.+.     .    .....++.+....|++..+...+......
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~  162 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV  162 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence             357888999999999999999999999876432     1    23446788888999999999888776644

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.7e-10  Score=97.33  Aligned_cols=124  Identities=10%  Similarity=-0.065  Sum_probs=81.1

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 041967           58 AVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEE  137 (227)
Q Consensus        58 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  137 (227)
                      +......+.|+.|+..|.+++.++|.+...+.++|.++...|++..|+..+.+++..+|  ..+++++|.++...|+++.
T Consensus        93 ~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~  170 (497)
T d1ya0a1          93 LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQ  170 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHH
Confidence            34445567788888888888899999999999999999999999999999999998876  4689999999999999999


Q ss_pred             HHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          138 AANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       138 A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      |+.+|.+|+.++|++ ..+..++.++...|+..+|...|.+.....+
T Consensus       171 A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~  217 (497)
T d1ya0a1         171 AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF  217 (497)
T ss_dssp             HHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence            999999999999999 8889999999999999999999988875433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=8.4e-09  Score=82.15  Aligned_cols=131  Identities=12%  Similarity=-0.040  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSA-ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMAR  129 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  129 (227)
                      ...+...+......|+++.|...|.+++...|.+. .+|..++.+....|+++.|+..|.+++...|.....|...|...
T Consensus        99 ~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e  178 (308)
T d2onda1          99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  178 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            35677788888899999999999999999988764 47888899999999999999999999999999999999888875


Q ss_pred             H-HcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          130 A-RLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       130 ~-~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      . ..|+.+.|...|++++..+|.+ ..|..........|+...++..|+++.+.
T Consensus       179 ~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~  232 (308)
T d2onda1         179 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            4 4688999999999999999998 77888888888999999999999887664

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.96  E-value=2.3e-09  Score=77.22  Aligned_cols=95  Identities=15%  Similarity=-0.002  Sum_probs=80.9

Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----
Q 041967           89 AARAGVYVKLNKPNAAIRDAYVALETNPDSA------------KGYKIRGMARARLGQWEEAANDLHVASKLDYD-----  151 (227)
Q Consensus        89 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-----  151 (227)
                      ...|..++..|+|++|+..|+++|.+.|..+            .+|.++|.+|..+|+++.|+.++++++.+.|.     
T Consensus        13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~   92 (156)
T d2hr2a1          13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   92 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence            3448888899999999999999999988753            57899999999999999999999999987542     


Q ss_pred             --h-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          152 --E-----EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       152 --~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                        .     .++..++.++..+|++++|...|++.....+
T Consensus        93 ~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          93 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence              1     1345789999999999999999998886655

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=2.6e-08  Score=79.21  Aligned_cols=132  Identities=10%  Similarity=-0.126  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK-LNKPNAAIRDAYVALETNPDSAKGYKIRGMARA  130 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  130 (227)
                      ..|...+......|+++.|...|.+++...|.+...+...|..... .|+.+.|...|++++..+|+++..|..++..+.
T Consensus       135 ~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~  214 (308)
T d2onda1         135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  214 (308)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            4677888888899999999999999999999999999999887655 589999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041967          131 RLGQWEEAANDLHVASKLDYDE-----EIGMALKKVEPNARRIQEHRRKYERLRKERE  183 (227)
Q Consensus       131 ~~g~~~~A~~~~~~a~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  183 (227)
                      ..|+++.|...|++++...|.+     .+|..........|+...+...++++.+.-+
T Consensus       215 ~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         215 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            9999999999999999987643     3576667777788888888777666654433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.78  E-value=7.4e-08  Score=70.86  Aligned_cols=97  Identities=11%  Similarity=0.004  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHcCCHHHHHHHH
Q 041967           85 AILYAARAGVYVKLNKPNAAIRDAYVALETNPDSA----------------------KGYKIRGMARARLGQWEEAANDL  142 (227)
Q Consensus        85 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------~~~~~la~~~~~~g~~~~A~~~~  142 (227)
                      ...+...|......|++++|+..|.+++.+++...                      .++..++.++..+|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            35678899999999999999999999999976431                      47888999999999999999999


Q ss_pred             HHHHhcCCCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041967          143 HVASKLDYDE-EIGMALKKVEPNARRIQEHRRKYERLRKE  181 (227)
Q Consensus       143 ~~a~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  181 (227)
                      ++++.++|.+ ..+..+..++...|+..+|...|+++.+.
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~  130 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  130 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            9999999999 77889999999999999999999887654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=1.4e-07  Score=64.52  Aligned_cols=73  Identities=7%  Similarity=-0.054  Sum_probs=63.2

Q ss_pred             CHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChHHHH
Q 041967           84 SAILYAARAGVYVKLNK---PNAAIRDAYVALETNPDSA-KGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGM  156 (227)
Q Consensus        84 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  156 (227)
                      .....|+.|+++.+..+   ..+|+..++.+++.+|.+. +++|.+|..|..+|+|+.|..++.++++++|+|.-..
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            36789999999987754   5689999999999998775 7999999999999999999999999999999984333

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=3.7e-07  Score=62.33  Aligned_cols=79  Identities=14%  Similarity=-0.030  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGK---LEDAIGQLTEAIMLNPTSA-ILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~-~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      .++.|..|..+.+..+   ..+|+.+++.++..+|... .+++++|..|+++|+|++|+.+++++++++|+|..+....-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            5788999999988764   5789999999999998765 79999999999999999999999999999999998876655


Q ss_pred             HHH
Q 041967          127 MAR  129 (227)
Q Consensus       127 ~~~  129 (227)
                      .+.
T Consensus       115 ~Ie  117 (124)
T d2pqrb1         115 MVE  117 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=9.1e-07  Score=69.40  Aligned_cols=131  Identities=16%  Similarity=0.036  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCC----HH
Q 041967           52 NMTKLKAVDLISEGKLEDAIGQLTEAIMLNPT-------SAILYAARAGVYVKLNKPNAAIRDAYVALETNPDS----AK  120 (227)
Q Consensus        52 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~  120 (227)
                      ..+...+..+...+++..+...+.++....+.       ...++..+|.++...|+++.|...+.+++...|.+    ..
T Consensus       173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  252 (366)
T d1hz4a_         173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  252 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence            34444555555556666666665555543222       13456777888888888888888888888776654    34


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041967          121 GYKIRGMARARLGQWEEAANDLHVASKLD------YDE-EIGMALKKVEPNARRIQEHRRKYERLRKER  182 (227)
Q Consensus       121 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  182 (227)
                      .+..+|.++...|+++.|...+++++...      |.. .++..++.++...|++.+|...+++.....
T Consensus       253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~  321 (366)
T d1hz4a_         253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  321 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            66778888889999999988888887542      223 445678888888888888888887776543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.52  E-value=3.1e-07  Score=71.59  Aligned_cols=78  Identities=15%  Similarity=0.037  Sum_probs=67.3

Q ss_pred             HHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhhhHHH
Q 041967           93 GVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDE-EIGMALKKVEPNARRIQE  170 (227)
Q Consensus        93 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~~~~~~~  170 (227)
                      .-.+..|++++|+..++++++.+|.+..++..+|.+|+..|++++|+..|+++++++|++ ..+..++.+....+...+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            445678999999999999999999999999999999999999999999999999999998 556666666554444433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.34  E-value=1e-05  Score=61.98  Aligned_cols=98  Identities=14%  Similarity=0.012  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041967           51 ANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----LNKPNAAIRDAYVALETNPDSAKGYKIRG  126 (227)
Q Consensus        51 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la  126 (227)
                      +++++.+|..++.++++.+|+.+|+++.+.  .++.+++++|.+|..    ..++..|+.+++.+...  .++.+...+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccc
Confidence            578999999999999999999999999875  578999999999998    67899999999998765  4888889999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhcCCCh
Q 041967          127 MARAR----LGQWEEAANDLHVASKLDYDE  152 (227)
Q Consensus       127 ~~~~~----~g~~~~A~~~~~~a~~~~p~~  152 (227)
                      .++..    ..+...|...+..+...++..
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~  107 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYAE  107 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhhh
Confidence            88875    468889999999999877654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.99  E-value=0.00012  Score=50.16  Aligned_cols=82  Identities=16%  Similarity=0.069  Sum_probs=51.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 041967           65 GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----LNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR----LGQWE  136 (227)
Q Consensus        65 ~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~  136 (227)
                      .++++|+..|+++.+.  .++.+.+.+|.+|..    ..++.+|+.+|+++...  .++.+.+.+|.+|..    ..++.
T Consensus        37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~  112 (133)
T d1klxa_          37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK  112 (133)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHH
Confidence            4566667766666554  356666667766655    34566677777766654  456666667766665    34666


Q ss_pred             HHHHHHHHHHhcCC
Q 041967          137 EAANDLHVASKLDY  150 (227)
Q Consensus       137 ~A~~~~~~a~~~~p  150 (227)
                      .|+.+|+++.....
T Consensus       113 ~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         113 QAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCC
Confidence            67777776666553

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.91  E-value=0.00017  Score=49.37  Aligned_cols=108  Identities=16%  Similarity=0.086  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 041967           65 GKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARAR----LGQWEEAAN  140 (227)
Q Consensus        65 ~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~  140 (227)
                      .|+++|+.+|.++.+..  ++.+.++++.  ....++++|+..++++...  .++.+.+.+|.+|..    ..++..|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            47899999999998875  4556666664  3457899999999999875  689999999999986    567999999


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHh----hhhHHHHHHHHHHHH
Q 041967          141 DLHVASKLDYDEEIGMALKKVEPN----ARRIQEHRRKYERLR  179 (227)
Q Consensus       141 ~~~~a~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~  179 (227)
                      +|+++...... .....|+.++..    ..+..+|...|++..
T Consensus        81 ~~~~aa~~g~~-~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa  122 (133)
T d1klxa_          81 YYSKACGLNDQ-DGCLILGYKQYAGKGVVKNEKQAVKTFEKAC  122 (133)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHhhhhccCcc-hHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence            99999987532 455567766654    346777777776654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.86  E-value=0.00014  Score=55.31  Aligned_cols=125  Identities=13%  Similarity=0.029  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHhCCCCHHHHH
Q 041967           52 NMTKLKAVDLIS----EGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVK----LNKPNAAIRDAYVALETNPDSAKGYK  123 (227)
Q Consensus        52 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~  123 (227)
                      .....+|..+..    ......|+..+.+...  +.+...++.+|.++..    ..+...+...++.+..  +.++.+++
T Consensus       107 ~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~  182 (265)
T d1ouva_         107 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCF  182 (265)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred             hHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccc--cccccccc
Confidence            444455555554    3456666666666554  3345666777777765    2445566666666554  34667777


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh----hhhHHHHHHHHHHHHHH
Q 041967          124 IRGMARAR----LGQWEEAANDLHVASKLDYDEEIGMALKKVEPN----ARRIQEHRRKYERLRKE  181 (227)
Q Consensus       124 ~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~  181 (227)
                      ++|.++..    ..+++.|+.+|.++...+. ......|+.++..    .++..+|...|+++...
T Consensus       183 ~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~-~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         183 NAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             chhhhcccCcccccchhhhhhhHhhhhcccC-HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence            77777666    5567777777777766642 2444556666543    23556666666666433

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.56  E-value=0.088  Score=31.86  Aligned_cols=34  Identities=26%  Similarity=0.263  Sum_probs=27.4

Q ss_pred             HhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967           46 EMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIM   79 (227)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~   79 (227)
                      .+.+.+..+-.++..+++.|.|++||+++.+|..
T Consensus         3 sPLN~AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           3 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3456788888899999999999999988877653

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=87.37  E-value=1.3  Score=35.32  Aligned_cols=87  Identities=13%  Similarity=0.005  Sum_probs=53.8

Q ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 041967           60 DLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAA  139 (227)
Q Consensus        60 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  139 (227)
                      .++..+....|...+........+ ......++...+..+++..+...+...-......+.+.|++|.++..+|+...|.
T Consensus       261 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~  339 (450)
T d1qsaa1         261 RLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAK  339 (450)
T ss_dssp             TSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcCchHHHHHHHHhhcccccc-hHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHH
Confidence            333445566666666655544333 3322223333455677777777776543322344678888888888888888888


Q ss_pred             HHHHHHHh
Q 041967          140 NDLHVASK  147 (227)
Q Consensus       140 ~~~~~a~~  147 (227)
                      ..|..+..
T Consensus       340 ~~~~~~a~  347 (450)
T d1qsaa1         340 EILHQLMQ  347 (450)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            88887765

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.49  E-value=1.2  Score=36.43  Aligned_cols=46  Identities=11%  Similarity=0.095  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 041967           53 MTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKL   98 (227)
Q Consensus        53 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   98 (227)
                      ....++...+..|+|..|..+.+.++..+|++..+...++.+|.++
T Consensus       432 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l  477 (505)
T d2cfua2         432 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQL  477 (505)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555544444444433

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.24  E-value=1.6  Score=26.83  Aligned_cols=31  Identities=29%  Similarity=0.261  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 041967           49 DAANMTKLKAVDLISEGKLEDAIGQLTEAIM   79 (227)
Q Consensus        49 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~   79 (227)
                      ..+..+...|..+=..|+|++|+.+|.+++.
T Consensus        13 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie   43 (93)
T d1wfda_          13 TAAVAVLKRAVELDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3567778888888888888888888888765