Citrus Sinensis ID: 041970

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MSFFSLGHFFKRLPYKQLTRHQNLFTLIKQKPRTQLTTPSSVLIKVSAPSSSSSSSPCASLSSIYPPSVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHccccEEEEEccccccccccccEEEEEEccccccHHHHHHHHHHHcccccccccEEEEcccHHHHHHHHHccccEEEEcccEEEcccccccccEEEcccccccccccHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHcccccccEEEEccccccccccccccccccHHHHcccccccccccccccEEEEEccHHHHHHHHHHHHHHcccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHcccHHHHHHHHHHHHHHHccccEEEEcccHHHHHEccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHHHHHccccEEEEEcccccccccccEEEEEEEEcccccHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHcccEEEccEEEEEccccccEEEEEEcccccccccccHHHHHHHHHHHHccccccEEEEEcEEcccHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHccEEEEcccccccccccccccEEHHHHHHHHHHHHHHHHHHHcccccEEEEEHHHccc
Coil and Loop (DISEMBL)
msffslghffkrlpykqlTRHQNLFTlikqkprtqlttpssvlikvsapssssssspcaslssiyppsvespyLLVRICCQKHALdmfseaplcfgasstsvdehdndadensdeiyidsifpeckdvDECILNTansiglkeipryevkmgEQCNWIKKAQesfhpvevtkglwivpewnvqatniilnpglafgtgehaTTKLCLLLLRSLIKGGElfldygtvdidpqvIKSAHQNaalnnigpkkmklhlvpdrtfpssmnERVDGIVEYLSShkirgiseteeYDVVIANILLNPLLQLADHIVSyakpgavvgisgilseq
Flexible Loop (DISEMBL)
MSFFSLGHFFKRLPYKQLTRHQNLFtlikqkprtqlttpssVLIKVsapssssssspcASLSSIYPPSVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDECILNTansiglkeiprYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAAlnnigpkkmklHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ
Low Complexity Region (SEG)
MSFFSLGHFFKRLPYKQLTRHQNLFTLIKQKPRTQLTTPssvlikvsapssssssspcaslssiYPPSVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNVQATNIILNPGLAFGTGEHATTKlcllllrslIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ
Disordered region (IsUnstruct)
**FFSLGHFFKRLPYKQLTRHQNLFTLIK***************************************VESPYLLVRICCQKHALDMFSEAPLCFGA*****************EIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPD********ERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI****
Disordered Region (DISOPRED)
******GHFFKRLPYKQLT************************************************SVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ
Disordered Region (DISEMBL)
MSFFSLGHFFKRLPYKQLTRHQNLFTLIKQKPRTQLTTPSSVLIK******************IYPPSVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ
Disordered Region (DISPRO)
*SFFSLGHFFKRLPYKQLTRHQNLFTLIKQKPRTQLTTPSSVLIKVS****************IYPPSVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFFSLGHFFKRLPYKQLTRHQNLFTLIKQKPRTQLTTPSSVLIKVSAPSSSSSSSPCASLSSIYPPSVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
A4JBD7	300	Ribosomal protein L11 met	yes	no	0.681	0.743	0.295	2e-28
Q478R6	296	Ribosomal protein L11 met	yes	no	0.489	0.540	0.367	5e-28
A0K4C9	300	Ribosomal protein L11 met	yes	no	0.681	0.743	0.305	6e-28
Q1BZC1	300	Ribosomal protein L11 met	yes	no	0.681	0.743	0.305	6e-28
B1JVC0	300	Ribosomal protein L11 met	yes	no	0.681	0.743	0.302	9e-28
A9AI41	300	Ribosomal protein L11 met	yes	no	0.681	0.743	0.298	1e-27
B4E5V2	300	Ribosomal protein L11 met	yes	no	0.681	0.743	0.305	1e-27
Q0BIF9	300	Ribosomal protein L11 met	yes	no	0.681	0.743	0.298	2e-27
B1YSW5	300	Ribosomal protein L11 met	yes	no	0.681	0.743	0.298	2e-27
Q3SMB4	296	Ribosomal protein L11 met	yes	no	0.694	0.766	0.317	4e-27

>sp|A4JBD7|PRMA_BURVG Ribosomal protein L11 methyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=prmA PE=3 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 133/291 (45%), Gaps = 68/291 (23%)

Query: 75  LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
           LV    ++HA +  S+A L  GA S SV++ D D  +         + PE          
Sbjct: 6   LVVELAREHA-EALSDALLDLGALSVSVEDADADTPDEQPLFGEPGLVPERTAWQHSRVV 64

Query: 125 ---CKDVDECIL--NTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
                D++  +L    AN IG+ + P+++V+  E+ +W++  Q  F P+ + + +W+VP 
Sbjct: 65  ALLSPDLEPAVLLAAAANEIGIADTPKFDVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124

Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
           W    +  A  + L+PGLAFGTG H TT+LC+  L   +K G+  LDYG           
Sbjct: 125 WHDAPDPDALILELDPGLAFGTGSHPTTRLCMEWLEQTVKPGQSVLDYGCGSGILAILAR 184

Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
                    +DIDPQ ++SA QN+  N+           PD                   
Sbjct: 185 KCGADPVIGIDIDPQAVESARQNSERNHADVTYGLPDACPDG------------------ 226

Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
                      E+D+V+ANIL NPL  +A  + S  KPG  + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266

Methylates ribosomal protein L11.
Burkholderia vietnamiensis (strain G4 / LMG 22486) (taxid: 269482)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q478R6|PRMA_DECAR Ribosomal protein L11 methyltransferase OS=Dechloromonas aromatica (strain RCB) GN=prmA PE=3 SV=1

 Score =  125 bits (313), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 102/212 (48%), Gaps = 52/212 (24%)

Query: 139 IGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLA 194
           IGL EIP Y V+   + NW++  Q  F P+ V++ LWIVP W    +  A N+IL+PG+A
Sbjct: 83  IGLSEIPAYSVENVAEQNWVQLTQSQFDPIRVSERLWIVPSWHETPDPAAVNLILDPGMA 142

Query: 195 FGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKS 235
           FGTG H TT+LCL  L   +      LDYG                    VDIDPQ +++
Sbjct: 143 FGTGSHPTTRLCLEWLERNVSEACTVLDYGCGSGILAIAAARLGAGHVAGVDIDPQAVEA 202

Query: 236 AHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIAN 295
           A  NA  N +        L  D   P +                        EYDVV+AN
Sbjct: 203 ARANAERNGV------TALFADSATPVA-----------------------GEYDVVVAN 233

Query: 296 ILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
           IL NPL  LA  I ++ +PG  + +SGIL EQ
Sbjct: 234 ILSNPLRVLAPAICAHVRPGGKLALSGILREQ 265

Methylates ribosomal protein L11.

Dechloromonas aromatica (strain RCB) (taxid: 159087)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A0K4C9|PRMA_BURCH Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=prmA PE=3 SV=1

 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 135/291 (46%), Gaps = 68/291 (23%)

Query: 75  LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
           LV    ++HA +  S+A L  GA S SV++ D D  +         + P+          
Sbjct: 6   LVVELAREHA-EALSDALLDLGALSVSVEDADADTPDEQPLFGEPGLVPDRTAWQHSRVV 64

Query: 125 ---CKDVDECIL--NTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
                D +  +L    AN IGL E P++ V+  E+ +W++  Q  F P+ + + +W+VP 
Sbjct: 65  ALLSADHEPAVLLAAAANEIGLAETPKFVVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124

Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
           W    +  A  + L+PGLAFGTG H TT+LC+  L   +K G+  LDYG           
Sbjct: 125 WHDAPDPDALVLELDPGLAFGTGSHPTTRLCMEWLEQSVKPGQSVLDYGCGSGILAILAK 184

Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
                    +DIDPQ ++SA QN+  N    +    + +PD           DG      
Sbjct: 185 KCGANPVIGIDIDPQAVESARQNSERN----RAEVTYGLPDAC--------PDG------ 226

Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
                      E+D+V+ANIL NPL  +A  + S  KPG  + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266

Methylates ribosomal protein L11.

Burkholderia cenocepacia (strain HI2424) (taxid: 331272)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q1BZC1|PRMA_BURCA Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=prmA PE=3 SV=1

 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 135/291 (46%), Gaps = 68/291 (23%)

Query: 75  LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
           LV    ++HA +  S+A L  GA S SV++ D D  +         + P+          
Sbjct: 6   LVVELAREHA-EALSDALLDLGALSVSVEDADADTPDEQPLFGEPGLVPDRTAWQHSRVV 64

Query: 125 ---CKDVDECIL--NTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
                D +  +L    AN IGL E P++ V+  E+ +W++  Q  F P+ + + +W+VP 
Sbjct: 65  ALLSADHEPAVLLAAAANEIGLAETPKFVVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124

Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
           W    +  A  + L+PGLAFGTG H TT+LC+  L   +K G+  LDYG           
Sbjct: 125 WHDAPDPDALVLELDPGLAFGTGSHPTTRLCMEWLEQSVKPGQSVLDYGCGSGILAILAK 184

Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
                    +DIDPQ ++SA QN+  N    +    + +PD           DG      
Sbjct: 185 KCGANPVIGIDIDPQAVESARQNSERN----RAEVTYGLPDAC--------PDG------ 226

Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
                      E+D+V+ANIL NPL  +A  + S  KPG  + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266

Methylates ribosomal protein L11.

Burkholderia cenocepacia (strain AU 1054) (taxid: 331271)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B1JVC0|PRMA_BURCC Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=prmA PE=3 SV=1

 Score =  124 bits (311), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 134/291 (46%), Gaps = 68/291 (23%)

Query: 75  LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
           LV    ++HA +  S+A L  GA S SV++ D D  +         + P+          
Sbjct: 6   LVVELAREHA-EALSDALLDLGALSVSVEDADADTPDEQPLFGEPGLVPDRTAWQHSRVV 64

Query: 125 ---CKDVDECIL--NTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
                D +  +L    AN IGL E P++ V+  E+ +W++  Q  F P+ + + +W+VP 
Sbjct: 65  ALLSADHEPAVLLAAAANEIGLAETPKFVVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124

Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
           W    +  A  + L+PGLAFGTG H TT+LC+  L   +K G+  LDYG           
Sbjct: 125 WHDAPDPDALVLELDPGLAFGTGSHPTTRLCMEWLEQSVKPGQSVLDYGCGSGILAILAK 184

Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
                    +DIDPQ ++SA QN+  N    +    + +PD   P               
Sbjct: 185 KCGANPVIGIDIDPQAVESARQNSERN----RAEVTYGLPD-ACPEG------------- 226

Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
                      E+D+V+ANIL NPL  +A  + S  KPG  + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266

Methylates ribosomal protein L11.

Burkholderia cenocepacia (strain MC0-3) (taxid: 406425)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A9AI41|PRMA_BURM1 Ribosomal protein L11 methyltransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=prmA PE=3 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 135/291 (46%), Gaps = 68/291 (23%)

Query: 75  LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
           LV    ++HA +  S+A L  GA S SV++ D D  +         + PE          
Sbjct: 6   LVVELAREHA-EALSDALLELGALSVSVEDADADTPDEQPLFGEPGLVPERTAWQHSRVI 64

Query: 125 ---CKDVDECIL--NTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
                D +  +L    AN IGL   P+++V+  E+ +W++  Q  F P+ + + +W+VP 
Sbjct: 65  ALLSPDHEPAVLLAAAANEIGLDATPKFDVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124

Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
           W    +  A  + L+PGLAFGTG H TT+LC+  L   ++ G+  LDYG           
Sbjct: 125 WHDAPDPDALVLELDPGLAFGTGSHPTTRLCMEWLEQSVQPGQSVLDYGCGSGILAILAK 184

Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
                    +DIDPQ ++SA QN+  N    +    + +PD   P+              
Sbjct: 185 KCGANPVVGIDIDPQAVESARQNSERN----RAEVTYGLPD-ACPAG------------- 226

Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
                      E+D+V+ANIL NPL  +A  + S  KPG  + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266

Methylates ribosomal protein L11.

Burkholderia multivorans (strain ATCC 17616 / 249) (taxid: 395019)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B4E5V2|PRMA_BURCJ Ribosomal protein L11 methyltransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=prmA PE=3 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 135/291 (46%), Gaps = 68/291 (23%)

Query: 75  LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
           LV    ++HA +  S+A L  GA S SV++ D D  +         + P+          
Sbjct: 6   LVVELAREHA-EALSDALLDLGALSVSVEDADADTPDEQPLFGEPGLVPDRTAWQHSRVV 64

Query: 125 ---CKDVDECILNTA--NSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
                D +  +L  A  N IGL E P++ V+  E+ +W++  Q  F P+ + + +W+VP 
Sbjct: 65  ALLSADHEPAVLLAAATNEIGLAETPQFVVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124

Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
           W    +  A  + L+PGLAFGTG H TT+LC+  L   +K G+  LDYG           
Sbjct: 125 WHDAPDPDALVLELDPGLAFGTGSHPTTRLCMEWLEQSVKPGQSVLDYGCGSGILAILAK 184

Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
                    +DIDPQ ++SA QN+  N    +    + +PD           DG      
Sbjct: 185 KCGANPVIGIDIDPQAVESARQNSERN----RAEVTYGLPDAC--------PDG------ 226

Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
                      E+D+V+ANIL NPL  +A  + S  KPG  + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266

Methylates ribosomal protein L11.

Burkholderia cepacia (strain J2315 / LMG 16656) (taxid: 216591)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q0BIF9|PRMA_BURCM Ribosomal protein L11 methyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=prmA PE=3 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 136/291 (46%), Gaps = 68/291 (23%)

Query: 75  LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
           LV    ++HA +  S+A L  GA S SV++ D D  +         + P+          
Sbjct: 6   LVVELAREHA-EALSDALLELGALSVSVEDADADTPDEQPLFGEPGLVPDRTAWQRSRVI 64

Query: 125 ---CKDVDECILNTA--NSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
                D +  +L  A  N IG+ E P+++V+  E+ +W++  Q  F P+ + + +W+VP 
Sbjct: 65  ALLSPDHEPAVLLAAAVNDIGVTETPKFDVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124

Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
           W    +  A  + L+PGLAFGTG H TT+LC+  L   +K G+  LDYG           
Sbjct: 125 WHDAPDPDALILELDPGLAFGTGSHPTTRLCMEWLEQSVKPGQSVLDYGCGSGILAILAR 184

Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
                    +DIDPQ ++SA QN+  N+        + +PD   P+              
Sbjct: 185 KCGANPVVGIDIDPQAVESARQNSERNH----AEVTYGLPD-ACPAG------------- 226

Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
                      E+D+V+ANIL NPL  +A  + S  KPG  + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266

Methylates ribosomal protein L11.

Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (taxid: 339670)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B1YSW5|PRMA_BURA4 Ribosomal protein L11 methyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=prmA PE=3 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 136/291 (46%), Gaps = 68/291 (23%)

Query: 75  LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPE---------- 124
           LV    ++HA +  S+A L  GA S SV++ D D  +         + P+          
Sbjct: 6   LVVELAREHA-EALSDALLELGALSVSVEDADADTPDEQPLFGEPGLVPDRTAWQHSRVI 64

Query: 125 ---CKDVDECILNTA--NSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPE 179
                D +  +L  A  N IG+ E P+++V+  E+ +W++  Q  F P+ + + +W+VP 
Sbjct: 65  ALLSPDHEPAVLLAAAVNDIGVTETPKFDVREVEEQDWVRLTQSQFEPIPIGERIWVVPS 124

Query: 180 W----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG----------- 224
           W    +  A  + L+PGLAFGTG H TT+LC+  L   +K G+  LDYG           
Sbjct: 125 WHDAPDPDALILELDPGLAFGTGSHPTTRLCMEWLEQSVKPGQSVLDYGCGSGILAILAR 184

Query: 225 --------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
                    +DIDPQ ++SA QN+  N+        + +PD   P+              
Sbjct: 185 KCGANPVVGIDIDPQAVESARQNSERNH----AEVTYGLPD-ACPAG------------- 226

Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
                      E+D+V+ANIL NPL  +A  + S  KPG  + +SG+L+ Q
Sbjct: 227 -----------EFDIVVANILSNPLKLMASMLASKVKPGGRIALSGVLARQ 266

Methylates ribosomal protein L11.

Burkholderia ambifaria (strain MC40-6) (taxid: 398577)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q3SMB4|PRMA_THIDA Ribosomal protein L11 methyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=prmA PE=3 SV=1

 Score =  122 bits (306), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 135/293 (46%), Gaps = 66/293 (22%)

Query: 72  PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHD----------NDADENSDEIYIDSI 121
           P+  VRI       +  S+A +  GA S S+++ D           + D  S E++  SI
Sbjct: 2   PWQSVRILVDSVQAEPLSDALMEAGALSVSLEDADAGTVDETPLFGEPDHPSAELWPHSI 61

Query: 122 ----FPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIV 177
                    DV E +   A   G+     Y V+   + +W++  Q  F P+ ++  LWIV
Sbjct: 62  AVVLLEADADVAETLRAAAAQAGVAAPLDYTVETVAEQDWVRLTQSQFDPIPISARLWIV 121

Query: 178 PEW----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYG--------- 224
           P W    + +A N+ L+PGLAFGTG H TT+LCL  L + ++GGE  LDYG         
Sbjct: 122 PTWHEAPDSRALNLKLDPGLAFGTGSHPTTRLCLRWLDANLRGGETLLDYGCGSGILAIA 181

Query: 225 ----------TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY 274
                      VDIDPQ + ++  NAALN +           D  F         G+   
Sbjct: 182 AAKLGARRVEGVDIDPQAVSASRDNAALNEV-----------DAHF---------GLPGE 221

Query: 275 LSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
           L++          EYDVV+ANIL NPL  +A  +    + G  + +SGIL+EQ
Sbjct: 222 LAAG---------EYDVVVANILTNPLKAMAPLLAGRVRSGGSLVLSGILAEQ 265

Methylates ribosomal protein L11.

Thiobacillus denitrificans (strain ATCC 25259) (taxid: 292415)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
225461518	367	PREDICTED: ribosomal protein L11 methylt	0.908	0.809	0.530	7e-79
356514667	381	PREDICTED: ribosomal protein L11 methylt	0.795	0.682	0.536	2e-77
388507954	397	unknown [Lotus japonicus]	0.773	0.637	0.551	2e-73
449507116	390	PREDICTED: ribosomal protein L11 methylt	0.737	0.617	0.518	4e-71
449456729	390	PREDICTED: ribosomal protein L11 methylt	0.737	0.617	0.518	5e-71
297792815	368	hypothetical protein ARALYDRAFT_495472 [	0.899	0.798	0.512	1e-69
15238878	371	ribosomal protein L11 methyltransferase-	0.923	0.814	0.502	7e-69
224117126	322	predicted protein [Populus trichocarpa]	0.660	0.670	0.645	5e-68
255584405	373	RNA methyltransferase, putative [Ricinus	0.865	0.758	0.462	3e-64
413949759	428	hypothetical protein ZEAMMB73_385495 [Ze	0.776	0.593	0.469	1e-62

>gi|225461518|ref|XP_002282613.1| PREDICTED: ribosomal protein L11 methyltransferase [Vitis vinifera] gi|302142971|emb|CBI20266.3| unnamed protein product [Vitis vinifera]

 Score =  300 bits (768), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 185/349 (53%), Positives = 222/349 (63%), Gaps = 52/349 (14%)

Query: 8   HFFKRLPYKQLTRHQNLFTLIKQKPRTQL--TTPSSV----LIKVSAPSSSSSSSPCASL 61
           HFFK L +    R       I  +PR  +    PS +    L  V    S+SSS P    
Sbjct: 5   HFFKHLSFISSWR-------ISSQPRRLIHGVFPSPLSQRRLSSVFRNFSTSSSLPTTH- 56

Query: 62  SSIYPPSVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSI 121
                 S+ SPY  VRI C K + DM SEA LCFGASSTS+DE    +DE +D+I IDSI
Sbjct: 57  ------SLTSPYFSVRISCPKDSADMLSEALLCFGASSTSMDEQG--SDEGNDKICIDSI 108

Query: 122 FPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW- 180
           F + +DVD CI + A+S+GLKE+P YEV++GEQ +WIKK QESF PVEVT+GLWIVPEW 
Sbjct: 109 FSDRQDVDVCISHAADSVGLKELPSYEVRVGEQYDWIKKTQESFCPVEVTEGLWIVPEWR 168

Query: 181 ---NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT------------ 225
              +  ATNIILNPG AFGTGEH TTKLCLLLL  LIKGGE FLDYGT            
Sbjct: 169 TPPDAHATNIILNPGFAFGTGEHPTTKLCLLLLHGLIKGGERFLDYGTGSGILAIAALKF 228

Query: 226 -------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSH 278
                  +D+DPQ I +A QNAALN I P KM+L LVP        + R   +VE  S +
Sbjct: 229 GAASSVGIDVDPQAITAATQNAALNKISPNKMQLTLVPP-------DGRTHEVVEGQSPN 281

Query: 279 KIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
            +   +E+E +D+VIANILLNPLL LAD IVS+AKPGAVV +SGI+SEQ
Sbjct: 282 SMGVTTESESFDIVIANILLNPLLDLADDIVSHAKPGAVVAVSGIISEQ 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514667|ref|XP_003526025.1| PREDICTED: ribosomal protein L11 methyltransferase-like [Glycine max]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 163/304 (53%), Positives = 206/304 (67%), Gaps = 44/304 (14%)

Query: 47  SAPSSSSSSSPCASLSSIYPPSVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHD 106
           +A  S++SSS   S +S+ P    +PY  V I C K   D+ +EA LCFGASS S+D+  
Sbjct: 60  NAKFSTASSSQTLSDTSLAP---RAPYTSVLIHCPKDTADVLAEALLCFGASSVSMDQ-- 114

Query: 107 NDADENSDEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFH 166
           +D  +++DEI I SIF E +D++  I + A+SIGLKEIPRYEVK+ ++ +W+K++QES H
Sbjct: 115 DDVSQSTDEICISSIFHEVEDINVSISHAADSIGLKEIPRYEVKIDDEEDWMKRSQESLH 174

Query: 167 PVEVTKGLWIVPEW----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLD 222
           PV+VT+GLW+VP+W    +VQATNII+NPGLAFGTGEHATTKLCLLLL   IKGGE  LD
Sbjct: 175 PVQVTEGLWVVPKWCTPPDVQATNIIVNPGLAFGTGEHATTKLCLLLLHGCIKGGEHILD 234

Query: 223 YGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSS 263
           YGT                   VD+D + I SA QNA LNNIG  KM+LHLV  +T  SS
Sbjct: 235 YGTGTGILAIAALKFGAAFAVGVDVDSEAIASASQNAYLNNIGQDKMQLHLVASKTSSSS 294

Query: 264 MNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 323
            N+   G                E++DVV+ANILLNPLL LAD I+S+AKPGAVVG+SGI
Sbjct: 295 KNDLTFG----------------EKFDVVVANILLNPLLDLADQIISHAKPGAVVGLSGI 338

Query: 324 LSEQ 327
           LSEQ
Sbjct: 339 LSEQ 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507954|gb|AFK42043.1| unknown [Lotus japonicus]

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 155/281 (55%), Positives = 192/281 (68%), Gaps = 28/281 (9%)

Query: 72  PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDEC 131
           PYL V I C K + D+ +EA LCFGA+S S+D+  +D  +  DEI I SIF E +D++  
Sbjct: 89  PYLSVLIHCPKDSADVLAEALLCFGATSVSIDQ--DDVCQRRDEICISSIFSEGEDINVG 146

Query: 132 ILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNV------QAT 185
           I + A+SIGLKEIPRYEVK+ E+ NW+K+AQESF PVEVTK LW+VP+W+       +AT
Sbjct: 147 ISHAADSIGLKEIPRYEVKVNEE-NWMKRAQESFCPVEVTKDLWVVPKWSAPRPPDDKAT 205

Query: 186 NIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------V 226
           NIIL+PGLAFGTGEHATTKLCLLLLR  +KGGE  LDYGT                   V
Sbjct: 206 NIILDPGLAFGTGEHATTKLCLLLLRGCVKGGEYILDYGTGTGILAIAALKFGAAFAVGV 265

Query: 227 DIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISET 286
           DID   I SA +NAALNNI P KM+L L+      S   +   G+VE   + +I+ ++  
Sbjct: 266 DIDSDAIASASENAALNNIEPDKMQLLLIASDASSSFKADSKSGVVEGERTCEIQTVTGQ 325

Query: 287 EEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
            +YD VIAN+LLNPLL LAD IVS AKPGAV+G+SGILSEQ
Sbjct: 326 YKYDAVIANMLLNPLLDLADQIVSCAKPGAVIGLSGILSEQ 366

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507116|ref|XP_004162937.1| PREDICTED: ribosomal protein L11 methyltransferase-like [Cucumis sativus]

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 154/297 (51%), Positives = 188/297 (63%), Gaps = 56/297 (18%)

Query: 73  YLLVRICCQKHALDMFSEAPLCFGASSTSVDEH-------------------DNDADENS 113
           YL VRI C K  +D  SEA L FGASSTSVDE                      DA+ + 
Sbjct: 71  YLSVRIRCGKDIVDSLSEALLSFGASSTSVDEDCACGSSQEAQEYLSLPLSCPCDAENDG 130

Query: 114 DEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKG 173
             IY+D+IFP+ +DV +CI   A+S+GLKE P YEV + +Q +W+KK+QESF PV+V +G
Sbjct: 131 VLIYVDTIFPDGQDVSKCISYAADSVGLKESPFYEVTIDDQYDWLKKSQESFKPVKVMEG 190

Query: 174 LWIVPEW----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT---- 225
           LWIVPEW    +V ATNIIL+PGLAFG GEH TTKLCL LL SL+KGGE FLDYGT    
Sbjct: 191 LWIVPEWTTPSDVHATNIILHPGLAFGMGEHPTTKLCLQLLHSLVKGGEYFLDYGTGTGV 250

Query: 226 ---------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDG 270
                          +D+DPQ I+S  +NAALNNI P+K++LHLVP              
Sbjct: 251 LAIASLKFGAAFSVGIDVDPQAIESGQKNAALNNIEPEKLQLHLVPSD------------ 298

Query: 271 IVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
           + EY +      IS  E +D+VIANIL NPLL LAD++VSYAKP AVV +SGILSEQ
Sbjct: 299 LAEYKNCEAY--ISGKENFDIVIANILQNPLLDLADYVVSYAKPEAVVALSGILSEQ 353

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456729|ref|XP_004146101.1| PREDICTED: ribosomal protein L11 methyltransferase-like [Cucumis sativus]

 Score =  274 bits (700), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 154/297 (51%), Positives = 188/297 (63%), Gaps = 56/297 (18%)

Query: 73  YLLVRICCQKHALDMFSEAPLCFGASSTSVDEH-------------------DNDADENS 113
           YL VRI C K  +D  SEA L FGASSTSVDE                      DA+ + 
Sbjct: 71  YLSVRIRCGKDIVDSLSEALLSFGASSTSVDEDCACGSSQEAQEYLSLPLSCPCDAENDG 130

Query: 114 DEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKG 173
             IY+D+IFP+ +DV +CI   A+S+GLKE P YEV + +Q +W+KK+QESF PV+V +G
Sbjct: 131 VLIYVDTIFPDGQDVSKCISYAADSVGLKESPFYEVTIDDQYDWLKKSQESFKPVKVMEG 190

Query: 174 LWIVPEW----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT---- 225
           LWIVPEW    +V ATNIIL+PGLAFG GEH TTKLCL LL SL+KGGE FLDYGT    
Sbjct: 191 LWIVPEWTTPSDVHATNIILHPGLAFGMGEHPTTKLCLQLLHSLVKGGEYFLDYGTGTGV 250

Query: 226 ---------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDG 270
                          +D+DPQ I+S  +NAALNNI P+K++LHLVP              
Sbjct: 251 LAIASLKFGAAFSVGIDVDPQAIESGQKNAALNNIEPEKLQLHLVPSD------------ 298

Query: 271 IVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
           + EY +      IS  E +D+VIANIL NPLL LAD++VSYAKP AVV +SGILSEQ
Sbjct: 299 LAEYKNCEAY--ISGKENFDIVIANILQNPLLDLADYVVSYAKPEAVVALSGILSEQ 353

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792815|ref|XP_002864292.1| hypothetical protein ARALYDRAFT_495472 [Arabidopsis lyrata subsp. lyrata] gi|297310127|gb|EFH40551.1| hypothetical protein ARALYDRAFT_495472 [Arabidopsis lyrata subsp. lyrata]

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 181/353 (51%), Positives = 219/353 (62%), Gaps = 59/353 (16%)

Query: 8   HFFKRLPYKQLTRHQNLFTLIKQKPR-----TQLTTPSSVLIKVSAPSSSSSSSPCASLS 62
           +F K  P K L+RH     +++ + R     T  T PSS  I  S   SSSSSS C +  
Sbjct: 5   NFIKHFPCKNLSRH-----ILRDRVRPLCLFTFSTPPSSFSITASLSYSSSSSSSCFTDE 59

Query: 63  SIYPPSVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEH-DNDADENSD----EIY 117
           S       +PYL VRI C KH LD FSEA LCFGASS +VDE  D DA   S     EI 
Sbjct: 60  SF-----TAPYLSVRIHCPKHVLDPFSEALLCFGASSVTVDEDIDEDAASGSSLVSKEIC 114

Query: 118 IDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIV 177
           I+ IFP  ++V  CI   ANSIGLKEIP+++V++G++ +WI K QE F PVE+ + LWIV
Sbjct: 115 IELIFPVHEEVKMCISQAANSIGLKEIPKFKVEIGDEQDWITKNQELFQPVEIAEMLWIV 174

Query: 178 PEWN----VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------- 225
           PEW      +A NIILNPG AFGTGEH TTKLCLLLL+SLIKGGE FLDYGT        
Sbjct: 175 PEWTSPPVTEAVNIILNPGFAFGTGEHPTTKLCLLLLQSLIKGGEAFLDYGTGSGILAIA 234

Query: 226 -----------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY 274
                      VDIDP  IKSA  NAALNNI  +K++LHL P     SS    +      
Sbjct: 235 ALKFGAASSVGVDIDPLAIKSASHNAALNNIPLEKLELHLAPSED--SSSGREI------ 286

Query: 275 LSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
                +R     +++DVVIANILLNP+++LADHI+S+AKPGA +GISGILSEQ
Sbjct: 287 ----PLR----KQQFDVVIANILLNPVMELADHILSFAKPGATIGISGILSEQ 331

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238878|ref|NP_200203.1| ribosomal protein L11 methyltransferase-like protein [Arabidopsis thaliana] gi|10177254|dbj|BAB10722.1| ribosomal protein L11 methyltransferase-like protein [Arabidopsis thaliana] gi|332009046|gb|AED96429.1| ribosomal protein L11 methyltransferase-like protein [Arabidopsis thaliana]

 Score =  266 bits (681), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 175/348 (50%), Positives = 218/348 (62%), Gaps = 46/348 (13%)

Query: 8   HFFKRLPYKQLTRHQNLFTLIKQKPRTQLTTPSSVLIKVSAPSSSSSSSPCASLSSIYPP 67
           +F K  P K L+RH  +    + +P    T+ +         S S+SSS  +S S     
Sbjct: 5   NFIKHFPCKNLSRH--ILRDSRVRPLCFFTSSTPPSSFSIFASLSTSSSSSSSSSCFTDE 62

Query: 68  SVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADEN-----SDEIYIDSIF 122
           S  +PYL VRI C KHALD FSEA LCFGASS +VDE   +AD++     S EI I+SIF
Sbjct: 63  SFAAPYLSVRIHCPKHALDPFSEALLCFGASSVAVDEAIEEADQDETSLASKEICIESIF 122

Query: 123 PECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN- 181
           P  ++V  CI   ANSIGLKEIP+++V+MG++ +WI K Q+ F PVE+ + LWIVPEW  
Sbjct: 123 PVHEEVKMCISQAANSIGLKEIPKFKVEMGDELDWITKNQDLFQPVEIAERLWIVPEWTS 182

Query: 182 ---VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT------------- 225
               +A NIILNPG AFGTGEH TTKLCLLLL+SLIKGGE FLDYGT             
Sbjct: 183 PPVAEAVNIILNPGFAFGTGEHPTTKLCLLLLQSLIKGGEAFLDYGTGSGILAIAALKFG 242

Query: 226 ------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHK 279
                 VDIDP  I SA  NAALNNI  +K++LHL P               +E  SS +
Sbjct: 243 AASSVGVDIDPLAINSAIHNAALNNIPLEKLELHLAP---------------IENSSSGR 287

Query: 280 IRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
              + + E++DVVIANILLNP++ LADHI+S+ KPGA +GISGILSEQ
Sbjct: 288 EIPL-QKEQFDVVIANILLNPVMNLADHILSFVKPGATIGISGILSEQ 334

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117126|ref|XP_002317484.1| predicted protein [Populus trichocarpa] gi|222860549|gb|EEE98096.1| predicted protein [Populus trichocarpa]

 Score =  264 bits (674), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 155/240 (64%), Positives = 175/240 (72%), Gaps = 24/240 (10%)

Query: 111 ENSDEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEV 170
           E  D + IDSIFPE +DVD C+   ANSIGLKE P YEV +G+Q  W++K QESFHPVEV
Sbjct: 11  EPYDNVCIDSIFPEFEDVDMCLSQAANSIGLKETPPYEVNLGDQYEWVRKTQESFHPVEV 70

Query: 171 TKGLWIVPEW----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT- 225
           T+GLWIVPEW    +VQATNIILNPGLAFGTGEH TTKLCLLLL+ LIKG ELFLDYGT 
Sbjct: 71  TEGLWIVPEWRSPPDVQATNIILNPGLAFGTGEHPTTKLCLLLLKKLIKGEELFLDYGTG 130

Query: 226 ------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNER 267
                              DIDPQ I SA  NA LN+IGP+ M+LHLVP +T  SS++ R
Sbjct: 131 SGVLAIAALKFGAALSVGFDIDPQAIMSARHNATLNSIGPETMELHLVPGKTC-SSLDGR 189

Query: 268 VDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
            D +V+  S      IS TE+YDVVIANILLNPLL LADHIVSYAKP AVVGISGI+SEQ
Sbjct: 190 EDEMVKEQSCCGTGVISGTEKYDVVIANILLNPLLDLADHIVSYAKPRAVVGISGIISEQ 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584405|ref|XP_002532935.1| RNA methyltransferase, putative [Ricinus communis] gi|223527299|gb|EEF29451.1| RNA methyltransferase, putative [Ricinus communis]

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 156/337 (46%), Positives = 200/337 (59%), Gaps = 54/337 (16%)

Query: 8   HFFKRLPYKQLTRHQNLFTLIKQ-KPRTQ-LTTPSSVLIKVSAPSSSSSSSP--CASLSS 63
           HFFK L Y  L+R   + + +   KP  + ++ P+S+L   + P SS  +    C+S  +
Sbjct: 5   HFFKHLSY-TLSRGSFIVSTVSNLKPICRNVSKPNSLLFANNIPISSFCAYVPFCSSHHT 63

Query: 64  IYPPSVESP------------YLLVRICC-QKHALDMFSEAPLCFGASSTSVDEHDNDAD 110
            Y  +                YL VRI C  K   DM SEA LCFGASS S DE D+   
Sbjct: 64  DYSSTATHTHSSASSSPSSSAYLSVRIRCPNKDVADMLSEALLCFGASSVSTDEPDDS-- 121

Query: 111 ENSDEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEV 170
           ++S+EI +DSIFPEC+DVD C+   A+S+GLK+IP+YEVKMGEQ +W++K QESF PVEV
Sbjct: 122 DSSNEICMDSIFPECQDVDACLSQAADSVGLKKIPKYEVKMGEQYDWVRKTQESFLPVEV 181

Query: 171 TKGLWIVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDP 230
            +GLWIVPEW           G A   G                           +D+DP
Sbjct: 182 AEGLWIVPEWRSAPF------GAAMAVG---------------------------LDVDP 208

Query: 231 QVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYD 290
           Q IKSA  NA LNNIGP+ M+L LVP +T    M+ER +  ++   S K   +SE+E+YD
Sbjct: 209 QAIKSARHNADLNNIGPETMELLLVPSKTCSPLMDERTNEALKDGPSEKAL-VSESEKYD 267

Query: 291 VVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
           VVIANILLNPLL LADHIVSYAKPGA+V +SGI+SEQ
Sbjct: 268 VVIANILLNPLLDLADHIVSYAKPGAIVAVSGIISEQ 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413949759|gb|AFW82408.1| hypothetical protein ZEAMMB73_385495 [Zea mays]

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/279 (46%), Positives = 174/279 (62%), Gaps = 25/279 (8%)

Query: 72  PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDEC 131
           PYL VRI C++H +++ SEA L FGASS +VD+  +DA EN DEI I S++ + +DVD  
Sbjct: 120 PYLSVRIRCRRHDVEVLSEALLSFGASSVTVDDI-SDA-ENLDEISITSLYADGEDVDSS 177

Query: 132 ILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNV----QATNI 187
           + + A S G+   P YE  +G+QC+WI   QE++   EV  GLW+VP+W      +ATNI
Sbjct: 178 VRSAARSAGVNYSPVYETSVGKQCDWIATVQETYESTEVADGLWVVPKWRTPPDPEATNI 237

Query: 188 ILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDI 228
           I++PGLAFG GEH TTKLCLL LR +IKGGE  LDYGT                   +DI
Sbjct: 238 IIDPGLAFGMGEHPTTKLCLLFLREVIKGGECVLDYGTGTGVLGIAALKMGATQSTGIDI 297

Query: 229 DPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEE 288
           DPQ I SA +N  LN +   +M ++LV     PS +   +D   E+ S++ +        
Sbjct: 298 DPQAIASASENLLLNGLHSNQMPVYLVSTNAQPSCLPSFIDKSEEHHSTNNLDLKLSRGT 357

Query: 289 YDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
           YDVV ANILLNPLL+L + IV YAKPG ++ +SGIL EQ
Sbjct: 358 YDVVAANILLNPLLELVEDIVGYAKPGGIIAVSGILEEQ 396

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
TAIR|locus:2154739	371	AT5G53920 [Arabidopsis thalian	0.969	0.854	0.438	4.3e-61
TIGR_CMR|CPS_0540	293	CPS_0540 "ribosomal protein L1	0.752	0.839	0.284	1.9e-19
TIGR_CMR|VC_0293	295	VC_0293 "ribosomal protein L11	0.532	0.589	0.302	2e-17
UNIPROTKB|P0A8T1	293	prmA "methyltransferase for 50	0.724	0.808	0.284	7.9e-17
TIGR_CMR|SO_0395	293	SO_0395 "ribosomal protein L11	0.752	0.839	0.269	1.4e-15
TIGR_CMR|BA_4537	312	BA_4537 "ribosomal protein L11	0.623	0.653	0.258	1.4e-10
TIGR_CMR|GSU_0447	299	GSU_0447 "ribosomal protein L1	0.730	0.799	0.244	9.3e-08
TIGR_CMR|CHY_0417	305	CHY_0417 "ribosomal protein L1	0.636	0.681	0.262	5e-07
TIGR_CMR|CJE_1260	281	CJE_1260 "ribosomal protein L1	0.324	0.377	0.258	0.00012
TIGR_CMR|SPO_3120	292	SPO_3120 "ribosomal protein L1	0.119	0.133	0.487	0.00015

TAIR|locus:2154739 AT5G53920 [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 146/333 (43%), Positives = 189/333 (56%)

Query:     8 HFFKRLPYKQLTRHQNLFTLIKQKPRTQLTTPXXXXXXXXXXXXXXXXXXXXXXXXXYPP 67
             +F K  P K L+RH  +    + +P    T+                             
Sbjct:     5 NFIKHFPCKNLSRH--ILRDSRVRPLCFFTSSTPPSSFSIFASLSTSSSSSSSSSCFTDE 62

Query:    68 SVESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADEN-----SDEIYIDSIF 122
             S  +PYL VRI C KHALD FSEA LCFGASS +VDE   +AD++     S EI I+SIF
Sbjct:    63 SFAAPYLSVRIHCPKHALDPFSEALLCFGASSVAVDEAIEEADQDETSLASKEICIESIF 122

Query:   123 PECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN- 181
             P  ++V  CI   ANSIGLKEIP+++V+MG++ +WI K Q+ F PVE+ + LWIVPEW  
Sbjct:   123 PVHEEVKMCISQAANSIGLKEIPKFKVEMGDELDWITKNQDLFQPVEIAERLWIVPEWTS 182

Query:   182 ---VQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTVD--IDPQVIKSA 236
                 +A NIILNPG AFGTGEH TTK         IKGGE FLDYGT    +    +K  
Sbjct:   183 PPVAEAVNIILNPGFAFGTGEHPTTKLCLLLLQSLIKGGEAFLDYGTGSGILAIAALKFG 242

Query:   237 HQNAALNNIGPKKMK--LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIA 294
               ++   +I P  +   +H       P    E     +E  SS +   + + E++DVVIA
Sbjct:   243 AASSVGVDIDPLAINSAIHNAALNNIPLEKLELHLAPIENSSSGREIPLQK-EQFDVVIA 301

Query:   295 NILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
             NILLNP++ LADHI+S+ KPGA +GISGILSEQ
Sbjct:   302 NILLNPVMNLADHILSFVKPGATIGISGILSEQ 334

GO:0005737 "cytoplasm" evidence=IEA

GO:0006479 "protein methylation" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=RCA

TIGR_CMR|CPS_0540 CPS_0540 "ribosomal protein L11 methyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 77/271 (28%), Positives = 131/271 (48%)

Query:    72 PYLLVRICCQKHALDMFSE-APLCFGASSTSVDEHDNDADEN--SDE-IY-----IDSIF 122
             P++ +R+   +   + +S+    C   + T +D  D    E    DE IY     +  +F
Sbjct:     2 PWIQLRLSANEDNAEKYSDWLSACGSQAVTFIDAKDTPIYEPLPGDEVIYWSNTVVMGLF 61

Query:   123 PECKDVDECILNTANSIGL-KEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW- 180
                 D+D+ +++   SI   KE  RY+++  E  +W ++  ++FHP++  + LW+ P W 
Sbjct:    62 EASHDMDK-VISYLQSIHPDKEQMRYKLEQLEDKDWEREWMDNFHPMKFGERLWVCPSWR 120

Query:   181 ---NVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTVDIDPQVIKSAH 237
                + +A N++L+PGLAFGTG H TT          + G +L  D   VD       S  
Sbjct:   121 DVPDPEAVNVMLDPGLAFGTGTHPTT----ALCLTWLDGLDL-QDKTVVDFG---CGSGI 172

Query:   238 QNAALNNIGPKKM-KLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANI 296
              + A   +G KK+  + + P     S  N   + + + L  +  +   E +  DVV+ANI
Sbjct:   173 LSLAALKLGAKKVIGIDIDPQALQASLANAERNNVSDRLELYLPKDQPEFKA-DVVVANI 231

Query:   297 LLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
             L  PL +LA  I+ Y     ++ +SG+L EQ
Sbjct:   232 LAGPLRELAPVIIEYVGDKGLLALSGVLEEQ 262

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TIGR_CMR|VC_0293 VC_0293 "ribosomal protein L11 methyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 56/185 (30%), Positives = 91/185 (49%)

Query:   147 YEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILNPGLAFGTGEHAT 202
             ++V+  E  +W ++  ++FHP++  + LWI P W    + QA N++L+PGLAFGTG H T
Sbjct:    86 HKVEQVEDKDWEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPT 145

Query:   203 TKXXXXXXXXXIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPS 262
             T             G+  +D+G       ++  A    A+     K + + + P     S
Sbjct:   146 TALCLEWLDNLDLSGKTVIDFGC---GSGILAIA----AIKLGAAKVIGIDIDPQALLAS 198

Query:   263 SMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 322
               N   +G+ + +  +  +   E    DVV+ANIL  PL +L+  I    KPG  + +SG
Sbjct:   199 KDNAARNGVEDQIEVYLPKDQPEGLVADVVVANILAGPLRELSPIIKGLLKPGGQLAMSG 258

Query:   323 ILSEQ 327
             IL  Q
Sbjct:   259 ILDTQ 263

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|P0A8T1 prmA "methyltransferase for 50S ribosomal subunit protein L11" [Escherichia coli K-12 (taxid:83333)]

 Score = 210 (79.0 bits), Expect = 7.9e-17, P = 7.9e-17
 Identities = 73/257 (28%), Positives = 120/257 (46%)

Query:    83 HALDMFSEAPLCFGASS-TSVDEHDNDADE---NSDEIYIDS----IFPECKDVDECILN 134
             +A D+ S+A +  GA S T  D HD    E       ++ D+    +F    D+++ +  
Sbjct:    14 NAEDL-SDALMEAGAVSITFQDTHDTPVFEPLPGETRLWGDTDVIGLFDAETDMNDVVAI 72

Query:   135 TANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW----NVQATNIILN 190
               N   L     ++++  E  +W ++  ++FHP+   + LWI P W    +  A N++L+
Sbjct:    73 LENHPLLGAGFAHKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLD 132

Query:   191 PGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKM 250
             PGLAFGTG H TT             G+  +D+G       ++  A    AL     K +
Sbjct:   133 PGLAFGTGTHPTTSLCLQWLDSLDLTGKTVIDFGC---GSGILAIA----ALKLGAAKAI 185

Query:   251 KLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVS 310
              + + P     S  N   +G+ + L  +  +   E  + DVV+ANIL  PL +LA  I  
Sbjct:   186 GIDIDPQAIQASRDNAERNGVSDRLELYLPKDQPEEMKADVVVANILAGPLRELAPLISV 245

Query:   311 YAKPGAVVGISGILSEQ 327
                 G ++G+SGIL+ Q
Sbjct:   246 LPVSGGLLGLSGILASQ 262

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0018023 "peptidyl-lysine trimethylation" evidence=IDA;IMP

GO:0018012 "N-terminal peptidyl-alanine trimethylation" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|SO_0395 SO_0395 "ribosomal protein L11 methyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 204 (76.9 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 73/271 (26%), Positives = 120/271 (44%)

Query:    72 PYLLVRICCQKHALDMFSEAPLCFGASS-TSVDEHDNDADE---NSDEIYIDSIFPECKD 127
             P++ +RI       +  S+  +  GA S T  D  D    E       ++ D++     +
Sbjct:     2 PWIQLRINTNSDDAETISDLLMEEGAVSITFEDGKDTPIFEPKLGETPLWRDTVVVALFE 61

Query:   128 VDECILNTANSIGLKEIP------RYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW- 180
              D  +  T     LK +P       ++++  E  +W+++  +++HP++  K LWI P W 
Sbjct:    62 ADTDLTPTIEM--LKTLPFLGEHFSHKIEQIEDKDWVREWMDNYHPIQFGKRLWICPSWR 119

Query:   181 ---NVQATNIILNPGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTVDIDPQVIKSAH 237
                +  A N+IL+PGLAFGTG H TT              E  +D+G        I +  
Sbjct:   120 EVPDPTAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNEEVIDFGC----GSGILAV- 174

Query:   238 QNAALNNIGPKKMK-LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANI 296
               AAL  +G KK+  + +       S  N   + + + L  +         + DV++ANI
Sbjct:   175 --AALK-LGAKKVTGIDIDYQAIDASKANAERNDVADQLELYLPEDQPADLKADVLVANI 231

Query:   297 LLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
             L  PL +LA  I    K G  + +SG+L EQ
Sbjct:   232 LAGPLRELAPLIAERVKTGGKLALSGLLKEQ 262

GO:0006412 "translation" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

TIGR_CMR|BA_4537 BA_4537 "ribosomal protein L11 methyltransferase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 169 (64.5 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 61/236 (25%), Positives = 105/236 (44%)

Query:   110 DENSDE-IYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMG------EQCN---WIK 159
             DE   E + I + FP+   + E I    +SI +  +P Y++++G       + N   W  
Sbjct:    55 DEYPAEGVLIKAYFPQTDSLHETIAGVKSSIDV--LPSYDIEIGTGNITVNEVNEEDWAT 112

Query:   160 KAQESFHPVEVTKGLWIVPEWNVQATN-----II-LNPGLAFGTGEHATTKXXXXXXXXX 213
               ++ +HPV+++    IVP W     +     II L+PG+AFGTG H TT          
Sbjct:   113 AWKKYYHPVQISDTFTIVPTWEEYTPSSPEEKIIELDPGMAFGTGTHPTTTMCIRALEKT 172

Query:   214 IKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLH-LVPDRTFPSSMNERV---D 269
             ++ G+  +D GT         S   + A   +G   ++ + L P     + MN R+   D
Sbjct:   173 VQPGDTIIDVGT--------GSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLNKTD 224

Query:   270 GIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS 325
              +V    +  + GI      D+++AN+L   +L   +      K G +   SGI++
Sbjct:   225 DVVSVGQNSLLEGIEGP--VDLIVANLLAEIILLFPEDAARVVKSGGLFITSGIIA 278

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

TIGR_CMR|GSU_0447 GSU_0447 "ribosomal protein L11 methyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 145 (56.1 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 66/270 (24%), Positives = 114/270 (42%)

Query:    78 ICCQKHA--LDMFSEAPLCFGASSTSVDEH--DN---DADENSDEIYIDSIFPECKD--- 127
             +CCQ  A  +D+ ++  +    +  S+D    D    D  E  D   + + F    D   
Sbjct:     8 VCCQVPAGLVDLLADFLVELSGNGVSIDNRALDTFTLDGIEELDTATVRAYFDPATDMAG 67

Query:   128 ----VDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNVQ 183
                 ++  + + A + G   IP   V +    +W    ++ F P  + + L I P W   
Sbjct:    68 QIAQIERFLGDNAAAFGGAPIPAPTVTLIRDEDWATGWRQHFVPTRIGRHLVIKPTWEPF 127

Query:   184 ATN-----IILNPGLAFGTGEHATTKXXXXXXXXXIKGGELFLDYGTVDIDPQVIKSAHQ 238
             A       I L+PG+AFGTG H TT+          +   + LD GT         S   
Sbjct:   128 APEPGDQVIELDPGMAFGTGTHPTTRLCLEALETLGRPDRV-LDVGT--------GSGIL 178

Query:   239 NAALNNIGPKKM-KLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL 297
               A   +G +++    + PD    +  N  ++G+   L +  +  I     +DVV+ANIL
Sbjct:   179 AIAAVRLGARQVIGTDIDPDAVIVAGENCALNGVEVELVTTPLALIPG--RFDVVLANIL 236

Query:   298 LNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
                L+++A  + +    G  + +SGIL+E+
Sbjct:   237 AEDLVRMAGDLAAKVAAGGHLILSGILTER 266

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|CHY_0417 CHY_0417 "ribosomal protein L11 methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 139 (54.0 bits), Expect = 5.0e-07, P = 5.0e-07
 Identities = 61/232 (26%), Positives = 108/232 (46%)

Query:   108 DADENSDEIYIDSIFPECKDVDECILNTANSIGLKEIP--RYEVKMGEQCNWIKKAQESF 165
             D+   ++   + + FP  ++++  +      +    IP   Y  ++ E+ +W    ++ F
Sbjct:    54 DSVLKAERATVRAYFPLTENINTLLSQINERLKSLGIPFNLYFQEVDEE-SWANSWKKYF 112

Query:   166 HPVEVTKGLWIVPEWNV-----QATNII-LNPGLAFGTGEHATTKXXXXXXXXXIKGGEL 219
              PVEV + L I P W       +   II ++PG+AFGTG H TT          +  G++
Sbjct:   113 KPVEVGEFL-IKPTWEKLPSGKEDKKIIEIDPGMAFGTGTHVTTALVLEALPKYVSPGKV 171

Query:   220 FLDYGT---VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
              +D GT   +      +  A +  AL+ I P  +K   V       S+N R++  +  + 
Sbjct:   172 VVDVGTGSGILAIASALLGAEKIYALD-IDPVAVK---VARENI--SIN-RLEDKITVIE 224

Query:   277 SHKIRGISETEEYDVVIANILLNPLLQLA-DHIVSYAKPGAVVGISGILSEQ 327
             +  + G ++T   DV+IANI+   + +LA D     A  G  +G SGI+ E+
Sbjct:   225 NDLLHGFNQT--VDVIIANIIAAVIKELALDAYEKLATGGIFIG-SGIIVER 273

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TIGR_CMR|CJE_1260 CJE_1260 "ribosomal protein L11 methyltransferase, putative" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 91 (37.1 bits), Expect = 0.00012, Sum P(3) = 0.00012
 Identities = 29/112 (25%), Positives = 50/112 (44%)

Query:    95 FGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQ 154
             F     +++E DN     S E   +  F    ++    L T  ++  K I    +   E 
Sbjct:    25 FDLGIEAIEEKDNGVYIRSHESLEE--FSWALEIFAQKLTTTFNLNHKIISNLSLVEKEN 82

Query:   155 CNWIKKAQESFHPVEVTKGLWIVPEWNVQATNII---LNPGLAFGTGEHATT 203
              +WI++ ++   P+ V   ++I   W  +  N I   +NP LAFG+G H +T
Sbjct:    83 KDWIQEYKKGIKPILVDN-VYIHTTWQEEKKNCINIKINPALAFGSGHHEST 133

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TIGR_CMR|SPO_3120 SPO_3120 "ribosomal protein L11 methyltransferase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 99 (39.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query:   289 YDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
             YD++ ANIL  PL+ LA  + S+ +PG    +SGIL+EQ
Sbjct:   219 YDLIFANILKGPLVALAPDVASHLRPGGYAILSGILNEQ 257

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	327
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	7e-60
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	2e-47
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	3e-40
TIGR00406	288	TIGR00406, prmA, ribosomal protein L11 methyltrans	1e-31

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score =  193 bits (492), Expect = 7e-60
 Identities = 90/290 (31%), Positives = 131/290 (45%), Gaps = 61/290 (21%)

Query: 72  PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADEN-----------SDEIYIDS 120
            +L + I   + A +  S A   FGA   ++++ D   D              D++ + +
Sbjct: 1   TWLELTIHTTREAAERVSNALEEFGALGVAIEDADTLNDRPIGEPGPGETRLWDDVRVKA 60

Query: 121 IFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW 180
           +F    D  E I   A  I   + P+  V+  E+ +W +  ++ FHPV + + L IVP W
Sbjct: 61  LFDVETDALELIAQLAELIPGLDSPKVTVEEVEEEDWARAWKKYFHPVRIGERLTIVPSW 120

Query: 181 N----VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT----------- 225
                  A NI L+PG+AFGTG H TT LCL  L SL+K GE  LD G            
Sbjct: 121 EDYPEPDAVNIELDPGMAFGTGTHPTTALCLEALESLVKPGETVLDVGCGSGILAIAALK 180

Query: 226 --------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSS 277
                   VDIDP  +++A +NA LN +                         +  YL  
Sbjct: 181 LGAKKVVGVDIDPVAVRAAKENAELNGVE----------------------AQLEVYLP- 217

Query: 278 HKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
                + E  + DVV+ANIL +PL++LA  I +  KPG  + +SGIL EQ
Sbjct: 218 ---GDLPE-GKADVVVANILADPLIELAPDIYALVKPGGYLILSGILEEQ 263

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score =  159 bits (406), Expect = 2e-47
 Identities = 68/206 (33%), Positives = 98/206 (47%), Gaps = 54/206 (26%)

Query: 145 PRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNV----QATNIILNPGLAFGTGEH 200
           P Y ++  E  +W ++ ++ FHP+ +   LWIVP W         NI L+PG+AFGTG H
Sbjct: 44  PTYTIEEVEDEDWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTH 103

Query: 201 ATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAA 241
            TT+LCL  L  L+  G+  LD G                    VDIDPQ +++A +NA 
Sbjct: 104 PTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAE 163

Query: 242 LNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL 301
           LN +   ++ ++L                                 + DV++ANIL NPL
Sbjct: 164 LNGV---ELNVYLPQG----------------------------DLKADVIVANILANPL 192

Query: 302 LQLADHIVSYAKPGAVVGISGILSEQ 327
           L+LA  +    KPG  + +SGIL EQ
Sbjct: 193 LELAPDLARLLKPGGRLILSGILEEQ 218

Length = 250

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score =  142 bits (360), Expect = 3e-40
 Identities = 80/291 (27%), Positives = 126/291 (43%), Gaps = 60/291 (20%)

Query: 72  PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDAD---------ENSDEIYIDSIF 122
           P++ + +     A +  S+A    GA   ++++   D              D + + ++F
Sbjct: 3   PWIELSLITTGEAAERVSDALEEAGAVGVAIEDAKLDTPSFEPVFGEPRLWDGVKVKALF 62

Query: 123 PECKDVDECILNTANSIGLKEIPRY--EVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW 180
           P   D+   +      + L E+  +  E +  E+ +W ++ ++ FHPV + +   IVP W
Sbjct: 63  PADTDLALLLAELEALLALLELFAHVIEQEEDEE-DWEREWKKYFHPVRIGERFVIVPSW 121

Query: 181 -----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT---------- 225
                     NI L+PGLAFGTG H TT LCL  L  L+K G+  LD G           
Sbjct: 122 REYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAA 181

Query: 226 ---------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS 276
                    VDIDPQ +++A +NA LN +                    E +     +L 
Sbjct: 182 KLGAKKVVGVDIDPQAVEAARENARLNGV--------------------ELLVQAKGFLL 221

Query: 277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
                   E   +DV++ANIL   L++LA  I    KPG  + +SGIL +Q
Sbjct: 222 LEVP----ENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQ 268

Length = 300

>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase

 Score =  119 bits (300), Expect = 1e-31
 Identities = 77/293 (26%), Positives = 119/293 (40%), Gaps = 67/293 (22%)

Query: 73  YLLVRICCQKHALDMFSEAPLCFGASSTSV-DEHD------NDADE-----NSDEIYIDS 120
           ++ +RI   K   +  S+A    GA   +  D+ D      +   E     N D I   +
Sbjct: 1   WIEIRINTTKELAEATSDALEEAGAVGVTFEDDKDTIYFEPHLPGEKRLWGNLDVI---A 57

Query: 121 IFPECKDVDECILN--TANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVP 178
           +F    D++  ++    A  + L    + E     + +W +  +++FHPV+  K  WI P
Sbjct: 58  LFDAETDMNNSVIPLLEAFCLDLGRNHKIEFDEFSK-DWERAWKDNFHPVQFGKRFWICP 116

Query: 179 EW-----NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------- 225
            W     +  A  I+L+PGLAFGTG H TT LCL  L  L    +  +D G         
Sbjct: 117 SWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIA 176

Query: 226 -----------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY 274
                      +DIDP  ++SA +NA LN +                     R+   + Y
Sbjct: 177 ALKLGAAKVVGIDIDPLAVESARKNAELNQVSD-------------------RLQVKLIY 217

Query: 275 LSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
           L            + DV++ANIL   + +L        KPG  + +SGIL  Q
Sbjct: 218 LEQ------PIEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGILETQ 264

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	100.0
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	100.0
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	100.0
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	100.0
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.43
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.25
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.13
PRK12335	287	tellurite resistance protein TehB; Provisional	99.13
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.11
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.06
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.05
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.03
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.0
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.97
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.95
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.92
COG2890	280	HemK Methylase of polypeptide chain release factor	98.92
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.88
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.86
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.86
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.85
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.85
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.83
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.81
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.8
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.8
PRK14967	223	putative methyltransferase; Provisional	98.79
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.76
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.75
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.75
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.73
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.73
COG4123	248	Predicted O-methyltransferase [General function pr	98.72
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.71
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.7
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.68
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.67
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.67
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.67
PLN02244	340	tocopherol O-methyltransferase	98.64
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.63
PRK14968	188	putative methyltransferase; Provisional	98.62
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.61
PRK11207	197	tellurite resistance protein TehB; Provisional	98.59
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.59
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.57
PLN02672	1082	methionine S-methyltransferase	98.57
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.57
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.57
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.53
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.52
PLN02336	475	phosphoethanolamine N-methyltransferase	98.5
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.49
KOG2904	328	consensus Predicted methyltransferase [General fun	98.49
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.48
PLN03075	296	nicotianamine synthase; Provisional	98.48
PLN02476	278	O-methyltransferase	98.47
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.46
COG4122	219	Predicted O-methyltransferase [General function pr	98.45
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.43
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.42
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.4
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.4
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.4
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.37
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.36
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.35
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.34
PRK07402	196	precorrin-6B methylase; Provisional	98.33
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.31
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.31
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.31
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.29
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.27
PRK04457	262	spermidine synthase; Provisional	98.27
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.27
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.26
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.25
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.24
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.22
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.22
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.22
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.21
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.21
PRK06922	677	hypothetical protein; Provisional	98.2
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.19
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.18
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.18
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.15
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.15
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.15
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.14
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.13
PLN02490	340	MPBQ/MSBQ methyltransferase	98.12
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.09
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.09
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.07
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.06
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.05
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.05
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.02
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.02
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.01
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.0
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.0
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.0
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.99
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.98
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.98
TIGR00452	314	methyltransferase, putative. Known examples to dat	97.96
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	97.95
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.91
PRK08317	241	hypothetical protein; Provisional	97.9
PRK00811	283	spermidine synthase; Provisional	97.9
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.9
KOG2899	288	consensus Predicted methyltransferase [General fun	97.9
PHA03412	241	putative methyltransferase; Provisional	97.88
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.86
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.83
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.82
PRK04266	226	fibrillarin; Provisional	97.8
PRK01581	374	speE spermidine synthase; Validated	97.79
PLN02366	308	spermidine synthase	97.79
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.78
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.78
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.78
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.77
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	97.76
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.75
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.73
PHA03411	279	putative methyltransferase; Provisional	97.73
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	97.69
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.69
PRK06202	232	hypothetical protein; Provisional	97.67
PRK03612	521	spermidine synthase; Provisional	97.67
PLN02336	475	phosphoethanolamine N-methyltransferase	97.66
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.61
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.58
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.57
KOG1271	227	consensus Methyltransferases [General function pre	97.57
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.54
COG2520	341	Predicted methyltransferase [General function pred	97.53
PRK05785	226	hypothetical protein; Provisional	97.5
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.48
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.45
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.44
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.44
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.43
TIGR03438	301	probable methyltransferase. This model represents	97.43
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.37
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.32
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.31
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.28
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.21
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.17
PLN02823	336	spermine synthase	97.11
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.11
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.09
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.07
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.06
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.04
PTZ00146	293	fibrillarin; Provisional	97.02
COG3897	218	Predicted methyltransferase [General function pred	97.0
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.98
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	96.97
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	96.97
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.95
TIGR00438	188	rrmJ cell division protein FtsJ.	96.91
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	96.88
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.88
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.87
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	96.87
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	96.85
KOG4300	252	consensus Predicted methyltransferase [General fun	96.78
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.77
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	96.74
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	96.68
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.62
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.58
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	96.57
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	96.52
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	96.52
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.49
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	96.43
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.42
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.42
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.31
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.21
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.14
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	96.12
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.1
COG1041	347	Predicted DNA modification methylase [DNA replicat	96.06
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	96.05
PRK00536	262	speE spermidine synthase; Provisional	95.99
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	95.93
KOG2361	264	consensus Predicted methyltransferase [General fun	95.81
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.76
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	95.59
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	95.54
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	95.48
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	94.9
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	94.82
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	94.48
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	94.36
COG2521	287	Predicted archaeal methyltransferase [General func	94.33
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	94.27
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	94.25
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	94.22
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	93.78
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	93.71
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	93.66
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	93.61
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	93.08
COG4262	508	Predicted spermidine synthase with an N-terminal m	91.9
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	91.71
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	91.58
COG4076	252	Predicted RNA methylase [General function predicti	91.15
KOG2912	419	consensus Predicted DNA methylase [Function unknow	90.84
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	90.62
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	90.58
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	90.47
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	90.29
PRK04148	134	hypothetical protein; Provisional	89.87
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	89.69
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	89.33
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	89.31
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	89.09
KOG3010	261	consensus Methyltransferase [General function pred	88.3
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	88.29
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	87.84
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	87.59
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	86.65
KOG2671	421	consensus Putative RNA methylase [Replication, rec	86.13
KOG2730	263	consensus Methylase [General function prediction o	84.76
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	84.52
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	84.0
KOG2940	325	consensus Predicted methyltransferase [General fun	83.94
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	83.85
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	82.63
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	82.07
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	81.68
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	80.13

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-59  Score=446.49  Aligned_cols=234  Identities=32%  Similarity=0.511  Sum_probs=197.1

Q ss_pred             CCCcEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCC--CC-------CCCCCCcEEEEEEcCCCCCHHHHHHhhhhhcC
Q 041970           70 ESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHD--ND-------ADENSDEIYIDSIFPECKDVDECILNTANSIG  140 (327)
Q Consensus        70 ~m~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~--~~-------~~~~~~~~~v~ayfp~~~~~~~~l~~~~~~~~  140 (327)
                      +|+|+|++|.|+++++|.++++|.+.|+.||.++|..  .+       ....|+.+.+.+||+.+.+.+..++.+.+.+.
T Consensus         1 ~m~w~el~i~~~~~~aE~~~~~l~e~G~~~v~~eD~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   80 (300)
T COG2264           1 MMPWIELSLITTGEAAERVSDALEEAGAVGVAIEDAKLDTPSFEPVFGEPRLWDGVKVKALFPADTDLALLLAELEALLA   80 (300)
T ss_pred             CCceEEEEEEeCHHHHHHHHHHHHhcCcceeeeecccccCcccccccCCCcccccceeEeeecccchHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999883  11       11236788999999999988888887766543


Q ss_pred             C-CCCCcceeeeccchhhHHHHhhcCceEEEcCcEEEEcCCC----C-CceeEEEccCcccCCCchhhHHHHHHHHHhhh
Q 041970          141 L-KEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN----V-QATNIILNPGLAFGTGEHATTKLCLLLLRSLI  214 (327)
Q Consensus       141 l-~~~~~~~~~~~ee~DW~~~Wk~~f~P~~vg~~l~I~P~W~----~-~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~  214 (327)
                      . ...-.+.....+|+||.++||+||+|+++|++|+|+|+|.    + ++++|+||||||||||+||||+|||++|++++
T Consensus        81 ~~~~~~~~~~~~~~e~DW~~~wk~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~  160 (300)
T COG2264          81 LLELFAHVIEQEEDEEDWEREWKKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLL  160 (300)
T ss_pred             ccccccceeEeecChHHHHHHHHhcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhh
Confidence            2 2111234455668899999999999999999999999998    2 36789999999999999999999999999999


Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      ++|++|||+||                   +||||.||++|++|+++|++.. .+.+.  ..+.         .      
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~-~~~~~--~~~~---------~------  222 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL-LVQAK--GFLL---------L------  222 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch-hhhcc--cccc---------h------
Confidence            99999999999                   9999999999999999999973 22221  1111         0      


Q ss_pred             ccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeeccCCC
Q 041970          276 SSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ  327 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~~Q  327 (327)
                            .....++||+|||||+|+++..|+|++.+++||||++|+||||.+|
T Consensus       223 ------~~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q  268 (300)
T COG2264         223 ------EVPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQ  268 (300)
T ss_pred             ------hhcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhH
Confidence                  1112469999999999999999999999999999999999999886

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=100.00  E-value=3.8e-60  Score=452.42  Aligned_cols=229  Identities=34%  Similarity=0.582  Sum_probs=128.9

Q ss_pred             CcEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCC---C-CC-------CCCCCcEEEEEEcCCCCCHHHHHHhhhhhcC
Q 041970           72 PYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHD---N-DA-------DENSDEIYIDSIFPECKDVDECILNTANSIG  140 (327)
Q Consensus        72 ~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~---~-~~-------~~~~~~~~v~ayfp~~~~~~~~l~~~~~~~~  140 (327)
                      +|+||+|.|+++++|+++++|.++|+.||.++|..   . +.       ...++.+.|++||+.+.+.++.++.+++...
T Consensus         1 ~W~ei~i~~~~e~~e~vs~~L~~~G~~gv~~ed~~~~~~~~~~e~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~l~~~~~   80 (295)
T PF06325_consen    1 KWLEISITTPSEAEEAVSDILMELGANGVEIEDPDLLDEEPIFEPDPDEEPLWDEVRVKAYFPEDEDIEELLAALRELLE   80 (295)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccccccccccccccccchHhhcCCCEEEEEeccccccCcccccCCCCcccccCceEEEEeCCCcChHHHHHHHHHHhh
Confidence            59999999999999999999999999999998876   1 00       0114567899999998888877777665432


Q ss_pred             CCCCCcceeeeccchhhHHHHhhcCceEEEcCcEEEEcCCC-----CCceeEEEccCcccCCCchhhHHHHHHHHHhhhc
Q 041970          141 LKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN-----VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIK  215 (327)
Q Consensus       141 l~~~~~~~~~~~ee~DW~~~Wk~~f~P~~vg~~l~I~P~W~-----~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~  215 (327)
                      ......+.++..+++||+++||+||+|++||++|+|+|+|+     ++.++|+||||||||||+||||+|||++|+++.+
T Consensus        81 ~~~~~~~~~~~~~~~dW~~~Wk~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~  160 (295)
T PF06325_consen   81 NLGEIEIEIEEIEEEDWEEAWKKYFKPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVK  160 (295)
T ss_dssp             -------EEEE--HHCHHHHHHHH---EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSS
T ss_pred             ccCCCceEEEEeccccchHHHHhcCccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhcc
Confidence            11123567788899999999999999999999999999998     2457899999999999999999999999999999


Q ss_pred             CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      +|++|||+||                   +||||.||+.|++|+++||+. +++.+.. ..+                  
T Consensus       161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-~~~~v~~-~~~------------------  220 (295)
T PF06325_consen  161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-DRIEVSL-SED------------------  220 (295)
T ss_dssp             TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-TCEEESC-TSC------------------
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-eeEEEEE-ecc------------------
Confidence            9999999999                   999999999999999999998 4776521 111                  


Q ss_pred             cccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeeccCCC
Q 041970          277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ  327 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~~Q  327 (327)
                            . ..++||+|+|||++++|..|+|++.++|+|||+||+|||+.+|
T Consensus       221 ------~-~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~  264 (295)
T PF06325_consen  221 ------L-VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQ  264 (295)
T ss_dssp             ------T-CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGG
T ss_pred             ------c-ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHH
Confidence                  1 1479999999999999999999999999999999999999876

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=100.00  E-value=8.5e-46  Score=351.93  Aligned_cols=230  Identities=29%  Similarity=0.401  Sum_probs=181.6

Q ss_pred             cEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCCCC----CCCCCCcEEEEEEcCCCCCHHHH--HH---hhhhhcCCCC
Q 041970           73 YLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDND----ADENSDEIYIDSIFPECKDVDEC--IL---NTANSIGLKE  143 (327)
Q Consensus        73 w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~----~~~~~~~~~v~ayfp~~~~~~~~--l~---~~~~~~~l~~  143 (327)
                      |+||+|.|+++++|+++++|.++|+.||+++|....    .+.+.+...+++|++.+...++.  +.   ...+.+++..
T Consensus         1 w~~~~~~~~~~~~e~~~~~l~~~g~~gv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (288)
T TIGR00406         1 WIEIRINTTKELAEATSDALEEAGAVGVTFEDDKDTIYFEPHLPGEKRLWGNLDVIALFDAETDMNNSVIPLLEAFCLDL   80 (288)
T ss_pred             CEEEEEEeCHHHHHHHHHHHHhcCCCEEEEEcCCCCceecCCCCCCccEEEEEEeeccCcccchHHHHHHHHHHhcccCC
Confidence            999999999999999999999999999999986421    11222456788888755432211  11   1111222211


Q ss_pred             CC-cceeeeccchhhHHHHhhcCceEEEcCcEEEEcCCCC-----CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCC
Q 041970          144 IP-RYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEWNV-----QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGG  217 (327)
Q Consensus       144 ~~-~~~~~~~ee~DW~~~Wk~~f~P~~vg~~l~I~P~W~~-----~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g  217 (327)
                      .. .......+++||+++||+||+|+++|++|+|+|+|+.     +...|.||||||||||+||||++|+++|+++.++|
T Consensus        81 ~~~~~~~~~~~~~dW~~~w~~~~~p~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g  160 (288)
T TIGR00406        81 GRNHKIEFDEFSKDWERAWKDNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKD  160 (288)
T ss_pred             CcceeEEeecchhhHHHHHHHhCCCEEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCC
Confidence            11 1223334468999999999999999999999999972     35789999999999999999999999999999999


Q ss_pred             Ceeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccc
Q 041970          218 ELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSH  278 (327)
Q Consensus       218 ~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~  278 (327)
                      ++|||+||                   +|+|+.|++.|++|++.|++. +++.+..  ++..                  
T Consensus       161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~-~~~~~~~--~~~~------------------  219 (288)
T TIGR00406       161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS-DRLQVKL--IYLE------------------  219 (288)
T ss_pred             CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-cceEEEe--cccc------------------
Confidence            99999999                   999999999999999999987 4555432  2210                  


Q ss_pred             cccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeeccCCC
Q 041970          279 KIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ  327 (327)
Q Consensus       279 ~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~~Q  327 (327)
                         .. ..++||+|+||++++.+..+++.+.+.|||||++++|||+.+|
T Consensus       220 ---~~-~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~~~~  264 (288)
T TIGR00406       220 ---QP-IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGILETQ  264 (288)
T ss_pred             ---cc-cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcHhH
Confidence               01 1468999999999999999999999999999999999998764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=100.00  E-value=6.4e-41  Score=312.02  Aligned_cols=194  Identities=39%  Similarity=0.683  Sum_probs=165.2

Q ss_pred             CCcEEEEEEeCCchHHHHHHHHHhcCCceEEEEcCCCCCCCCCCcEEEEEEcCCCCCHHHHHHhhhhhcCCC-CCCccee
Q 041970           71 SPYLLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDECILNTANSIGLK-EIPRYEV  149 (327)
Q Consensus        71 m~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~~~~~~~~~~v~ayfp~~~~~~~~l~~~~~~~~l~-~~~~~~~  149 (327)
                      |+|+|++|.|+++++|++++.|.++|+.                               +.++.+.+ ++.. ....+.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~-------------------------------~~~~~~~~-~~~~~~~~~~~~   48 (250)
T PRK00517          1 MKWIELTLNTTPEAAEALSDILMELGAL-------------------------------AALANLAG-LGLDLGEPTYTI   48 (250)
T ss_pred             CceEEEEEEeChhhHHHHHHHHHHcChH-------------------------------HHHHHhhh-cCCCCCCCceEE
Confidence            7899999999999999999999999874                               22322221 1111 1235677


Q ss_pred             eeccchhhHHHHhhcCceEEEcCcEEEEcCCC----CCceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee
Q 041970          150 KMGEQCNWIKKAQESFHPVEVTKGLWIVPEWN----VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT  225 (327)
Q Consensus       150 ~~~ee~DW~~~Wk~~f~P~~vg~~l~I~P~W~----~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc  225 (327)
                      +..+++||+++||++|+|+++|++++|+|+|+    ++...|.||||||||||+||||++|+++|+++..++++|||+||
T Consensus        49 ~~~~~~dw~~~w~~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGc  128 (250)
T PRK00517         49 EEVEDEDWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGC  128 (250)
T ss_pred             EEcCchhHHHHHHHHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCC
Confidence            88889999999999999999999999999998    24577999999999999999999999999999889999999999


Q ss_pred             -------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCC
Q 041970          226 -------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISET  286 (327)
Q Consensus       226 -------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~  286 (327)
                                         +|+||.+++.|++|++.|++. +++.+.  .                            .+
T Consensus       129 GsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-~~~~~~--~----------------------------~~  177 (250)
T PRK00517        129 GSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE-LNVYLP--Q----------------------------GD  177 (250)
T ss_pred             cHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEc--c----------------------------CC
Confidence                               999999999999999999985 344431  0                            02


Q ss_pred             CCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeeccCCC
Q 041970          287 EEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ  327 (327)
Q Consensus       287 ~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~~Q  327 (327)
                      .+||+|+||+.++++..+++.+.++|||||++++|||+.++
T Consensus       178 ~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~  218 (250)
T PRK00517        178 LKADVIVANILANPLLELAPDLARLLKPGGRLILSGILEEQ  218 (250)
T ss_pred             CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHhh
Confidence            37999999999999999999999999999999999998653

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.43  E-value=1.7e-12  Score=114.40  Aligned_cols=110  Identities=25%  Similarity=0.411  Sum_probs=87.7

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcC
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNN  244 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNg  244 (327)
                      +.+...||+.=..+..+.|++.++.+...  ++++|||+||                    +|+++.|++.|++|++.|+
T Consensus         2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~   79 (170)
T PF05175_consen    2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG   79 (170)
T ss_dssp             EEEEEETTSTTTTSHHHHHHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCeeCCCCCCHHHHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC
Confidence            45788999954466789999999999987  6789999999                    9999999999999999999


Q ss_pred             CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--------HHHHHHHHHHhhccCCCc
Q 041970          245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------NPLLQLADHIVSYAKPGA  316 (327)
Q Consensus       245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------~vL~~L~p~i~~~LkpGG  316 (327)
                      ++ + +++.  ..|.+        +            .+ ..++||+|++|++.        ..+.+++....++|+|||
T Consensus        80 ~~-~-v~~~--~~d~~--------~------------~~-~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G  134 (170)
T PF05175_consen   80 LE-N-VEVV--QSDLF--------E------------AL-PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGG  134 (170)
T ss_dssp             CT-T-EEEE--ESSTT--------T------------TC-CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEE
T ss_pred             cc-c-cccc--ccccc--------c------------cc-cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCC
Confidence            97 3 6664  45553        0            12 25789999999864        367889999999999999


Q ss_pred             EEEEe
Q 041970          317 VVGIS  321 (327)
Q Consensus       317 ~LIlS  321 (327)
                      .|++-
T Consensus       135 ~l~lv  139 (170)
T PF05175_consen  135 RLFLV  139 (170)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99764

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.25  E-value=5e-11  Score=116.69  Aligned_cols=110  Identities=20%  Similarity=0.283  Sum_probs=88.8

Q ss_pred             ceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc
Q 041970          184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      ...+...||+.+.++.++.|+++++.|...  ...+|||+||                    +|+++.|++.|++|++.|
T Consensus       166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n  243 (342)
T PRK09489        166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN  243 (342)
T ss_pred             CEEEEeCCCCCCCCCCCHHHHHHHHhcccc--CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            457889999999999999999999998754  2348999999                    999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--------HHHHHHHHHHhhccCCC
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------NPLLQLADHIVSYAKPG  315 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------~vL~~L~p~i~~~LkpG  315 (327)
                      ++..   ++.  .+|..                    ...  .++||+|++|+..        .....++..+.++||||
T Consensus       244 ~l~~---~~~--~~D~~--------------------~~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkpg  296 (342)
T PRK09489        244 GLEG---EVF--ASNVF--------------------SDI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSG  296 (342)
T ss_pred             CCCC---EEE--Ecccc--------------------ccc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcC
Confidence            9862   332  34432                    011  4689999999864        34678899999999999


Q ss_pred             cEEEEee
Q 041970          316 AVVGISG  322 (327)
Q Consensus       316 G~LIlSG  322 (327)
                      |.|++.+
T Consensus       297 G~L~iVa  303 (342)
T PRK09489        297 GELRIVA  303 (342)
T ss_pred             CEEEEEE
Confidence            9998754

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.13  E-value=4.8e-10  Score=111.20  Aligned_cols=114  Identities=18%  Similarity=0.185  Sum_probs=89.4

Q ss_pred             ceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc
Q 041970          184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      ...+.-.||+.=+.+...-|++.|+.|...  .+.+|||+||                    +|+++.|++.|++|++.|
T Consensus       198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~~--~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n  275 (378)
T PRK15001        198 DWTIHNHANVFSRTGLDIGARFFMQHLPEN--LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN  275 (378)
T ss_pred             eEEEEecCCccCCCCcChHHHHHHHhCCcc--cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            355777899988888899999999988643  2459999999                    999999999999999999


Q ss_pred             CCCC-CcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--------HHHHHHHHHHhhccCC
Q 041970          244 NIGP-KKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------NPLLQLADHIVSYAKP  314 (327)
Q Consensus       244 gv~~-~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------~vL~~L~p~i~~~Lkp  314 (327)
                      +.+. .++++.  .+|.+        .            .. ...+||+|++|+..        +...+++.++.++|+|
T Consensus       276 ~~~~~~~v~~~--~~D~l--------~------------~~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp  332 (378)
T PRK15001        276 MPEALDRCEFM--INNAL--------S------------GV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI  332 (378)
T ss_pred             CcccCceEEEE--Ecccc--------c------------cC-CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc
Confidence            8641 255654  34542        0            11 13579999999764        3456889999999999


Q ss_pred             CcEEEEee
Q 041970          315 GAVVGISG  322 (327)
Q Consensus       315 GG~LIlSG  322 (327)
                      ||.|++.+
T Consensus       333 GG~L~iV~  340 (378)
T PRK15001        333 NGELYIVA  340 (378)
T ss_pred             CCEEEEEE
Confidence            99999875

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.13  E-value=1.1e-10  Score=111.08  Aligned_cols=138  Identities=19%  Similarity=0.259  Sum_probs=102.5

Q ss_pred             chhhHHHHhhcCceEEEcCcEEEEcCCC-----CC----ceeEEEccCcccCCCc--hhhHHHHHHHHHhhhcCCCeeee
Q 041970          154 QCNWIKKAQESFHPVEVTKGLWIVPEWN-----VQ----ATNIILNPGLAFGTGE--HATTKLCLLLLRSLIKGGELFLD  222 (327)
Q Consensus       154 e~DW~~~Wk~~f~P~~vg~~l~I~P~W~-----~~----~~~I~idPG~AFGTG~--H~TT~lcLe~Le~~~~~g~~VLD  222 (327)
                      +++|...|++.|.|...+ +++.-+.|+     .+    .+.++.+|+..|+...  +++.+.++..+.. .+ +.+|||
T Consensus        50 de~g~~~~~~~l~~~~~~-~~i~p~~wh~v~~~s~d~~~~l~fy~~~~~~f~~~~~~~~~~~~~~~~~~~-~~-~~~vLD  126 (287)
T PRK12335         50 TEDGEELSEHIFDAENQP-PFIEPQAWHRIEAASDDLECQLSFYCKPEDYFHKKYNLTATHSEVLEAVQT-VK-PGKALD  126 (287)
T ss_pred             CCCCCeeeEEEEecCCCC-ceeCCcceEEEEEcCCCcEEEEEEEEcchhhHhhhhccccccHHHHHHhhc-cC-CCCEEE
Confidence            348999999999997654 354455887     12    2458899999998876  5778888877753 34 459999


Q ss_pred             eee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCC
Q 041970          223 YGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGIS  284 (327)
Q Consensus       223 vGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~  284 (327)
                      +||                  +|+++.|++.+++|++.+++.   +++.  ..|..         .          ..+ 
T Consensus       127 lGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~---v~~~--~~D~~---------~----------~~~-  181 (287)
T PRK12335        127 LGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLN---IRTG--LYDIN---------S----------ASI-  181 (287)
T ss_pred             eCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc---eEEE--Eechh---------c----------ccc-
Confidence            999                  999999999999999999873   4443  23321         0          011 


Q ss_pred             CCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEE
Q 041970          285 ETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       285 ~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                       .++||+|+++...     +-+..++..+.++|+|||++++
T Consensus       182 -~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        182 -QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             -cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence             5689999999643     3456788999999999999655

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=5.3e-10  Score=107.25  Aligned_cols=110  Identities=21%  Similarity=0.313  Sum_probs=86.5

Q ss_pred             ceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc
Q 041970          184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      +..+.=+|||.-..+-.--|++.|+-|....  +.+|||+||                    +|+|..||+.||+|++.|
T Consensus       128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~--~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N  205 (300)
T COG2813         128 ELTFKTLPGVFSRDKLDKGSRLLLETLPPDL--GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN  205 (300)
T ss_pred             ceEEEeCCCCCcCCCcChHHHHHHHhCCccC--CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc
Confidence            3557778999877778888999999988553  339999999                    999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--------HHHHHHHHHHhhccCCC
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------NPLLQLADHIVSYAKPG  315 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------~vL~~L~p~i~~~LkpG  315 (327)
                      +++. . .+.  .+|.+                    ..+  .++||+|++|++.        +.-.+|+....++|++|
T Consensus       206 ~~~~-~-~v~--~s~~~--------------------~~v--~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~g  259 (300)
T COG2813         206 GVEN-T-EVW--ASNLY--------------------EPV--EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPG  259 (300)
T ss_pred             CCCc-c-EEE--Eeccc--------------------ccc--cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccC
Confidence            9973 2 232  34542                    112  3499999999874        33458999999999999


Q ss_pred             cEEEEe
Q 041970          316 AVVGIS  321 (327)
Q Consensus       316 G~LIlS  321 (327)
                      |.|.+-
T Consensus       260 GeL~iV  265 (300)
T COG2813         260 GELWIV  265 (300)
T ss_pred             CEEEEE
Confidence            988764

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.06  E-value=8.4e-10  Score=88.85  Aligned_cols=82  Identities=28%  Similarity=0.446  Sum_probs=63.7

Q ss_pred             CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC-CCCCccccccchhhh
Q 041970          216 GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT-FPSSMNERVDGIVEY  274 (327)
Q Consensus       216 ~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~-~~~~~~g~~~~l~~~  274 (327)
                      ||.+|||+||                    +|++|.+++.|++|++.++.. +++++.  .+|. .              
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~--~~d~~~--------------   63 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS-DRITFV--QGDAEF--------------   63 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT-TTEEEE--ESCCHG--------------
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEE--ECcccc--------------
Confidence            5778999999                    999999999999999888876 678875  3443 1              


Q ss_pred             cccccccCCCCCCCeeEEEEcC-----Ch--HHHHHHHHHHhhccCCCcEEEEe
Q 041970          275 LSSHKIRGISETEEYDVVIANI-----LL--NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANI-----la--~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                             .....++||+|+++.     +.  +...+++..+.+.|+|||+|+++
T Consensus        64 -------~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   64 -------DPDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             -------GTTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -------CcccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence                   011256799999988     22  23456788999999999999975

...

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.05  E-value=2.6e-09  Score=101.93  Aligned_cols=119  Identities=14%  Similarity=0.206  Sum_probs=86.3

Q ss_pred             EEcCCCCCceeEEEccCcccCCCchhhHHHHHHHHHhhh--cCCCeeeeeee--------------------ecCCHHHH
Q 041970          176 IVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLI--KGGELFLDYGT--------------------VDIDPQVI  233 (327)
Q Consensus       176 I~P~W~~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~--~~g~~VLDvGc--------------------VDIDp~AV  233 (327)
                      |...+.-....+.++||+-+  =..+|..++...+.+.+  .++.+|||+||                    +|+++.|+
T Consensus        81 i~g~~~f~g~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al  158 (284)
T TIGR03533        81 LTNEAWFAGLEFYVDERVLI--PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDAL  158 (284)
T ss_pred             HcCCCeecCcEEEECCCCcc--CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHH
Confidence            44444433456888888776  23456667766676554  34579999999                    99999999


Q ss_pred             HHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---------------
Q 041970          234 KSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---------------  298 (327)
Q Consensus       234 ~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---------------  298 (327)
                      +.|++|++.|++. +++++.  .+|..        +            .+ +.++||+|++|+..               
T Consensus       159 ~~A~~n~~~~~~~-~~i~~~--~~D~~--------~------------~~-~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~  214 (284)
T TIGR03533       159 AVAEINIERHGLE-DRVTLI--QSDLF--------A------------AL-PGRKYDLIVSNPPYVDAEDMADLPAEYHH  214 (284)
T ss_pred             HHHHHHHHHcCCC-CcEEEE--ECchh--------h------------cc-CCCCccEEEECCCCCCccchhhCCHhhhc
Confidence            9999999999986 567764  45542        0            11 13579999999641               


Q ss_pred             -------------HHHHHHHHHHhhccCCCcEEEE
Q 041970          299 -------------NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       299 -------------~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                                   ..+..++..+.++|+|||++++
T Consensus       215 ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~  249 (284)
T TIGR03533       215 EPELALASGEDGLDLVRRILAEAADHLNENGVLVV  249 (284)
T ss_pred             CHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence                         2346678889999999999986

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.03  E-value=6.9e-10  Score=100.65  Aligned_cols=107  Identities=19%  Similarity=0.222  Sum_probs=75.3

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhc
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      ..+.+.+|..+++..+  +..++++|+  +++|++|||+||                     +|+++.+++.|++|++.+
T Consensus        45 ~~~~~~~~~~~~~p~~--~~~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~  120 (205)
T PRK13944         45 RPLPLFAGATISAPHM--VAMMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL  120 (205)
T ss_pred             CCcccCCCCEechHHH--HHHHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            4455666666654432  334444443  467889999999                     999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ++. +++++.  .+|..        +            ......+||+|+++.....   +.+.+.+.|+|||+|++.
T Consensus       121 ~~~-~~v~~~--~~d~~--------~------------~~~~~~~fD~Ii~~~~~~~---~~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        121 GYW-GVVEVY--HGDGK--------R------------GLEKHAPFDAIIVTAAAST---IPSALVRQLKDGGVLVIP  172 (205)
T ss_pred             CCC-CcEEEE--ECCcc--------c------------CCccCCCccEEEEccCcch---hhHHHHHhcCcCcEEEEE
Confidence            886 456654  35542        0            1112468999999976543   446788999999999874

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.00  E-value=4.5e-09  Score=101.45  Aligned_cols=120  Identities=15%  Similarity=0.219  Sum_probs=86.2

Q ss_pred             EEcCCCCCceeEEEccCcccCCCchhhHHHHHHHHHhhhcC-C-Ceeeeeee--------------------ecCCHHHH
Q 041970          176 IVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKG-G-ELFLDYGT--------------------VDIDPQVI  233 (327)
Q Consensus       176 I~P~W~~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~-g-~~VLDvGc--------------------VDIDp~AV  233 (327)
                      |...|.-....+.++|++-+  -..+|..+....+.+.++. + .+|||+||                    +|+++.|+
T Consensus        93 i~g~~~F~g~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al  170 (307)
T PRK11805         93 LTNEAWFCGLEFYVDERVLV--PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDAL  170 (307)
T ss_pred             HcCcceEcCcEEEECCCCcC--CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHH
Confidence            44555433456888898876  2445666666666655442 3 68999999                    99999999


Q ss_pred             HHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---------------
Q 041970          234 KSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---------------  298 (327)
Q Consensus       234 ~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---------------  298 (327)
                      +.|++|++.|++. +++++.  .+|..        +            .+ +.++||+|++|+..               
T Consensus       171 ~~A~~n~~~~~l~-~~i~~~--~~D~~--------~------------~l-~~~~fDlIvsNPPyi~~~~~~~l~~~~~~  226 (307)
T PRK11805        171 AVAEINIERHGLE-DRVTLI--ESDLF--------A------------AL-PGRRYDLIVSNPPYVDAEDMADLPAEYRH  226 (307)
T ss_pred             HHHHHHHHHhCCC-CcEEEE--ECchh--------h------------hC-CCCCccEEEECCCCCCccchhhcCHhhcc
Confidence            9999999999986 567764  45542        0            11 13579999999632               


Q ss_pred             -------------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          299 -------------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       299 -------------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                                   +.+..++..+.++|+|||++++-
T Consensus       227 eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E  262 (307)
T PRK11805        227 EPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE  262 (307)
T ss_pred             CccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                         23467788899999999999873

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.97  E-value=3.8e-09  Score=105.45  Aligned_cols=124  Identities=18%  Similarity=0.266  Sum_probs=93.3

Q ss_pred             CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhc
Q 041970          183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      +.+...+|+.-..-||.+-..|.--.++.++. +|++|||+||                   ||+++.|++.|++|+++|
T Consensus       188 ~g~~f~vdl~~g~ktG~flDqr~~R~~~~~~~-~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~N  266 (396)
T PRK15128        188 HGMKLLVDIQGGHKTGYYLDQRDSRLATRRYV-ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN  266 (396)
T ss_pred             CCEEEEEecccccccCcChhhHHHHHHHHHhc-CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            45678899988899999988777777777664 5899999999                   999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhc
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSY  311 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~  311 (327)
                      +++.+++++.  .+|++         +.+..       .....++||+|++|++.            .-+..+.....++
T Consensus       267 gl~~~~v~~i--~~D~~---------~~l~~-------~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~l  328 (396)
T PRK15128        267 KLDLSKAEFV--RDDVF---------KLLRT-------YRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQL  328 (396)
T ss_pred             CCCCCcEEEE--EccHH---------HHHHH-------HHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            9863456664  46653         11100       00014589999999874            2355666778899


Q ss_pred             cCCCcEEEE---eeccC
Q 041970          312 AKPGAVVGI---SGILS  325 (327)
Q Consensus       312 LkpGG~LIl---SGIl~  325 (327)
                      |+|||.|++   |+.+.
T Consensus       329 Lk~gG~lv~~scs~~~~  345 (396)
T PRK15128        329 LNPGGILLTFSCSGLMT  345 (396)
T ss_pred             cCCCeEEEEEeCCCcCC
Confidence            999999997   65553

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.95  E-value=8.9e-09  Score=103.26  Aligned_cols=118  Identities=18%  Similarity=0.261  Sum_probs=89.1

Q ss_pred             EEcCCCCCceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHH
Q 041970          176 IVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKS  235 (327)
Q Consensus       176 I~P~W~~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~  235 (327)
                      |...++-....+.++||+-+   ..|.|...++.+.+.+.++.+|||+||                    +|+|+.|++.
T Consensus       214 IlG~~~F~G~~f~V~p~vLI---PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~  290 (423)
T PRK14966        214 ILGVREFYGRRFAVNPNVLI---PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET  290 (423)
T ss_pred             EeeeeeecCcEEEeCCCccC---CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            45555533457889999766   478999999988877777789999999                    9999999999


Q ss_pred             HHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----------------
Q 041970          236 AHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----------------  298 (327)
Q Consensus       236 A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----------------  298 (327)
                      |++|++.|+.   ++++.  .+|..        +.           .....++||+|++|++.                 
T Consensus       291 AreNa~~~g~---rV~fi--~gDl~--------e~-----------~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP  346 (423)
T PRK14966        291 ARKNAADLGA---RVEFA--HGSWF--------DT-----------DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEP  346 (423)
T ss_pred             HHHHHHHcCC---cEEEE--Ecchh--------cc-----------ccccCCCccEEEECCCCCCcchhhhcchhhhcCH
Confidence            9999999875   35553  46642        00           01113579999999852                 


Q ss_pred             -----------HHHHHHHHHHhhccCCCcEEEE
Q 041970          299 -----------NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       299 -----------~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                                 +.+..+++.+.++|+|||++++
T Consensus       347 ~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil  379 (423)
T PRK14966        347 QIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL  379 (423)
T ss_pred             HHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence                       1355788888999999999876

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.92  E-value=7.9e-09  Score=96.20  Aligned_cols=98  Identities=19%  Similarity=0.279  Sum_probs=74.5

Q ss_pred             hHHHHHHHHHhhhcCCCeeeeeee----------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          202 TTKLCLLLLRSLIKGGELFLDYGT----------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       202 TT~lcLe~Le~~~~~g~~VLDvGc----------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      -..++..++.+.+.++.+|||+||                      +|+++.+++.|++|++.++.. .++++.  .++.
T Consensus        42 ~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-~~v~~~--~~d~  118 (247)
T PRK15451         42 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDVI--EGDI  118 (247)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEE--eCCh
Confidence            334455556666778899999999                      999999999999999998875 467764  3554


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHH-----HHHHHHHhhccCCCcEEEEeecc
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL-----~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .                     .. +...+|+|++|...+.+     ..++..+.+.|||||.|+++...
T Consensus       119 ~---------------------~~-~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        119 R---------------------DI-AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             h---------------------hC-CCCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            1                     11 12469999999755443     56889999999999999998754

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=7.1e-09  Score=98.99  Aligned_cols=94  Identities=23%  Similarity=0.355  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHhhhcCCC-eeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGE-LFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~-~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      |-|-+.++.+........ +|||+||                    +||+|.|++.|++|++.||+.  ++.+.  .+|+
T Consensus        94 ~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~--~~~~~--~~dl  169 (280)
T COG2890          94 PDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLV--RVLVV--QSDL  169 (280)
T ss_pred             CchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCc--cEEEE--eeec
Confidence            345666666443333233 7999999                    999999999999999999983  34332  3455


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh----------------------------HHHHHHHHHHhhc
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL----------------------------NPLLQLADHIVSY  311 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla----------------------------~vL~~L~p~i~~~  311 (327)
                      +                    ..+  .++||+||+|++.                            +++..++..+..+
T Consensus       170 f--------------------~~~--~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~  227 (280)
T COG2890         170 F--------------------EPL--RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDI  227 (280)
T ss_pred             c--------------------ccc--CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHH
Confidence            3                    112  4599999999751                            3567889999999


Q ss_pred             cCCCcEEEE
Q 041970          312 AKPGAVVGI  320 (327)
Q Consensus       312 LkpGG~LIl  320 (327)
                      |+|||.+++
T Consensus       228 l~~~g~l~l  236 (280)
T COG2890         228 LKPGGVLIL  236 (280)
T ss_pred             cCCCcEEEE
Confidence            999998876

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.88  E-value=1.4e-08  Score=94.31  Aligned_cols=103  Identities=14%  Similarity=0.282  Sum_probs=77.0

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      +...|.+|.+.. ++++|||+||                     +|+|+.+++.|++|++++|+. +++++.  .+|+. 
T Consensus        56 ~g~~L~~l~~~~-~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-~~i~~~--~gda~-  130 (234)
T PLN02781         56 EGLFLSMLVKIM-NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-HKINFI--QSDAL-  130 (234)
T ss_pred             HHHHHHHHHHHh-CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEE--EccHH-
Confidence            334455555553 4779999998                     999999999999999999997 678875  46652 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                              +.+..+     ..-...++||+|+.+.....+..+++.+.++|+|||.+++..+
T Consensus       131 --------~~L~~l-----~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~  179 (234)
T PLN02781        131 --------SALDQL-----LNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNT  179 (234)
T ss_pred             --------HHHHHH-----HhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence                    111100     0001146899999999999999999999999999999996444

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.86  E-value=2e-08  Score=94.30  Aligned_cols=119  Identities=19%  Similarity=0.293  Sum_probs=81.0

Q ss_pred             EEcCCCCCceeEEEccCcccCCCchhhHHHHHHHHHhhhc---CCCeeeeeee--------------------ecCCHHH
Q 041970          176 IVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIK---GGELFLDYGT--------------------VDIDPQV  232 (327)
Q Consensus       176 I~P~W~~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~---~g~~VLDvGc--------------------VDIDp~A  232 (327)
                      |...+.-....+.++||..+   ..+-|...++.+.....   ++.+|||+||                    +|+|+.|
T Consensus        46 i~g~~~f~g~~~~v~~~vf~---pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~a  122 (251)
T TIGR03704        46 VLGWAEFCGLRIAVDPGVFV---PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAA  122 (251)
T ss_pred             hcccCeEcCeEEEECCCCcC---CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHH
Confidence            34444433467889998765   44556666665544433   2358999999                    9999999


Q ss_pred             HHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--------------
Q 041970          233 IKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------------  298 (327)
Q Consensus       233 V~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------------  298 (327)
                      ++.|++|++.|++     ++.  .+|..        +.+.        ...  .++||+|++|++.              
T Consensus       123 l~~A~~N~~~~~~-----~~~--~~D~~--------~~l~--------~~~--~~~fDlVv~NPPy~~~~~~~~~~~e~~  177 (251)
T TIGR03704       123 VRCARRNLADAGG-----TVH--EGDLY--------DALP--------TAL--RGRVDILAANAPYVPTDAIALMPPEAR  177 (251)
T ss_pred             HHHHHHHHHHcCC-----EEE--Eeech--------hhcc--------hhc--CCCEeEEEECCCCCCchhhhcCCHHHH
Confidence            9999999999874     232  35542        0000        001  3579999999742              


Q ss_pred             ---------------HHHHHHHHHHhhccCCCcEEEEee
Q 041970          299 ---------------NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       299 ---------------~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                                     +++..++..+.++|+|||++++.-
T Consensus       178 ~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~  216 (251)
T TIGR03704       178 DHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET  216 (251)
T ss_pred             hCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                           134578888899999999999863

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.86  E-value=1.4e-08  Score=101.12  Aligned_cols=119  Identities=18%  Similarity=0.236  Sum_probs=96.6

Q ss_pred             ceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcC
Q 041970          184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNN  244 (327)
Q Consensus       184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNg  244 (327)
                      .+.+.+++.-.--||.---.|..-+++.++++ |++|||+-|                   ||++..|++.|++|+++||
T Consensus       186 g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg  264 (393)
T COG1092         186 GVKFLVDLVDGLKTGFFLDQRDNRRALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNG  264 (393)
T ss_pred             CeEEEEecCCcccceeeHHhHHHHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcC
Confidence            45677777767779999999999999999998 999999999                   9999999999999999999


Q ss_pred             CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhcc
Q 041970          245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSYA  312 (327)
Q Consensus       245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~L  312 (327)
                      ++.+++.+.  .+|++         +.+..       ......+||+||..+++            .-+..|.....+.|
T Consensus       265 ~~~~~~~~i--~~Dvf---------~~l~~-------~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL  326 (393)
T COG1092         265 LDGDRHRFI--VGDVF---------KWLRK-------AERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLL  326 (393)
T ss_pred             CCccceeee--hhhHH---------HHHHH-------HHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHc
Confidence            987777764  57764         12211       11124599999999974            45677888999999


Q ss_pred             CCCcEEEEe
Q 041970          313 KPGAVVGIS  321 (327)
Q Consensus       313 kpGG~LIlS  321 (327)
                      +|||++++|
T Consensus       327 ~pgG~l~~~  335 (393)
T COG1092         327 APGGTLVTS  335 (393)
T ss_pred             CCCCEEEEE
Confidence            999999886

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.85  E-value=1.7e-08  Score=91.95  Aligned_cols=104  Identities=16%  Similarity=0.285  Sum_probs=73.9

Q ss_pred             EccCcccCCCchhhH----HHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhc
Q 041970          189 LNPGLAFGTGEHATT----KLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       189 idPG~AFGTG~H~TT----~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      .|..++||.|.+-+.    ..+++++.  +++|++|||+||                     +|+++.+++.|++|++.+
T Consensus        48 ~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~  125 (215)
T TIGR00080        48 VDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL  125 (215)
T ss_pred             CCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence            344567888876543    34444443  468899999999                     999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ++.  ++++.  .+|..         +           ......+||+|+++....   .+.+.+.+.|+|||+|++.
T Consensus       126 g~~--~v~~~--~~d~~---------~-----------~~~~~~~fD~Ii~~~~~~---~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       126 GLD--NVIVI--VGDGT---------Q-----------GWEPLAPYDRIYVTAAGP---KIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             CCC--CeEEE--ECCcc---------c-----------CCcccCCCCEEEEcCCcc---cccHHHHHhcCcCcEEEEE
Confidence            984  46654  35542         0           011245899999886432   2345678899999999875

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.85  E-value=2.5e-08  Score=88.58  Aligned_cols=99  Identities=16%  Similarity=0.218  Sum_probs=72.5

Q ss_pred             hhhHHHHHHHHHhh--hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCC
Q 041970          200 HATTKLCLLLLRSL--IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPD  257 (327)
Q Consensus       200 H~TT~lcLe~Le~~--~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~  257 (327)
                      +.|...+.+.+-..  +.++.+|||+||                    +|+++.+++.|++|++.+++.  ++++.  .+
T Consensus        13 ~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~--~i~~~--~~   88 (187)
T PRK08287         13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG--NIDII--PG   88 (187)
T ss_pred             CCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CeEEE--ec
Confidence            34444444433333  357789999999                    999999999999999999875  46664  34


Q ss_pred             CCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          258 RTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       258 d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      +..         .           .+  .++||+|+++-....+..++..+.+.|+|||++++..+.
T Consensus        89 d~~---------~-----------~~--~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~  133 (187)
T PRK08287         89 EAP---------I-----------EL--PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFIL  133 (187)
T ss_pred             Cch---------h-----------hc--CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEec
Confidence            431         0           11  357999999876566777888999999999999997654

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.83  E-value=1.7e-08  Score=91.08  Aligned_cols=70  Identities=21%  Similarity=0.216  Sum_probs=54.7

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA  305 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~  305 (327)
                      +|+++.+++.|++|++.|+++ + +++.  .++..         +            +...++||+|++|... .+..++
T Consensus        75 iD~s~~~l~~A~~~~~~~~l~-~-i~~~--~~d~~---------~------------~~~~~~fDlV~~~~~~-~~~~~l  128 (187)
T PRK00107         75 VDSLGKKIAFLREVAAELGLK-N-VTVV--HGRAE---------E------------FGQEEKFDVVTSRAVA-SLSDLV  128 (187)
T ss_pred             EeCcHHHHHHHHHHHHHcCCC-C-EEEE--eccHh---------h------------CCCCCCccEEEEcccc-CHHHHH
Confidence            999999999999999999986 3 6664  34431         1            1124589999999753 456788


Q ss_pred             HHHhhccCCCcEEEEe
Q 041970          306 DHIVSYAKPGAVVGIS  321 (327)
Q Consensus       306 p~i~~~LkpGG~LIlS  321 (327)
                      ..+.++|+|||++++.
T Consensus       129 ~~~~~~LkpGG~lv~~  144 (187)
T PRK00107        129 ELCLPLLKPGGRFLAL  144 (187)
T ss_pred             HHHHHhcCCCeEEEEE
Confidence            8999999999998865

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.81  E-value=3.9e-08  Score=86.83  Aligned_cols=94  Identities=26%  Similarity=0.378  Sum_probs=70.6

Q ss_pred             hhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          200 HATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       200 H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      ++.|.++.+.+..  .++++|||+||                  +|+++.+++.|++|++.|++.   +++.  .+|.. 
T Consensus         5 ~~d~~~l~~~l~~--~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~~~~--~~d~~-   76 (179)
T TIGR00537         5 AEDSLLLEANLRE--LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVG---LDVV--MTDLF-   76 (179)
T ss_pred             CccHHHHHHHHHh--cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCc---eEEE--Ecccc-
Confidence            3567777777753  35679999999                  999999999999999999864   4443  34542 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------------------HHHHHHHHHHhhccCCCcE
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------------------NPLLQLADHIVSYAKPGAV  317 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------------------~vL~~L~p~i~~~LkpGG~  317 (327)
                              +           ..  .++||+|++|+..                        ..+..+++.+.++|+|||+
T Consensus        77 --------~-----------~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~  135 (179)
T TIGR00537        77 --------K-----------GV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGR  135 (179)
T ss_pred             --------c-----------cc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCE
Confidence                    0           11  3589999999642                        1356788999999999999


Q ss_pred             EEEee
Q 041970          318 VGISG  322 (327)
Q Consensus       318 LIlSG  322 (327)
                      +++..
T Consensus       136 ~~~~~  140 (179)
T TIGR00537       136 VQLIQ  140 (179)
T ss_pred             EEEEE
Confidence            88764

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.80  E-value=5.5e-08  Score=92.52  Aligned_cols=109  Identities=25%  Similarity=0.376  Sum_probs=76.1

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHH-HHhhh-cCC-Ceeeeeee--------------------ecCCHHHHHHHHHHHH
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLL-LRSLI-KGG-ELFLDYGT--------------------VDIDPQVIKSAHQNAA  241 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~-Le~~~-~~g-~~VLDvGc--------------------VDIDp~AV~~A~eNa~  241 (327)
                      ..+.++||.-.   -.|.|...++. ++.+. ..+ .+|||+||                    +|+++.|++.|++|++
T Consensus        83 ~~f~v~~~vli---Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~  159 (284)
T TIGR00536        83 LEFFVNEHVLI---PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAE  159 (284)
T ss_pred             eEEEECCCCcC---CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            45666666433   23445555544 34432 222 69999999                    9999999999999999


Q ss_pred             hcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----------------------
Q 041970          242 LNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----------------------  298 (327)
Q Consensus       242 lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----------------------  298 (327)
                      .|++. +++++.  .+|.+        +            .+ ...+||+|++|+..                       
T Consensus       160 ~~~~~-~~v~~~--~~d~~--------~------------~~-~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~g  215 (284)
T TIGR00536       160 KNQLE-HRVEFI--QSNLF--------E------------PL-AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVG  215 (284)
T ss_pred             HcCCC-CcEEEE--ECchh--------c------------cC-cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcC
Confidence            99986 467764  45653        0            11 13379999999631                       


Q ss_pred             -----HHHHHHHHHHhhccCCCcEEEE
Q 041970          299 -----NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       299 -----~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                           ..+..++..+.++|+|||++++
T Consensus       216 g~dgl~~~~~ii~~a~~~L~~gG~l~~  242 (284)
T TIGR00536       216 GDDGLNILRQIIELAPDYLKPNGFLVC  242 (284)
T ss_pred             CCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence                 1456788899999999999886

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.80  E-value=1.6e-08  Score=90.98  Aligned_cols=97  Identities=16%  Similarity=0.241  Sum_probs=67.2

Q ss_pred             CchhhHHHHHHHHHhh-hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCC
Q 041970          198 GEHATTKLCLLLLRSL-IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDR  258 (327)
Q Consensus       198 G~H~TT~lcLe~Le~~-~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d  258 (327)
                      +.|+++..+-+.++.+ ..++.+|||+||                  +|+++.+++.|+++++.+++.   +.+.  ..|
T Consensus        11 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~---v~~~--~~d   85 (195)
T TIGR00477        11 KKYGMTTTHSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP---LRTD--AYD   85 (195)
T ss_pred             HhhCCCCchHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC---ceeE--ecc
Confidence            3466655555555433 234679999999                  999999999999999998875   3332  123


Q ss_pred             CCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEE
Q 041970          259 TFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       259 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      ..         .          ..+  ..+||+|++|...     +....++..+.++|+|||++++
T Consensus        86 ~~---------~----------~~~--~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477        86 IN---------A----------AAL--NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             ch---------h----------ccc--cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            20         0          011  3579999998653     3456788999999999998543

Part of a tellurite-reducing operon tehA and tehB

>PRK14967 putative methyltransferase; Provisional

Probab=98.79  E-value=3.3e-08  Score=90.50  Aligned_cols=106  Identities=25%  Similarity=0.363  Sum_probs=76.4

Q ss_pred             eEEEccCcccCCCchhhHHHHHHHHHhh-hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCC
Q 041970          186 NIILNPGLAFGTGEHATTKLCLLLLRSL-IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNI  245 (327)
Q Consensus       186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~-~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv  245 (327)
                      .+.-.||+ |-.  ..-|++..+++.+. ++++++|||+||                   +|+++.+++.|++|++.|++
T Consensus         8 ~~~~~~g~-~~p--~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~   84 (223)
T PRK14967          8 ALLRAPGV-YRP--QEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV   84 (223)
T ss_pred             eeecCCCC-cCC--CCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence            45556664 222  22467888888765 467889999999                   99999999999999999986


Q ss_pred             CCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------------------HHH
Q 041970          246 GPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------------------NPL  301 (327)
Q Consensus       246 ~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------------------~vL  301 (327)
                      .   +.+.  .+|..         +           .. ..++||+|++|+..                        ..+
T Consensus        85 ~---~~~~--~~d~~---------~-----------~~-~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (223)
T PRK14967         85 D---VDVR--RGDWA---------R-----------AV-EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVL  138 (223)
T ss_pred             e---eEEE--ECchh---------h-----------hc-cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHH
Confidence            3   4443  34431         0           01 24689999999631                        125


Q ss_pred             HHHHHHHhhccCCCcEEEE
Q 041970          302 LQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       302 ~~L~p~i~~~LkpGG~LIl  320 (327)
                      ..++..+.++|||||++++
T Consensus       139 ~~~l~~a~~~Lk~gG~l~~  157 (223)
T PRK14967        139 DRLCDAAPALLAPGGSLLL  157 (223)
T ss_pred             HHHHHHHHHhcCCCcEEEE
Confidence            6678889999999999986

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.76  E-value=5.9e-08  Score=103.29  Aligned_cols=116  Identities=17%  Similarity=0.271  Sum_probs=86.5

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCC
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNI  245 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv  245 (327)
                      +...+|..-..-||..--.|.--+++.++. +|++|||+||                   ||+++.|++.|++|+++||+
T Consensus       508 ~~f~v~~~~~~~tG~flDqr~~R~~~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~  586 (702)
T PRK11783        508 AKLLVNLTDYLDTGLFLDHRPTRRMIGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGL  586 (702)
T ss_pred             EEEEEEcCCCCcceECHHHHHHHHHHHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            455666655577888766666666777665 4889999999                   99999999999999999998


Q ss_pred             CCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--------------HHHHHHHHHHhhc
Q 041970          246 GPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------------NPLLQLADHIVSY  311 (327)
Q Consensus       246 ~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------------~vL~~L~p~i~~~  311 (327)
                      +.+++++.  .+|++         +.+.        ..  .++||+||+|+..              ..+..++..+.++
T Consensus       587 ~~~~v~~i--~~D~~---------~~l~--------~~--~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~l  645 (702)
T PRK11783        587 SGRQHRLI--QADCL---------AWLK--------EA--REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRL  645 (702)
T ss_pred             CccceEEE--EccHH---------HHHH--------Hc--CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHH
Confidence            64467764  45642         1111        11  4589999999863              1345678888999


Q ss_pred             cCCCcEEEEee
Q 041970          312 AKPGAVVGISG  322 (327)
Q Consensus       312 LkpGG~LIlSG  322 (327)
                      |+|||.|+++.
T Consensus       646 L~~gG~l~~~~  656 (702)
T PRK11783        646 LRPGGTLYFSN  656 (702)
T ss_pred             cCCCCEEEEEe
Confidence            99999998864

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.75  E-value=1.2e-07  Score=77.07  Aligned_cols=87  Identities=16%  Similarity=0.263  Sum_probs=66.4

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .++++|||+||                    +|+++.+++.|++|++.+++.  ++++.  .++..         ...  
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~--~~~~~---------~~~--   82 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS--NIVIV--EGDAP---------EAL--   82 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC--ceEEE--ecccc---------ccC--
Confidence            45679999999                    999999999999999999875  35553  34431         000  


Q ss_pred             cccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          275 LSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                            ..  ...+||+|++.-....+..++..+.+.|+|||+|+++++.
T Consensus        83 ------~~--~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~~  124 (124)
T TIGR02469        83 ------ED--SLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNAIT  124 (124)
T ss_pred             ------hh--hcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEecC
Confidence                  00  1358999998765566778999999999999999999873

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.75  E-value=1.1e-08  Score=83.06  Aligned_cols=74  Identities=20%  Similarity=0.378  Sum_probs=54.4

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------  299 (327)
                      +|+||.+++.|++|++.+++. +++++.  .+|..         +...        .. ..++||+|++|+...      
T Consensus        29 vdi~~~~~~~a~~~~~~~~~~-~~~~~~--~~D~~---------~~~~--------~~-~~~~~D~Iv~npP~~~~~~~~   87 (117)
T PF13659_consen   29 VDIDPEAVELARRNLPRNGLD-DRVEVI--VGDAR---------DLPE--------PL-PDGKFDLIVTNPPYGPRSGDK   87 (117)
T ss_dssp             EESSHHHHHHHHHHCHHCTTT-TTEEEE--ESHHH---------HHHH--------TC-TTT-EEEEEE--STTSBTT--
T ss_pred             EEECHHHHHHHHHHHHHccCC-ceEEEE--ECchh---------hchh--------hc-cCceeEEEEECCCCccccccc
Confidence            999999999999999999986 567775  34431         1110        12 367899999998643      


Q ss_pred             -----HHHHHHHHHhhccCCCcEEEE
Q 041970          300 -----PLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       300 -----vL~~L~p~i~~~LkpGG~LIl  320 (327)
                           ....++..+.++|||||.+++
T Consensus        88 ~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   88 AALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             --GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence                 356789999999999999876

...

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.73  E-value=4.2e-08  Score=87.80  Aligned_cols=70  Identities=14%  Similarity=0.187  Sum_probs=53.8

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA  305 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~  305 (327)
                      +|+++.+++.|++|++.++++  ++++.  .+|..         +            +...++||+|++|.+ ..+..+.
T Consensus        72 iD~s~~~~~~a~~~~~~~~~~--~i~~i--~~d~~---------~------------~~~~~~fD~I~s~~~-~~~~~~~  125 (181)
T TIGR00138        72 LESNHKKVAFLREVKAELGLN--NVEIV--NGRAE---------D------------FQHEEQFDVITSRAL-ASLNVLL  125 (181)
T ss_pred             EeCcHHHHHHHHHHHHHhCCC--CeEEE--ecchh---------h------------ccccCCccEEEehhh-hCHHHHH
Confidence            999999999999999999885  36664  45541         1            112468999999984 4456677


Q ss_pred             HHHhhccCCCcEEEEe
Q 041970          306 DHIVSYAKPGAVVGIS  321 (327)
Q Consensus       306 p~i~~~LkpGG~LIlS  321 (327)
                      ..+.++|+|||++++.
T Consensus       126 ~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       126 ELTLNLLKVGGYFLAY  141 (181)
T ss_pred             HHHHHhcCCCCEEEEE
Confidence            8889999999998864

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.73  E-value=5.5e-08  Score=96.67  Aligned_cols=110  Identities=18%  Similarity=0.270  Sum_probs=78.5

Q ss_pred             eeEEEccCcccCCCchhhH-HH------HHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHH
Q 041970          185 TNIILNPGLAFGTGEHATT-KL------CLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSA  236 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT-~l------cLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A  236 (327)
                      ..+.+||+|.+++|.|..+ .+      .+.++.+.  +++|++|||+||                   +|+++.+++.|
T Consensus       127 y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A  206 (383)
T PRK11705        127 FEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLA  206 (383)
T ss_pred             HHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4588999999999998532 11      22222222  368899999999                   99999999999


Q ss_pred             HHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhc
Q 041970          237 HQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSY  311 (327)
Q Consensus       237 ~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~  311 (327)
                      ++|++  ++.   +++.  ..|..                     .+  .++||+|+++-..+     .+..++..+.+.
T Consensus       207 ~~~~~--~l~---v~~~--~~D~~---------------------~l--~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~  256 (383)
T PRK11705        207 QERCA--GLP---VEIR--LQDYR---------------------DL--NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRC  256 (383)
T ss_pred             HHHhc--cCe---EEEE--ECchh---------------------hc--CCCCCEEEEeCchhhCChHHHHHHHHHHHHH
Confidence            99984  332   4442  23321                     12  46899999985433     346788999999


Q ss_pred             cCCCcEEEEeecc
Q 041970          312 AKPGAVVGISGIL  324 (327)
Q Consensus       312 LkpGG~LIlSGIl  324 (327)
                      |||||+++++.|.
T Consensus       257 LkpGG~lvl~~i~  269 (383)
T PRK11705        257 LKPDGLFLLHTIG  269 (383)
T ss_pred             cCCCcEEEEEEcc
Confidence            9999999998664

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.72  E-value=3.4e-08  Score=92.82  Aligned_cols=103  Identities=21%  Similarity=0.367  Sum_probs=74.0

Q ss_pred             cCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcE
Q 041970          191 PGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKM  250 (327)
Q Consensus       191 PG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v  250 (327)
                      .|+.|||-     .+.|-..-.. ....+|||+||                    ||+++.+++.|++|+++|+++ +|+
T Consensus        25 ~~~~~~~D-----aiLL~~~~~~-~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~-~ri   97 (248)
T COG4123          25 CGFRYGTD-----AILLAAFAPV-PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE-ERI   97 (248)
T ss_pred             CccccccH-----HHHHHhhccc-ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch-hce
Confidence            46777763     2333333322 23679999999                    999999999999999999998 788


Q ss_pred             EEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---------------------HHHHHHHHHHh
Q 041970          251 KLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---------------------NPLLQLADHIV  309 (327)
Q Consensus       251 ~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---------------------~vL~~L~p~i~  309 (327)
                      ++.  ++|.         .+...        .. ...+||+|+||++.                     ..+..++....
T Consensus        98 ~v~--~~Di---------~~~~~--------~~-~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~  157 (248)
T COG4123          98 QVI--EADI---------KEFLK--------AL-VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAA  157 (248)
T ss_pred             eEe--hhhH---------HHhhh--------cc-cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHH
Confidence            875  4554         12111        11 23479999999862                     12567788899


Q ss_pred             hccCCCcEEEE
Q 041970          310 SYAKPGAVVGI  320 (327)
Q Consensus       310 ~~LkpGG~LIl  320 (327)
                      +.|||||++.+
T Consensus       158 ~~lk~~G~l~~  168 (248)
T COG4123         158 KLLKPGGRLAF  168 (248)
T ss_pred             HHccCCCEEEE
Confidence            99999999875

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.71  E-value=8.2e-08  Score=90.51  Aligned_cols=102  Identities=17%  Similarity=0.297  Sum_probs=74.0

Q ss_pred             cCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEec
Q 041970          195 FGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLV  255 (327)
Q Consensus       195 FGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~  255 (327)
                      +++|..+.|+.++..+.  +.++.+|||+||                   +|+++.+++.|++++..+    +++.+.  
T Consensus        33 ~~~gg~~~~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~----~~i~~~--  104 (263)
T PTZ00098         33 ISSGGIEATTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK----NKIEFE--  104 (263)
T ss_pred             CCCCchHHHHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC----CceEEE--
Confidence            45667777877777763  567889999999                   999999999999986542    345553  


Q ss_pred             CCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcC-Ch----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          256 PDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANI-LL----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANI-la----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .+|..         +          ..+ +.++||+|+++- +.    .....++..+.++|||||+|+++.+.
T Consensus       105 ~~D~~---------~----------~~~-~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        105 ANDIL---------K----------KDF-PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             ECCcc---------c----------CCC-CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            34431         0          012 256899999963 21    24567889999999999999998764

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.70  E-value=2.5e-08  Score=92.98  Aligned_cols=86  Identities=22%  Similarity=0.292  Sum_probs=64.6

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .+|.+|||+||                  +|+++.+|+.|+..+..|++..+   ..  +..         .+++.    
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~---y~--~~~---------~edl~----  119 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNID---YR--QAT---------VEDLA----  119 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccccc---ch--hhh---------HHHHH----
Confidence            47899999999                  99999999999999999998632   21  111         12222    


Q ss_pred             cccccCCCCCCCeeEEEEcCChHHH---HHHHHHHhhccCCCcEEEEeeccC
Q 041970          277 SHKIRGISETEEYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~vL---~~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                             ...++||+|+|+=..+.+   ..++..+.+++||||.+++|-|-.
T Consensus       120 -------~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         120 -------SAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             -------hcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence                   124799999998433222   347788999999999999998853

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.68  E-value=1.1e-07  Score=91.22  Aligned_cols=119  Identities=17%  Similarity=0.228  Sum_probs=87.8

Q ss_pred             CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhc
Q 041970          183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      +.+...+|+.-.=-||.-.-.|.--+++.++. .|++|||+-|                   ||.+..|++.|++|+++|
T Consensus        91 ~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~~-~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lN  169 (286)
T PF10672_consen   91 NGLKFRVDLTDGQKTGLFLDQRENRKWVRKYA-KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALN  169 (286)
T ss_dssp             TTEEEEEESSSSSSTSS-GGGHHHHHHHHHHC-TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCcceEcHHHHhhHHHHHHHc-CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            44677888877778999999999999998885 4899999988                   999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---------HHHHHHHHHHhhccCC
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---------NPLLQLADHIVSYAKP  314 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---------~vL~~L~p~i~~~Lkp  314 (327)
                      |++.+++++.  ..|++         +.+.        .+...++||+||.++++         .-+..|+..+.++|+|
T Consensus       170 g~~~~~~~~~--~~Dvf---------~~l~--------~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~  230 (286)
T PF10672_consen  170 GLDLDRHRFI--QGDVF---------KFLK--------RLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKP  230 (286)
T ss_dssp             T-CCTCEEEE--ES-HH---------HHHH--------HHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEE
T ss_pred             CCCccceEEE--ecCHH---------HHHH--------HHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            9986777764  45653         1111        01124689999999874         4567788899999999


Q ss_pred             CcEEEEe
Q 041970          315 GAVVGIS  321 (327)
Q Consensus       315 GG~LIlS  321 (327)
                      ||.|+++
T Consensus       231 gG~l~~~  237 (286)
T PF10672_consen  231 GGLLLTC  237 (286)
T ss_dssp             EEEEEEE
T ss_pred             CCEEEEE
Confidence            9998764

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.67  E-value=1.5e-07  Score=86.03  Aligned_cols=80  Identities=18%  Similarity=0.267  Sum_probs=60.5

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      +++|++|||+||                     +|+++.+++.|++|++.+++.  ++++.  .+|..        .   
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~--~v~~~--~gd~~--------~---  138 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD--NVEVI--VGDGT--------L---  138 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CeEEE--ECCcc--------c---
Confidence            468899999999                     999999999999999999874  46654  45542        0   


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                               .....++||+|+++-...   .+.+.+.+.|||||+|++
T Consensus       139 ---------~~~~~~~fD~I~~~~~~~---~~~~~l~~~LkpgG~lvi  174 (212)
T PRK13942        139 ---------GYEENAPYDRIYVTAAGP---DIPKPLIEQLKDGGIMVI  174 (212)
T ss_pred             ---------CCCcCCCcCEEEECCCcc---cchHHHHHhhCCCcEEEE
Confidence                     111256899999876433   334567789999999876

>TIGR00740 methyltransferase, putative

Probab=98.67  E-value=1.7e-07  Score=86.34  Aligned_cols=101  Identities=15%  Similarity=0.157  Sum_probs=73.3

Q ss_pred             chhhHHHHHHHHHhhhcCCCeeeeeee----------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecC
Q 041970          199 EHATTKLCLLLLRSLIKGGELFLDYGT----------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVP  256 (327)
Q Consensus       199 ~H~TT~lcLe~Le~~~~~g~~VLDvGc----------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~  256 (327)
                      .++...+...+.+....++.+|||+||                      +|+++.+++.|++|++..+.. .++++.  .
T Consensus        36 y~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-~~v~~~--~  112 (239)
T TIGR00740        36 YSNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEIL--C  112 (239)
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEE--E
Confidence            445555555555555667889999999                      999999999999998876654 356654  4


Q ss_pred             CCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-----HHHHHHHHhhccCCCcEEEEeecc
Q 041970          257 DRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       257 ~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-----L~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      +|..                     ... ...+|+|++|...+.     ...++..+.+.|+|||.++++...
T Consensus       113 ~d~~---------------------~~~-~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~  163 (239)
T TIGR00740       113 NDIR---------------------HVE-IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF  163 (239)
T ss_pred             CChh---------------------hCC-CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence            5541                     111 235899999865433     367889999999999999998653

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.67  E-value=1.3e-07  Score=97.10  Aligned_cols=81  Identities=21%  Similarity=0.372  Sum_probs=62.9

Q ss_pred             CCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          217 GELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       217 g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      +.+|||+||                    +|+++.|++.|++|++.|++. +++.+.  .+|.+        +       
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~-~~v~~~--~~D~~--------~-------  200 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT-DRIQII--HSNWF--------E-------  200 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc-cceeee--ecchh--------h-------
Confidence            468999999                    999999999999999999986 567664  45542        0       


Q ss_pred             cccccCCCCCCCeeEEEEcCCh-----------------------------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          277 SHKIRGISETEEYDVVIANILL-----------------------------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla-----------------------------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                           .+ ..++||+||+|+..                             +.+..++..+.++|+|||.+++.
T Consensus       201 -----~~-~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        201 -----NI-EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             -----hC-cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence                 11 14589999999741                             23456788899999999999874

>PLN02244 tocopherol O-methyltransferase

Probab=98.64  E-value=2.2e-07  Score=90.78  Aligned_cols=86  Identities=17%  Similarity=0.232  Sum_probs=66.5

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      +++++|||+||                   +|+++.+++.|+++++.+++. +++++.  .+|..         ++    
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~-~~v~~~--~~D~~---------~~----  180 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS-DKVSFQ--VADAL---------NQ----  180 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEE--EcCcc---------cC----
Confidence            46789999999                   999999999999999999886 567764  35542         10    


Q ss_pred             ccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEeec
Q 041970          276 SSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                            .+ +++.||+|+++-....   ...++.++.++|||||+|+++..
T Consensus       181 ------~~-~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        181 ------PF-EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             ------CC-CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence                  12 2578999999765433   35678899999999999998764

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.63  E-value=3.6e-07  Score=83.74  Aligned_cols=96  Identities=22%  Similarity=0.295  Sum_probs=69.3

Q ss_pred             hhHHHHHHHHHhhhc-CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSLIK-GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~-~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      |.|...++.+.+.+. .+.+|||+||                    +|+++.+++.|++|++.+++.  ++.+.  .+|.
T Consensus        71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~--~~d~  146 (251)
T TIGR03534        71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD--NVTFL--QSDW  146 (251)
T ss_pred             CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEE--ECch
Confidence            445555555544443 4469999999                    999999999999999999885  46654  4554


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----------------------------HHHHHHHHHhh
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----------------------------PLLQLADHIVS  310 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----------------------------vL~~L~p~i~~  310 (327)
                      .        +            .. ..++||+|++|+...                             .+..+++.+.+
T Consensus       147 ~--------~------------~~-~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~  205 (251)
T TIGR03534       147 F--------E------------PL-PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPR  205 (251)
T ss_pred             h--------c------------cC-cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHH
Confidence            2        0            11 256899999997421                             12367888999


Q ss_pred             ccCCCcEEEEe
Q 041970          311 YAKPGAVVGIS  321 (327)
Q Consensus       311 ~LkpGG~LIlS  321 (327)
                      +|+|||++++.
T Consensus       206 ~L~~gG~~~~~  216 (251)
T TIGR03534       206 LLKPGGWLLLE  216 (251)
T ss_pred             hcccCCEEEEE
Confidence            99999999875

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14968 putative methyltransferase; Provisional

Probab=98.62  E-value=4e-07  Score=79.58  Aligned_cols=93  Identities=28%  Similarity=0.420  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSM  264 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~  264 (327)
                      |.+.++++..  .++++|||+||                  +|+++.+++.|++|++.|++....+.+.  .+|..    
T Consensus        12 ~~~l~~~~~~--~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~--~~d~~----   83 (188)
T PRK14968         12 SFLLAENAVD--KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVI--RSDLF----   83 (188)
T ss_pred             HHHHHHhhhc--cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEE--ecccc----
Confidence            4555555543  56778999999                  8999999999999999998863225543  34432    


Q ss_pred             cccccchhhhcccccccCCCCCCCeeEEEEcCCh------------------------HHHHHHHHHHhhccCCCcEEEE
Q 041970          265 NERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------------------NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------------------~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                          +            .+ ...+||+|++|...                        ..+..++..+.++|||||.+++
T Consensus        84 ----~------------~~-~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~  146 (188)
T PRK14968         84 ----E------------PF-RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL  146 (188)
T ss_pred             ----c------------cc-cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence                0            11 13479999999642                        3356688999999999998765

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.61  E-value=2.9e-07  Score=83.94  Aligned_cols=102  Identities=15%  Similarity=0.123  Sum_probs=72.9

Q ss_pred             CCchhhHHHHHHHHHhhh---cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEe
Q 041970          197 TGEHATTKLCLLLLRSLI---KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHL  254 (327)
Q Consensus       197 TG~H~TT~lcLe~Le~~~---~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~  254 (327)
                      .|+.|||....+.+-..+   ..+.+|||+||                   +|+|+.|++.|++|++.|++.  ++++. 
T Consensus        31 ~~~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~--~v~~~-  107 (199)
T PRK10909         31 PGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG--NARVV-  107 (199)
T ss_pred             CCcCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC--cEEEE-
Confidence            356899988866555443   35789999999                   999999999999999999975  46654 


Q ss_pred             cCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC--hHHHHHHHHHHhh--ccCCCcEEEEe
Q 041970          255 VPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL--LNPLLQLADHIVS--YAKPGAVVGIS  321 (327)
Q Consensus       255 ~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl--a~vL~~L~p~i~~--~LkpGG~LIlS  321 (327)
                       .+|+.         +.+.        .  ..++||+|++|+.  .+....++..+..  .++|+|.++++
T Consensus       108 -~~D~~---------~~l~--------~--~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve  158 (199)
T PRK10909        108 -NTNAL---------SFLA--------Q--PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE  158 (199)
T ss_pred             -EchHH---------HHHh--------h--cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence             45542         1110        0  1346999999998  3444555555554  37899998876

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.59  E-value=3.5e-07  Score=82.51  Aligned_cols=83  Identities=20%  Similarity=0.289  Sum_probs=60.4

Q ss_pred             CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccc
Q 041970          216 GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSS  277 (327)
Q Consensus       216 ~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~  277 (327)
                      ++.+|||+||                  +|+++.+++.|+++++.+++.  .+++.  ..|..                 
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~--~v~~~--~~d~~-----------------   88 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLD--NLHTA--VVDLN-----------------   88 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCC--cceEE--ecChh-----------------
Confidence            4568888888                  999999999999999998875  24443  23431                 


Q ss_pred             ccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEE-eec
Q 041970          278 HKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGI-SGI  323 (327)
Q Consensus       278 ~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIl-SGI  323 (327)
                          .....++||+|++|...+     ....++..+.++|+|||++++ ..+
T Consensus        89 ----~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~  136 (197)
T PRK11207         89 ----NLTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM  136 (197)
T ss_pred             ----hCCcCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence                011145799999986532     456789999999999999554 443

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.59  E-value=2.3e-07  Score=87.05  Aligned_cols=88  Identities=25%  Similarity=0.416  Sum_probs=65.4

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      +++|++|||+||                     +|+++.+++.|++|++.+++.  ++++.  .++..         ++ 
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~--~v~~~--~~d~~---------~l-  140 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT--NVEFR--LGEIE---------AL-  140 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC--CEEEE--Ecchh---------hC-
Confidence            456777888877                     999999999999999998874  46653  34431         11 


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeeccC
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                               .+ ..+.||+|++|-..+   ....++..+.++|||||+|+++++..
T Consensus       141 ---------~~-~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~  186 (272)
T PRK11873        141 ---------PV-ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVL  186 (272)
T ss_pred             ---------CC-CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence                     11 246899999996432   23567889999999999999998753

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.57  E-value=2.1e-07  Score=79.81  Aligned_cols=86  Identities=24%  Similarity=0.395  Sum_probs=63.7

Q ss_pred             cCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          215 KGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       215 ~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      +.+.+|||+||                     +|+++.+|+.|+++++.+++.  ++++.  .+|..         ++. 
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~--ni~~~--~~d~~---------~l~-   67 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD--NIEFI--QGDIE---------DLP-   67 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST--TEEEE--ESBTT---------CGC-
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc--ccceE--Eeehh---------ccc-
Confidence            35677888888                     999999999999999999986  57775  35542         110 


Q ss_pred             hcccccccCCCCCCCeeEEEEcCCh---HHHHHHHHHHhhccCCCcEEEEeec
Q 041970          274 YLSSHKIRGISETEEYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla---~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                             ..+  .++||+|+++...   .....++..+.+.|++||.++++-.
T Consensus        68 -------~~~--~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~  111 (152)
T PF13847_consen   68 -------QEL--EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDP  111 (152)
T ss_dssp             -------GCS--STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------ccc--CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence                   001  2689999999643   3345678899999999999998754

...

>PLN02672 methionine S-methyltransferase

Probab=98.57  E-value=7.9e-07  Score=98.16  Aligned_cols=128  Identities=14%  Similarity=0.132  Sum_probs=85.6

Q ss_pred             eEEEcCcEEEEcCCC---CCceeEEEccCcccCCCchhhHHHHHHHHHhhhc---CCCeeeeeee---------------
Q 041970          167 PVEVTKGLWIVPEWN---VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIK---GGELFLDYGT---------------  225 (327)
Q Consensus       167 P~~vg~~l~I~P~W~---~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~---~g~~VLDvGc---------------  225 (327)
                      ++++. .+++.|.--   -....+.++||+-==   -|-|...+++|.....   ++.+|||+||               
T Consensus        67 ~~~~~-~~~~~~~~G~~~F~~l~~~V~p~VLIP---RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~  142 (1082)
T PLN02672         67 HFRIH-DLVLDDYEGFRNRKKLTMMEIPSIFIP---EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLP  142 (1082)
T ss_pred             ceEEe-eEEEcCCCCeEEecCCceeeCCCcccC---chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCC
Confidence            35664 466665321   123567777775322   1667777877765321   3569999999               


Q ss_pred             -----ecCCHHHHHHHHHHHHhcCCCC--------------CcEEEEecCCCCCCCCccccccchhhhcccccccCCCC-
Q 041970          226 -----VDIDPQVIKSAHQNAALNNIGP--------------KKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISE-  285 (327)
Q Consensus       226 -----VDIDp~AV~~A~eNa~lNgv~~--------------~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~-  285 (327)
                           +||++.|++.|++|+++|+++.              +++++.  .+|++.                    .... 
T Consensus       143 ~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~--~sDl~~--------------------~~~~~  200 (1082)
T PLN02672        143 SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFY--ESDLLG--------------------YCRDN  200 (1082)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEE--ECchhh--------------------hcccc
Confidence                 9999999999999999997631              356654  567530                    1111 


Q ss_pred             CCCeeEEEEcCCh-----------H------------------------------HHHHHHHHHhhccCCCcEEEE
Q 041970          286 TEEYDVVIANILL-----------N------------------------------PLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       286 ~~~fDlVvANIla-----------~------------------------------vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      ..+||+||+|+..           +                              .+.++++...++|+|||++++
T Consensus       201 ~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l  276 (1082)
T PLN02672        201 NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF  276 (1082)
T ss_pred             CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence            2379999999851           1                              125677888899999999886

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.57  E-value=1.6e-07  Score=89.54  Aligned_cols=112  Identities=17%  Similarity=0.314  Sum_probs=70.4

Q ss_pred             EEEccCcccCCCchhhHHHH--------HHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHH
Q 041970          187 IILNPGLAFGTGEHATTKLC--------LLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAH  237 (327)
Q Consensus       187 I~idPG~AFGTG~H~TT~lc--------Le~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~  237 (327)
                      +.|||.|.++.|.-++...-        ++.+.+.  +++|++|||+||                   +.+++.-++.|+
T Consensus        23 l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~  102 (273)
T PF02353_consen   23 LFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR  102 (273)
T ss_dssp             TTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH
T ss_pred             HhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH
Confidence            45778888777664443332        3333222  579999999999                   999999999999


Q ss_pred             HHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhcc
Q 041970          238 QNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYA  312 (327)
Q Consensus       238 eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~L  312 (327)
                      +.++..|+. +++++.+  .|.                     +.+  ..+||.||+--..+     -+..++..+.+.|
T Consensus       103 ~~~~~~gl~-~~v~v~~--~D~---------------------~~~--~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~L  156 (273)
T PF02353_consen  103 ERIREAGLE-DRVEVRL--QDY---------------------RDL--PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLL  156 (273)
T ss_dssp             HHHHCSTSS-STEEEEE--S-G---------------------GG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHS
T ss_pred             HHHHhcCCC-CceEEEE--eec---------------------ccc--CCCCCEEEEEechhhcChhHHHHHHHHHHHhc
Confidence            999999997 6788753  332                     122  45999999875433     4578899999999


Q ss_pred             CCCcEEEEeecc
Q 041970          313 KPGAVVGISGIL  324 (327)
Q Consensus       313 kpGG~LIlSGIl  324 (327)
                      ||||++++-.|.
T Consensus       157 kpgG~~~lq~i~  168 (273)
T PF02353_consen  157 KPGGRLVLQTIT  168 (273)
T ss_dssp             ETTEEEEEEEEE
T ss_pred             CCCcEEEEEecc
Confidence            999999987764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.57  E-value=3.5e-07  Score=82.30  Aligned_cols=88  Identities=22%  Similarity=0.264  Sum_probs=67.1

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      +.+|++|||+||                     +|+++.+++.|++|++.|++. +++.+.  .+|..         +..
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-~~v~~~--~~d~~---------~~l  105 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-NNIVLI--KGEAP---------EIL  105 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CCeEEE--Eechh---------hhH
Confidence            357788999998                     999999999999999999965 456653  34431         111


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      .        .  ..++||+|++|.-...+..++..+.+.|+|||+++++-+
T Consensus       106 ~--------~--~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        106 F--------T--INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             h--------h--cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence            0        1  135799999987666778889999999999999987543

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.53  E-value=7.9e-07  Score=82.96  Aligned_cols=108  Identities=21%  Similarity=0.389  Sum_probs=72.6

Q ss_pred             eEEEccCcccCCCchhhHHHHHHHHHhhh--cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc
Q 041970          186 NIILNPGLAFGTGEHATTKLCLLLLRSLI--KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~~--~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      .+.++|++..   --|.|...++++....  .++.+|||+||                    +|+++.+++.|++|++ +
T Consensus        79 ~~~~~~~~li---pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~  154 (275)
T PRK09328         79 DFKVSPGVLI---PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-H  154 (275)
T ss_pred             EEEECCCcee---CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-h
Confidence            4555555332   2355666666665332  35679999999                    9999999999999998 3


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------  298 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------  298 (327)
                      +.. .++.+.  .+|.+        .            .. ..++||+|++|+..                         
T Consensus       155 ~~~-~~i~~~--~~d~~--------~------------~~-~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g  210 (275)
T PRK09328        155 GLG-ARVEFL--QGDWF--------E------------PL-PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGG  210 (275)
T ss_pred             CCC-CcEEEE--Ecccc--------C------------cC-CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCC
Confidence            332 346654  34542        0            11 14689999999642                         


Q ss_pred             ----HHHHHHHHHHhhccCCCcEEEEe
Q 041970          299 ----NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       299 ----~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                          ..+..++..+.++|+|||++++.
T Consensus       211 ~~g~~~~~~~~~~~~~~Lk~gG~l~~e  237 (275)
T PRK09328        211 EDGLDFYRRIIEQAPRYLKPGGWLLLE  237 (275)
T ss_pred             CCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence                22356777888999999999873

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.52  E-value=3.4e-07  Score=85.34  Aligned_cols=90  Identities=19%  Similarity=0.254  Sum_probs=64.6

Q ss_pred             HHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccch
Q 041970          210 LRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGI  271 (327)
Q Consensus       210 Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l  271 (327)
                      |+.+..++.+|||+||                  +|+++.+++.|++|++.+++. +++++.  .++..         ++
T Consensus        38 l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~-~~v~~~--~~d~~---------~l  105 (255)
T PRK11036         38 LAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVS-DNMQFI--HCAAQ---------DI  105 (255)
T ss_pred             HHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc-cceEEE--EcCHH---------HH
Confidence            3333345679999999                  999999999999999998875 456654  34431         11


Q ss_pred             hhhcccccccCCCCCCCeeEEEEcCChHHH---HHHHHHHhhccCCCcEEEEe
Q 041970          272 VEYLSSHKIRGISETEEYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       272 ~~~~~~~~~~~~~~~~~fDlVvANIla~vL---~~L~p~i~~~LkpGG~LIlS  321 (327)
                      .         .. ..++||+|+++-..+.+   ..++..+.++|||||++++.
T Consensus       106 ~---------~~-~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        106 A---------QH-LETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             h---------hh-cCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            0         11 25689999998654322   46788999999999999764

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.50  E-value=7.3e-07  Score=90.20  Aligned_cols=100  Identities=23%  Similarity=0.245  Sum_probs=71.0

Q ss_pred             CchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCC
Q 041970          198 GEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDR  258 (327)
Q Consensus       198 G~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d  258 (327)
                      +...+|...++.+.  +.++.+|||+||                   +|+++.+++.|++|+...  . .++++.  .+|
T Consensus       250 ~~v~~te~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~--~-~~v~~~--~~d  322 (475)
T PLN02336        250 GGLETTKEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR--K-CSVEFE--VAD  322 (475)
T ss_pred             chHHHHHHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC--C-CceEEE--EcC
Confidence            34456666666664  467889999999                   999999999999998533  2 346654  355


Q ss_pred             CCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          259 TFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       259 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      ..         .          ..+ +.++||+|+++-...   -...++..+.+.|||||+++++...
T Consensus       323 ~~---------~----------~~~-~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  371 (475)
T PLN02336        323 CT---------K----------KTY-PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC  371 (475)
T ss_pred             cc---------c----------CCC-CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence            42         0          011 246899999974322   2356889999999999999998653

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.49  E-value=6.8e-07  Score=81.43  Aligned_cols=84  Identities=17%  Similarity=0.275  Sum_probs=62.2

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      +++|++|||+||                     +|+++.+++.|++|++.+++.  ++++.  .+|..         ++ 
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~v~~~--~~d~~---------~~-  108 (231)
T TIGR02752        43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH--NVELV--HGNAM---------EL-  108 (231)
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC--ceEEE--Eechh---------cC-
Confidence            356789999999                     999999999999999888764  46553  34431         00 


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEe
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                               .. +.++||+|+++...+   ....++..+.+.|+|||++++.
T Consensus       109 ---------~~-~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~  150 (231)
T TIGR02752       109 ---------PF-DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCL  150 (231)
T ss_pred             ---------CC-CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEE
Confidence                     11 256899999875422   2456788899999999999875

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.49  E-value=1.7e-06  Score=82.42  Aligned_cols=142  Identities=14%  Similarity=0.189  Sum_probs=101.3

Q ss_pred             hhHHHHhhcCceEEEcCcEEEEcCCCCCceeEEEccCcccCCCchhhHHHHHHHHHhhhc-----CCCeeeeeee-----
Q 041970          156 NWIKKAQESFHPVEVTKGLWIVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIK-----GGELFLDYGT-----  225 (327)
Q Consensus       156 DW~~~Wk~~f~P~~vg~~l~I~P~W~~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~-----~g~~VLDvGc-----  225 (327)
                      +-.+.|.+.++-+++   =+|..+|.-+.+.|...||+---   -|-|..-+++..+.++     .+..+||+||     
T Consensus        89 ~i~~~~~~R~~r~Pl---QYIlg~~~F~~l~l~~~pgVlIP---RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaI  162 (328)
T KOG2904|consen   89 SIRWACLQRYKRMPL---QYILGSQPFGDLDLVCKPGVLIP---RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAI  162 (328)
T ss_pred             HHHHHHHHHHhcCCh---hheeccCccCCceEEecCCeeec---CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHH
Confidence            345557776664444   24778888677888888887543   4677777777766553     3457999999     


Q ss_pred             ---------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEec--CCCCCCCCccccccchhhhcccccccCCCCCCC
Q 041970          226 ---------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLV--PDRTFPSSMNERVDGIVEYLSSHKIRGISETEE  288 (327)
Q Consensus       226 ---------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~--~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~  288 (327)
                                     ||.++.|+..|.||++++++. +++.++.-  .++.+        ++.          . ...++
T Consensus       163 slsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~-g~i~v~~~~me~d~~--------~~~----------~-l~~~~  222 (328)
T KOG2904|consen  163 SLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS-GRIEVIHNIMESDAS--------DEH----------P-LLEGK  222 (328)
T ss_pred             HHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-CceEEEecccccccc--------ccc----------c-cccCc
Confidence                           999999999999999999998 67887521  12221        111          0 12579


Q ss_pred             eeEEEEcCCh-----------------------------HHHHHHHHHHhhccCCCcEEEEeec
Q 041970          289 YDVVIANILL-----------------------------NPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       289 fDlVvANIla-----------------------------~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      +|++++|+..                             +.+..+..-+.+.|+|||.+.++=+
T Consensus       223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence            9999999852                             4556677778899999999988744

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.48  E-value=7.3e-07  Score=86.89  Aligned_cols=86  Identities=17%  Similarity=0.280  Sum_probs=63.7

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .+|.+||||||                  ||+++.+++.|+++++.++.. .++.+.  .++.         +++     
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~-~~i~~~--~~da---------e~l-----  192 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVT-STIEYL--CTTA---------EKL-----  192 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcc-cceeEE--ecCH---------HHh-----
Confidence            35779999999                  999999999999998887654 356654  2332         111     


Q ss_pred             cccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEeec
Q 041970          277 SHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                           .. ..++||+|++.-..+.   ...++..+.++|||||.++++-+
T Consensus       193 -----~~-~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        193 -----AD-EGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             -----hh-ccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence                 01 2568999999754332   25688899999999999998843

>PLN03075 nicotianamine synthase; Provisional

Probab=98.48  E-value=8.4e-07  Score=85.56  Aligned_cols=73  Identities=25%  Similarity=0.423  Sum_probs=56.2

Q ss_pred             ecCCHHHHHHHHHHHHh-cCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC----hHH
Q 041970          226 VDIDPQVIKSAHQNAAL-NNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL----LNP  300 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~l-Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl----a~v  300 (327)
                      +|+|+.|++.||++++. .++. +++++.  .+|+.         +.           ....++||+|+++.+    +..
T Consensus       155 iD~d~~ai~~Ar~~~~~~~gL~-~rV~F~--~~Da~---------~~-----------~~~l~~FDlVF~~ALi~~dk~~  211 (296)
T PLN03075        155 FDIDPSANDVARRLVSSDPDLS-KRMFFH--TADVM---------DV-----------TESLKEYDVVFLAALVGMDKEE  211 (296)
T ss_pred             EeCCHHHHHHHHHHhhhccCcc-CCcEEE--ECchh---------hc-----------ccccCCcCEEEEeccccccccc
Confidence            99999999999999964 7886 678886  36653         00           111368999999943    245


Q ss_pred             HHHHHHHHhhccCCCcEEEEe
Q 041970          301 LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       301 L~~L~p~i~~~LkpGG~LIlS  321 (327)
                      -.+++..+.+.|+|||+|++-
T Consensus       212 k~~vL~~l~~~LkPGG~Lvlr  232 (296)
T PLN03075        212 KVKVIEHLGKHMAPGALLMLR  232 (296)
T ss_pred             HHHHHHHHHHhcCCCcEEEEe
Confidence            677899999999999999875

>PLN02476 O-methyltransferase

Probab=98.47  E-value=7.4e-07  Score=85.24  Aligned_cols=106  Identities=14%  Similarity=0.250  Sum_probs=80.8

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      |.+...|.+|-+.. +.++|||+||                     +|+|+.+.+.|++|++++|+. +++++.  .|++
T Consensus       104 ~~~g~lL~~L~~~~-~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-~~I~li--~GdA  179 (278)
T PLN02476        104 PDQAQLLAMLVQIL-GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-HKVNVK--HGLA  179 (278)
T ss_pred             HHHHHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEE--EcCH
Confidence            34556666766664 4679999999                     999999999999999999998 688875  4665


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .         +.+..+     ..-...++||+|+...-..-+...+..+.++|+|||.+++-.++
T Consensus       180 ~---------e~L~~l-----~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL  230 (278)
T PLN02476        180 A---------ESLKSM-----IQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVL  230 (278)
T ss_pred             H---------HHHHHH-----HhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence            2         121100     00001358999999999888999999999999999999988765

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.46  E-value=2.3e-07  Score=85.24  Aligned_cols=89  Identities=24%  Similarity=0.371  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      ...++++|+  +++|++||||||                     +|+++..++.|++|++..++.  ++.+.  .+|.. 
T Consensus        61 ~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~--nv~~~--~gdg~-  133 (209)
T PF01135_consen   61 VARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID--NVEVV--VGDGS-  133 (209)
T ss_dssp             HHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH--SEEEE--ES-GG-
T ss_pred             HHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC--ceeEE--Ecchh-
Confidence            455666666  789999999999                     899999999999999999885  46664  45542 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                         .                .+....+||.|+.+--..   .+-..+.+.|++||+|+.
T Consensus       134 ---~----------------g~~~~apfD~I~v~~a~~---~ip~~l~~qL~~gGrLV~  170 (209)
T PF01135_consen  134 ---E----------------GWPEEAPFDRIIVTAAVP---EIPEALLEQLKPGGRLVA  170 (209)
T ss_dssp             ---G----------------TTGGG-SEEEEEESSBBS---S--HHHHHTEEEEEEEEE
T ss_pred             ---h----------------ccccCCCcCEEEEeeccc---hHHHHHHHhcCCCcEEEE
Confidence               0                122357899999987554   233567888999999986

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.45  E-value=1.1e-06  Score=81.48  Aligned_cols=104  Identities=19%  Similarity=0.295  Sum_probs=83.1

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      |-|-.+|.+|-+.. +.++||++||                     +|+||...+.|++|.++.|++ +++++... +|.
T Consensus        45 ~e~g~~L~~L~~~~-~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-~~i~~~~~-gda  121 (219)
T COG4122          45 PETGALLRLLARLS-GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-DRIELLLG-GDA  121 (219)
T ss_pred             hhHHHHHHHHHHhc-CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEEec-CcH
Confidence            55667788887764 6789999999                     999999999999999999998 66776532 454


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeeccC
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                      +         +.+.        . ...++||+|+...-.......++.+.++|+|||.+++-.++.
T Consensus       122 l---------~~l~--------~-~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~  169 (219)
T COG4122         122 L---------DVLS--------R-LLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLF  169 (219)
T ss_pred             H---------HHHH--------h-ccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence            2         1221        1 126899999999988889999999999999999999877664

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.43  E-value=1.7e-06  Score=87.37  Aligned_cols=115  Identities=12%  Similarity=0.100  Sum_probs=78.8

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcC
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNN  244 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNg  244 (327)
                      ..+.+.|+..|=+- ...|...++.+.+++  .+|.+|||+||                  +|+++.|++.|++|++.|+
T Consensus       265 ~~f~~~~~~F~q~n-~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~  343 (443)
T PRK13168        265 LRLAFSPRDFIQVN-AQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNG  343 (443)
T ss_pred             eEEEECCCCeEEcC-HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence            46778887755554 444555555554443  46789999999                  9999999999999999999


Q ss_pred             CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      +.  ++++.  .+|+.         +....      ... ...+||+|++|+...-+...+..+.+ ++|++.+++|
T Consensus       344 ~~--~v~~~--~~d~~---------~~l~~------~~~-~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        344 LD--NVTFY--HANLE---------EDFTD------QPW-ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             CC--ceEEE--EeChH---------Hhhhh------hhh-hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence            85  36654  45541         10000      001 13579999999886545566666555 6899998887

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.42  E-value=2.6e-06  Score=77.18  Aligned_cols=82  Identities=13%  Similarity=0.229  Sum_probs=60.6

Q ss_pred             hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          214 IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       214 ~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      .+++++|||+||                  +|+++.+++.|++|++.+++.  .+++.  .+|..        +      
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~--~v~~~--~~d~~--------~------  137 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLH--NVSVR--HGDGW--------K------  137 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCC--ceEEE--ECCcc--------c------
Confidence            357789999999                  999999999999999999885  35653  35531        0      


Q ss_pred             ccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970          276 SSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                            .....++||+|+++-...   .+.+.+.+.|+|||+++++=
T Consensus       138 ------~~~~~~~fD~I~~~~~~~---~~~~~l~~~L~~gG~lv~~~  175 (212)
T PRK00312        138 ------GWPAYAPFDRILVTAAAP---EIPRALLEQLKEGGILVAPV  175 (212)
T ss_pred             ------CCCcCCCcCEEEEccCch---hhhHHHHHhcCCCcEEEEEE
Confidence                  111246899999886433   33467789999999998763

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.40  E-value=2.2e-06  Score=83.13  Aligned_cols=103  Identities=15%  Similarity=0.153  Sum_probs=70.6

Q ss_pred             ccCCCc-hhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEe
Q 041970          194 AFGTGE-HATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHL  254 (327)
Q Consensus       194 AFGTG~-H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~  254 (327)
                      .||+|. +|+....+-.+.. +++|++|||.||                  +|+|+.+++.|++|++.+|+. + +.+. 
T Consensus       160 ~~~~~~l~~~la~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~-~-i~~~-  235 (329)
T TIGR01177       160 FFKPGSMDPKLARAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-D-FFVK-  235 (329)
T ss_pred             ccCCCCCCHHHHHHHHHHhC-CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC-C-CeEE-
Confidence            344443 4444333332222 466778888888                  999999999999999999986 3 5543 


Q ss_pred             cCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          255 VPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       255 ~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                       .+|..         ++          .. ..++||+|++|++.            +.+..++..+.+.|+|||++++.
T Consensus       236 -~~D~~---------~l----------~~-~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       236 -RGDAT---------KL----------PL-SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             -ecchh---------cC----------Cc-ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence             45542         11          11 14689999999642            33577889999999999998764

This family is found exclusively in the Archaea.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.40  E-value=4.3e-07  Score=85.86  Aligned_cols=85  Identities=18%  Similarity=0.328  Sum_probs=62.0

Q ss_pred             CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCc----EEEEecCCCCCCCCccccccchhh
Q 041970          216 GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKK----MKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       216 ~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~----v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      -|++|||+||                  ||+.+.+|++|++.+..+-+....    +++.  ..++         +    
T Consensus        89 ~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~--~~~~---------E----  153 (282)
T KOG1270|consen   89 LGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYE--DTDV---------E----  153 (282)
T ss_pred             CCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehh--hcch---------h----
Confidence            4789999999                  999999999999997766544222    2221  1111         1    


Q ss_pred             hcccccccCCCCCCCeeEEEEcCCh-HH--HHHHHHHHhhccCCCcEEEEeeccC
Q 041970          274 YLSSHKIRGISETEEYDVVIANILL-NP--LLQLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla-~v--L~~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                              ..  .++||.|||--.. ++  +..++..+.++|||||.|++|-|-.
T Consensus       154 --------~~--~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  154 --------GL--TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             --------hc--ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence                    12  4679999987443 33  4677888999999999999998854

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.40  E-value=1.1e-06  Score=79.63  Aligned_cols=75  Identities=9%  Similarity=0.123  Sum_probs=53.6

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------  299 (327)
                      +|+++.+++.|++|++.+++.  ++++.  .+|..        +.+.        ..+ +.++||+|++|..-.      
T Consensus        70 VD~s~~~i~~a~~~~~~~~~~--~v~~~--~~d~~--------~~l~--------~~~-~~~~~D~V~~~~~~p~~~~~~  128 (202)
T PRK00121         70 IEVHEPGVGKALKKIEEEGLT--NLRLL--CGDAV--------EVLL--------DMF-PDGSLDRIYLNFPDPWPKKRH  128 (202)
T ss_pred             EEechHHHHHHHHHHHHcCCC--CEEEE--ecCHH--------HHHH--------HHc-CccccceEEEECCCCCCCccc
Confidence            999999999999999999874  46664  34431        1110        001 256799999985321      


Q ss_pred             -----HHHHHHHHHhhccCCCcEEEEe
Q 041970          300 -----PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       300 -----vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                           ....++..+.+.|||||+|+++
T Consensus       129 ~~~~~~~~~~l~~i~~~LkpgG~l~i~  155 (202)
T PRK00121        129 HKRRLVQPEFLALYARKLKPGGEIHFA  155 (202)
T ss_pred             cccccCCHHHHHHHHHHcCCCCEEEEE
Confidence                 1456789999999999999886

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.37  E-value=1.4e-06  Score=79.10  Aligned_cols=76  Identities=12%  Similarity=0.245  Sum_probs=56.8

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLL  302 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~  302 (327)
                      +|+++.+++.|++|++.+|+. +++++.  .+|..        .           ...  .++||+|+++-..+   ...
T Consensus        29 id~s~~~~~~a~~~~~~~gl~-~~i~~~--~~d~~--------~-----------~~~--~~~fD~I~~~~~l~~~~~~~   84 (224)
T smart00828       29 YTISPEQAEVGRERIRALGLQ-GRIRIF--YRDSA--------K-----------DPF--PDTYDLVFGFEVIHHIKDKM   84 (224)
T ss_pred             EECCHHHHHHHHHHHHhcCCC-cceEEE--ecccc--------c-----------CCC--CCCCCEeehHHHHHhCCCHH
Confidence            899999999999999999887 567764  24431        0           011  35899999864332   245


Q ss_pred             HHHHHHhhccCCCcEEEEeeccC
Q 041970          303 QLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       303 ~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                      .++..+.++|+|||+++++.+..
T Consensus        85 ~~l~~~~~~LkpgG~l~i~~~~~  107 (224)
T smart00828       85 DLFSNISRHLKDGGHLVLADFIA  107 (224)
T ss_pred             HHHHHHHHHcCCCCEEEEEEccc
Confidence            78889999999999999998753

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.36  E-value=2.7e-06  Score=80.12  Aligned_cols=76  Identities=16%  Similarity=0.207  Sum_probs=51.8

Q ss_pred             ecCCHHHHHHHHHHHHh--cCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---H
Q 041970          226 VDIDPQVIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---P  300 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~l--Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---v  300 (327)
                      +|+++.+++.|++++..  ++.. +++++.  .+|..         ++          ++ +++.||+|+++...+   .
T Consensus       104 vD~S~~ml~~A~~r~~~~~~~~~-~~i~~~--~~d~~---------~l----------p~-~~~sfD~V~~~~~l~~~~d  160 (261)
T PLN02233        104 LDFSSEQLAVAASRQELKAKSCY-KNIEWI--EGDAT---------DL----------PF-DDCYFDAITMGYGLRNVVD  160 (261)
T ss_pred             EECCHHHHHHHHHHhhhhhhccC-CCeEEE--Ecccc---------cC----------CC-CCCCEeEEEEecccccCCC
Confidence            99999999999987642  2221 345554  34431         11          12 256899999986432   3


Q ss_pred             HHHHHHHHhhccCCCcEEEEeecc
Q 041970          301 LLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       301 L~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      ...++.++.+.|||||++++.-+-
T Consensus       161 ~~~~l~ei~rvLkpGG~l~i~d~~  184 (261)
T PLN02233        161 RLKAMQEMYRVLKPGSRVSILDFN  184 (261)
T ss_pred             HHHHHHHHHHHcCcCcEEEEEECC
Confidence            456789999999999999887553

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1.3e-06  Score=80.26  Aligned_cols=87  Identities=22%  Similarity=0.339  Sum_probs=65.7

Q ss_pred             HHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          205 LCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       205 lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      +++++|+  +++|++||+|||                  +|+++.-++.|++|++..|+. + +.+.  ++|..      
T Consensus        63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-n-V~v~--~gDG~------  130 (209)
T COG2518          63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-N-VTVR--HGDGS------  130 (209)
T ss_pred             HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-c-eEEE--ECCcc------
Confidence            3444554  678999999999                  999999999999999999986 2 6554  57752      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                                    ..+++..+||.|+.+--+..+   -+.+.+.||+||+++.
T Consensus       131 --------------~G~~~~aPyD~I~Vtaaa~~v---P~~Ll~QL~~gGrlv~  167 (209)
T COG2518         131 --------------KGWPEEAPYDRIIVTAAAPEV---PEALLDQLKPGGRLVI  167 (209)
T ss_pred             --------------cCCCCCCCcCEEEEeeccCCC---CHHHHHhcccCCEEEE
Confidence                          123346899999988665543   2456778999999875

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.34  E-value=1.4e-06  Score=81.10  Aligned_cols=84  Identities=19%  Similarity=0.284  Sum_probs=58.9

Q ss_pred             HHHHHHhhh-cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970          206 CLLLLRSLI-KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSM  264 (327)
Q Consensus       206 cLe~Le~~~-~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~  264 (327)
                      ...+++.+. .++.+|||+||                    +|+++.+++.|+++    ++     ++.  .+|..    
T Consensus        18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~~-----~~~--~~d~~----   82 (255)
T PRK14103         18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----GV-----DAR--TGDVR----   82 (255)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----CC-----cEE--EcChh----
Confidence            334455442 46789999999                    99999999999763    23     232  24431    


Q ss_pred             cccccchhhhcccccccCCCCCCCeeEEEEcCChHHH---HHHHHHHhhccCCCcEEEEe
Q 041970          265 NERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL---~~L~p~i~~~LkpGG~LIlS  321 (327)
                                       .+...++||+|++|...+.+   ..++..+.+.|||||++++.
T Consensus        83 -----------------~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         83 -----------------DWKPKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             -----------------hCCCCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence                             11124689999999765433   56788999999999999885

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.33  E-value=4.1e-06  Score=75.06  Aligned_cols=85  Identities=14%  Similarity=0.229  Sum_probs=60.8

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .++.+|||+||                    +|+||.+++.|++|++.+++.  ++++.  .+|..         +..  
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~--~v~~~--~~d~~---------~~~--  103 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK--NVEVI--EGSAP---------ECL--  103 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--CeEEE--ECchH---------HHH--
Confidence            47789999999                    999999999999999999874  46654  34431         000  


Q ss_pred             cccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          275 LSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                            ..+  ...+|.|+.... ..+..+++.+.++|+|||++++.-.
T Consensus       104 ------~~~--~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        104 ------AQL--APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             ------hhC--CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence                  011  224566665432 3457788999999999999988753

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.31  E-value=3.5e-06  Score=84.75  Aligned_cols=98  Identities=18%  Similarity=0.213  Sum_probs=71.0

Q ss_pred             hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          200 HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       200 H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      -+..+++..+|.  ..+|++|||+||                    +|+++.+++.+++|++.+|+.   +++.  .+|.
T Consensus       230 d~~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~---~~~~--~~D~  302 (427)
T PRK10901        230 DAAAQLAATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK---ATVI--VGDA  302 (427)
T ss_pred             CHHHHHHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---eEEE--EcCc
Confidence            345566666764  467899999999                    999999999999999999975   3443  3554


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHHHHHhhccCC
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLADHIVSYAKP  314 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~p~i~~~Lkp  314 (327)
                      .         +.         ......++||.|++|..-                         .....++..+.+.|||
T Consensus       303 ~---------~~---------~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp  364 (427)
T PRK10901        303 R---------DP---------AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP  364 (427)
T ss_pred             c---------cc---------hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            2         00         001124579999988741                         1234678889999999


Q ss_pred             CcEEEEee
Q 041970          315 GAVVGISG  322 (327)
Q Consensus       315 GG~LIlSG  322 (327)
                      ||++++|-
T Consensus       365 GG~lvyst  372 (427)
T PRK10901        365 GGTLLYAT  372 (427)
T ss_pred             CCEEEEEe
Confidence            99999875

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.31  E-value=3.6e-06  Score=75.87  Aligned_cols=106  Identities=14%  Similarity=0.181  Sum_probs=74.6

Q ss_pred             CCCchhhHHHHHHHHHhhhc---CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970          196 GTGEHATTKLCLLLLRSLIK---GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLH  253 (327)
Q Consensus       196 GTG~H~TT~lcLe~Le~~~~---~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~  253 (327)
                      |.++.||+....+.+-..+.   .|.+|||++|                   ||+|+.|++.+++|++.|++. +++++.
T Consensus        26 ~~~~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~-~~~~~~  104 (189)
T TIGR00095        26 GGSTRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG-EQAEVV  104 (189)
T ss_pred             CCCCCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc-ccEEEE
Confidence            45689999999998877653   6889999999                   999999999999999999986 456654


Q ss_pred             ecCCCCCCCCccccccchhhhcccccccCCC-CCCCeeEEEEcCCh--HHHHHHHHHH--hhccCCCcEEEEe
Q 041970          254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGIS-ETEEYDVVIANILL--NPLLQLADHI--VSYAKPGAVVGIS  321 (327)
Q Consensus       254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~-~~~~fDlVvANIla--~vL~~L~p~i--~~~LkpGG~LIlS  321 (327)
                        .+|+.         +.+.        ... ....||+|+.++..  .....++..+  ..+|+++|.+++-
T Consensus       105 --~~D~~---------~~l~--------~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E  158 (189)
T TIGR00095       105 --RNSAL---------RALK--------FLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE  158 (189)
T ss_pred             --ehhHH---------HHHH--------HhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence              45542         1110        011 12248999999864  2233344443  3468999988763

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.31  E-value=2.8e-06  Score=78.83  Aligned_cols=88  Identities=20%  Similarity=0.307  Sum_probs=61.4

Q ss_pred             HHHHHHHhh-hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCC
Q 041970          205 LCLLLLRSL-IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSS  263 (327)
Q Consensus       205 lcLe~Le~~-~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~  263 (327)
                      ...++++.+ ..++++|||+||                    +|+++.+++.|+++..       ++.+.  .+|..   
T Consensus        19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-------~~~~~--~~d~~---   86 (258)
T PRK01683         19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-------DCQFV--EADIA---   86 (258)
T ss_pred             HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-------CCeEE--ECchh---
Confidence            344445443 356789999999                    9999999999998741       23342  24431   


Q ss_pred             ccccccchhhhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEee
Q 041970          264 MNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       264 ~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSG  322 (327)
                                        ......+||+|++|...+.   ...++..+.+.|||||.++++.
T Consensus        87 ------------------~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683         87 ------------------SWQPPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             ------------------ccCCCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence                              0112458999999976543   3568899999999999998863

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.29  E-value=4.3e-06  Score=81.56  Aligned_cols=103  Identities=17%  Similarity=0.292  Sum_probs=71.8

Q ss_pred             EccCcccCCCchhhHH-HHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCC
Q 041970          189 LNPGLAFGTGEHATTK-LCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIG  246 (327)
Q Consensus       189 idPG~AFGTG~H~TT~-lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~  246 (327)
                      +..|+.|.+...|... ..+++++  ++++++|||+||                     +|+++.+++.|++|++.+|++
T Consensus        54 ~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~  131 (322)
T PRK13943         54 YDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE  131 (322)
T ss_pred             cCCCcccccCCcHHHHHHHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            4677778777777542 3334332  467899999999                     899999999999999999975


Q ss_pred             CCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          247 PKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       247 ~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                        ++.+.  .+|..         +           .....++||+|+++.-...   +...+.+.|+|||++++
T Consensus       132 --nV~~i--~gD~~---------~-----------~~~~~~~fD~Ii~~~g~~~---ip~~~~~~LkpgG~Lvv  178 (322)
T PRK13943        132 --NVIFV--CGDGY---------Y-----------GVPEFAPYDVIFVTVGVDE---VPETWFTQLKEGGRVIV  178 (322)
T ss_pred             --cEEEE--eCChh---------h-----------cccccCCccEEEECCchHH---hHHHHHHhcCCCCEEEE
Confidence              45553  45541         0           1112357999998754332   23456789999999876

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.27  E-value=6.6e-06  Score=82.69  Aligned_cols=105  Identities=19%  Similarity=0.215  Sum_probs=75.5

Q ss_pred             cCCC----chhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcE
Q 041970          195 FGTG----EHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKM  250 (327)
Q Consensus       195 FGTG----~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v  250 (327)
                      |..|    .-+.++++..+|.  ..+|++|||+||                    +|+++.+++.+++|++.+|+. .++
T Consensus       215 ~~~G~~~~Qd~~s~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v  291 (426)
T TIGR00563       215 FEEGWVTVQDASAQWVATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-IKA  291 (426)
T ss_pred             hhCCeEEEECHHHHHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-eEE
Confidence            5556    4577888888886  567899999999                    999999999999999999986 333


Q ss_pred             EEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHH
Q 041970          251 KLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLA  305 (327)
Q Consensus       251 ~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~  305 (327)
                      .+  ..+|..         ..         ......++||.|+.+..-                         .....++
T Consensus       292 ~~--~~~d~~---------~~---------~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL  351 (426)
T TIGR00563       292 ET--KDGDGR---------GP---------SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEIL  351 (426)
T ss_pred             EE--eccccc---------cc---------cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHH
Confidence            32  234431         00         001124679999987420                         1235688


Q ss_pred             HHHhhccCCCcEEEEee
Q 041970          306 DHIVSYAKPGAVVGISG  322 (327)
Q Consensus       306 p~i~~~LkpGG~LIlSG  322 (327)
                      ..+.+.|||||+|+.|-
T Consensus       352 ~~a~~~LkpgG~lvyst  368 (426)
T TIGR00563       352 DAIWPLLKTGGTLVYAT  368 (426)
T ss_pred             HHHHHhcCCCcEEEEEe
Confidence            88999999999999873

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK04457 spermidine synthase; Provisional

Probab=98.27  E-value=3.1e-06  Score=80.04  Aligned_cols=98  Identities=17%  Similarity=0.183  Sum_probs=70.2

Q ss_pred             hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          200 HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       200 H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      ++-|+..+..+... .++++|||+||                    ||+||.+++.|++++..++.. .+++++  .+|.
T Consensus        51 ~~y~~~m~~~l~~~-~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-~rv~v~--~~Da  126 (262)
T PRK04457         51 LAYTRAMMGFLLFN-PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG-ERFEVI--EADG  126 (262)
T ss_pred             CHHHHHHHHHHhcC-CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC-CceEEE--ECCH
Confidence            45677666555322 35679999999                    999999999999998877653 567775  3554


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-------HHHHHHHHhhccCCCcEEEE
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-------L~~L~p~i~~~LkpGG~LIl  320 (327)
                      .         +.+.        .  ..++||+|+.|.....       ..+++..+.++|+|||++++
T Consensus       127 ~---------~~l~--------~--~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi  175 (262)
T PRK04457        127 A---------EYIA--------V--HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV  175 (262)
T ss_pred             H---------HHHH--------h--CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence            1         1111        1  1458999999864321       25788999999999999987

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.27  E-value=7.3e-06  Score=79.19  Aligned_cols=114  Identities=18%  Similarity=0.203  Sum_probs=76.3

Q ss_pred             ceeEEEccCcccCCCchhhHHHHHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhc
Q 041970          184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      ...+.+.|+..|-+....+-++. +.+.+++  .++.+|||+||                  +|+++.|++.|++|++.|
T Consensus       140 ~~~~~~~~~sF~Q~n~~~~~~l~-~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~  218 (315)
T PRK03522        140 GVPLFIRPQSFFQTNPAVAAQLY-ATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAEL  218 (315)
T ss_pred             CEEEEECCCeeeecCHHHHHHHH-HHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            35688999888887665554433 3333333  25789999999                  999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHH-HHHHHHHhhccCCCcEEEEee
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL-LQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL-~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      ++.  ++++.  .+|+.         +...        .  ..++||+|+.|+...-+ ..+...+ ..++|++.+++|-
T Consensus       219 ~l~--~v~~~--~~D~~---------~~~~--------~--~~~~~D~Vv~dPPr~G~~~~~~~~l-~~~~~~~ivyvsc  274 (315)
T PRK03522        219 GLT--NVQFQ--ALDST---------QFAT--------A--QGEVPDLVLVNPPRRGIGKELCDYL-SQMAPRFILYSSC  274 (315)
T ss_pred             CCC--ceEEE--EcCHH---------HHHH--------h--cCCCCeEEEECCCCCCccHHHHHHH-HHcCCCeEEEEEC
Confidence            984  46664  35541         1110        0  13479999999875432 2333333 3367888888763

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.26  E-value=8.9e-06  Score=80.60  Aligned_cols=113  Identities=14%  Similarity=0.146  Sum_probs=76.7

Q ss_pred             ceeEEEccCcccCCCchhhHHHHHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhc
Q 041970          184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      ...+.+.|+-.|=| .+......++.+.+++  .++.+|||+||                  ||+|+.|++.|++|++.|
T Consensus       200 g~~~~~~~~~F~Q~-n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~  278 (374)
T TIGR02085       200 DVPLVIRPQSFFQT-NPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQML  278 (374)
T ss_pred             CEEEEECCCccccC-CHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHc
Confidence            35688999876554 3444444445555543  35789999999                  999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-HHHHHHHHhhccCCCcEEEEe
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-L~~L~p~i~~~LkpGG~LIlS  321 (327)
                      +++  ++++.  .+|..         +...        ..  ..+||+|+.|+...- ...++..+. .++|++.+++|
T Consensus       279 ~~~--~~~~~--~~d~~---------~~~~--------~~--~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       279 GLD--NLSFA--ALDSA---------KFAT--------AQ--MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             CCC--cEEEE--ECCHH---------HHHH--------hc--CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence            985  46664  34531         1110        01  246999999997643 334444444 47899998887

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.25  E-value=3.7e-06  Score=77.85  Aligned_cols=80  Identities=20%  Similarity=0.357  Sum_probs=57.5

Q ss_pred             CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccc
Q 041970          216 GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSS  277 (327)
Q Consensus       216 ~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~  277 (327)
                      ++.+|||+||                  +|+++.+++.|++|....       .+.  .+|..         .+      
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~-------~~~--~~d~~---------~~------   97 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAAD-------HYL--AGDIE---------SL------   97 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCC-------CEE--EcCcc---------cC------
Confidence            4578999999                  999999999999875311       121  23431         10      


Q ss_pred             ccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          278 HKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       278 ~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                          .+ ..++||+|++|...+   .+..++..+.+.|+|||.++++.+.
T Consensus        98 ----~~-~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258         98 ----PL-ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             ----cC-CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence                11 256899999997643   3456788999999999999999754

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.24  E-value=9.9e-06  Score=73.60  Aligned_cols=97  Identities=21%  Similarity=0.305  Sum_probs=67.1

Q ss_pred             chhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970          199 EHATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       199 ~H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~  260 (327)
                      ..+..+..+++|.+...++++|||+||                  +|+++.+++.|++++..++.. +++.+.  .+|..
T Consensus        38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~-~~i~~~--~~d~~  114 (219)
T TIGR02021        38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVA-GNVEFE--VNDLL  114 (219)
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEE--ECChh
Confidence            344555566677642346789999999                  999999999999999888764 356654  34431


Q ss_pred             CCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEe
Q 041970          261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                                           ..  .++||+|+++-..     ..+..++..+.+.+++++.+.++
T Consensus       115 ---------------------~~--~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       115 ---------------------SL--CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             ---------------------hC--CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence                                 11  3679999986332     23455677788888877776654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.22  E-value=6.7e-06  Score=77.58  Aligned_cols=85  Identities=15%  Similarity=0.087  Sum_probs=63.2

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      .++|++|||+||                     +|+++.+++.+++|++++|+.  .+.+.  ..|..         .+.
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~--~v~~~--~~D~~---------~~~  135 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL--NVAVT--NFDGR---------VFG  135 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC--cEEEe--cCCHH---------Hhh
Confidence            467889999999                     999999999999999999985  35553  34431         000


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCC-------------------------hHHHHHHHHHHhhccCCCcEEEEee
Q 041970          273 EYLSSHKIRGISETEEYDVVIANIL-------------------------LNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIl-------------------------a~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                               .  ..++||.|+.|..                         +....+++....++|||||+|+.|.
T Consensus       136 ---------~--~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst  199 (264)
T TIGR00446       136 ---------A--AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST  199 (264)
T ss_pred             ---------h--hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence                     0  1346999999853                         1133568888999999999999885

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.22  E-value=6.5e-06  Score=83.12  Aligned_cols=98  Identities=19%  Similarity=0.294  Sum_probs=71.2

Q ss_pred             hhhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCC
Q 041970          200 HATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDR  258 (327)
Q Consensus       200 H~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d  258 (327)
                      .++.++...++.  .++|++|||+||                     +|+++.+++.+++|++++|+. + +++.  .+|
T Consensus       236 d~~s~lv~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~-v~~~--~~D  309 (444)
T PRK14902        236 DESSMLVAPALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-N-IETK--ALD  309 (444)
T ss_pred             ChHHHHHHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-e-EEEE--eCC
Confidence            455666666664  467889999999                     999999999999999999986 3 6654  455


Q ss_pred             CCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHHHHHhhccC
Q 041970          259 TFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLADHIVSYAK  313 (327)
Q Consensus       259 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~p~i~~~Lk  313 (327)
                      ..         ++.        ..+  .++||+|++|..-                         .....++..+.++||
T Consensus       310 ~~---------~~~--------~~~--~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk  370 (444)
T PRK14902        310 AR---------KVH--------EKF--AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK  370 (444)
T ss_pred             cc---------ccc--------chh--cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            42         110        011  2579999999641                         112457888999999


Q ss_pred             CCcEEEEee
Q 041970          314 PGAVVGISG  322 (327)
Q Consensus       314 pGG~LIlSG  322 (327)
                      |||+|+.|.
T Consensus       371 pGG~lvyst  379 (444)
T PRK14902        371 KGGILVYST  379 (444)
T ss_pred             CCCEEEEEc
Confidence            999999764

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.22  E-value=1.3e-05  Score=76.92  Aligned_cols=101  Identities=18%  Similarity=0.291  Sum_probs=80.3

Q ss_pred             chhhHHHHHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCC
Q 041970          199 EHATTKLCLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPD  257 (327)
Q Consensus       199 ~H~TT~lcLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~  257 (327)
                      ..+..+.-++++.+.  +++|++|||+||                   +++++...+.|++-++.-|++ +++++..  .
T Consensus        53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~-~~v~v~l--~  129 (283)
T COG2230          53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE-DNVEVRL--Q  129 (283)
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC-cccEEEe--c
Confidence            456677777777765  579999999999                   999999999999999999998 6777753  1


Q ss_pred             CCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-----HHHHHHHHhhccCCCcEEEEeeccC
Q 041970          258 RTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       258 d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-----L~~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                      |.                     +.+  .++||-||+=-..+.     ....+..+.+.|+|||++++=.|..
T Consensus       130 d~---------------------rd~--~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         130 DY---------------------RDF--EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             cc---------------------ccc--ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence            21                     223  567999999765543     5678899999999999999988764

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.21  E-value=4.1e-06  Score=78.02  Aligned_cols=84  Identities=19%  Similarity=0.320  Sum_probs=55.6

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      .++|.+|||+||                     +|+++.+++.|++.++..+..  ++++.  .+|+.         ++ 
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~--~i~~v--~~da~---------~l-  110 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ--NIEFV--QGDAE---------DL-  110 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEE--E-BTT---------B--
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC--CeeEE--EcCHH---------Hh-
Confidence            467889999999                     999999999999999988764  56664  45541         11 


Q ss_pred             hhcccccccCCCCCCCeeEEEEcC-ChH--HHHHHHHHHhhccCCCcEEEEe
Q 041970          273 EYLSSHKIRGISETEEYDVVIANI-LLN--PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANI-la~--vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                               ++ +++.||+|++-. +.+  ...+.+.++.+.|||||++++-
T Consensus       111 ---------p~-~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~il  152 (233)
T PF01209_consen  111 ---------PF-PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVIL  152 (233)
T ss_dssp             ----------S--TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------cC-CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence                     12 367899999754 322  2466789999999999998753

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.21  E-value=4.4e-06  Score=76.56  Aligned_cols=104  Identities=20%  Similarity=0.332  Sum_probs=76.8

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      +-..|..|-+.. +.++||++||                     +|+||...+.|++|++..|+. ++|++.  .|++. 
T Consensus        33 ~g~lL~~l~~~~-~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-~~I~~~--~gda~-  107 (205)
T PF01596_consen   33 TGQLLQMLVRLT-RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-DRIEVI--EGDAL-  107 (205)
T ss_dssp             HHHHHHHHHHHH-T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-GGEEEE--ES-HH-
T ss_pred             HHHHHHHHHHhc-CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-CcEEEE--EeccH-
Confidence            334455555543 4579999999                     999999999999999999997 789886  36642 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                              +.+..+     ..-...++||+|+-.--..-+......+.++|+|||.+++..++
T Consensus       108 --------~~l~~l-----~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l  157 (205)
T PF01596_consen  108 --------EVLPEL-----ANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVL  157 (205)
T ss_dssp             --------HHHHHH-----HHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred             --------hhHHHH-----HhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEcccc
Confidence                    221100     00011358999999998888888888999999999999998765

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK06922 hypothetical protein; Provisional

Probab=98.20  E-value=7.7e-06  Score=86.17  Aligned_cols=86  Identities=20%  Similarity=0.327  Sum_probs=61.5

Q ss_pred             CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          216 GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       216 ~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      +|.+|||+||                    +|+++.+++.|++|+..++.   ++.+.  .+|..         ++    
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~---~ie~I--~gDa~---------dL----  479 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR---SWNVI--KGDAI---------NL----  479 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC---CeEEE--EcchH---------hC----
Confidence            5779999999                    99999999999999876653   24442  34431         10    


Q ss_pred             ccccccCCCCCCCeeEEEEcCChH----------------HHHHHHHHHhhccCCCcEEEEe-ecc
Q 041970          276 SSHKIRGISETEEYDVVIANILLN----------------PLLQLADHIVSYAKPGAVVGIS-GIL  324 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~----------------vL~~L~p~i~~~LkpGG~LIlS-GIl  324 (327)
                           ....+.++||+|++|.+.+                .+..++..+.+.|||||++++. |++
T Consensus       480 -----p~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~  540 (677)
T PRK06922        480 -----SSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM  540 (677)
T ss_pred             -----ccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence                 0011256899999996443                3467788999999999999986 444

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.19  E-value=9.8e-06  Score=81.96  Aligned_cols=96  Identities=26%  Similarity=0.290  Sum_probs=70.4

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      ++..++..+|.  ..+|++|||+||                     +|+++.+++.+++|++.+|+.  ++++.  .+|.
T Consensus       237 ~~s~l~~~~l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~--~v~~~--~~Da  310 (445)
T PRK14904        237 PTQALACLLLN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT--IIETI--EGDA  310 (445)
T ss_pred             HHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC--eEEEE--eCcc
Confidence            34556665554  457899999999                     999999999999999999985  46654  3453


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHHHHHhhccCC
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLADHIVSYAKP  314 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~p~i~~~Lkp  314 (327)
                      .                     .....++||+|+.+..-                         .....++..+.+.|||
T Consensus       311 ~---------------------~~~~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp  369 (445)
T PRK14904        311 R---------------------SFSPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP  369 (445)
T ss_pred             c---------------------ccccCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            1                     11124579999987431                         1234578899999999


Q ss_pred             CcEEEEeec
Q 041970          315 GAVVGISGI  323 (327)
Q Consensus       315 GG~LIlSGI  323 (327)
                      ||+++.|--
T Consensus       370 gG~lvystc  378 (445)
T PRK14904        370 GGVLVYATC  378 (445)
T ss_pred             CcEEEEEeC
Confidence            999999863

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.18  E-value=1.1e-05  Score=72.86  Aligned_cols=75  Identities=11%  Similarity=0.153  Sum_probs=53.6

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---HHHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---NPLL  302 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---~vL~  302 (327)
                      +|+++.+++.|++|++.++.. .++.+.  .+|..         +.          .. ..++||+|+++-..   ....
T Consensus        82 ~D~s~~~~~~a~~~~~~~~~~-~~~~~~--~~d~~---------~~----------~~-~~~~~D~I~~~~~l~~~~~~~  138 (239)
T PRK00216         82 LDFSEGMLAVGREKLRDLGLS-GNVEFV--QGDAE---------AL----------PF-PDNSFDAVTIAFGLRNVPDID  138 (239)
T ss_pred             EeCCHHHHHHHHHhhcccccc-cCeEEE--ecccc---------cC----------CC-CCCCccEEEEecccccCCCHH
Confidence            899999999999999887664 345554  34431         00          11 24689999987432   2345


Q ss_pred             HHHHHHhhccCCCcEEEEeec
Q 041970          303 QLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       303 ~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      .++..+.+.|+|||.+++.++
T Consensus       139 ~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        139 KALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             HHHHHHHHhccCCcEEEEEEe
Confidence            678899999999999998765

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.18  E-value=4.4e-06  Score=81.48  Aligned_cols=63  Identities=30%  Similarity=0.516  Sum_probs=45.5

Q ss_pred             CCeeeeeee--------------------ecCCHHHHHHHHHHHHhc-CCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          217 GELFLDYGT--------------------VDIDPQVIKSAHQNAALN-NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       217 g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN-gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      +.++|||||                    +|||+.|++.|++|++.| ++. +++++.. ..+.         ..+.   
T Consensus       115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~-~~I~~~~-~~~~---------~~i~---  180 (321)
T PRK11727        115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN-GAIRLRL-QKDS---------KAIF---  180 (321)
T ss_pred             CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc-CcEEEEE-ccch---------hhhh---
Confidence            468999999                    999999999999999999 887 6777642 2221         0110   


Q ss_pred             ccccccCC-CCCCCeeEEEEcCCh
Q 041970          276 SSHKIRGI-SETEEYDVVIANILL  298 (327)
Q Consensus       276 ~~~~~~~~-~~~~~fDlVvANIla  298 (327)
                           ..+ ...++||+|+||+..
T Consensus       181 -----~~i~~~~~~fDlivcNPPf  199 (321)
T PRK11727        181 -----KGIIHKNERFDATLCNPPF  199 (321)
T ss_pred             -----hcccccCCceEEEEeCCCC
Confidence                 011 125689999999874

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.15  E-value=1.3e-05  Score=72.13  Aligned_cols=80  Identities=20%  Similarity=0.345  Sum_probs=57.3

Q ss_pred             CCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          217 GELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       217 g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      +.+|||+||                    +|+++.+++.++++...      ++.+.  .+|..         +.     
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~------~~~~~--~~d~~---------~~-----   92 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE------NVQFI--CGDAE---------KL-----   92 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC------CCeEE--ecchh---------hC-----
Confidence            468999999                    99999999999887541      23332  24431         00     


Q ss_pred             cccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          277 SHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                           .. ..++||+|++|-..+   ....++..+.+.|+|||.++++...
T Consensus        93 -----~~-~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~  137 (240)
T TIGR02072        93 -----PL-EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG  137 (240)
T ss_pred             -----CC-CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence                 11 256899999997653   3456889999999999999998654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.15  E-value=4.6e-06  Score=78.66  Aligned_cols=124  Identities=18%  Similarity=0.224  Sum_probs=75.8

Q ss_pred             CceEEEcCcEEEEcCCCC-----CceeEEEccCccc-CCCchhhHHHHH-HHHHhhhc-CCCeeeeeee-----------
Q 041970          165 FHPVEVTKGLWIVPEWNV-----QATNIILNPGLAF-GTGEHATTKLCL-LLLRSLIK-GGELFLDYGT-----------  225 (327)
Q Consensus       165 f~P~~vg~~l~I~P~W~~-----~~~~I~idPG~AF-GTG~H~TT~lcL-e~Le~~~~-~g~~VLDvGc-----------  225 (327)
                      |-.-+-| -+.+.|.|..     +...-.+.+..+| .+|++...+-.+ ++|.+++. .+.+|||+||           
T Consensus        27 fd~a~~G-y~~ll~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~  105 (272)
T PRK11088         27 FDCAKEG-YVNLLPVQHKRSKDPGDNKEMMQARRAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALAD  105 (272)
T ss_pred             CccccCc-eEEeccccccCCCCCCcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHH
Confidence            4333333 3445676651     1122234444555 777765554444 66766654 4478999999           


Q ss_pred             ------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEE
Q 041970          226 ------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVI  293 (327)
Q Consensus       226 ------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVv  293 (327)
                                  +|+++.+++.|+++.  .+     +.+.  .+|..         ++          ++ .++.||+|+
T Consensus       106 ~~~~~~~~~v~giD~s~~~l~~A~~~~--~~-----~~~~--~~d~~---------~l----------p~-~~~sfD~I~  156 (272)
T PRK11088        106 ALPEITTMQLFGLDISKVAIKYAAKRY--PQ-----VTFC--VASSH---------RL----------PF-ADQSLDAII  156 (272)
T ss_pred             hcccccCCeEEEECCCHHHHHHHHHhC--CC-----CeEE--Eeecc---------cC----------CC-cCCceeEEE
Confidence                        799999999998763  11     3332  23321         10          12 256899999


Q ss_pred             EcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970          294 ANILLNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       294 ANIla~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      ++...    ....++.+.|||||+|++..
T Consensus       157 ~~~~~----~~~~e~~rvLkpgG~li~~~  181 (272)
T PRK11088        157 RIYAP----CKAEELARVVKPGGIVITVT  181 (272)
T ss_pred             EecCC----CCHHHHHhhccCCCEEEEEe
Confidence            87642    23578899999999999763

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.15  E-value=1.9e-05  Score=75.52  Aligned_cols=84  Identities=19%  Similarity=0.314  Sum_probs=63.1

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .++++|||+||                    +|. |.+++.|++|++.+|+. +++++.  .+|.+.       +     
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~-~rv~~~--~~d~~~-------~-----  211 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGI--AVDIYK-------E-----  211 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc-ceEEEE--ecCccC-------C-----
Confidence            56789999999                    887 78999999999999987 677764  466530       0     


Q ss_pred             cccccccCCCCCCCeeEEE-EcCCh----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          275 LSSHKIRGISETEEYDVVI-ANILL----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVv-ANIla----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                             .   ...+|+|+ +|++.    +....++..+.+.|+|||++++..+.
T Consensus       212 -------~---~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~  256 (306)
T TIGR02716       212 -------S---YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV  256 (306)
T ss_pred             -------C---CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence                   1   12479865 66553    33467899999999999999887653

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.14  E-value=1e-05  Score=73.56  Aligned_cols=82  Identities=21%  Similarity=0.302  Sum_probs=58.0

Q ss_pred             CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccc
Q 041970          216 GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSS  277 (327)
Q Consensus       216 ~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~  277 (327)
                      ++.++||+||                  +|+++.|++.+++-++.++++   ++..  ..|+.                 
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~---i~~~--~~Dl~-----------------   87 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD---IRTR--VADLN-----------------   87 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T---EEEE--E-BGC-----------------
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce---eEEE--Eecch-----------------
Confidence            3569999999                  999999999999999999886   4443  23331                 


Q ss_pred             ccccCCCCCCCeeEEEEcCC-----hHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          278 HKIRGISETEEYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       278 ~~~~~~~~~~~fDlVvANIl-----a~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                          .....++||+|++-..     .+.+..++..+.+.++|||++++-..
T Consensus        88 ----~~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   88 ----DFDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             ----CBS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ----hccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence                1112468999998533     34556788899999999999876443

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.13  E-value=1.5e-05  Score=80.31  Aligned_cols=100  Identities=19%  Similarity=0.262  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      +..++...+|.  .++|++|||+||                     +|+++.+++.+++|++++|+.  .+++.  .+|.
T Consensus       239 ~~s~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~--~v~~~--~~D~  312 (434)
T PRK14901        239 RSAQLVAPLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK--SIKIL--AADS  312 (434)
T ss_pred             HHHHHHHHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC--eEEEE--eCCh
Confidence            34555555553  467899999999                     899999999999999999986  36653  3453


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHHHHHhhccCC
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLADHIVSYAKP  314 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~p~i~~~Lkp  314 (327)
                      .         .+..      .... ..++||.|+.|..-                         ....+++..+.+.|||
T Consensus       313 ~---------~~~~------~~~~-~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp  376 (434)
T PRK14901        313 R---------NLLE------LKPQ-WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP  376 (434)
T ss_pred             h---------hccc------cccc-ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            1         0000      0000 13579999997530                         1245788899999999


Q ss_pred             CcEEEEee
Q 041970          315 GAVVGISG  322 (327)
Q Consensus       315 GG~LIlSG  322 (327)
                      ||+|+.|-
T Consensus       377 gG~lvyst  384 (434)
T PRK14901        377 GGTLVYAT  384 (434)
T ss_pred             CCEEEEEe
Confidence            99999774

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.12  E-value=1.2e-05  Score=78.94  Aligned_cols=97  Identities=16%  Similarity=0.106  Sum_probs=67.1

Q ss_pred             hhhHHHHHHHHHhh--hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCC
Q 041970          200 HATTKLCLLLLRSL--IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPD  257 (327)
Q Consensus       200 H~TT~lcLe~Le~~--~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~  257 (327)
                      |.+..++-..++..  ..++.+|||+||                    +|+++.+++.|++|+..+++     ++.  .+
T Consensus        95 ~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i-----~~i--~g  167 (340)
T PLN02490         95 HWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-----KII--EG  167 (340)
T ss_pred             cchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCC-----eEE--ec
Confidence            44556665566544  246789999999                    99999999999998765443     332  34


Q ss_pred             CCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEeec
Q 041970          258 RTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       258 d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      |..         ++          .+ +.+.||+|++|-..+.   ...++.++.+.|||||++++.+.
T Consensus       168 D~e---------~l----------p~-~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~  216 (340)
T PLN02490        168 DAE---------DL----------PF-PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP  216 (340)
T ss_pred             cHH---------hC----------CC-CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            431         10          11 2568999999854322   24578899999999999988764

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.09  E-value=2e-05  Score=71.32  Aligned_cols=86  Identities=14%  Similarity=0.205  Sum_probs=69.9

Q ss_pred             hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      +++|++++||||                    +|-|+.|++..++|+++.|++  ++++.  .|++.         +.+ 
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~--n~~vv--~g~Ap---------~~L-   97 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD--NLEVV--EGDAP---------EAL-   97 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC--cEEEE--eccch---------Hhh-
Confidence            578999999999                    999999999999999999975  56653  56652         111 


Q ss_pred             hcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          274 YLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                                .....+|.|+-+-- ..+..++..+..+|||||+++.--|.
T Consensus        98 ----------~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242          98 ----------PDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             ----------cCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence                      11226999999987 88888999999999999999987664

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.09  E-value=6.3e-06  Score=63.29  Aligned_cols=68  Identities=19%  Similarity=0.315  Sum_probs=47.8

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---HHHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---NPLL  302 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---~vL~  302 (327)
                      +|+++.+++.|+++...+++.     +.  .++..         ++          ++ +++.||+|+++-..   ....
T Consensus        25 ~D~~~~~~~~~~~~~~~~~~~-----~~--~~d~~---------~l----------~~-~~~sfD~v~~~~~~~~~~~~~   77 (95)
T PF08241_consen   25 IDISEEMLEQARKRLKNEGVS-----FR--QGDAE---------DL----------PF-PDNSFDVVFSNSVLHHLEDPE   77 (95)
T ss_dssp             EES-HHHHHHHHHHTTTSTEE-----EE--ESBTT---------SS----------SS--TT-EEEEEEESHGGGSSHHH
T ss_pred             EeCCHHHHHHHHhcccccCch-----he--eehHH---------hC----------cc-ccccccccccccceeeccCHH
Confidence            899999999999987665542     32  23331         11          12 36799999999654   3556


Q ss_pred             HHHHHHhhccCCCcEEEE
Q 041970          303 QLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       303 ~L~p~i~~~LkpGG~LIl  320 (327)
                      .++.++.+.|||||++++
T Consensus        78 ~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   78 AALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHcCcCeEEeC
Confidence            788999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.07  E-value=1.6e-05  Score=77.31  Aligned_cols=86  Identities=16%  Similarity=0.220  Sum_probs=56.4

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      ..|++||||||                   +|.++.++..++...+..+.. .++.+.  .++.         .+     
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~-~~i~~~--~~d~---------e~-----  183 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND-QRAHLL--PLGI---------EQ-----  183 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEE--eCCH---------HH-----
Confidence            36789999999                   888888876554433332222 345553  2332         11     


Q ss_pred             ccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          276 SSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                             +...++||+|+++-...   -...++..+.+.|+|||.++++.+.
T Consensus       184 -------lp~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~  228 (322)
T PRK15068        184 -------LPALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLV  228 (322)
T ss_pred             -------CCCcCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence                   11156899999974332   2456889999999999999998653

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.06  E-value=2.1e-05  Score=79.42  Aligned_cols=96  Identities=15%  Similarity=0.240  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970          202 TTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       202 TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~  260 (327)
                      ..+++..++.  .++|.+|||+||                     +|+++.+++.+++|+++.|+.  .+++.  .+|..
T Consensus       225 ~s~~~~~~l~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~--~v~~~--~~Da~  298 (431)
T PRK14903        225 SSQIVPLLME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS--SIEIK--IADAE  298 (431)
T ss_pred             HHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEE--ECchh
Confidence            3444444443  467899999999                     999999999999999999985  35553  34431


Q ss_pred             CCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHHHHHhhccCCC
Q 041970          261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLADHIVSYAKPG  315 (327)
Q Consensus       261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~p~i~~~LkpG  315 (327)
                               .+         ... ..++||.|++|..-                         ....+++..+.+.||||
T Consensus       299 ---------~l---------~~~-~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG  359 (431)
T PRK14903        299 ---------RL---------TEY-VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG  359 (431)
T ss_pred             ---------hh---------hhh-hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                     11         001 14679999998532                         12356788999999999


Q ss_pred             cEEEEee
Q 041970          316 AVVGISG  322 (327)
Q Consensus       316 G~LIlSG  322 (327)
                      |+++.|-
T Consensus       360 G~LvYsT  366 (431)
T PRK14903        360 GILLYST  366 (431)
T ss_pred             CEEEEEE
Confidence            9999885

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.05  E-value=2.5e-05  Score=71.32  Aligned_cols=100  Identities=21%  Similarity=0.296  Sum_probs=67.5

Q ss_pred             hhhHHHHHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          200 HATTKLCLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       200 H~TT~lcLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      |+-+-.-++++....  .++.+|||+||                  +|+++.+++.|++|+..++..   +++.  ..+.
T Consensus        30 ~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~---~~~~--~~~~  104 (233)
T PRK05134         30 HRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLK---IDYR--QTTA  104 (233)
T ss_pred             HHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCc---eEEE--ecCH
Confidence            555555556666553  34667888887                  899999999999999887753   3442  2232


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeec
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                               .+..         . ...++||+|+++-...   -...++..+.+.|+|||+++++.+
T Consensus       105 ---------~~~~---------~-~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        105 ---------EELA---------A-EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             ---------HHhh---------h-hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence                     1110         0 0246899999864322   234577889999999999998864

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.05  E-value=3.5e-05  Score=72.63  Aligned_cols=101  Identities=14%  Similarity=0.275  Sum_probs=73.7

Q ss_pred             HHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970          207 LLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN  265 (327)
Q Consensus       207 Le~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~  265 (327)
                      |..|-+.. +.++||++||                     +|+|+...+.|++|.+..|+. ++|++.  .|++.     
T Consensus        71 L~~l~~~~-~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-~~I~~~--~G~a~-----  141 (247)
T PLN02589         71 LNMLLKLI-NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-HKIDFR--EGPAL-----  141 (247)
T ss_pred             HHHHHHHh-CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEE--eccHH-----
Confidence            33444333 3568888888                     999999999999999999997 788875  46652     


Q ss_pred             ccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                          +.+..+.    ......++||+|+...-..-.....+.+.++|+|||.+++-.++
T Consensus       142 ----e~L~~l~----~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl  192 (247)
T PLN02589        142 ----PVLDQMI----EDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTL  192 (247)
T ss_pred             ----HHHHHHH----hccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence                2221100    00001368999999988888888888889999999999988775

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.02  E-value=2.9e-05  Score=77.99  Aligned_cols=115  Identities=18%  Similarity=0.194  Sum_probs=76.7

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcC
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNN  244 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNg  244 (327)
                      ..+.+.|+. |---..+.++..++.+.+++  .++++|||+||                  +|+++.|++.|++|++.|+
T Consensus       260 ~~~~~~~~~-F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~  338 (431)
T TIGR00479       260 LSFSLSARD-FFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNG  338 (431)
T ss_pred             EEEEECCCc-eeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhC
Confidence            467788875 44344555665666666554  45689999999                  9999999999999999999


Q ss_pred             CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-HHHHHHHHHhhccCCCcEEEEe
Q 041970          245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      +.  ++++.  .+|..         +.+..      ... ....||+|+.|+... ....++..+. .++|++.+++|
T Consensus       339 ~~--nv~~~--~~d~~---------~~l~~------~~~-~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs  395 (431)
T TIGR00479       339 IA--NVEFL--AGTLE---------TVLPK------QPW-AGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS  395 (431)
T ss_pred             CC--ceEEE--eCCHH---------HHHHH------HHh-cCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence            85  46664  45541         11100      001 134699999998742 2344444444 37899888776

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.02  E-value=1.5e-06  Score=68.82  Aligned_cols=71  Identities=24%  Similarity=0.373  Sum_probs=39.7

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLL  302 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~  302 (327)
                      +|+++.+++.|+++...++.. ....+.....+..                     .....++||+|+++-..+   .+.
T Consensus        26 ~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~---------------------~~~~~~~fD~V~~~~vl~~l~~~~   83 (99)
T PF08242_consen   26 VDISPSMLERARERLAELGND-NFERLRFDVLDLF---------------------DYDPPESFDLVVASNVLHHLEDIE   83 (99)
T ss_dssp             EESSSSTTSTTCCCHHHCT----EEEEE--SSS------------------------CCC----SEEEEE-TTS--S-HH
T ss_pred             EECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChh---------------------hcccccccceehhhhhHhhhhhHH
Confidence            999999999999888877643 1112211111110                     011135899999986544   345


Q ss_pred             HHHHHHhhccCCCcEE
Q 041970          303 QLADHIVSYAKPGAVV  318 (327)
Q Consensus       303 ~L~p~i~~~LkpGG~L  318 (327)
                      .++..+.++|||||+|
T Consensus        84 ~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   84 AVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             HHHHHHTTT-TSS-EE
T ss_pred             HHHHHHHHHcCCCCCC
Confidence            7788999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.01  E-value=7.7e-06  Score=74.76  Aligned_cols=106  Identities=21%  Similarity=0.379  Sum_probs=67.0

Q ss_pred             CceeEEEccC-cccCCCc-hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHH
Q 041970          183 QATNIILNPG-LAFGTGE-HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNA  240 (327)
Q Consensus       183 ~~~~I~idPG-~AFGTG~-H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa  240 (327)
                      ......+|+. .-|-+|. ++=.|     |.+.+++|++|+|+.|                    +|++|.|++..++|+
T Consensus        71 ~G~~f~~D~~kvyfs~rl~~Er~R-----i~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni  145 (200)
T PF02475_consen   71 NGIRFKVDLSKVYFSPRLSTERRR-----IANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENI  145 (200)
T ss_dssp             TTEEEEEETTTS---GGGHHHHHH-----HHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHH
T ss_pred             CCEEEEEccceEEEccccHHHHHH-----HHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHH
Confidence            4466778875 4467664 23332     3344778999999999                    999999999999999


Q ss_pred             HhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEE
Q 041970          241 ALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVV  318 (327)
Q Consensus       241 ~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~L  318 (327)
                      ++|++. +++.+.  .+|..         +            +.....||-|++|.+...+ .+++.+.+++++||.+
T Consensus       146 ~lNkv~-~~i~~~--~~D~~---------~------------~~~~~~~drvim~lp~~~~-~fl~~~~~~~~~~g~i  198 (200)
T PF02475_consen  146 RLNKVE-NRIEVI--NGDAR---------E------------FLPEGKFDRVIMNLPESSL-EFLDAALSLLKEGGII  198 (200)
T ss_dssp             HHTT-T-TTEEEE--ES-GG---------G---------------TT-EEEEEE--TSSGG-GGHHHHHHHEEEEEEE
T ss_pred             HHcCCC-CeEEEE--cCCHH---------H------------hcCccccCEEEECChHHHH-HHHHHHHHHhcCCcEE
Confidence            999998 677654  45541         1            2125789999999986655 4677788889998865

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.00  E-value=3.4e-05  Score=72.42  Aligned_cols=104  Identities=17%  Similarity=0.289  Sum_probs=71.6

Q ss_pred             cccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEE
Q 041970          193 LAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKL  252 (327)
Q Consensus       193 ~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v  252 (327)
                      |.||  .|-+=+--+..+... .+|.+||||||                    +|+++.+++.|++-+..-+.. + +++
T Consensus        31 ~S~g--~~~~Wr~~~i~~~~~-~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-~-i~f  105 (238)
T COG2226          31 MSFG--LHRLWRRALISLLGI-KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-N-VEF  105 (238)
T ss_pred             ccCc--chHHHHHHHHHhhCC-CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-c-eEE
Confidence            4454  565544433333221 27899999999                    999999999999998876665 2 665


Q ss_pred             EecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---HHHHHHHHHHhhccCCCcEEEEeec
Q 041970          253 HLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       253 ~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      .  .+|+.         ++          ++ ++..||+|.+.--.   .-+...+.++.++|||||++++--+
T Consensus       106 v--~~dAe---------~L----------Pf-~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~  157 (238)
T COG2226         106 V--VGDAE---------NL----------PF-PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEF  157 (238)
T ss_pred             E--Eechh---------hC----------CC-CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence            3  46652         11          23 47899999887532   2345678899999999998876443

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.00  E-value=1.1e-05  Score=68.30  Aligned_cols=39  Identities=23%  Similarity=0.334  Sum_probs=32.2

Q ss_pred             CCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEeecc
Q 041970          286 TEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       286 ~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .++||+|+||-..+.   ...++..+.++|||||+++++-..
T Consensus        76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            679999999965433   467889999999999999998654

...

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.00  E-value=1.6e-05  Score=75.21  Aligned_cols=36  Identities=19%  Similarity=0.441  Sum_probs=28.9

Q ss_pred             CCCeeEEEE-cCCh----HHHHHHHHHHhhccCCCcEEEEe
Q 041970          286 TEEYDVVIA-NILL----NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       286 ~~~fDlVvA-NIla----~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      .++||+|+| |.+.    ....+++..+.+.|+|||+|++.
T Consensus       201 ~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      201 LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            578999999 5432    34557899999999999999974

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.99  E-value=2.4e-05  Score=70.34  Aligned_cols=75  Identities=11%  Similarity=0.148  Sum_probs=53.8

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------  299 (327)
                      +|+++.+++.|++|++.+++.  ++++.  .+|+.         ++..        ...+.+.+|.|+.|..-.      
T Consensus        46 vD~~~~~l~~a~~~~~~~~l~--ni~~i--~~d~~---------~~~~--------~~~~~~~~d~v~~~~pdpw~k~~h  104 (194)
T TIGR00091        46 IEIHTPIVLAANNKANKLGLK--NLHVL--CGDAN---------ELLD--------KFFPDGSLSKVFLNFPDPWPKKRH  104 (194)
T ss_pred             EEeeHHHHHHHHHHHHHhCCC--CEEEE--ccCHH---------HHHH--------hhCCCCceeEEEEECCCcCCCCCc
Confidence            899999999999999999885  46653  45541         1110        111245799999996321      


Q ss_pred             -----HHHHHHHHHhhccCCCcEEEEe
Q 041970          300 -----PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       300 -----vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                           +...++..+.+.|||||.|+++
T Consensus       105 ~~~r~~~~~~l~~~~r~LkpgG~l~~~  131 (194)
T TIGR00091       105 NKRRITQPHFLKEYANVLKKGGVIHFK  131 (194)
T ss_pred             cccccCCHHHHHHHHHHhCCCCEEEEE
Confidence                 1246788999999999999875

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.98  E-value=1.7e-05  Score=63.30  Aligned_cols=66  Identities=20%  Similarity=0.355  Sum_probs=47.5

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC------hH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL------LN  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl------a~  299 (327)
                      +|+|+.+++.|+++.+..+..   +++.  ++|..         ++.          . ..++||+|+++-.      .+
T Consensus        30 vD~s~~~l~~~~~~~~~~~~~---~~~~--~~D~~---------~l~----------~-~~~~~D~v~~~~~~~~~~~~~   84 (101)
T PF13649_consen   30 VDISPEMLELAKKRFSEDGPK---VRFV--QADAR---------DLP----------F-SDGKFDLVVCSGLSLHHLSPE   84 (101)
T ss_dssp             EES-HHHHHHHHHHSHHTTTT---SEEE--ESCTT---------CHH----------H-HSSSEEEEEE-TTGGGGSSHH
T ss_pred             EECCHHHHHHHHHhchhcCCc---eEEE--ECCHh---------HCc----------c-cCCCeeEEEEcCCccCCCCHH
Confidence            899999999999999876663   4553  35542         111          0 2569999999422      35


Q ss_pred             HHHHHHHHHhhccCCCc
Q 041970          300 PLLQLADHIVSYAKPGA  316 (327)
Q Consensus       300 vL~~L~p~i~~~LkpGG  316 (327)
                      .+..++..+.++|+|||
T Consensus        85 ~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   85 ELEALLRRIARLLRPGG  101 (101)
T ss_dssp             HHHHHHHHHHHTEEEEE
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            67889999999999998

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.98  E-value=7.6e-05  Score=67.59  Aligned_cols=92  Identities=18%  Similarity=0.238  Sum_probs=61.8

Q ss_pred             hhHHHHHHHHHhh-hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          201 ATTKLCLLLLRSL-IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       201 ~TT~lcLe~Le~~-~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      ++...+++++..+ ..++.+|||+||                  +|+++.+++.|++++..++.. +++.+.  .+|.- 
T Consensus        47 ~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~i~~~--~~d~~-  122 (230)
T PRK07580         47 RMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLA-GNITFE--VGDLE-  122 (230)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc-cCcEEE--EcCch-
Confidence            3344566677653 346789999999                  999999999999999888775 456654  23320 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEE
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVV  318 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~L  318 (327)
                                          .  ..++||+|+++-..     ..+..++..+.+.+++++.+
T Consensus       123 --------------------~--~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i  162 (230)
T PRK07580        123 --------------------S--LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF  162 (230)
T ss_pred             --------------------h--ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence                                0  14679999987432     34456667777766544443

>TIGR00452 methyltransferase, putative

Probab=97.96  E-value=4.7e-05  Score=74.08  Aligned_cols=85  Identities=16%  Similarity=0.150  Sum_probs=54.1

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      .+|++|||+||                   +|.++.++..++...+.-+.. .++.+.  ..+.         .+     
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~-~~v~~~--~~~i---------e~-----  182 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND-KRAILE--PLGI---------EQ-----  182 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC-CCeEEE--ECCH---------HH-----
Confidence            46788999999                   888888887654432221111 234432  2222         11     


Q ss_pred             ccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeec
Q 041970          276 SSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                             +....+||+|++|-...   -....+..+++.|||||.|+++-+
T Consensus       183 -------lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       183 -------LHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             -------CCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence                   11235799999986432   234678899999999999998754

Known examples to date are restricted to the proteobacteria.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=97.95  E-value=5.7e-05  Score=67.50  Aligned_cols=72  Identities=15%  Similarity=0.266  Sum_probs=50.4

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---HHHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---NPLL  302 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---~vL~  302 (327)
                      +|+++.+++.+++|..   .. .++.+.  .+|..         +.          .. ..++||+|+++...   .-..
T Consensus        70 iD~~~~~~~~~~~~~~---~~-~~i~~~--~~d~~---------~~----------~~-~~~~~D~i~~~~~~~~~~~~~  123 (223)
T TIGR01934        70 VDFSSEMLEVAKKKSE---LP-LNIEFI--QADAE---------AL----------PF-EDNSFDAVTIAFGLRNVTDIQ  123 (223)
T ss_pred             EECCHHHHHHHHHHhc---cC-CCceEE--ecchh---------cC----------CC-CCCcEEEEEEeeeeCCcccHH
Confidence            8999999999999875   21 345543  34431         10          11 24689999987532   3355


Q ss_pred             HHHHHHhhccCCCcEEEEeec
Q 041970          303 QLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       303 ~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      .++..+.+.|+|||++++.++
T Consensus       124 ~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       124 KALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             HHHHHHHHHcCCCcEEEEEEe
Confidence            688899999999999998775

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.91  E-value=0.00013  Score=67.16  Aligned_cols=93  Identities=13%  Similarity=0.111  Sum_probs=59.1

Q ss_pred             HHHHhhh-cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCC-------------CCcEEEEec
Q 041970          208 LLLRSLI-KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIG-------------PKKMKLHLV  255 (327)
Q Consensus       208 e~Le~~~-~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~-------------~~~v~v~~~  255 (327)
                      ++++.+. .++.+|||+||                  ||+++.|++.|..   .|++.             ..++++.  
T Consensus        25 ~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~--   99 (213)
T TIGR03840        25 KHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIF--   99 (213)
T ss_pred             HHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEE--
Confidence            3444432 46779999999                  9999999998643   22321             1234443  


Q ss_pred             CCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC-----hHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          256 PDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl-----a~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .+|.+         ++          .....++||+|+....     .+.-...+..+.++|||||++++-++-
T Consensus       100 ~~D~~---------~~----------~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       100 CGDFF---------AL----------TAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             EccCC---------CC----------CcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            45553         10          0001357898887643     233456889999999999987777653

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK08317 hypothetical protein; Provisional

Probab=97.90  E-value=0.00012  Score=65.71  Aligned_cols=83  Identities=19%  Similarity=0.273  Sum_probs=58.0

Q ss_pred             cCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          215 KGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       215 ~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      .++++|||+||                     +|+++.+++.|++|....+   .++.+.  .+|..         ..  
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~---~~~~~~--~~d~~---------~~--   81 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG---PNVEFV--RGDAD---------GL--   81 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC---CceEEE--ecccc---------cC--
Confidence            56778999988                     8999999999999843322   234543  23431         00  


Q ss_pred             hcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEee
Q 041970          274 YLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSG  322 (327)
                              .+ ..++||+|+++-..+.   ...++..+.+.|+|||++++..
T Consensus        82 --------~~-~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         82 --------PF-PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             --------CC-CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence                    11 2468999999865432   3567889999999999998865

>PRK00811 spermidine synthase; Provisional

Probab=97.90  E-value=7e-05  Score=71.53  Aligned_cols=86  Identities=15%  Similarity=0.171  Sum_probs=60.1

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcC--C-CCCcEEEEecCCCCCCCCccccccch
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNN--I-GPKKMKLHLVPDRTFPSSMNERVDGI  271 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNg--v-~~~~v~v~~~~~d~~~~~~~g~~~~l  271 (327)
                      ..+++|||+||                    ||+|+.+++.|+++....+  . +..++++.  .+|..         +.
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~--~~Da~---------~~  143 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELV--IGDGI---------KF  143 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEE--ECchH---------HH
Confidence            34578999999                    9999999999999976422  2 33567765  35541         11


Q ss_pred             hhhcccccccCCCCCCCeeEEEEcCCh-----HHH--HHHHHHHhhccCCCcEEEEe
Q 041970          272 VEYLSSHKIRGISETEEYDVVIANILL-----NPL--LQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       272 ~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL--~~L~p~i~~~LkpGG~LIlS  321 (327)
                      +.        .  ..++||+|+++...     ..+  ..+...+.++|+|||.+++.
T Consensus       144 l~--------~--~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        144 VA--------E--TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             Hh--------h--CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            10        1  25689999998531     122  56678899999999999874

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.90  E-value=4e-05  Score=74.13  Aligned_cols=77  Identities=29%  Similarity=0.420  Sum_probs=45.7

Q ss_pred             HHHHHHHHhhhcC-------CCeeeeeee--------------------ecCCHHHHHHHHHHHHhc-CCCCCcEEEEec
Q 041970          204 KLCLLLLRSLIKG-------GELFLDYGT--------------------VDIDPQVIKSAHQNAALN-NIGPKKMKLHLV  255 (327)
Q Consensus       204 ~lcLe~Le~~~~~-------g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN-gv~~~~v~v~~~  255 (327)
                      ..-+.||++++..       .-++|||||                    +|||+.+++.|++|++.| ++. ++|++...
T Consensus        83 ~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~-~~I~l~~~  161 (299)
T PF05971_consen   83 LNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE-SRIELRKQ  161 (299)
T ss_dssp             HHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T-TTEEEEE-
T ss_pred             HHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc-cceEEEEc
Confidence            4556778777643       347999999                    999999999999999999 997 78988643


Q ss_pred             CCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh
Q 041970          256 PDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL  298 (327)
Q Consensus       256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla  298 (327)
                      ..+..  +.    ..+           +...+.||+.+||+..
T Consensus       162 ~~~~~--i~----~~i-----------~~~~e~~dftmCNPPF  187 (299)
T PF05971_consen  162 KNPDN--IF----DGI-----------IQPNERFDFTMCNPPF  187 (299)
T ss_dssp             -ST-S--ST----TTS-----------TT--S-EEEEEE----
T ss_pred             CCccc--cc----hhh-----------hcccceeeEEecCCcc
Confidence            22210  01    111           1125689999999874

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.90  E-value=2.2e-05  Score=73.76  Aligned_cols=35  Identities=20%  Similarity=0.449  Sum_probs=29.8

Q ss_pred             CCCeeEEEEcCCh---------HHHHHHHHHHhhccCCCcEEEE
Q 041970          286 TEEYDVVIANILL---------NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       286 ~~~fDlVvANIla---------~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      ...||+|+|=-+.         +=|..++..|.++|.|||+||+
T Consensus       164 ~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv  207 (288)
T KOG2899|consen  164 QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV  207 (288)
T ss_pred             cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence            5679999996442         5688999999999999999986

>PHA03412 putative methyltransferase; Provisional

Probab=97.88  E-value=6.4e-05  Score=70.58  Aligned_cols=120  Identities=11%  Similarity=0.127  Sum_probs=67.2

Q ss_pred             HhhcCceEEEcCcEEEEcCCCCCceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHH
Q 041970          161 AQESFHPVEVTKGLWIVPEWNVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNA  240 (327)
Q Consensus       161 Wk~~f~P~~vg~~l~I~P~W~~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa  240 (327)
                      +-+||.|..+-..+++   |... ....+|||.  |||     .+.+.+..++....  -..|=++|||+.|++.|++|.
T Consensus        30 ~GqFfTP~~iAr~~~i---~~~~-~grVLDlG~--GSG-----~Lalala~~~~~~~--~~~V~aVEID~~Al~~Ar~n~   96 (241)
T PHA03412         30 LGAFFTPIGLARDFTI---DACT-SGSVVDLCA--GIG-----GLSFAMVHMMMYAK--PREIVCVELNHTYYKLGKRIV   96 (241)
T ss_pred             CCccCCCHHHHHHHHH---hccC-CCEEEEccC--hHH-----HHHHHHHHhcccCC--CcEEEEEECCHHHHHHHHhhc
Confidence            3467888777654422   2211 235577774  444     23333333322111  123334999999999999985


Q ss_pred             HhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---------------HHHHHHH
Q 041970          241 ALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---------------NPLLQLA  305 (327)
Q Consensus       241 ~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---------------~vL~~L~  305 (327)
                      ..       +.+.  .+|..                     .....++||+||+|++.               .....++
T Consensus        97 ~~-------~~~~--~~D~~---------------------~~~~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li  146 (241)
T PHA03412         97 PE-------ATWI--NADAL---------------------TTEFDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVI  146 (241)
T ss_pred             cC-------CEEE--Ecchh---------------------cccccCCccEEEECCCCCCccccccCCcccccHHHHHHH
Confidence            31       3333  34542                     00114589999999863               2345577


Q ss_pred             HHHhhccCCCcEEEEeec
Q 041970          306 DHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       306 p~i~~~LkpGG~LIlSGI  323 (327)
                      ....+++++|+.++=+.|
T Consensus       147 ~~A~~Ll~~G~~ILP~~~  164 (241)
T PHA03412        147 ERASQIARQGTFIIPQMS  164 (241)
T ss_pred             HHHHHHcCCCEEEeCccc
Confidence            788887777776443443

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.86  E-value=8.2e-05  Score=67.98  Aligned_cols=77  Identities=19%  Similarity=0.303  Sum_probs=52.3

Q ss_pred             Ceeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccccc
Q 041970          218 ELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHK  279 (327)
Q Consensus       218 ~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~  279 (327)
                      .++||+||                  +|+++.||+.|++.++  +.+  +|++.  ..++.                   
T Consensus        45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~~~--~V~~~--~~dvp-------------------   99 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--GLP--HVEWI--QADVP-------------------   99 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T-S--SEEEE--ES-TT-------------------
T ss_pred             ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--CCC--CeEEE--ECcCC-------------------
Confidence            58999999                  9999999999999764  333  46664  34431                   


Q ss_pred             ccCCCCCCCeeEEEEcC----C--hHHHHHHHHHHhhccCCCcEEEEe
Q 041970          280 IRGISETEEYDVVIANI----L--LNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       280 ~~~~~~~~~fDlVvANI----l--a~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                        ...+.++||+||.-=    +  .+.+..++..+.+.|+|||.||+-
T Consensus       100 --~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g  145 (201)
T PF05401_consen  100 --EFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFG  145 (201)
T ss_dssp             --T---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             --CCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence              122478999998652    2  246778889999999999999873

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.83  E-value=0.0001  Score=66.52  Aligned_cols=95  Identities=22%  Similarity=0.253  Sum_probs=65.1

Q ss_pred             HHHHHHhhhc------CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          206 CLLLLRSLIK------GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       206 cLe~Le~~~~------~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      -++++.+.+.      .+.+|||+||                  +|+++.+++.+++|+..+++.  ++.+.  .++.. 
T Consensus        29 ~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~--~~d~~-  103 (224)
T TIGR01983        29 RLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL--KIEYR--CTSVE-  103 (224)
T ss_pred             HHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC--ceEEE--eCCHH-
Confidence            3355554443      3679999999                  999999999999999988763  24442  23321 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeec
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                              +..          ....++||+|+++-..+   ....++..+.+.|+|||.+++++.
T Consensus       104 --------~~~----------~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       104 --------DLA----------EKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             --------Hhh----------cCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence                    110          01136899999974322   235678889999999999998764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.82  E-value=0.00017  Score=70.32  Aligned_cols=96  Identities=19%  Similarity=0.189  Sum_probs=60.0

Q ss_pred             CchhhHHHHHHHHHhh-hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCC---CCcEEEEec
Q 041970          198 GEHATTKLCLLLLRSL-IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIG---PKKMKLHLV  255 (327)
Q Consensus       198 G~H~TT~lcLe~Le~~-~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~---~~~v~v~~~  255 (327)
                      |+..+.+..++++... ..+|.+|||+||                  +|+++.+++.|++|++..+..   ...+++.  
T Consensus       125 ~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~--  202 (315)
T PLN02585        125 GHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFE--  202 (315)
T ss_pred             ChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEE--
Confidence            4445556677777654 235789999999                  999999999999998765321   1234443  


Q ss_pred             CCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC-----hHHHHHHHHHHhhccCCCcEEE
Q 041970          256 PDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl-----a~vL~~L~p~i~~~LkpGG~LI  319 (327)
                      .+|.                     ..+  .++||+|+++-.     .+.+..++..+.+ +.+||.+|
T Consensus       203 ~~Dl---------------------~~l--~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI  247 (315)
T PLN02585        203 ANDL---------------------ESL--SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII  247 (315)
T ss_pred             Ecch---------------------hhc--CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence            2332                     011  468999998732     2233445555554 45655543

>PRK04266 fibrillarin; Provisional

Probab=97.80  E-value=0.00012  Score=68.01  Aligned_cols=85  Identities=16%  Similarity=0.195  Sum_probs=56.9

Q ss_pred             hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      +++|.+|||+||                    +|+++.+++.++++++..  .  ++.+.  .+|..    ..  ...  
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~--nv~~i--~~D~~----~~--~~~--  135 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--K--NIIPI--LADAR----KP--ERY--  135 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--C--CcEEE--ECCCC----Cc--chh--
Confidence            457889999999                    899999999998887653  1  23332  34431    00  000  


Q ss_pred             hcccccccCCCCCCCeeEEEEcCChH-HHHHHHHHHhhccCCCcEEEEe
Q 041970          274 YLSSHKIRGISETEEYDVVIANILLN-PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla~-vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                             ..+  .++||+|+.++... ....++..+.+.|||||+++++
T Consensus       136 -------~~l--~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        136 -------AHV--VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             -------hhc--cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence                   011  34699999886432 2334578899999999999984

>PRK01581 speE spermidine synthase; Validated

Probab=97.79  E-value=9.7e-05  Score=73.33  Aligned_cols=115  Identities=18%  Similarity=0.230  Sum_probs=68.7

Q ss_pred             eEEEccCcccCCCc-hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHH---
Q 041970          186 NIILNPGLAFGTGE-HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAA---  241 (327)
Q Consensus       186 ~I~idPG~AFGTG~-H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~---  241 (327)
                      .+.||--+=|-+.. +--+.++..-.-......++||++||                    ||||+.+++.|+++-.   
T Consensus       119 ~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~  198 (374)
T PRK01581        119 RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVS  198 (374)
T ss_pred             EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccch
Confidence            35555555454433 22233333322112234568888888                    9999999999997321   


Q ss_pred             hc--CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------HH--HHHHHHHhhc
Q 041970          242 LN--NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------PL--LQLADHIVSY  311 (327)
Q Consensus       242 lN--gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------vL--~~L~p~i~~~  311 (327)
                      .|  .....|++++  .+|+.         +.+.        .  ..++||+|++++.-.      .+  .++...+.++
T Consensus       199 ~~~~~~~DpRV~vv--i~Da~---------~fL~--------~--~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~  257 (374)
T PRK01581        199 LNKSAFFDNRVNVH--VCDAK---------EFLS--------S--PSSLYDVIIIDFPDPATELLSTLYTSELFARIATF  257 (374)
T ss_pred             hccccCCCCceEEE--ECcHH---------HHHH--------h--cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHh
Confidence            22  2334577775  35542         1111        1  146899999996421      11  4577889999


Q ss_pred             cCCCcEEEEe
Q 041970          312 AKPGAVVGIS  321 (327)
Q Consensus       312 LkpGG~LIlS  321 (327)
                      |+|||+++.-
T Consensus       258 LkPgGV~V~Q  267 (374)
T PRK01581        258 LTEDGAFVCQ  267 (374)
T ss_pred             cCCCcEEEEe
Confidence            9999998764

>PLN02366 spermidine synthase

Probab=97.79  E-value=0.00017  Score=69.98  Aligned_cols=116  Identities=16%  Similarity=0.201  Sum_probs=71.2

Q ss_pred             eeEEEccCcccCCCc-hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHh-
Q 041970          185 TNIILNPGLAFGTGE-HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAAL-  242 (327)
Q Consensus       185 ~~I~idPG~AFGTG~-H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~l-  242 (327)
                      ..+.||-.+-+.+.. +.-..+....-.......++||++||                    ||||+..++.|++.... 
T Consensus        59 ~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~  138 (308)
T PLN02366         59 KVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDL  138 (308)
T ss_pred             eEEEECCEeeecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhh
Confidence            356666555555444 11122222111111245689999999                    89999999999998753 


Q ss_pred             c-CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HH--HHHHHHHHhhccCC
Q 041970          243 N-NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NP--LLQLADHIVSYAKP  314 (327)
Q Consensus       243 N-gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~v--L~~L~p~i~~~Lkp  314 (327)
                      + +++..|+++.  .+|..         +.++        .. ..++||+|+.+...     ..  -.++...+.++|+|
T Consensus       139 ~~~~~dpRv~vi--~~Da~---------~~l~--------~~-~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~p  198 (308)
T PLN02366        139 AVGFDDPRVNLH--IGDGV---------EFLK--------NA-PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRP  198 (308)
T ss_pred             ccccCCCceEEE--EChHH---------HHHh--------hc-cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCC
Confidence            2 3444678875  35531         1111        11 14589999998642     11  23567889999999


Q ss_pred             CcEEEE
Q 041970          315 GAVVGI  320 (327)
Q Consensus       315 GG~LIl  320 (327)
                      ||.++.
T Consensus       199 gGvlv~  204 (308)
T PLN02366        199 GGVVCT  204 (308)
T ss_pred             CcEEEE
Confidence            999875

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.78  E-value=8.3e-05  Score=67.28  Aligned_cols=99  Identities=23%  Similarity=0.314  Sum_probs=74.8

Q ss_pred             hhHHHHHHHHHhhh---cC--CCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEe
Q 041970          201 ATTKLCLLLLRSLI---KG--GELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHL  254 (327)
Q Consensus       201 ~TT~lcLe~Le~~~---~~--g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~  254 (327)
                      +.|-+.|.+|++-.   +.  .+-++++||                     +||+|.|.+++++-|+.|++..   .+  
T Consensus        23 EDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~---~~--   97 (209)
T KOG3191|consen   23 EDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHI---DV--   97 (209)
T ss_pred             chhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCcc---ce--
Confidence            45778888887643   22  356999999                     9999999999999999999863   33  


Q ss_pred             cCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------------------HHHHHHHHHHhh
Q 041970          255 VPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------------------NPLLQLADHIVS  310 (327)
Q Consensus       255 ~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------------------~vL~~L~p~i~~  310 (327)
                      +..|+.        .            .+. .++.|+++-|+..                        .++.+|+|++..
T Consensus        98 V~tdl~--------~------------~l~-~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~  156 (209)
T KOG3191|consen   98 VRTDLL--------S------------GLR-NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPD  156 (209)
T ss_pred             eehhHH--------h------------hhc-cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhh
Confidence            234542        1            122 4789999999752                        467789999999


Q ss_pred             ccCCCcEEEEeeccC
Q 041970          311 YAKPGAVVGISGILS  325 (327)
Q Consensus       311 ~LkpGG~LIlSGIl~  325 (327)
                      .|.|.|.+++-++-.
T Consensus       157 iLSp~Gv~Ylv~~~~  171 (209)
T KOG3191|consen  157 ILSPRGVFYLVALRA  171 (209)
T ss_pred             hcCcCceEEeeehhh
Confidence            999999999987643

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.78  E-value=0.00025  Score=65.41  Aligned_cols=83  Identities=10%  Similarity=0.102  Sum_probs=53.0

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCC-------------CCcEEEEecCCCCCCCC
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIG-------------PKKMKLHLVPDRTFPSS  263 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~-------------~~~v~v~~~~~d~~~~~  263 (327)
                      .++.+|||+||                  ||+++.||+.+..   .|++.             ..++++.  .+|.+   
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~--~~D~~---  107 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIY--CGDFF---  107 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEE--ECccc---
Confidence            45679999999                  9999999998742   33332             1234443  35543   


Q ss_pred             ccccccchhhhcccccccCCCCCCCeeEEEEc-----CChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          264 MNERVDGIVEYLSSHKIRGISETEEYDVVIAN-----ILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       264 ~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvAN-----Ila~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                            ++          .....+.||+|+.=     +..+.-.+.+..+.++|+|||++++-
T Consensus       108 ------~l----------~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        108 ------AL----------TAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             ------CC----------CcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence                  00          00012578999843     33344467789999999999975543

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.78  E-value=6.4e-05  Score=75.00  Aligned_cols=107  Identities=20%  Similarity=0.304  Sum_probs=72.5

Q ss_pred             eEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCC
Q 041970          186 NIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNI  245 (327)
Q Consensus       186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv  245 (327)
                      .+...|-|.|.-   ..+.++++++... +++.+|||++|                    +|+++.|++.+++|+++|++
T Consensus        31 ~vFyqp~~~~nr---dl~~~v~~~~~~~-~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~  106 (382)
T PRK04338         31 PVFYNPRMELNR---DISVLVLRAFGPK-LPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL  106 (382)
T ss_pred             CeeeCccccchh---hHHHHHHHHHHhh-cCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            466777776652   3344455554311 13468999999                    99999999999999999998


Q ss_pred             CCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          246 GPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       246 ~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ..  +++.  .+|+         ..++           ....+||+|+.|+... -..+++.....+++||.+.+|
T Consensus       107 ~~--~~v~--~~Da---------~~~l-----------~~~~~fD~V~lDP~Gs-~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        107 EN--EKVF--NKDA---------NALL-----------HEERKFDVVDIDPFGS-PAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             Cc--eEEE--hhhH---------HHHH-----------hhcCCCCEEEECCCCC-cHHHHHHHHHHhcCCCEEEEE
Confidence            62  4443  3443         1111           0035799999999733 344556656678999999988

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.77  E-value=6.4e-05  Score=68.36  Aligned_cols=86  Identities=20%  Similarity=0.359  Sum_probs=57.9

Q ss_pred             HHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcccc
Q 041970          207 LLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNER  267 (327)
Q Consensus       207 Le~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~  267 (327)
                      ++.+.+.+.+|.+|||+||                   +|||+..|..+.+    +|++     |  .++|+-       
T Consensus         4 ~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rGv~-----V--iq~Dld-------   65 (193)
T PF07021_consen    4 LQIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RGVS-----V--IQGDLD-------   65 (193)
T ss_pred             HHHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cCCC-----E--EECCHH-------
Confidence            4567778889999999999                   9999999888654    5664     2  246651       


Q ss_pred             ccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          268 VDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       268 ~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                       +++         ..+ ++..||.||.+-..+.+..--.-+.+.|+-|...|+|
T Consensus        66 -~gL---------~~f-~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVs  108 (193)
T PF07021_consen   66 -EGL---------ADF-PDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVS  108 (193)
T ss_pred             -HhH---------hhC-CCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEE
Confidence             111         123 4789999997765555444333455556667676665

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=97.76  E-value=0.00013  Score=63.99  Aligned_cols=80  Identities=16%  Similarity=0.248  Sum_probs=52.4

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .++++|||+||                  +|+|+.+++.+++|++.+    .++++.  .+|..         ++     
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~----~~v~ii--~~D~~---------~~-----   71 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA----DNLTVI--HGDAL---------KF-----   71 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC----CCEEEE--ECchh---------cC-----
Confidence            45678888888                  999999999999998542    346654  45652         11     


Q ss_pred             cccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhc--cCCCcEEEE
Q 041970          277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSY--AKPGAVVGI  320 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~--LkpGG~LIl  320 (327)
                           .. ...+||.|++|++.++-..++..+.+.  +.++|.+++
T Consensus        72 -----~~-~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~  111 (169)
T smart00650       72 -----DL-PKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMV  111 (169)
T ss_pred             -----Cc-cccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEE
Confidence                 11 134699999999876544444444432  346776654

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=7.2e-05  Score=67.92  Aligned_cols=57  Identities=28%  Similarity=0.392  Sum_probs=43.9

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      -.|++|+|+||                   ||+||.|++.+++|+..++   .++++.  ..|.                
T Consensus        44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~--~~dv----------------  102 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---GDVEFV--VADV----------------  102 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEE--Ecch----------------
Confidence            35778999999                   9999999999999999844   346654  2443                


Q ss_pred             ccccccCCCCCCCeeEEEEcCChH
Q 041970          276 SSHKIRGISETEEYDVVIANILLN  299 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~  299 (327)
                           ..+  .+++|.|+.|+..+
T Consensus       103 -----~~~--~~~~dtvimNPPFG  119 (198)
T COG2263         103 -----SDF--RGKFDTVIMNPPFG  119 (198)
T ss_pred             -----hhc--CCccceEEECCCCc
Confidence                 122  67899999999753

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.73  E-value=0.00025  Score=53.46  Aligned_cols=75  Identities=23%  Similarity=0.330  Sum_probs=51.6

Q ss_pred             eeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh----H
Q 041970          224 GTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL----N  299 (327)
Q Consensus       224 GcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla----~  299 (327)
                      -++|+++.++..++++.+.++.  .++++.  .+|..         +.         .. ...++||+|++|...    .
T Consensus        25 ~~~d~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~---------~~---------~~-~~~~~~d~i~~~~~~~~~~~   81 (107)
T cd02440          25 TGVDISPVALELARKAAAALLA--DNVEVL--KGDAE---------EL---------PP-EADESFDVIISDPPLHHLVE   81 (107)
T ss_pred             EEEeCCHHHHHHHHHHHhcccc--cceEEE--EcChh---------hh---------cc-ccCCceEEEEEccceeehhh
Confidence            3389999999999976555543  345553  34431         10         00 124689999999764    3


Q ss_pred             HHHHHHHHHhhccCCCcEEEEe
Q 041970          300 PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       300 vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ....++..+.+.++|||+++++
T Consensus        82 ~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          82 DLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEE
Confidence            4677888899999999999886

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PHA03411 putative methyltransferase; Provisional

Probab=97.73  E-value=9.4e-05  Score=70.86  Aligned_cols=65  Identities=20%  Similarity=0.333  Sum_probs=44.2

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-----
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-----  300 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-----  300 (327)
                      +|+++.+++.|++|.  +     ++++.  .+|..         +            ....++||+|++|+....     
T Consensus        94 VDisp~al~~Ar~n~--~-----~v~~v--~~D~~---------e------------~~~~~kFDlIIsNPPF~~l~~~d  143 (279)
T PHA03411         94 VELNPEFARIGKRLL--P-----EAEWI--TSDVF---------E------------FESNEKFDVVISNPPFGKINTTD  143 (279)
T ss_pred             EECCHHHHHHHHHhC--c-----CCEEE--ECchh---------h------------hcccCCCcEEEEcCCccccCchh
Confidence            899999999999984  2     23332  35542         1            111458999999986321     


Q ss_pred             ------------------HHHHHHHHhhccCCCcEEEE
Q 041970          301 ------------------LLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       301 ------------------L~~L~p~i~~~LkpGG~LIl  320 (327)
                                        +.+++.....+|+|+|.+++
T Consensus       144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~  181 (279)
T PHA03411        144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF  181 (279)
T ss_pred             hhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence                              35667777889999997654

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=97.69  E-value=0.00023  Score=64.90  Aligned_cols=80  Identities=15%  Similarity=0.227  Sum_probs=54.8

Q ss_pred             hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      +.++.+|||+||                    +|+++.|++.|++|..  +     +.+.  .+++.             
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--~-----~~~~--~~d~~-------------   98 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--N-----INII--QGSLF-------------   98 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--C-----CcEE--Eeecc-------------
Confidence            356789999999                    9999999999998742  1     2222  24431             


Q ss_pred             hcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEeeccC
Q 041970          274 YLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                             ... ..++||+|++|-...     .+..++..+.+.+  +++++++++..
T Consensus        99 -------~~~-~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~  145 (204)
T TIGR03587        99 -------DPF-KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN  145 (204)
T ss_pred             -------CCC-CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence                   011 256899999986432     3566777777776  56888887643

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00417 speE spermidine synthase

Probab=97.69  E-value=0.00013  Score=68.95  Aligned_cols=75  Identities=16%  Similarity=0.248  Sum_probs=50.2

Q ss_pred             ecCCHHHHHHHHHHHHhc-C-CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--H--
Q 041970          226 VDIDPQVIKSAHQNAALN-N-IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--N--  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lN-g-v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~--  299 (327)
                      +|+|+.+++.|+++.... + +...++++..  +|..         +.+.        .  ..++||+|+++...  .  
T Consensus       102 veid~~vi~~a~~~~~~~~~~~~~~~v~i~~--~D~~---------~~l~--------~--~~~~yDvIi~D~~~~~~~~  160 (270)
T TIGR00417       102 VDIDEKVIELSKKFLPSLAGSYDDPRVDLQI--DDGF---------KFLA--------D--TENTFDVIIVDSTDPVGPA  160 (270)
T ss_pred             EeCCHHHHHHHHHHhHhhcccccCCceEEEE--CchH---------HHHH--------h--CCCCccEEEEeCCCCCCcc
Confidence            899999999999987543 2 2334566542  4431         1110        1  14689999998641  1  


Q ss_pred             -H--HHHHHHHHhhccCCCcEEEEe
Q 041970          300 -P--LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       300 -v--L~~L~p~i~~~LkpGG~LIlS  321 (327)
                       .  ..+....+.++|+|||.+++.
T Consensus       161 ~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       161 ETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             cchhHHHHHHHHHHHhCCCcEEEEc
Confidence             1  245677899999999999875

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK06202 hypothetical protein; Provisional

Probab=97.67  E-value=0.00011  Score=67.51  Aligned_cols=61  Identities=23%  Similarity=0.373  Sum_probs=40.5

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh----H-H
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL----N-P  300 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla----~-v  300 (327)
                      +|+++.+++.|+++...+++.   +.+.  ..+.+                     .. .+++||+|++|...    + .
T Consensus        94 vD~s~~~l~~a~~~~~~~~~~---~~~~--~~~~l---------------------~~-~~~~fD~V~~~~~lhh~~d~~  146 (232)
T PRK06202         94 IDPDPRAVAFARANPRRPGVT---FRQA--VSDEL---------------------VA-EGERFDVVTSNHFLHHLDDAE  146 (232)
T ss_pred             EcCCHHHHHHHHhccccCCCe---EEEE--ecccc---------------------cc-cCCCccEEEECCeeecCChHH
Confidence            899999999999987666543   2221  11211                     01 25689999999643    2 2


Q ss_pred             HHHHHHHHhhccC
Q 041970          301 LLQLADHIVSYAK  313 (327)
Q Consensus       301 L~~L~p~i~~~Lk  313 (327)
                      +..++..+.+.++
T Consensus       147 ~~~~l~~~~r~~~  159 (232)
T PRK06202        147 VVRLLADSAALAR  159 (232)
T ss_pred             HHHHHHHHHHhcC
Confidence            4567888888887

>PRK03612 spermidine synthase; Provisional

Probab=97.67  E-value=0.00023  Score=73.57  Aligned_cols=115  Identities=17%  Similarity=0.273  Sum_probs=70.7

Q ss_pred             eeEEEccCcccCCCc-hhhHHHHHH-HHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHh
Q 041970          185 TNIILNPGLAFGTGE-HATTKLCLL-LLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAAL  242 (327)
Q Consensus       185 ~~I~idPG~AFGTG~-H~TT~lcLe-~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~l  242 (327)
                      ..+.+|-.+-|.+.. +.-..+... .+. ..+++++|||+||                    +||||.+++.|++|...
T Consensus       265 ~~L~ldG~~q~s~~de~~y~e~l~~~~l~-~~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l  343 (521)
T PRK03612        265 LRLYLNGRLQFSSRDEYRYHEALVHPAMA-ASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPAL  343 (521)
T ss_pred             eEEEECCEeeccCccHHHHHHHHHHHHHh-hCCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcc
Confidence            456677655555433 111122111 111 1245689999999                    99999999999997543


Q ss_pred             c-----CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH--------HHHHHHHHh
Q 041970          243 N-----NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP--------LLQLADHIV  309 (327)
Q Consensus       243 N-----gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v--------L~~L~p~i~  309 (327)
                      +     ..+..++++.  .+|..         +.+.        .  ..++||+|++|.....        -.++...+.
T Consensus       344 ~~~~~~~~~dprv~vi--~~Da~---------~~l~--------~--~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~  402 (521)
T PRK03612        344 RALNGGALDDPRVTVV--NDDAF---------NWLR--------K--LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLK  402 (521)
T ss_pred             hhhhccccCCCceEEE--EChHH---------HHHH--------h--CCCCCCEEEEeCCCCCCcchhccchHHHHHHHH
Confidence            3     2333467764  35541         1111        1  1468999999964211        134678899


Q ss_pred             hccCCCcEEEEe
Q 041970          310 SYAKPGAVVGIS  321 (327)
Q Consensus       310 ~~LkpGG~LIlS  321 (327)
                      ++|||||.+++.
T Consensus       403 ~~L~pgG~lv~~  414 (521)
T PRK03612        403 RRLAPDGLLVVQ  414 (521)
T ss_pred             HhcCCCeEEEEe
Confidence            999999999874

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.66  E-value=0.00016  Score=73.33  Aligned_cols=82  Identities=24%  Similarity=0.325  Sum_probs=56.5

Q ss_pred             CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccc
Q 041970          216 GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSS  277 (327)
Q Consensus       216 ~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~  277 (327)
                      ++++|||+||                  +|+++.+++.+++   .|+.. .++.+.  .+|..    .   ..       
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~~-~~i~~~--~~d~~----~---~~-------   96 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGHY-KNVKFM--CADVT----S---PD-------   96 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---HhccC-CceEEE--Eeccc----c---cc-------
Confidence            5679999999                  9999999987654   33322 345553  24431    0   00       


Q ss_pred             ccccCCCCCCCeeEEEEcCChHH-----HHHHHHHHhhccCCCcEEEEe
Q 041970          278 HKIRGISETEEYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       278 ~~~~~~~~~~~fDlVvANIla~v-----L~~L~p~i~~~LkpGG~LIlS  321 (327)
                         ... +.++||+|++|.....     +..++..+.+.|||||++++.
T Consensus        97 ---~~~-~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336         97 ---LNI-SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             ---cCC-CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence               011 2568999999975443     567889999999999999875

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.61  E-value=0.00028  Score=70.67  Aligned_cols=74  Identities=9%  Similarity=0.177  Sum_probs=54.8

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------  299 (327)
                      +|+++.+++.|.++++.+++.  .+.+.  .+|+.         .+.        ..+ +.+.+|.|+.|..-.      
T Consensus       152 IEI~~~~i~~a~~ka~~~gL~--NV~~i--~~DA~---------~ll--------~~~-~~~s~D~I~lnFPdPW~KkrH  209 (390)
T PRK14121        152 IEIHTPSIEQVLKQIELLNLK--NLLII--NYDAR---------LLL--------ELL-PSNSVEKIFVHFPVPWDKKPH  209 (390)
T ss_pred             EECCHHHHHHHHHHHHHcCCC--cEEEE--ECCHH---------Hhh--------hhC-CCCceeEEEEeCCCCccccch
Confidence            999999999999999999986  36653  45541         111        012 367899999996421      


Q ss_pred             ---HHHHHHHHHhhccCCCcEEEEe
Q 041970          300 ---PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       300 ---vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                         +...++..+.++|+|||.+.+.
T Consensus       210 RRlv~~~fL~e~~RvLkpGG~l~l~  234 (390)
T PRK14121        210 RRVISEDFLNEALRVLKPGGTLELR  234 (390)
T ss_pred             hhccHHHHHHHHHHHcCCCcEEEEE
Confidence               2356889999999999998874

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.00031  Score=66.33  Aligned_cols=69  Identities=25%  Similarity=0.378  Sum_probs=54.0

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA  305 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~  305 (327)
                      +|+++.-.+.|++|++.-++. +++++.  .+|..         +           .. ....||.|+..+....  +.+
T Consensus       125 yE~r~d~~k~A~~Nl~~~~l~-d~v~~~--~~Dv~---------~-----------~~-~~~~vDav~LDmp~PW--~~l  178 (256)
T COG2519         125 YEIREDFAKTARENLSEFGLG-DRVTLK--LGDVR---------E-----------GI-DEEDVDAVFLDLPDPW--NVL  178 (256)
T ss_pred             EEecHHHHHHHHHHHHHhccc-cceEEE--ecccc---------c-----------cc-cccccCEEEEcCCChH--HHH
Confidence            899999999999999999887 567664  46653         0           11 1348999999987543  567


Q ss_pred             HHHhhccCCCcEEEE
Q 041970          306 DHIVSYAKPGAVVGI  320 (327)
Q Consensus       306 p~i~~~LkpGG~LIl  320 (327)
                      +.+.+.|+|||.+++
T Consensus       179 e~~~~~Lkpgg~~~~  193 (256)
T COG2519         179 EHVSDALKPGGVVVV  193 (256)
T ss_pred             HHHHHHhCCCcEEEE
Confidence            899999999998764

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.57  E-value=0.00025  Score=69.58  Aligned_cols=91  Identities=19%  Similarity=0.288  Sum_probs=55.0

Q ss_pred             CCCeeeeeee-------------------ecCCHHHHHHHHHHHHh-cCC-CC--C--cEEEEecCCCCCCCCccccccc
Q 041970          216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAAL-NNI-GP--K--KMKLHLVPDRTFPSSMNERVDG  270 (327)
Q Consensus       216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~l-Ngv-~~--~--~v~v~~~~~d~~~~~~~g~~~~  270 (327)
                      ++.+|||+||                   +||+..+|+.|++-.+. +.- ..  .  .+......+|.+.       ..
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~-------~~  134 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS-------ES  134 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC-------SH
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc-------ch
Confidence            7889999999                   99999999999987621 110 00  0  0122222455531       11


Q ss_pred             hhhhcccccccCCCC-CCCeeEEEEcCCh-------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          271 IVEYLSSHKIRGISE-TEEYDVVIANILL-------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       271 l~~~~~~~~~~~~~~-~~~fDlVvANIla-------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      +.        ..+.. ..+||+|-|-.-.       .-...++..+..+|+|||+||..
T Consensus       135 l~--------~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT  185 (331)
T PF03291_consen  135 LR--------EKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT  185 (331)
T ss_dssp             HH--------CTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             hh--------hhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            11        01111 3599999998643       45677999999999999999864

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=97.57  E-value=0.00027  Score=64.16  Aligned_cols=93  Identities=20%  Similarity=0.330  Sum_probs=63.6

Q ss_pred             HHHHHHHhhhc------CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCC
Q 041970          205 LCLLLLRSLIK------GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDR  258 (327)
Q Consensus       205 lcLe~Le~~~~------~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d  258 (327)
                      -...||.+...      .-.+|||+||                    ||.++.||+.|+.-|++++++ +.|++.  +.|
T Consensus        50 riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~-n~I~f~--q~D  126 (227)
T KOG1271|consen   50 RIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS-NEIRFQ--QLD  126 (227)
T ss_pred             HHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC-cceeEE--Eee
Confidence            44567766543      2239999999                    999999999999999999998 557764  345


Q ss_pred             CCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----------HHHHHHHHHhhccCCCcEEEE
Q 041970          259 TFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----------PLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       259 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----------vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      +.    .+               .. ..++||+|+---..+           -+...+..+.+.|+|||+|++
T Consensus       127 I~----~~---------------~~-~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvI  179 (227)
T KOG1271|consen  127 IT----DP---------------DF-LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVI  179 (227)
T ss_pred             cc----CC---------------cc-cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEE
Confidence            42    00               11 257888887443211           113346678899999998875

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.54  E-value=0.00061  Score=60.84  Aligned_cols=74  Identities=18%  Similarity=0.214  Sum_probs=51.9

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------  298 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------  298 (327)
                      +|||+.+|+.|++|++..|+. +.+.+.  ..|..         ++         .  ...+.+|+||+|+..       
T Consensus        67 ~Di~~~~v~~a~~N~~~ag~~-~~i~~~--~~D~~---------~l---------~--~~~~~~d~IvtnPPyG~r~~~~  123 (179)
T PF01170_consen   67 SDIDPKAVRGARENLKAAGVE-DYIDFI--QWDAR---------EL---------P--LPDGSVDAIVTNPPYGRRLGSK  123 (179)
T ss_dssp             EESSHHHHHHHHHHHHHTT-C-GGEEEE--E--GG---------GG---------G--GTTSBSCEEEEE--STTSHCHH
T ss_pred             cCCCHHHHHHHHHHHHhcccC-CceEEE--ecchh---------hc---------c--cccCCCCEEEECcchhhhccCH
Confidence            799999999999999999987 566664  34431         11         1  125689999999863       


Q ss_pred             ----HHHHHHHHHHhhccCCCcEEEEee
Q 041970          299 ----NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       299 ----~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                          ..+..+...+.+.+++...+++++
T Consensus       124 ~~~~~ly~~~~~~~~~~l~~~~v~l~~~  151 (179)
T PF01170_consen  124 KDLEKLYRQFLRELKRVLKPRAVFLTTS  151 (179)
T ss_dssp             HHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence                345567888899999977777765

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.53  E-value=0.00029  Score=69.39  Aligned_cols=112  Identities=16%  Similarity=0.223  Sum_probs=79.1

Q ss_pred             eeEEEcc-CcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcC
Q 041970          185 TNIILNP-GLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNN  244 (327)
Q Consensus       185 ~~I~idP-G~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNg  244 (327)
                      ..+.+|+ ..-|..|.+---.-.+++    ...|.+|+|+=+                   +||+|.|++..+||+++|+
T Consensus       160 ~~f~vD~~Kv~Fsprl~~ER~Rva~~----v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~  235 (341)
T COG2520         160 CRFKVDVAKVYFSPRLSTERARVAEL----VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNK  235 (341)
T ss_pred             EEEEEchHHeEECCCchHHHHHHHhh----hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcC
Confidence            4567777 355777776444433333    457999999988                   9999999999999999999


Q ss_pred             CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      +. +++...  .||.-         ++.           ...+.||-|++|.+..-. ..++.....+++||.+-.=.+.
T Consensus       236 v~-~~v~~i--~gD~r---------ev~-----------~~~~~aDrIim~~p~~a~-~fl~~A~~~~k~~g~iHyy~~~  291 (341)
T COG2520         236 VE-GRVEPI--LGDAR---------EVA-----------PELGVADRIIMGLPKSAH-EFLPLALELLKDGGIIHYYEFV  291 (341)
T ss_pred             cc-ceeeEE--eccHH---------Hhh-----------hccccCCEEEeCCCCcch-hhHHHHHHHhhcCcEEEEEecc
Confidence            98 556543  46641         111           112679999999885432 3567778888999987665444

>PRK05785 hypothetical protein; Provisional

Probab=97.50  E-value=0.00024  Score=65.58  Aligned_cols=91  Identities=11%  Similarity=0.155  Sum_probs=59.6

Q ss_pred             cccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970          193 LAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLH  253 (327)
Q Consensus       193 ~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~  253 (327)
                      +.||.. +.-.+.+++.+..+..++.+|||+||                   +|+++.+++.|+++.       ..+   
T Consensus        29 ~s~g~~-~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~---   97 (226)
T PRK05785         29 ISFNQD-VRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKV---   97 (226)
T ss_pred             ccCCCc-HHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceE---
Confidence            345432 22344566666665556789999999                   999999999998641       111   


Q ss_pred             ecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCc
Q 041970          254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGA  316 (327)
Q Consensus       254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG  316 (327)
                        .++..         .+          ++ ++++||+|+++...+   .+...+.++.+.|||.+
T Consensus        98 --~~d~~---------~l----------p~-~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785         98 --VGSFE---------AL----------PF-RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             --Eechh---------hC----------CC-CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence              13321         10          12 267899999987432   34678889999999953

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.48  E-value=0.00078  Score=66.60  Aligned_cols=120  Identities=13%  Similarity=0.085  Sum_probs=74.4

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHHHhhhcC-CCeeeeeee------------------ecCCHHHHHHHHHHHHhcCC
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIKG-GELFLDYGT------------------VDIDPQVIKSAHQNAALNNI  245 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~-g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv  245 (327)
                      ..+.+.|+- |---.+.-+...++++.+++.. +.+|||++|                  ||+++.|++.|++|++.|++
T Consensus       175 ~~~~~~~~s-F~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~  253 (362)
T PRK05031        175 FIYRQVENS-FTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI  253 (362)
T ss_pred             EEEEeCCCC-eeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence            356677765 5445666777777777776653 358999999                  99999999999999999998


Q ss_pred             CCCcEEEEecCCCCCCCCccccccchhhhcccccc----cCCC-CCCCeeEEEEcCChH-HHHHHHHHHhhccCCCcEEE
Q 041970          246 GPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI----RGIS-ETEEYDVVIANILLN-PLLQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       246 ~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~----~~~~-~~~~fDlVvANIla~-vL~~L~p~i~~~LkpGG~LI  319 (327)
                      +  ++++.  .+|+.         +.+........    .... ...+||+|+.++... ....++..+.+   |++.++
T Consensus       254 ~--~v~~~--~~d~~---------~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivy  317 (362)
T PRK05031        254 D--NVQII--RMSAE---------EFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILY  317 (362)
T ss_pred             C--cEEEE--ECCHH---------HHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEE
Confidence            5  46664  45542         11110000000    0000 012599999998742 22333344433   677777


Q ss_pred             Ee
Q 041970          320 IS  321 (327)
Q Consensus       320 lS  321 (327)
                      +|
T Consensus       318 vS  319 (362)
T PRK05031        318 IS  319 (362)
T ss_pred             EE
Confidence            76

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.45  E-value=0.00017  Score=66.93  Aligned_cols=88  Identities=24%  Similarity=0.341  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhh-hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSL-IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~-~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      ||=..+++.+. +..-.+|.|+||                    +|-|+.+++.|++-.     .  .+++.  .+|+  
T Consensus        16 tRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p--~~~f~--~aDl--   84 (257)
T COG4106          16 TRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----P--DATFE--EADL--   84 (257)
T ss_pred             cCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----C--CCcee--cccH--
Confidence            44455566554 234568999999                    999999999986542     1  13332  3443  


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHH---HHHHHHHhhccCCCcEEEE
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL---LQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL---~~L~p~i~~~LkpGG~LIl  320 (327)
                                         +.+.+..++|+++||-..+-+   ..+++.+...|.|||.|.+
T Consensus        85 -------------------~~w~p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAV  127 (257)
T COG4106          85 -------------------RTWKPEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAV  127 (257)
T ss_pred             -------------------hhcCCCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEE
Confidence                               234456789999999876544   5689999999999999864

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.44  E-value=0.00037  Score=63.67  Aligned_cols=36  Identities=14%  Similarity=0.182  Sum_probs=28.2

Q ss_pred             CCCeeEEEEcCCh--------H------HHHHHHHHHhhccCCCcEEEEe
Q 041970          286 TEEYDVVIANILL--------N------PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       286 ~~~fDlVvANIla--------~------vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      .++||+|++|+..        +      .+..++..+.++|+|||.|++.
T Consensus       115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            5689999999732        1      1345778899999999999985

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.44  E-value=0.00038  Score=65.71  Aligned_cols=85  Identities=16%  Similarity=0.243  Sum_probs=57.9

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      +++|++||+.|+                     +|+.+.-.+.|++|++.+|+. +.+++.  ..|.+   .+|..+   
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~-~~v~~~--~~Dv~---~~g~~~---  108 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD-DNVTVH--HRDVC---EEGFDE---  108 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-TTEEEE--ES-GG---CG--ST---
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-CCceeE--eccee---cccccc---
Confidence            578888888888                     999999999999999999997 678775  45653   111100   


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhcc-CCCcEEEE
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYA-KPGAVVGI  320 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~L-kpGG~LIl  320 (327)
                               .+  ...+|.|+-.+...-  ..+|.+.+.| ++||++.+
T Consensus       109 ---------~~--~~~~DavfLDlp~Pw--~~i~~~~~~L~~~gG~i~~  144 (247)
T PF08704_consen  109 ---------EL--ESDFDAVFLDLPDPW--EAIPHAKRALKKPGGRICC  144 (247)
T ss_dssp             ---------T---TTSEEEEEEESSSGG--GGHHHHHHHE-EEEEEEEE
T ss_pred             ---------cc--cCcccEEEEeCCCHH--HHHHHHHHHHhcCCceEEE
Confidence                     11  467999999987543  2467788889 89998753

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.43  E-value=0.0014  Score=64.52  Aligned_cols=120  Identities=12%  Similarity=0.041  Sum_probs=71.6

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHHHhhhc-CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCC
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIK-GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNI  245 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~-~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv  245 (327)
                      ..+.+.|+..| --....+...++++.+++. .+++|||+||                  ||+++.|++.|++|++.|++
T Consensus       166 ~~~~~~~~~F~-Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~  244 (353)
T TIGR02143       166 FIYRQVENSFT-QPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI  244 (353)
T ss_pred             EEEEECCCCcc-cCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            45777787644 3334455555666666654 2457999999                  99999999999999999998


Q ss_pred             CCCcEEEEecCCCCCCCCccccccchhhhcccc-cc---cCCC-CCCCeeEEEEcCChH-HHHHHHHHHhhccCCCcEEE
Q 041970          246 GPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSH-KI---RGIS-ETEEYDVVIANILLN-PLLQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       246 ~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~-~~---~~~~-~~~~fDlVvANIla~-vL~~L~p~i~~~LkpGG~LI  319 (327)
                      +  ++++.  .+|..         +........ ..   .... ...+||+|+.++... ....++..+.+   |++.++
T Consensus       245 ~--~v~~~--~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivY  308 (353)
T TIGR02143       245 D--NVQII--RMSAE---------EFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILY  308 (353)
T ss_pred             C--cEEEE--EcCHH---------HHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEE
Confidence            5  36654  45541         111100000 00   0000 012489999998742 23334444433   678888


Q ss_pred             Ee
Q 041970          320 IS  321 (327)
Q Consensus       320 lS  321 (327)
                      +|
T Consensus       309 vs  310 (353)
T TIGR02143       309 IS  310 (353)
T ss_pred             EE
Confidence            76

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR03438 probable methyltransferase

Probab=97.43  E-value=0.00075  Score=64.91  Aligned_cols=78  Identities=12%  Similarity=0.045  Sum_probs=45.2

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEE-----cCChHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIA-----NILLNP  300 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvA-----NIla~v  300 (327)
                      +|+++.+++.|+++++...-. .++..  ..+|...    +  ..+.        ... ......+++.     |...+-
T Consensus        94 iDiS~~mL~~a~~~l~~~~p~-~~v~~--i~gD~~~----~--~~~~--------~~~-~~~~~~~~~~gs~~~~~~~~e  155 (301)
T TIGR03438        94 IDISADALKESAAALAADYPQ-LEVHG--ICADFTQ----P--LALP--------PEP-AAGRRLGFFPGSTIGNFTPEE  155 (301)
T ss_pred             EECCHHHHHHHHHHHHhhCCC-ceEEE--EEEcccc----h--hhhh--------ccc-ccCCeEEEEecccccCCCHHH
Confidence            999999999999998764311 22332  3455420    0  0000        000 0112233332     223445


Q ss_pred             HHHHHHHHhhccCCCcEEEEe
Q 041970          301 LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       301 L~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ...++..+.+.|+|||.|++.
T Consensus       156 ~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       156 AVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             HHHHHHHHHHhcCCCCEEEEe
Confidence            678899999999999999864

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.37  E-value=0.00047  Score=62.07  Aligned_cols=107  Identities=16%  Similarity=0.217  Sum_probs=69.6

Q ss_pred             CCCchhhHHHHHHHHHhhhc----CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEE
Q 041970          196 GTGEHATTKLCLLLLRSLIK----GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKL  252 (327)
Q Consensus       196 GTG~H~TT~lcLe~Le~~~~----~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v  252 (327)
                      |.++-|||...-|.|=..+.    .|.+|||+-|                   ||.|+.|++..++|++.-++. +++.+
T Consensus        18 ~~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~-~~~~v   96 (183)
T PF03602_consen   18 GDNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE-DKIRV   96 (183)
T ss_dssp             --TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G-GGEEE
T ss_pred             CCCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC-cceee
Confidence            46789999998887776654    5889999977                   999999999999999998886 45665


Q ss_pred             EecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH--H-HHHHHHHHh--hccCCCcEEEEe
Q 041970          253 HLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN--P-LLQLADHIV--SYAKPGAVVGIS  321 (327)
Q Consensus       253 ~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~--v-L~~L~p~i~--~~LkpGG~LIlS  321 (327)
                      .  ..|..        ..+. .       ......+||+|++.++..  . +..++..+.  .+|+++|.+|+-
T Consensus        97 ~--~~d~~--------~~l~-~-------~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E  152 (183)
T PF03602_consen   97 I--KGDAF--------KFLL-K-------LAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIE  152 (183)
T ss_dssp             E--ESSHH--------HHHH-H-------HHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred             e--ccCHH--------HHHH-h-------hcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            4  34431        1111 0       001257899999998742  2 356666666  789999998863

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.32  E-value=0.00083  Score=59.57  Aligned_cols=106  Identities=22%  Similarity=0.323  Sum_probs=60.1

Q ss_pred             CCCc--hhhHHHHHHHHHhh--------hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcC-
Q 041970          196 GTGE--HATTKLCLLLLRSL--------IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNN-  244 (327)
Q Consensus       196 GTG~--H~TT~lcLe~Le~~--------~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNg-  244 (327)
                      |||.  =|......++|.+.        ...|++||++||                    +|.++ +++..+.|+++|+ 
T Consensus        15 ~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~   93 (173)
T PF10294_consen   15 GTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS   93 (173)
T ss_dssp             --------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--
T ss_pred             CCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc
Confidence            4554  46777777777763        356789999999                    99999 9999999999998 


Q ss_pred             -CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEc-CC--hHHHHHHHHHHhhccCCCcEEEE
Q 041970          245 -IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIAN-IL--LNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       245 -v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvAN-Il--a~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                       .. .++.+..  -+.     .   ++...        ......+||+|+|- ++  ...+..|+..+.++++++|.+++
T Consensus        94 ~~~-~~v~v~~--L~W-----g---~~~~~--------~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~  154 (173)
T PF10294_consen   94 LLD-GRVSVRP--LDW-----G---DELDS--------DLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLL  154 (173)
T ss_dssp             -------EEEE----T-----T---S-HHH--------HHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEE
T ss_pred             ccc-ccccCcE--EEe-----c---Ccccc--------cccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEE
Confidence             33 4555532  222     1   11100        01124589999974 33  35567788889999999998665


Q ss_pred             e
Q 041970          321 S  321 (327)
Q Consensus       321 S  321 (327)
                      +
T Consensus       155 ~  155 (173)
T PF10294_consen  155 A  155 (173)
T ss_dssp             E
T ss_pred             E
Confidence            5

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.31  E-value=0.00045  Score=61.76  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=25.6

Q ss_pred             HHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHH
Q 041970          207 LLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQ  238 (327)
Q Consensus       207 Le~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~e  238 (327)
                      |+.+.+.++++++|||+||                   +|+++.+++.|++
T Consensus         4 ~~~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~   54 (194)
T TIGR02081         4 LESILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA   54 (194)
T ss_pred             HHHHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH
Confidence            4556666677889999999                   8999999988764

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.28  E-value=0.0017  Score=66.58  Aligned_cols=99  Identities=16%  Similarity=0.133  Sum_probs=70.4

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      +...++..+|..-.++|++|||+++                     .|+++.-++..++|+++-|+.  .+.+.  ..|.
T Consensus        98 ~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~--nv~v~--~~D~  173 (470)
T PRK11933         98 ASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS--NVALT--HFDG  173 (470)
T ss_pred             HHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEE--eCch
Confidence            3456666666434578999999999                     999999999999999999986  24443  2332


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC-------------------------hHHHHHHHHHHhhccCC
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL-------------------------LNPLLQLADHIVSYAKP  314 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl-------------------------a~vL~~L~p~i~~~Lkp  314 (327)
                      .         .+.         .. ..+.||.|+....                         +..-.+|+....+.|||
T Consensus       174 ~---------~~~---------~~-~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp  234 (470)
T PRK11933        174 R---------VFG---------AA-LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP  234 (470)
T ss_pred             h---------hhh---------hh-chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            1         000         01 1357999997753                         12235688889999999


Q ss_pred             CcEEEEee
Q 041970          315 GAVVGISG  322 (327)
Q Consensus       315 GG~LIlSG  322 (327)
                      ||+|+.|-
T Consensus       235 GG~LVYST  242 (470)
T PRK11933        235 GGTLVYST  242 (470)
T ss_pred             CcEEEEEC
Confidence            99999884

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.21  E-value=0.0027  Score=59.37  Aligned_cols=92  Identities=14%  Similarity=0.305  Sum_probs=73.5

Q ss_pred             CCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          216 GGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       216 ~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      ..+++||+|+                     +|||+.+.+.+.+-.++.|+. .+|++.  .+.++     .+.++++. 
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-~KI~~i--~g~a~-----esLd~l~~-  143 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-HKITFI--EGPAL-----ESLDELLA-  143 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-ceeeee--ecchh-----hhHHHHHh-
Confidence            4679999998                     999999999999999999998 678874  56653     34444442 


Q ss_pred             cccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          275 LSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                             .. +.+.||.++..--..-.......+.+++|+||.|+.-.+|
T Consensus       144 -------~~-~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl  185 (237)
T KOG1663|consen  144 -------DG-ESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVL  185 (237)
T ss_pred             -------cC-CCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccc
Confidence                   11 3678999998887777778889999999999999987654

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.17  E-value=0.0014  Score=66.83  Aligned_cols=90  Identities=18%  Similarity=0.317  Sum_probs=59.7

Q ss_pred             HHHHHHhhhcC------CCeeeeeee------------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEec
Q 041970          206 CLLLLRSLIKG------GELFLDYGT------------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLV  255 (327)
Q Consensus       206 cLe~Le~~~~~------g~~VLDvGc------------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~  255 (327)
                      ..++|.+....      ++.||||||                        |+.+|.|+...++-++.|+.+ ++|+|.  
T Consensus       170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-~~V~vi--  246 (448)
T PF05185_consen  170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-DKVTVI--  246 (448)
T ss_dssp             HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-TTEEEE--
T ss_pred             HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-CeEEEE--
Confidence            34455555443      357999999                        999999998888888899997 678874  


Q ss_pred             CCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEE
Q 041970          256 PDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LI  319 (327)
                      .+|.                     +.+...+++|+||+=++.     +...+.+....+.|||||.+|
T Consensus       247 ~~d~---------------------r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  247 HGDM---------------------REVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             ES-T---------------------TTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             eCcc---------------------cCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            4554                     123335699999998763     233345667788999999876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PLN02823 spermine synthase

Probab=97.11  E-value=0.0023  Score=62.99  Aligned_cols=75  Identities=20%  Similarity=0.363  Sum_probs=50.8

Q ss_pred             ecCCHHHHHHHHHHHHhcC--CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh----H
Q 041970          226 VDIDPQVIKSAHQNAALNN--IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL----N  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNg--v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla----~  299 (327)
                      ||||+..++.|+++...++  ....|++++  .+|..         ..+.        .  ..++||+|+....-    .
T Consensus       133 VEiD~~vv~lar~~~~~~~~~~~dprv~v~--~~Da~---------~~L~--------~--~~~~yDvIi~D~~dp~~~~  191 (336)
T PLN02823        133 CDIDQEVVDFCRKHLTVNREAFCDKRLELI--INDAR---------AELE--------K--RDEKFDVIIGDLADPVEGG  191 (336)
T ss_pred             EECCHHHHHHHHHhcccccccccCCceEEE--EChhH---------HHHh--------h--CCCCccEEEecCCCccccC
Confidence            9999999999999987654  334577775  35542         1111        1  14689999998532    1


Q ss_pred             H-----HHHHHH-HHhhccCCCcEEEEe
Q 041970          300 P-----LLQLAD-HIVSYAKPGAVVGIS  321 (327)
Q Consensus       300 v-----L~~L~p-~i~~~LkpGG~LIlS  321 (327)
                      +     -.++.. .+.++|+|||.+++-
T Consensus       192 ~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        192 PCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             cchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            1     124555 788999999998753

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.11  E-value=0.00021  Score=66.89  Aligned_cols=77  Identities=22%  Similarity=0.383  Sum_probs=52.8

Q ss_pred             Ceeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccccc
Q 041970          218 ELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHK  279 (327)
Q Consensus       218 ~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~  279 (327)
                      +++||+||                  |||+..+++.|.|.    |+- +.+.    +.++.         .+.       
T Consensus       127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eK----g~Y-D~L~----~Aea~---------~Fl-------  181 (287)
T COG4976         127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEK----GLY-DTLY----VAEAV---------LFL-------  181 (287)
T ss_pred             ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhc----cch-HHHH----HHHHH---------HHh-------
Confidence            69999999                  99999999998764    221 1111    11110         000       


Q ss_pred             ccCCCCCCCeeEEEEc---CChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          280 IRGISETEEYDVVIAN---ILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       280 ~~~~~~~~~fDlVvAN---Ila~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                       +.. ..++||+|+|-   +...-|..++......|+|||.|++|
T Consensus       182 -~~~-~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFS  224 (287)
T COG4976         182 -EDL-TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFS  224 (287)
T ss_pred             -hhc-cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEE
Confidence             001 25789999975   23456778899999999999999998

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.09  E-value=0.0047  Score=62.76  Aligned_cols=114  Identities=22%  Similarity=0.290  Sum_probs=70.2

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHHHhhhc--CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcC
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIK--GGELFLDYGT------------------VDIDPQVIKSAHQNAALNN  244 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~--~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNg  244 (327)
                      +...+.|+-.|=+ ...-+.-.+++..+.+.  ++++|||+=|                  +|+++.||+.|++||+.|+
T Consensus       261 ~~~~~~~~sF~Q~-N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~  339 (432)
T COG2265         261 VSFQISPRSFFQV-NPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANG  339 (432)
T ss_pred             eEEEeCCCCceec-CHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcC
Confidence            4456677644443 33444444454444443  6689999988                  9999999999999999999


Q ss_pred             CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHH-HHHHHHhhccCCCcEEEEe
Q 041970          245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLL-QLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~-~L~p~i~~~LkpGG~LIlS  321 (327)
                      +. + +.+.  .++.         .++..        .......+|+||.++...=+. .++..+.+ ++|...+++|
T Consensus       340 i~-N-~~f~--~~~a---------e~~~~--------~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~-~~p~~IvYVS  395 (432)
T COG2265         340 ID-N-VEFI--AGDA---------EEFTP--------AWWEGYKPDVVVVDPPRAGADREVLKQLAK-LKPKRIVYVS  395 (432)
T ss_pred             CC-c-EEEE--eCCH---------HHHhh--------hccccCCCCEEEECCCCCCCCHHHHHHHHh-cCCCcEEEEe
Confidence            97 3 6664  3443         22211        111235789999998753222 34444333 4555555554

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.07  E-value=0.0084  Score=55.92  Aligned_cols=93  Identities=10%  Similarity=0.117  Sum_probs=57.3

Q ss_pred             HHHHhhh-cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCC-------------CCcEEEEec
Q 041970          208 LLLRSLI-KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIG-------------PKKMKLHLV  255 (327)
Q Consensus       208 e~Le~~~-~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~-------------~~~v~v~~~  255 (327)
                      +++.++. .+|.+||+.||                  +|+++.||+.+.+.   |++.             ...+++.  
T Consensus        34 ~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e---~~~~~~~~~~~~~~~~~~~~i~~~--  108 (226)
T PRK13256         34 KHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQ---NTINYEVIHGNDYKLYKGDDIEIY--  108 (226)
T ss_pred             HHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHH---cCCCcceecccccceeccCceEEE--
Confidence            4444443 35679999999                  99999999998552   2111             1234543  


Q ss_pred             CCCCCCCCccccccchhhhcccccccCC-CCCCCeeEEEEc-----CChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          256 PDRTFPSSMNERVDGIVEYLSSHKIRGI-SETEEYDVVIAN-----ILLNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~-~~~~~fDlVvAN-----Ila~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      .+|.+.         +         ... ...++||+|.==     +..+.=.+.+..+.++|+|||.+++--+
T Consensus       109 ~gD~f~---------l---------~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~  164 (226)
T PRK13256        109 VADIFN---------L---------PKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM  164 (226)
T ss_pred             EccCcC---------C---------CccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence            466641         1         000 013579997521     2233345678889999999999887544

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.06  E-value=0.0051  Score=55.84  Aligned_cols=105  Identities=19%  Similarity=0.258  Sum_probs=71.8

Q ss_pred             CCCchhhHHHHHHHHHhhhc----CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEE
Q 041970          196 GTGEHATTKLCLLLLRSLIK----GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKL  252 (327)
Q Consensus       196 GTG~H~TT~lcLe~Le~~~~----~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v  252 (327)
                      |.|+-|||--.-|.|=..+.    .|.++||+-+                   ||.|..|+...++|++.-++. .+.++
T Consensus        19 ~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~-~~~~~   97 (187)
T COG0742          19 GPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE-GEARV   97 (187)
T ss_pred             CCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc-cceEE
Confidence            57889999888887776654    4789999966                   999999999999999988865 34554


Q ss_pred             EecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH--HHHHHHHH----HhhccCCCcEEEE
Q 041970          253 HLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN--PLLQLADH----IVSYAKPGAVVGI  320 (327)
Q Consensus       253 ~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~--vL~~L~p~----i~~~LkpGG~LIl  320 (327)
                      .  ..|..         ..+.        ......+||+|+..++.+  .+......    -..+|+|+|.+++
T Consensus        98 ~--~~da~---------~~L~--------~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~  152 (187)
T COG0742          98 L--RNDAL---------RALK--------QLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVV  152 (187)
T ss_pred             E--eecHH---------HHHH--------hcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEE
Confidence            3  34431         1111        111123599999998754  33211122    3477999999886

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.04  E-value=0.0032  Score=62.83  Aligned_cols=108  Identities=13%  Similarity=0.256  Sum_probs=71.2

Q ss_pred             EEEccCcccCCCchhhHHHHHHHHHhhhcC--CCeeeeeee---------------------ecCCHHHHHHHHHHHHhc
Q 041970          187 IILNPGLAFGTGEHATTKLCLLLLRSLIKG--GELFLDYGT---------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       187 I~idPG~AFGTG~H~TT~lcLe~Le~~~~~--g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      +.-+|-|.|.-   -.+-+++....+...+  +-+|||+.|                     +|++|.|++.+++|+++|
T Consensus        16 vFYNP~~~~nR---Dlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N   92 (374)
T TIGR00308        16 VFYNPRMQFNR---DLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN   92 (374)
T ss_pred             cccCchhhccc---cHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            45566676652   2344555444433221  137888777                     999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ++.  .+++.  .+|+.         .++.        .  ...+||+|..++.. .-..+++.+.+.+++||+|.++
T Consensus        93 ~~~--~~~v~--~~Da~---------~~l~--------~--~~~~fDvIdlDPfG-s~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308        93 SVE--NIEVP--NEDAA---------NVLR--------Y--RNRKFHVIDIDPFG-TPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             CCC--cEEEE--chhHH---------HHHH--------H--hCCCCCEEEeCCCC-CcHHHHHHHHHhcccCCEEEEE
Confidence            985  35543  44531         1211        0  13579999999953 3245777888889999999876

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PTZ00146 fibrillarin; Provisional

Probab=97.02  E-value=0.0025  Score=61.63  Aligned_cols=35  Identities=23%  Similarity=0.197  Sum_probs=26.5

Q ss_pred             CCeeEEEEcCCh-HHHHHHHHHHhhccCCCcEEEEe
Q 041970          287 EEYDVVIANILL-NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       287 ~~fDlVvANIla-~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      +.+|+|+++... +....++..+.++|||||+|+++
T Consensus       201 ~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        201 PMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence            479999998742 33334566788899999999984

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.00  E-value=0.0016  Score=59.61  Aligned_cols=78  Identities=21%  Similarity=0.328  Sum_probs=53.0

Q ss_pred             CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .|++|||+|+                   .|+||.++...+-|++.||++   +.+.  ..|..                
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~---i~~~--~~d~~----------------  137 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS---ILFT--HADLI----------------  137 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce---eEEe--ecccc----------------
Confidence            5788999888                   899999999999999999986   3332  33431                


Q ss_pred             cccccCCCCCCCeeEEEEc-CCh--HHHHHHHHHHhhccCCCcEEEEee
Q 041970          277 SHKIRGISETEEYDVVIAN-ILL--NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvAN-Ila--~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                             ..+..||+|++- +..  ..-.+++| ....++..|.-++-|
T Consensus       138 -------g~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvg  178 (218)
T COG3897         138 -------GSPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVG  178 (218)
T ss_pred             -------CCCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEe
Confidence                   125689999985 322  33345666 445555556555544

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.98  E-value=0.0028  Score=55.30  Aligned_cols=76  Identities=18%  Similarity=0.243  Sum_probs=51.2

Q ss_pred             ecCCHHHHHHHHHHHHhcCCC-CCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH---H
Q 041970          226 VDIDPQVIKSAHQNAALNNIG-PKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---L  301 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~-~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L  301 (327)
                      +|+++.+++.|+++.+..+.. ..++++.  .+|..         ++          +. .+++||+|+++.....   .
T Consensus         3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~--~~d~~---------~l----------p~-~~~~fD~v~~~~~l~~~~d~   60 (160)
T PLN02232          3 LDFSSEQLAVAATRQSLKARSCYKCIEWI--EGDAI---------DL----------PF-DDCEFDAVTMGYGLRNVVDR   60 (160)
T ss_pred             EcCCHHHHHHHHHhhhcccccCCCceEEE--Eechh---------hC----------CC-CCCCeeEEEecchhhcCCCH
Confidence            799999999998876543211 1346654  35541         11          11 2568999999864332   4


Q ss_pred             HHHHHHHhhccCCCcEEEEeec
Q 041970          302 LQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       302 ~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      ...+.++.+.|||||+|++.-+
T Consensus        61 ~~~l~ei~rvLkpGG~l~i~d~   82 (160)
T PLN02232         61 LRAMKEMYRVLKPGSRVSILDF   82 (160)
T ss_pred             HHHHHHHHHHcCcCeEEEEEEC
Confidence            5678899999999999987543

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=96.97  E-value=0.0016  Score=62.85  Aligned_cols=61  Identities=20%  Similarity=0.376  Sum_probs=44.6

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .++++|||+||                  +|+|+.+++.+++|++.++.. +++++.  .+|.+         +      
T Consensus        35 ~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~-~~v~ii--~~Dal---------~------   96 (294)
T PTZ00338         35 KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLA-SKLEVI--EGDAL---------K------   96 (294)
T ss_pred             CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCC-CcEEEE--ECCHh---------h------
Confidence            45677888887                  999999999999999887754 457764  56653         0      


Q ss_pred             cccccCCCCCCCeeEEEEcCChHH
Q 041970          277 SHKIRGISETEEYDVVIANILLNP  300 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~v  300 (327)
                            . ...+||+|++|+...+
T Consensus        97 ------~-~~~~~d~VvaNlPY~I  113 (294)
T PTZ00338         97 ------T-EFPYFDVCVANVPYQI  113 (294)
T ss_pred             ------h-cccccCEEEecCCccc
Confidence                  1 1246899999987543

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=96.97  E-value=0.0017  Score=63.55  Aligned_cols=98  Identities=20%  Similarity=0.281  Sum_probs=62.3

Q ss_pred             HHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHh--cCCCCCcEEEEecCCCCCCCCcccc
Q 041970          209 LLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPSSMNER  267 (327)
Q Consensus       209 ~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~l--Ngv~~~~v~v~~~~~d~~~~~~~g~  267 (327)
                      +|.+|.++++.++|+||                   +||....|+.|++-.+.  |.-..-.+.+....+|++    -++
T Consensus       110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~----~~~  185 (389)
T KOG1975|consen  110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF----KER  185 (389)
T ss_pred             HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc----hhH
Confidence            56777889999999999                   99999999999875542  111100112222356653    122


Q ss_pred             ccchhhhcccccccCCCCCCCeeEEEEcCCh-------HHHHHHHHHHhhccCCCcEEEE
Q 041970          268 VDGIVEYLSSHKIRGISETEEYDVVIANILL-------NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       268 ~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      ..++.         . ..+.+||+|=+-...       .-...++..++++|+|||++|-
T Consensus       186 l~d~~---------e-~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg  235 (389)
T KOG1975|consen  186 LMDLL---------E-FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG  235 (389)
T ss_pred             HHHhc---------c-CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence            22221         1 113349999776532       3455678899999999999884

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.95  E-value=0.0066  Score=55.85  Aligned_cols=101  Identities=17%  Similarity=0.179  Sum_probs=65.5

Q ss_pred             HHHHHHHhhhcCCCe-eeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCC--cEEEEecCCCCCC
Q 041970          205 LCLLLLRSLIKGGEL-FLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPK--KMKLHLVPDRTFP  261 (327)
Q Consensus       205 lcLe~Le~~~~~g~~-VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~--~v~v~~~~~d~~~  261 (327)
                      -.++.|.+++....+ ||+|||                    .|.|+.....-++.++..++++-  -+.+.+.....  
T Consensus        13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w--   90 (204)
T PF06080_consen   13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPW--   90 (204)
T ss_pred             HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCC--
Confidence            357788888776665 999999                    99999998787777777665421  12221111100  


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEE-cCC----hHHHHHHHHHHhhccCCCcEEEEee
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIA-NIL----LNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvA-NIl----a~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                          .+..           ......++||.|++ |.+    ......|+....++|++||.|++=|
T Consensus        91 ----~~~~-----------~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG  141 (204)
T PF06080_consen   91 ----PWEL-----------PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG  141 (204)
T ss_pred             ----cccc-----------ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence                0000           00002468999986 643    3456789999999999999999876

The function of this family is unknown.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.91  E-value=0.0026  Score=56.55  Aligned_cols=39  Identities=15%  Similarity=0.111  Sum_probs=29.4

Q ss_pred             CCCeeEEEEcCCh--------H------HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          286 TEEYDVVIANILL--------N------PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       286 ~~~fDlVvANIla--------~------vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .++||+|++|...        +      .+..++..+.+.|+|||++++.+..
T Consensus        96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438        96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence            4579999998521        1      1356788899999999999997654

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.88  E-value=0.0043  Score=61.93  Aligned_cols=74  Identities=23%  Similarity=0.297  Sum_probs=55.9

Q ss_pred             eecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCC-CCeeEEEEcCCh-----
Q 041970          225 TVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISET-EEYDVVIANILL-----  298 (327)
Q Consensus       225 cVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~-~~fDlVvANIla-----  298 (327)
                      |+|||+.+|+.|+.||+..|+. +.|++.  ++|+-         .            +... +.+|+||+|++.     
T Consensus       259 G~Did~r~i~~Ak~NA~~AGv~-d~I~f~--~~d~~---------~------------l~~~~~~~gvvI~NPPYGeRlg  314 (381)
T COG0116         259 GSDIDPRHIEGAKANARAAGVG-DLIEFK--QADAT---------D------------LKEPLEEYGVVISNPPYGERLG  314 (381)
T ss_pred             EecCCHHHHHHHHHHHHhcCCC-ceEEEE--Ecchh---------h------------CCCCCCcCCEEEeCCCcchhcC
Confidence            4899999999999999999998 678875  34431         1            1112 689999999864     


Q ss_pred             ------HHHHHHHHHHhhccCCCcEEEEee
Q 041970          299 ------NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       299 ------~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                            ..+..|...+.+.++-.+.+|+++
T Consensus       315 ~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         315 SEALVAKLYREFGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             ChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence                  234556677778888888888876

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.88  E-value=0.0019  Score=61.67  Aligned_cols=73  Identities=22%  Similarity=0.440  Sum_probs=44.7

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHH----
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL----  301 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL----  301 (327)
                      +|+|+.++..|+.|+.++++......+.  .+|.+.       .           .......+||+|++|++....    
T Consensus        83 ~ei~~~~~~la~~nl~l~~~~~~~~~i~--~~d~l~-------~-----------~~~~~~~~~D~ii~NPPf~~~~~~~  142 (311)
T PF02384_consen   83 IEIDPEAVALAKLNLLLHGIDNSNINII--QGDSLE-------N-----------DKFIKNQKFDVIIGNPPFGSKEWKD  142 (311)
T ss_dssp             EES-HHHHHHHHHHHHHTTHHCBGCEEE--ES-TTT-------S-----------HSCTST--EEEEEEE--CTCES-ST
T ss_pred             ecCcHHHHHHHHhhhhhhcccccccccc--cccccc-------c-----------cccccccccccccCCCCcccccccc
Confidence            8999999999999999998764433332  355430       0           011114689999999863211    


Q ss_pred             --------------------HHHHHHHhhccCCCcEE
Q 041970          302 --------------------LQLADHIVSYAKPGAVV  318 (327)
Q Consensus       302 --------------------~~L~p~i~~~LkpGG~L  318 (327)
                                          ..++..+.+.|++||++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~  179 (311)
T PF02384_consen  143 EELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA  179 (311)
T ss_dssp             GGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred             ccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence                                23567788999999974

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.87  E-value=0.0046  Score=66.29  Aligned_cols=76  Identities=21%  Similarity=0.208  Sum_probs=48.5

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------  298 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------  298 (327)
                      +|+|+.|++.|++|++.+|+. +++.+.  .+|..         ++.         .....++||+||+|++.       
T Consensus       262 ~Did~~av~~A~~N~~~~g~~-~~i~~~--~~D~~---------~~~---------~~~~~~~~d~IvtNPPYg~r~~~~  320 (702)
T PRK11783        262 SDIDPRVIQAARKNARRAGVA-ELITFE--VKDVA---------DLK---------NPLPKGPTGLVISNPPYGERLGEE  320 (702)
T ss_pred             EECCHHHHHHHHHHHHHcCCC-cceEEE--eCChh---------hcc---------cccccCCCCEEEECCCCcCccCch
Confidence            899999999999999999997 567764  45542         110         00113469999999864       


Q ss_pred             HHHHHHHHHHhhcc---CCCcEE-EEee
Q 041970          299 NPLLQLADHIVSYA---KPGAVV-GISG  322 (327)
Q Consensus       299 ~vL~~L~p~i~~~L---kpGG~L-IlSG  322 (327)
                      .-+..+-..+.+.+   .+|+.+ +++|
T Consensus       321 ~~l~~lY~~lg~~lk~~~~g~~~~llt~  348 (702)
T PRK11783        321 PALIALYSQLGRRLKQQFGGWNAALFSS  348 (702)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            22333433333333   377765 4554

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.87  E-value=0.0025  Score=61.97  Aligned_cols=38  Identities=16%  Similarity=0.284  Sum_probs=29.1

Q ss_pred             CCCeeEEEEcCC----hHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          286 TEEYDVVIANIL----LNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       286 ~~~fDlVvANIl----a~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .+.||+|++--+    .+++. .+.++...|+|||.||+--++
T Consensus       180 ~~~FDtVF~MGVLYHrr~Pl~-~L~~Lk~~L~~gGeLvLETlv  221 (315)
T PF08003_consen  180 LGAFDTVFSMGVLYHRRSPLD-HLKQLKDSLRPGGELVLETLV  221 (315)
T ss_pred             cCCcCEEEEeeehhccCCHHH-HHHHHHHhhCCCCEEEEEEee
Confidence            568999998753    34554 566889999999999986554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=96.85  E-value=0.0055  Score=58.36  Aligned_cols=73  Identities=14%  Similarity=0.276  Sum_probs=49.1

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCc-EEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEc-CCh--HHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKK-MKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIAN-ILL--NPL  301 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~-v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvAN-Ila--~vL  301 (327)
                      .||+|.++..+++-++.-++..+. +.+  +.+|+         +++          ++ ++..||..+.- -+.  -.+
T Consensus       136 ~Dinp~mL~vgkqRa~~~~l~~~~~~~w--~~~dA---------E~L----------pF-dd~s~D~yTiafGIRN~th~  193 (296)
T KOG1540|consen  136 LDINPHMLAVGKQRAKKRPLKASSRVEW--VEGDA---------EDL----------PF-DDDSFDAYTIAFGIRNVTHI  193 (296)
T ss_pred             EeCCHHHHHHHHHHHhhcCCCcCCceEE--EeCCc---------ccC----------CC-CCCcceeEEEecceecCCCH
Confidence            699999999999999887776432 444  34554         111          23 36789987642 222  123


Q ss_pred             HHHHHHHhhccCCCcEEEE
Q 041970          302 LQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       302 ~~L~p~i~~~LkpGG~LIl  320 (327)
                      .+-+.+.+++|||||+|.+
T Consensus       194 ~k~l~EAYRVLKpGGrf~c  212 (296)
T KOG1540|consen  194 QKALREAYRVLKPGGRFSC  212 (296)
T ss_pred             HHHHHHHHHhcCCCcEEEE
Confidence            4566788999999999874

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=96.78  E-value=0.0054  Score=56.87  Aligned_cols=79  Identities=15%  Similarity=0.299  Sum_probs=55.7

Q ss_pred             eeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEE-EEecCCCCCCCCccccccchhhhcccc
Q 041970          219 LFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMK-LHLVPDRTFPSSMNERVDGIVEYLSSH  278 (327)
Q Consensus       219 ~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~-v~~~~~d~~~~~~~g~~~~l~~~~~~~  278 (327)
                      .||+|||                   +|-++.+-+.|.+-++.|.-  .++. +.+..+.-+                  
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~--~~~~~fvva~ge~l------------------  138 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP--LQVERFVVADGENL------------------  138 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC--cceEEEEeechhcC------------------
Confidence            5799998                   99999999999999988843  2344 433222211                  


Q ss_pred             cccCCCCCCCeeEEEEcCCh---HHHHHHHHHHhhccCCCcEEEE
Q 041970          279 KIRGISETEEYDVVIANILL---NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       279 ~~~~~~~~~~fDlVvANIla---~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                        ..+ ++++||.||+-...   .--.+.+..+.++|||||++|+
T Consensus       139 --~~l-~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif  180 (252)
T KOG4300|consen  139 --PQL-ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF  180 (252)
T ss_pred             --ccc-ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence              112 37899999987642   2234567899999999999987

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.77  E-value=0.009  Score=55.55  Aligned_cols=84  Identities=21%  Similarity=0.316  Sum_probs=59.9

Q ss_pred             HHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          207 LLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       207 Le~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      |+.+..+++.|.++.|+||                    .|+.+-.++.|..|++.|++. ++++++.  +|.+      
T Consensus         7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~-~~i~vr~--~dgl------   77 (226)
T COG2384           7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS-ERIDVRL--GDGL------   77 (226)
T ss_pred             HHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc-ceEEEec--cCCc------
Confidence            5677788889999999999                    999999999999999999997 7888863  5542      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEE-EcCChHHHHHHHHHHhhccC
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVI-ANILLNPLLQLADHIVSYAK  313 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVv-ANIla~vL~~L~p~i~~~Lk  313 (327)
                                    ..+..+..+|+|+ |-.=...+..++.+-.+.|+
T Consensus        78 --------------~~l~~~d~~d~ivIAGMGG~lI~~ILee~~~~l~  111 (226)
T COG2384          78 --------------AVLELEDEIDVIVIAGMGGTLIREILEEGKEKLK  111 (226)
T ss_pred             --------------cccCccCCcCEEEEeCCcHHHHHHHHHHhhhhhc
Confidence                          1232344677664 55444444455555444444

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.0078  Score=55.81  Aligned_cols=92  Identities=21%  Similarity=0.355  Sum_probs=64.6

Q ss_pred             HHHHHHHHhhhcCCCeeeeeee----------------------ecCCHHHHHHHHHHHHhcCC--------CCCcEEEE
Q 041970          204 KLCLLLLRSLIKGGELFLDYGT----------------------VDIDPQVIKSAHQNAALNNI--------GPKKMKLH  253 (327)
Q Consensus       204 ~lcLe~Le~~~~~g~~VLDvGc----------------------VDIDp~AV~~A~eNa~lNgv--------~~~~v~v~  253 (327)
                      .-.++.|+.++++|.+.||+|+                      ||.-|+.|+.+++|+..---        +..++.+ 
T Consensus        70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i-  148 (237)
T KOG1661|consen   70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI-  148 (237)
T ss_pred             HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE-
Confidence            4578999999999999999999                      89999999999999876531        1122333 


Q ss_pred             ecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                       +.||..                    ...++..+||.|.+---+..   +-..+...|++||++++
T Consensus       149 -vvGDgr--------------------~g~~e~a~YDaIhvGAaa~~---~pq~l~dqL~~gGrlli  191 (237)
T KOG1661|consen  149 -VVGDGR--------------------KGYAEQAPYDAIHVGAAASE---LPQELLDQLKPGGRLLI  191 (237)
T ss_pred             -EeCCcc--------------------ccCCccCCcceEEEccCccc---cHHHHHHhhccCCeEEE
Confidence             245541                    12234679999998844332   33455667888888775

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=96.68  E-value=0.0042  Score=61.15  Aligned_cols=81  Identities=15%  Similarity=0.186  Sum_probs=56.4

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      ..++.||||||                   ||.+..| +.|++.++.|+++ +.|++.  +|..         .++    
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~-~ii~vi--~gkv---------Edi----  121 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLE-DVITVI--KGKV---------EDI----  121 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCcc-ceEEEe--ecce---------EEE----
Confidence            46889999999                   9988877 9999999999998 667764  3443         332    


Q ss_pred             ccccccCCCCCCCeeEEEEcCChH------HHHHHHHHHhhccCCCcEEE
Q 041970          276 SSHKIRGISETEEYDVVIANILLN------PLLQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~------vL~~L~p~i~~~LkpGG~LI  319 (327)
                            .+ +.++.|+|++-=..-      -|...+-.--+.|+|||.++
T Consensus       122 ------~L-P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  122 ------EL-PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             ------ec-CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence                  12 247999999874322      22223334458899999754

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.62  E-value=0.019  Score=56.88  Aligned_cols=99  Identities=21%  Similarity=0.271  Sum_probs=69.9

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee----------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT----------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDR  258 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc----------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d  258 (327)
                      +..+++...|.  .++|.+|||+..                      +|+|+.-++..++|+++-|+.+  +.+..  .|
T Consensus       143 ~sS~l~a~~L~--p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n--v~~~~--~d  216 (355)
T COG0144         143 EASQLPALVLD--PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN--VIVVN--KD  216 (355)
T ss_pred             HHHHHHHHHcC--CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc--eEEEe--cc
Confidence            44566665655  578999999988                      8999999999999999999873  44332  22


Q ss_pred             CCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC-------------------------hHHHHHHHHHHhhccC
Q 041970          259 TFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL-------------------------LNPLLQLADHIVSYAK  313 (327)
Q Consensus       259 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl-------------------------a~vL~~L~p~i~~~Lk  313 (327)
                      ..      ...+           .....++||.|+....                         +..-.+|+....+.||
T Consensus       217 ~~------~~~~-----------~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk  279 (355)
T COG0144         217 AR------RLAE-----------LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK  279 (355)
T ss_pred             cc------cccc-----------cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            10      0000           1111336999998853                         2445678889999999


Q ss_pred             CCcEEEEee
Q 041970          314 PGAVVGISG  322 (327)
Q Consensus       314 pGG~LIlSG  322 (327)
                      |||+|+.|-
T Consensus       280 ~GG~LVYST  288 (355)
T COG0144         280 PGGVLVYST  288 (355)
T ss_pred             CCCEEEEEc
Confidence            999999884

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.58  E-value=0.0067  Score=55.86  Aligned_cols=98  Identities=21%  Similarity=0.360  Sum_probs=68.8

Q ss_pred             cccCCCchhhHHHHH-HHHHhhh--cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCc
Q 041970          193 LAFGTGEHATTKLCL-LLLRSLI--KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKK  249 (327)
Q Consensus       193 ~AFGTG~H~TT~lcL-e~Le~~~--~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~  249 (327)
                      ..|..+.+..++... ..+.+..  .+.++|+|||.                    .|. |..++.|++        .+|
T Consensus        74 ~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~r  144 (241)
T PF00891_consen   74 KRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADR  144 (241)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTT
T ss_pred             HHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccc
Confidence            347777788888777 6655543  34568999999                    897 888888888        267


Q ss_pred             EEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEE-cCCh----HHHHHHHHHHhhccCCC--cEEEEee
Q 041970          250 MKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIA-NILL----NPLLQLADHIVSYAKPG--AVVGISG  322 (327)
Q Consensus       250 v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvA-NIla----~vL~~L~p~i~~~LkpG--G~LIlSG  322 (327)
                      +++.  .+|.+        +            .+  .. +|+++. |++.    +-...++..+++.|+||  |+|++..
T Consensus       145 v~~~--~gd~f--------~------------~~--P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  145 VEFV--PGDFF--------D------------PL--PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             EEEE--ES-TT--------T------------CC--SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             cccc--cccHH--------h------------hh--cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            8874  57763        1            12  33 998865 6663    45677899999999999  9988876


Q ss_pred             cc
Q 041970          323 IL  324 (327)
Q Consensus       323 Il  324 (327)
                      .+
T Consensus       200 ~~  201 (241)
T PF00891_consen  200 MV  201 (241)
T ss_dssp             EE
T ss_pred             ec
Confidence            55

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=96.57  E-value=0.0025  Score=58.97  Aligned_cols=96  Identities=21%  Similarity=0.296  Sum_probs=56.3

Q ss_pred             HHHHHhh-hcCCCeeeeeee------------------ecCCHHHHHHHH-HHHHhcCCC---------CCcEEEEecCC
Q 041970          207 LLLLRSL-IKGGELFLDYGT------------------VDIDPQVIKSAH-QNAALNNIG---------PKKMKLHLVPD  257 (327)
Q Consensus       207 Le~Le~~-~~~g~~VLDvGc------------------VDIDp~AV~~A~-eNa~lNgv~---------~~~v~v~~~~~  257 (327)
                      .++++.. .+++.+||+.||                  +|+++.||+.|. +|.....+.         ..+|++.  .+
T Consensus        27 ~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~--~g  104 (218)
T PF05724_consen   27 VEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY--CG  104 (218)
T ss_dssp             HHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE--ES
T ss_pred             HHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE--Ec
Confidence            3444442 345679999999                  999999999984 343211111         1234554  46


Q ss_pred             CCCCCCccccccchhhhcccccccCCCCCCCeeEEEEc-----CChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          258 RTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIAN-----ILLNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       258 d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvAN-----Ila~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      |.+         ++.          ....++||+|.==     |..+.=.+.+..+.++|+|||.+++-.+
T Consensus       105 DfF---------~l~----------~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l  156 (218)
T PF05724_consen  105 DFF---------ELP----------PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITL  156 (218)
T ss_dssp             -TT---------TGG----------GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred             ccc---------cCC----------hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            764         110          0113579999732     2223334678889999999999655544

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=96.52  E-value=0.027  Score=54.58  Aligned_cols=78  Identities=13%  Similarity=0.187  Sum_probs=57.0

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------H
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------N  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------~  299 (327)
                      .|.+|..|+..++-++.+|+. +.+++.  ++|+++      .+.+         ..+  ..+.++++.--+.      +
T Consensus       167 rDys~~Nv~~g~~li~~~gL~-~i~~f~--~~dAfd------~~~l---------~~l--~p~P~l~iVsGL~ElF~Dn~  226 (311)
T PF12147_consen  167 RDYSPINVEKGRALIAERGLE-DIARFE--QGDAFD------RDSL---------AAL--DPAPTLAIVSGLYELFPDND  226 (311)
T ss_pred             EeCCHHHHHHHHHHHHHcCCc-cceEEE--ecCCCC------HhHh---------hcc--CCCCCEEEEecchhhCCcHH
Confidence            899999999999999999998 555764  688751      1111         112  3456887765543      3


Q ss_pred             HHHHHHHHHhhccCCCcEEEEeec
Q 041970          300 PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       300 vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      .+...+..+...+.|||+||..|.
T Consensus       227 lv~~sl~gl~~al~pgG~lIyTgQ  250 (311)
T PF12147_consen  227 LVRRSLAGLARALEPGGYLIYTGQ  250 (311)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEcCC
Confidence            455678889999999999999884

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.52  E-value=0.0047  Score=54.43  Aligned_cols=67  Identities=19%  Similarity=0.291  Sum_probs=47.1

Q ss_pred             HHHHHhhh--cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970          207 LLLLRSLI--KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN  265 (327)
Q Consensus       207 Le~Le~~~--~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~  265 (327)
                      +..+....  -.|++++|+||                   +||||.|++.++.|++.-.+..+   +.  +.+..     
T Consensus        37 ~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqid---lL--qcdil-----  106 (185)
T KOG3420|consen   37 LYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQID---LL--QCDIL-----  106 (185)
T ss_pred             HHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhh---ee--eeecc-----
Confidence            34444432  36899999999                   99999999999999998877633   21  23331     


Q ss_pred             ccccchhhhcccccccCCCCCCCeeEEEEcCCh
Q 041970          266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILL  298 (327)
Q Consensus       266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla  298 (327)
                          ++          .. ..+.||.+|-|+..
T Consensus       107 ----dl----------e~-~~g~fDtaviNppF  124 (185)
T KOG3420|consen  107 ----DL----------EL-KGGIFDTAVINPPF  124 (185)
T ss_pred             ----ch----------hc-cCCeEeeEEecCCC
Confidence                11          11 25789999999864

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=96.49  E-value=0.01  Score=55.73  Aligned_cols=58  Identities=14%  Similarity=0.383  Sum_probs=41.6

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .++++|||+||                  +|+|+.+++.+++|++.  .  .++++.  .+|..                
T Consensus        28 ~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~--~~v~ii--~~D~~----------------   85 (258)
T PRK14896         28 TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--A--GNVEII--EGDAL----------------   85 (258)
T ss_pred             CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--C--CCEEEE--Eeccc----------------
Confidence            46788999999                  99999999999998854  2  346654  45642                


Q ss_pred             cccccCCCCCCCeeEEEEcCChHH
Q 041970          277 SHKIRGISETEEYDVVIANILLNP  300 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~v  300 (327)
                           .+. ...||.|++|+...+
T Consensus        86 -----~~~-~~~~d~Vv~NlPy~i  103 (258)
T PRK14896         86 -----KVD-LPEFNKVVSNLPYQI  103 (258)
T ss_pred             -----cCC-chhceEEEEcCCccc
Confidence                 111 235899999987653

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=96.43  E-value=0.024  Score=53.07  Aligned_cols=92  Identities=28%  Similarity=0.404  Sum_probs=59.4

Q ss_pred             hhhHHHHHHHHHhhhcC--CCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          200 HATTKLCLLLLRSLIKG--GELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       200 H~TT~lcLe~Le~~~~~--g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      |+-+.-|||+|.  +.+  ..-||||||                  +||+|.+++.|.+ -+..|   + +-+    +|.
T Consensus        34 ~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-~e~eg---d-lil----~DM  102 (270)
T KOG1541|consen   34 AEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-RELEG---D-LIL----CDM  102 (270)
T ss_pred             HHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-hhhhc---C-eee----eec
Confidence            455777777776  333  357999999                  9999999999987 22221   2 211    232


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEE--------cCC------hHHHHHHHHHHhhccCCCcEEEEe
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIA--------NIL------LNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvA--------NIl------a~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                            |  +.+          ++ ..+.||-+++        |-.      ..-|..++..++..|++|++.++-
T Consensus       103 ------G--~Gl----------pf-rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q  159 (270)
T KOG1541|consen  103 ------G--EGL----------PF-RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ  159 (270)
T ss_pred             ------C--CCC----------CC-CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence                  1  011          12 3688998764        321      234566778899999999998763

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=96.42  E-value=0.012  Score=55.69  Aligned_cols=67  Identities=19%  Similarity=0.226  Sum_probs=43.3

Q ss_pred             hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          214 IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       214 ~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      +.+|++|||+||                  +|+|+.+++.+++|+..     .++++.  .+|..         ++    
T Consensus        40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~-----~~v~~i--~~D~~---------~~----   99 (272)
T PRK00274         40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE-----DNLTII--EGDAL---------KV----   99 (272)
T ss_pred             CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc-----CceEEE--EChhh---------cC----
Confidence            356788999999                  99999999999998742     245554  45642         10    


Q ss_pred             ccccccCCCCCCCeeEEEEcCChHHHHHHHHH
Q 041970          276 SSHKIRGISETEEYDVVIANILLNPLLQLADH  307 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~  307 (327)
                            .. ....+|.||+|+...+-..++-.
T Consensus       100 ------~~-~~~~~~~vv~NlPY~iss~ii~~  124 (272)
T PRK00274        100 ------DL-SELQPLKVVANLPYNITTPLLFH  124 (272)
T ss_pred             ------CH-HHcCcceEEEeCCccchHHHHHH
Confidence                  01 01115999999986554444333

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.42  E-value=0.0094  Score=54.34  Aligned_cols=36  Identities=17%  Similarity=0.339  Sum_probs=26.8

Q ss_pred             CCCeeEEEE-cCC----hHHHHHHHHHHhhccCCCcEEEEe
Q 041970          286 TEEYDVVIA-NIL----LNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       286 ~~~fDlVvA-NIl----a~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      .++||+|+| |.+    ...-.+++..+.+.|+|||+|++.
T Consensus       134 ~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  134 FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             ---EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence            678999999 554    244567899999999999999874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.31  E-value=0.015  Score=59.98  Aligned_cols=78  Identities=22%  Similarity=0.223  Sum_probs=43.9

Q ss_pred             hcCceEEEcCcEE--EEcCCCC---CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHH
Q 041970          163 ESFHPVEVTKGLW--IVPEWNV---QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAH  237 (327)
Q Consensus       163 ~~f~P~~vg~~l~--I~P~W~~---~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~  237 (327)
                      ++|.|..|.+.++  +.+.-..   ....-.+||+  .|||.=  ...+++.+...-.....-+++=++|||+.+++.|+
T Consensus         5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~--cGsG~f--l~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~   80 (524)
T TIGR02987         5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPC--CGDGRL--IAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK   80 (524)
T ss_pred             ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCC--CCccHH--HHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence            4677777776543  2221110   0223468997  477743  22223322211000012367777999999999999


Q ss_pred             HHHHhcC
Q 041970          238 QNAALNN  244 (327)
Q Consensus       238 eNa~lNg  244 (327)
                      .|+...+
T Consensus        81 ~~l~~~~   87 (524)
T TIGR02987        81 KLLGEFA   87 (524)
T ss_pred             HHHhhcC
Confidence            9998776

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.21  E-value=0.012  Score=56.57  Aligned_cols=98  Identities=24%  Similarity=0.375  Sum_probs=57.5

Q ss_pred             cCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHH-hcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          195 FGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAA-LNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       195 FGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~-lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      -|+|-=|.|.+||..  ++. .+..|.   |+|+||.|++.|++=++ ..|++ .++.++.  +|..         +.. 
T Consensus       127 IGSGPLPlT~i~la~--~~~-~~~~v~---~iD~d~~A~~~a~~lv~~~~~L~-~~m~f~~--~d~~---------~~~-  187 (276)
T PF03059_consen  127 IGSGPLPLTSIVLAK--QHG-PGARVH---NIDIDPEANELARRLVASDLGLS-KRMSFIT--ADVL---------DVT-  187 (276)
T ss_dssp             E---SS-HHHHHHH----HT-T--EEE---EEESSHHHHHHHHHHHH---HH--SSEEEEE--S-GG---------GG--
T ss_pred             EcCCCcchHHHHHHH--HhC-CCCeEE---EEeCCHHHHHHHHHHHhhccccc-CCeEEEe--cchh---------ccc-
Confidence            499999999999872  221 111111   28999999999998766 56776 6788763  4431         110 


Q ss_pred             hcccccccCCCCCCCeeEEEEcCChH----HHHHHHHHHhhccCCCcEEEEe
Q 041970          274 YLSSHKIRGISETEEYDVVIANILLN----PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla~----vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                               . .-..||+|+-..+.+    .=.+++..+.++++||+.+++-
T Consensus       188 ---------~-dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  188 ---------Y-DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             ---------G-G----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             ---------c-ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence                     0 135799998777776    7778999999999999988763

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.14  E-value=0.025  Score=51.92  Aligned_cols=73  Identities=18%  Similarity=0.288  Sum_probs=46.6

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCee-EEEEcCChHHHHHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYD-VVIANILLNPLLQL  304 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fD-lVvANIla~vL~~L  304 (327)
                      +||.+..++.|++|++.+|+. +++++.+  +|.+        .            .+.+.+..| +|+|-.=...+..+
T Consensus        27 ~DI~~gpL~~A~~~i~~~~l~-~~i~~rl--gdGL--------~------------~l~~~e~~d~ivIAGMGG~lI~~I   83 (205)
T PF04816_consen   27 VDINPGPLEKAKENIAKYGLE-DRIEVRL--GDGL--------E------------VLKPGEDVDTIVIAGMGGELIIEI   83 (205)
T ss_dssp             EESSHHHHHHHHHHHHHTT-T-TTEEEEE---SGG--------G------------G--GGG---EEEEEEE-HHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHcCCc-ccEEEEE--CCcc--------c------------ccCCCCCCCEEEEecCCHHHHHHH
Confidence            999999999999999999997 7888864  5542        1            122233255 55677766777777


Q ss_pred             HHHHhhccCCCcEEEEe
Q 041970          305 ADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       305 ~p~i~~~LkpGG~LIlS  321 (327)
                      +......++....|||.
T Consensus        84 Le~~~~~~~~~~~lILq  100 (205)
T PF04816_consen   84 LEAGPEKLSSAKRLILQ  100 (205)
T ss_dssp             HHHTGGGGTT--EEEEE
T ss_pred             HHhhHHHhccCCeEEEe
Confidence            77766666665677764

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=96.12  E-value=0.028  Score=52.46  Aligned_cols=67  Identities=16%  Similarity=0.354  Sum_probs=45.1

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .++++|||+||                  +|+|+.+++.+++|+..   . .++++.  .+|..         +      
T Consensus        28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~-~~v~v~--~~D~~---------~------   86 (253)
T TIGR00755        28 LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---Y-ERLEVI--EGDAL---------K------   86 (253)
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---C-CcEEEE--ECchh---------c------
Confidence            46789999999                  99999999999988743   1 345553  45542         0      


Q ss_pred             cccccCCCCCCCee---EEEEcCChHHHHHHHHHHh
Q 041970          277 SHKIRGISETEEYD---VVIANILLNPLLQLADHIV  309 (327)
Q Consensus       277 ~~~~~~~~~~~~fD---lVvANIla~vL~~L~p~i~  309 (327)
                            .. ...||   +|++|+..++-..++-.+.
T Consensus        87 ------~~-~~~~d~~~~vvsNlPy~i~~~il~~ll  115 (253)
T TIGR00755        87 ------VD-LPDFPKQLKVVSNLPYNISSPLIFKLL  115 (253)
T ss_pred             ------CC-hhHcCCcceEEEcCChhhHHHHHHHHh
Confidence                  10 12456   9999998776555544444

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.10  E-value=0.0053  Score=59.20  Aligned_cols=35  Identities=14%  Similarity=0.363  Sum_probs=28.3

Q ss_pred             CCCeeEEEE-cCCh----HHHHHHHHHHhhccCCCcEEEE
Q 041970          286 TEEYDVVIA-NILL----NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       286 ~~~fDlVvA-NIla----~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      .++||+|+| |.+.    ..-.+++..+.+.|+|||+|++
T Consensus       221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l  260 (287)
T PRK10611        221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA  260 (287)
T ss_pred             CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            468999999 5542    3466789999999999998876

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=96.06  E-value=0.043  Score=54.24  Aligned_cols=110  Identities=18%  Similarity=0.220  Sum_probs=79.9

Q ss_pred             EccC--cccCCCc-hhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCC
Q 041970          189 LNPG--LAFGTGE-HATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGP  247 (327)
Q Consensus       189 idPG--~AFGTG~-H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~  247 (327)
                      .+|.  -.|++|. +|-+..++--|.+. ++|+.|||==|                  .|||..+++-|+.|.+.-+++.
T Consensus       168 r~~~kRPf~~p~s~~P~lAR~mVNLa~v-~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~  246 (347)
T COG1041         168 RDPEKRPFFRPGSMDPRLARAMVNLARV-KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED  246 (347)
T ss_pred             cCcccCCccCcCCcCHHHHHHHHHHhcc-ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc
Confidence            4443  3577776 88888888888764 78999999655                  9999999999999999999862


Q ss_pred             CcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhccCCC
Q 041970          248 KKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSYAKPG  315 (327)
Q Consensus       248 ~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~LkpG  315 (327)
                        +.+.. ..|+.         .+          ++. ...+|.|+..+..            ..+.+.+..+.+.|++|
T Consensus       247 --~~~~~-~~Da~---------~l----------pl~-~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~g  303 (347)
T COG1041         247 --YPVLK-VLDAT---------NL----------PLR-DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPG  303 (347)
T ss_pred             --eeEEE-ecccc---------cC----------CCC-CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcC
Confidence              43331 12331         11          121 2359999999753            34667788899999999


Q ss_pred             cEEEEee
Q 041970          316 AVVGISG  322 (327)
Q Consensus       316 G~LIlSG  322 (327)
                      |++++..
T Consensus       304 G~~vf~~  310 (347)
T COG1041         304 GRIVFAA  310 (347)
T ss_pred             cEEEEec
Confidence            9988754

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.05  E-value=0.031  Score=53.11  Aligned_cols=40  Identities=28%  Similarity=0.476  Sum_probs=33.3

Q ss_pred             CCeeEEEEcCChH-------HHHHHHHHHhhccCCCcEEEEeeccCC
Q 041970          287 EEYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISGILSE  326 (327)
Q Consensus       287 ~~fDlVvANIla~-------vL~~L~p~i~~~LkpGG~LIlSGIl~~  326 (327)
                      ++||+|++-...+       .....+..+.++|||||.||+.|++..
T Consensus       157 ~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~  203 (256)
T PF01234_consen  157 PKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS  203 (256)
T ss_dssp             SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred             cchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc
Confidence            4699999987653       456788899999999999999999864

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK00536 speE spermidine synthase; Provisional

Probab=95.99  E-value=0.033  Score=53.11  Aligned_cols=68  Identities=15%  Similarity=0.132  Sum_probs=47.0

Q ss_pred             ecCCHHHHHHHHHHHHh--cCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHH
Q 041970          226 VDIDPQVIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQ  303 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~l--Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~  303 (327)
                      ||||+..|+.+++-.-.  .+.++.|+++..   ..            .         . ...++||+|+...+..  ..
T Consensus       100 VeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~---~~------------~---------~-~~~~~fDVIIvDs~~~--~~  152 (262)
T PRK00536        100 VQADEKILDSFISFFPHFHEVKNNKNFTHAK---QL------------L---------D-LDIKKYDLIICLQEPD--IH  152 (262)
T ss_pred             EECCHHHHHHHHHHCHHHHHhhcCCCEEEee---hh------------h---------h-ccCCcCCEEEEcCCCC--hH
Confidence            99999999999993221  135556777752   11            0         0 0136899999996543  34


Q ss_pred             HHHHHhhccCCCcEEEE
Q 041970          304 LADHIVSYAKPGAVVGI  320 (327)
Q Consensus       304 L~p~i~~~LkpGG~LIl  320 (327)
                      ....+.+.|+|||.++.
T Consensus       153 fy~~~~~~L~~~Gi~v~  169 (262)
T PRK00536        153 KIDGLKRMLKEDGVFIS  169 (262)
T ss_pred             HHHHHHHhcCCCcEEEE
Confidence            55778999999999886

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=95.93  E-value=0.041  Score=54.29  Aligned_cols=67  Identities=19%  Similarity=0.224  Sum_probs=43.4

Q ss_pred             ceeEEEccCcccCCCchhhHHHHHHHHHhhhcC-CCeeeeeee------------------ecCCHHHHHHHHHHHHhcC
Q 041970          184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIKG-GELFLDYGT------------------VDIDPQVIKSAHQNAALNN  244 (327)
Q Consensus       184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~-g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNg  244 (327)
                      ...+.+.|+-.|=. ...-+.-.++++.+++.. +.+|||+-|                  ||+++.||+.|++|+++|+
T Consensus       164 ~~~~~~~~~sFfQv-N~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~  242 (352)
T PF05958_consen  164 GLSFRISPGSFFQV-NPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNG  242 (352)
T ss_dssp             TEEEEEETTS---S-BHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCccC-cHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcC
Confidence            35677888876655 344444455555555432 348999999                  9999999999999999999


Q ss_pred             CCCCcEEEE
Q 041970          245 IGPKKMKLH  253 (327)
Q Consensus       245 v~~~~v~v~  253 (327)
                      +.  ++++.
T Consensus       243 i~--n~~f~  249 (352)
T PF05958_consen  243 ID--NVEFI  249 (352)
T ss_dssp             ----SEEEE
T ss_pred             CC--cceEE
Confidence            96  46664

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=95.81  E-value=0.017  Score=54.52  Aligned_cols=75  Identities=12%  Similarity=0.204  Sum_probs=50.8

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEc-----CChHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIAN-----ILLNP  300 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvAN-----Ila~v  300 (327)
                      +|.+|.||+..++|...+.   .++...  ..|+.     +  +++.        ... ..+.+|+|++-     |..+-
T Consensus       103 cDfsp~Ai~~vk~~~~~~e---~~~~af--v~Dlt-----~--~~~~--------~~~-~~~svD~it~IFvLSAi~pek  161 (264)
T KOG2361|consen  103 CDFSPRAIELVKKSSGYDE---SRVEAF--VWDLT-----S--PSLK--------EPP-EEGSVDIITLIFVLSAIHPEK  161 (264)
T ss_pred             cCCChHHHHHHHhccccch---hhhccc--ceecc-----c--hhcc--------CCC-CcCccceEEEEEEEeccChHH
Confidence            8999999999999987664   222221  12331     0  1111        112 36789988765     44566


Q ss_pred             HHHHHHHHhhccCCCcEEEEe
Q 041970          301 LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       301 L~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ....++.+.++|||||.|++.
T Consensus       162 ~~~a~~nl~~llKPGG~llfr  182 (264)
T KOG2361|consen  162 MQSVIKNLRTLLKPGGSLLFR  182 (264)
T ss_pred             HHHHHHHHHHHhCCCcEEEEe
Confidence            777899999999999999986

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.76  E-value=0.019  Score=54.12  Aligned_cols=66  Identities=27%  Similarity=0.440  Sum_probs=46.5

Q ss_pred             CCeeeeeee--------------------ecCCHHHHHHHHHHHHhc-CCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          217 GELFLDYGT--------------------VDIDPQVIKSAHQNAALN-NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       217 g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN-gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      +-++||||+                    .|||+.++..|+.|+..| +++ ..+++.. +.|-         +.+.   
T Consensus        79 ~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~-~~I~lr~-qk~~---------~~if---  144 (292)
T COG3129          79 NIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE-RAIRLRR-QKDS---------DAIF---  144 (292)
T ss_pred             ceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh-hheeEEe-ccCc---------cccc---
Confidence            448999998                    999999999999999999 776 4566653 2221         0010   


Q ss_pred             ccccccCC-CCCCCeeEEEEcCChHHH
Q 041970          276 SSHKIRGI-SETEEYDVVIANILLNPL  301 (327)
Q Consensus       276 ~~~~~~~~-~~~~~fDlVvANIla~vL  301 (327)
                           ..+ ...+.||.++||+..+--
T Consensus       145 -----~giig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         145 -----NGIIGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             -----cccccccceeeeEecCCCcchh
Confidence                 111 126899999999986543

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=95.59  E-value=0.037  Score=51.96  Aligned_cols=115  Identities=16%  Similarity=0.223  Sum_probs=69.9

Q ss_pred             EEEccCcccCCCc-hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcC-
Q 041970          187 IILNPGLAFGTGE-HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNN-  244 (327)
Q Consensus       187 I~idPG~AFGTG~-H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNg-  244 (327)
                      +.||-.+-+.+-. +.-+++....-.-.....++||=+|-                    |||||..++.|++-..... 
T Consensus        46 l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~  125 (246)
T PF01564_consen   46 LVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE  125 (246)
T ss_dssp             EEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT
T ss_pred             EEECCeEEEEEechHHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc
Confidence            3355555444333 44444444333222334678888886                    9999999999999766532 


Q ss_pred             -CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCC-CeeEEEEcCChH-------HHHHHHHHHhhccCCC
Q 041970          245 -IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETE-EYDVVIANILLN-------PLLQLADHIVSYAKPG  315 (327)
Q Consensus       245 -v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~-~fDlVvANIla~-------vL~~L~p~i~~~LkpG  315 (327)
                       ....|++++.  +|..         ..++        ..  .+ +||+|+..+...       .-.+....+.++|+||
T Consensus       126 ~~~d~r~~i~~--~Dg~---------~~l~--------~~--~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~  184 (246)
T PF01564_consen  126 GLDDPRVRIII--GDGR---------KFLK--------ET--QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD  184 (246)
T ss_dssp             TGGSTTEEEEE--STHH---------HHHH--------TS--SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE
T ss_pred             ccCCCceEEEE--hhhH---------HHHH--------hc--cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC
Confidence             3346788763  4531         1221        11  33 899999987641       1256778899999999


Q ss_pred             cEEEEee
Q 041970          316 AVVGISG  322 (327)
Q Consensus       316 G~LIlSG  322 (327)
                      |.+++-.
T Consensus       185 Gv~v~~~  191 (246)
T PF01564_consen  185 GVLVLQA  191 (246)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEc
Confidence            9998743

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=95.54  E-value=0.034  Score=54.97  Aligned_cols=79  Identities=23%  Similarity=0.364  Sum_probs=56.4

Q ss_pred             CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .|+.||||||                   |+-+.. .+.|+.-++-|.+. +||.|.  +|..         +       
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~M-AqyA~~Lv~~N~~~-~rItVI--~GKi---------E-------  236 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEM-AQYARKLVASNNLA-DRITVI--PGKI---------E-------  236 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHH-HHHHHHHHhcCCcc-ceEEEc--cCcc---------c-------
Confidence            4678999999                   776555 48899999999887 788864  4543         2       


Q ss_pred             cccccCCCCCCCeeEEEEcCChHHH--HHHHH---HHhhccCCCcEEE
Q 041970          277 SHKIRGISETEEYDVVIANILLNPL--LQLAD---HIVSYAKPGAVVG  319 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~vL--~~L~p---~i~~~LkpGG~LI  319 (327)
                           .++..++.|+|++-+..-.|  ++|+.   ..+++|+|.|..+
T Consensus       237 -----dieLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  237 -----DIELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             -----cccCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence                 23347899999998765333  23433   3568999999754

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=95.48  E-value=0.042  Score=47.79  Aligned_cols=75  Identities=20%  Similarity=0.317  Sum_probs=50.3

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC--------
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL--------  297 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl--------  297 (327)
                      +||.++|++.+++..+.+++. +++++..  ..-         ..+.        ..+ +.++.|+++-|+=        
T Consensus         5 FDIQ~~Ai~~T~~rL~~~~~~-~~v~li~--~sH---------e~l~--------~~i-~~~~v~~~iFNLGYLPggDk~   63 (140)
T PF06962_consen    5 FDIQEEAIENTRERLEEAGLE-DRVTLIL--DSH---------ENLD--------EYI-PEGPVDAAIFNLGYLPGGDKS   63 (140)
T ss_dssp             EES-HHHHHHHHHHHHHTT-G-SGEEEEE--S-G---------GGGG--------GT---S--EEEEEEEESB-CTS-TT
T ss_pred             EECHHHHHHHHHHHHHhcCCC-CcEEEEE--CCH---------HHHH--------hhC-ccCCcCEEEEECCcCCCCCCC
Confidence            799999999999999999987 6888763  111         1111        112 1258999999962        


Q ss_pred             ----hHHHHHHHHHHhhccCCCcEEEEe
Q 041970          298 ----LNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       298 ----a~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                          ++.-...+..+.++|+|||.+++-
T Consensus        64 i~T~~~TTl~Al~~al~lL~~gG~i~iv   91 (140)
T PF06962_consen   64 ITTKPETTLKALEAALELLKPGGIITIV   91 (140)
T ss_dssp             SB--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcCcHHHHHHHHHHHHhhccCCEEEEE
Confidence                244455677888999999998764

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=94.90  E-value=0.093  Score=50.23  Aligned_cols=35  Identities=17%  Similarity=0.392  Sum_probs=29.1

Q ss_pred             CCCeeEEEE-cCC----hHHHHHHHHHHhhccCCCcEEEE
Q 041970          286 TEEYDVVIA-NIL----LNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       286 ~~~fDlVvA-NIl----a~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      .++||+|+| |.+    ...-.+++..++..|+|||+|++
T Consensus       200 ~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl  239 (268)
T COG1352         200 LGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL  239 (268)
T ss_pred             cCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence            567999999 754    35566799999999999999876

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=94.82  E-value=0.18  Score=52.25  Aligned_cols=67  Identities=22%  Similarity=0.387  Sum_probs=51.9

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHHHhh--hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcC
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLLRSL--IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNN  244 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~--~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNg  244 (327)
                      ..+.|.||-.|=|-+|..- ..-..+.+.  +..++.++|+-|                  |+++|+||+-|++||+.||
T Consensus       351 ltF~iSp~AFFQ~Nt~~ae-vLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ng  429 (534)
T KOG2187|consen  351 LTFRISPGAFFQTNTSAAE-VLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQING  429 (534)
T ss_pred             eEEEECCchhhccCcHHHH-HHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcC
Confidence            4588999999999988542 222333333  346689999999                  9999999999999999999


Q ss_pred             CCCCcEEEEe
Q 041970          245 IGPKKMKLHL  254 (327)
Q Consensus       245 v~~~~v~v~~  254 (327)
                      +++  .++++
T Consensus       430 isN--a~Fi~  437 (534)
T KOG2187|consen  430 ISN--ATFIV  437 (534)
T ss_pred             ccc--eeeee
Confidence            974  56654

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=94.48  E-value=0.026  Score=50.26  Aligned_cols=31  Identities=23%  Similarity=0.445  Sum_probs=24.9

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      ||+||.-++.|+.|++.-|+. +++++.  .+|.
T Consensus        27 idid~~~~~~a~hNa~vYGv~-~~I~~i--~gD~   57 (163)
T PF09445_consen   27 IDIDPERLECAKHNAEVYGVA-DNIDFI--CGDF   57 (163)
T ss_dssp             EES-HHHHHHHHHHHHHTT-G-GGEEEE--ES-H
T ss_pred             EECCHHHHHHHHHHHHHcCCC-CcEEEE--eCCH
Confidence            999999999999999999997 788875  5665

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=94.36  E-value=0.089  Score=50.68  Aligned_cols=95  Identities=20%  Similarity=0.282  Sum_probs=61.9

Q ss_pred             CCCchhhHHHHHHHHH--hhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcC--CCCCcEEEEecCCCCCCCCccccccch
Q 041970          196 GTGEHATTKLCLLLLR--SLIKGGELFLDYGTVDIDPQVIKSAHQNAALNN--IGPKKMKLHLVPDRTFPSSMNERVDGI  271 (327)
Q Consensus       196 GTG~H~TT~lcLe~Le--~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNg--v~~~~v~v~~~~~d~~~~~~~g~~~~l  271 (327)
                      |.|.=.|+|-|++...  +..-          |||||..|+.||+-...-.  ....|+++.+  +|..         +.
T Consensus        84 GgGdG~tlRevlkh~~ve~i~~----------VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i--~Dg~---------~~  142 (282)
T COG0421          84 GGGDGGTLREVLKHLPVERITM----------VEIDPAVIELARKYLPEPSGGADDPRVEIII--DDGV---------EF  142 (282)
T ss_pred             CCCccHHHHHHHhcCCcceEEE----------EEcCHHHHHHHHHhccCcccccCCCceEEEe--ccHH---------HH
Confidence            3444578888888763  2111          8999999999998654322  2235777753  4431         22


Q ss_pred             hhhcccccccCCCCCCCeeEEEEcCChH--H-----HHHHHHHHhhccCCCcEEEEe
Q 041970          272 VEYLSSHKIRGISETEEYDVVIANILLN--P-----LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       272 ~~~~~~~~~~~~~~~~~fDlVvANIla~--v-----L~~L~p~i~~~LkpGG~LIlS  321 (327)
                      +.        ..  ..+||+|+.+-.-.  +     -......+.+.|+++|+++.-
T Consensus       143 v~--------~~--~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         143 LR--------DC--EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             HH--------hC--CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            21        11  34899999986532  2     246778899999999998764

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=94.33  E-value=0.019  Score=54.20  Aligned_cols=87  Identities=23%  Similarity=0.324  Sum_probs=59.1

Q ss_pred             hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          214 IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       214 ~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .+.|.+|||.++                   |+.||..++.|.-|=--.++...++++  ..||+.         ++++ 
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~i--ilGD~~---------e~V~-  199 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKI--ILGDAY---------EVVK-  199 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEE--ecccHH---------HHHh-
Confidence            456999999988                   899999998876663333332223444  356652         2321 


Q ss_pred             cccccccCCCCCCCeeEEEEcCC----hHHH--HHHHHHHhhccCCCcEEEE
Q 041970          275 LSSHKIRGISETEEYDVVIANIL----LNPL--LQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIl----a~vL--~~L~p~i~~~LkpGG~LIl  320 (327)
                             .+ .++.||+|+-.+.    |..|  .++-.++.+.|||||+++-
T Consensus       200 -------~~-~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH  243 (287)
T COG2521         200 -------DF-DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH  243 (287)
T ss_pred             -------cC-CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence                   23 3678999999985    3333  4577899999999999863

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=94.27  E-value=0.33  Score=44.56  Aligned_cols=88  Identities=23%  Similarity=0.302  Sum_probs=45.5

Q ss_pred             hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHH-------hcCCCCCcEEEEecCCCCCCCCccc
Q 041970          214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAA-------LNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~-------lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      +++++.++|+||                    |++.+...+.|+++.+       ..|....++.+  ..+|.+    +.
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l--~~gdfl----~~  113 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL--IHGDFL----DP  113 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE--ECS-TT----TH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee--eccCcc----cc
Confidence            567889999999                    9999999988876543       23443344554  367753    10


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEEEcCCh--HHHHHHHHHHhhccCCCcEEEE
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVIANILL--NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                         +..+        .+  -...|+|++|-..  +.+..-+..+...||+|.++|.
T Consensus       114 ---~~~~--------~~--~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  114 ---DFVK--------DI--WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             ---HHHH--------HH--GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             ---HhHh--------hh--hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence               1100        00  1357999998542  3444444566677899887764

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=94.25  E-value=0.081  Score=47.96  Aligned_cols=103  Identities=16%  Similarity=0.233  Sum_probs=63.2

Q ss_pred             eEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970          186 NIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN  265 (327)
Q Consensus       186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~  265 (327)
                      .|.||-|  ||.|.|-..     +..+  .++..+|-   +|+....+..|...+...++.  ++.+.  .+|+.     
T Consensus        19 ~l~lEIG--~G~G~~l~~-----~A~~--~Pd~n~iG---iE~~~~~v~~a~~~~~~~~l~--Nv~~~--~~da~-----   77 (195)
T PF02390_consen   19 PLILEIG--CGKGEFLIE-----LAKR--NPDINFIG---IEIRKKRVAKALRKAEKRGLK--NVRFL--RGDAR-----   77 (195)
T ss_dssp             EEEEEET---TTSHHHHH-----HHHH--STTSEEEE---EES-HHHHHHHHHHHHHHTTS--SEEEE--ES-CT-----
T ss_pred             CeEEEec--CCCCHHHHH-----HHHH--CCCCCEEE---EecchHHHHHHHHHHHhhccc--ceEEE--EccHH-----
Confidence            3667766  677766322     1111  23333322   799999999999999999886  46653  45542     


Q ss_pred             ccccchhhhcccccccCCCCCCCeeEEEEcCChH-----------HHHHHHHHHhhccCCCcEEEEe
Q 041970          266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----------PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----------vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                          .++.        .+.+++..|-|.-|..-.           +-..++..+++.|+|||.+.+.
T Consensus        78 ----~~l~--------~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~  132 (195)
T PF02390_consen   78 ----ELLR--------RLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA  132 (195)
T ss_dssp             ----THHH--------HHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----HHHh--------hcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence                1111        112357899999997521           2246888999999999998763

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=94.22  E-value=0.28  Score=47.29  Aligned_cols=94  Identities=17%  Similarity=0.138  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      -.|.+.+|+  +++|.+||+-||                     +|++..-.+.|++-.+..+++ +.+.+.  .-|.+ 
T Consensus        94 ia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~-~~vt~~--hrDVc-  167 (314)
T KOG2915|consen   94 IAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG-DNVTVT--HRDVC-  167 (314)
T ss_pred             HHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC-cceEEE--Eeecc-
Confidence            357777777  789999999999                     899999999999999999997 667764  34443 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                        ..|.              .+ ....+|.|+-.+++.-.  .+|.+++.||.+|.-++|
T Consensus       168 --~~GF--------------~~-ks~~aDaVFLDlPaPw~--AiPha~~~lk~~g~r~cs  208 (314)
T KOG2915|consen  168 --GSGF--------------LI-KSLKADAVFLDLPAPWE--AIPHAAKILKDEGGRLCS  208 (314)
T ss_pred             --cCCc--------------cc-cccccceEEEcCCChhh--hhhhhHHHhhhcCceEEe
Confidence              1111              11 25689999999887653  468888899988854443

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=93.78  E-value=0.28  Score=46.98  Aligned_cols=96  Identities=20%  Similarity=0.228  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970          202 TTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       202 TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~  260 (327)
                      ..+++...|.  ..+|++|||+.+                     .|+++.-++..++|+++-|+.  .+.+..  .|. 
T Consensus        73 sS~l~~~~L~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~--~v~~~~--~D~-  145 (283)
T PF01189_consen   73 SSQLVALALD--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF--NVIVIN--ADA-  145 (283)
T ss_dssp             HHHHHHHHHT--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S--SEEEEE--SHH-
T ss_pred             cccccccccc--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc--eEEEEe--ecc-
Confidence            3556666664  567889999988                     999999999999999999986  354431  232 


Q ss_pred             CCCccccccchhhhcccccccCCCCCCCeeEEEEcCC-------------------------hHHHHHHHHHHhhcc---
Q 041970          261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL-------------------------LNPLLQLADHIVSYA---  312 (327)
Q Consensus       261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl-------------------------a~vL~~L~p~i~~~L---  312 (327)
                              ....         .......||.|+....                         +..-.+++....+++   
T Consensus       146 --------~~~~---------~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~  208 (283)
T PF01189_consen  146 --------RKLD---------PKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNID  208 (283)
T ss_dssp             --------HHHH---------HHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHH
T ss_pred             --------cccc---------ccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhccc
Confidence                    0110         0001346999999853                         133456788899999   


Q ss_pred             -CCCcEEEEe
Q 041970          313 -KPGAVVGIS  321 (327)
Q Consensus       313 -kpGG~LIlS  321 (327)
                       ||||+++.|
T Consensus       209 ~k~gG~lvYs  218 (283)
T PF01189_consen  209 FKPGGRLVYS  218 (283)
T ss_dssp             BEEEEEEEEE
T ss_pred             ccCCCeEEEE
Confidence             999999987

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=93.71  E-value=0.18  Score=45.49  Aligned_cols=69  Identities=17%  Similarity=0.163  Sum_probs=44.5

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA  305 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~  305 (327)
                      +|-...=+..-++=++.=|++  ++++..  +..         ++            .....+||+|+|=-++. +..++
T Consensus        78 vEs~~KK~~FL~~~~~~L~L~--nv~v~~--~R~---------E~------------~~~~~~fd~v~aRAv~~-l~~l~  131 (184)
T PF02527_consen   78 VESVGKKVAFLKEVVRELGLS--NVEVIN--GRA---------EE------------PEYRESFDVVTARAVAP-LDKLL  131 (184)
T ss_dssp             EESSHHHHHHHHHHHHHHT-S--SEEEEE--S-H---------HH------------TTTTT-EEEEEEESSSS-HHHHH
T ss_pred             EeCCchHHHHHHHHHHHhCCC--CEEEEE--eee---------cc------------cccCCCccEEEeehhcC-HHHHH
Confidence            887777666666655555664  366542  222         21            01267899999998864 44677


Q ss_pred             HHHhhccCCCcEEEE
Q 041970          306 DHIVSYAKPGAVVGI  320 (327)
Q Consensus       306 p~i~~~LkpGG~LIl  320 (327)
                      +-...++++||++++
T Consensus       132 ~~~~~~l~~~G~~l~  146 (184)
T PF02527_consen  132 ELARPLLKPGGRLLA  146 (184)
T ss_dssp             HHHGGGEEEEEEEEE
T ss_pred             HHHHHhcCCCCEEEE
Confidence            888999999998765

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=93.66  E-value=0.21  Score=47.68  Aligned_cols=38  Identities=29%  Similarity=0.414  Sum_probs=29.8

Q ss_pred             CCCeeEEEE-cCCh---HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          286 TEEYDVVIA-NILL---NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       286 ~~~fDlVvA-NIla---~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      +.+||+|.| |.+-   .| ..|+.++.+.|+|+|++|++=.|
T Consensus       149 ~~~fDvIscLNvLDRc~~P-~~LL~~i~~~l~p~G~lilAvVl  190 (265)
T PF05219_consen  149 DFKFDVISCLNVLDRCDRP-LTLLRDIRRALKPNGRLILAVVL  190 (265)
T ss_pred             CCceEEEeehhhhhccCCH-HHHHHHHHHHhCCCCEEEEEEEe
Confidence            468999998 6653   33 34788999999999999998554

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=93.61  E-value=0.055  Score=50.30  Aligned_cols=33  Identities=21%  Similarity=0.494  Sum_probs=25.2

Q ss_pred             CCCCeeEEEEcC----ChHHHH--HHHHHHhhccCCCcE
Q 041970          285 ETEEYDVVIANI----LLNPLL--QLADHIVSYAKPGAV  317 (327)
Q Consensus       285 ~~~~fDlVvANI----la~vL~--~L~p~i~~~LkpGG~  317 (327)
                      +.++||+|+.-+    +..+-.  +|+..+.++|+|+|.
T Consensus       101 ~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen  101 ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence            367899997654    444443  588999999999999

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=93.08  E-value=0.33  Score=48.60  Aligned_cols=74  Identities=19%  Similarity=0.365  Sum_probs=48.0

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA  305 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~  305 (327)
                      -|+||.|++..++|+++|+++.+++++.  ..|+         ..++          ......||+|=-.+...+.. ++
T Consensus        80 NDi~~~a~~~i~~N~~~N~~~~~~~~v~--~~DA---------n~ll----------~~~~~~fD~IDlDPfGSp~p-fl  137 (377)
T PF02005_consen   80 NDISPEAVELIKRNLELNGLEDERIEVS--NMDA---------NVLL----------YSRQERFDVIDLDPFGSPAP-FL  137 (377)
T ss_dssp             EES-HHHHHHHHHHHHHCT-SGCCEEEE--ES-H---------HHHH----------CHSTT-EEEEEE--SS--HH-HH
T ss_pred             ecCCHHHHHHHHHhHhhccccCceEEEe--hhhH---------HHHh----------hhccccCCEEEeCCCCCccH-hH
Confidence            7999999999999999999985467764  3443         1111          01267899998887755543 56


Q ss_pred             HHHhhccCCCcEEEEe
Q 041970          306 DHIVSYAKPGAVVGIS  321 (327)
Q Consensus       306 p~i~~~LkpGG~LIlS  321 (327)
                      +...+.++.||.|.+.
T Consensus       138 dsA~~~v~~gGll~vT  153 (377)
T PF02005_consen  138 DSALQAVKDGGLLCVT  153 (377)
T ss_dssp             HHHHHHEEEEEEEEEE
T ss_pred             HHHHHHhhcCCEEEEe
Confidence            6777789999988764

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=91.90  E-value=0.54  Score=47.24  Aligned_cols=114  Identities=24%  Similarity=0.421  Sum_probs=70.5

Q ss_pred             CceeEEEccCcccCCCc----hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHH
Q 041970          183 QATNIILNPGLAFGTGE----HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQ  238 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~----H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~e  238 (327)
                      +...++||-|+-|.|-.    ||+  +..-.+. .+++-.+||=+|-                    ||.||.+++.|+.
T Consensus       255 ~d~rLYldG~LQfsTrDe~RYhEs--LV~pals-~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~  331 (508)
T COG4262         255 DDLRLYLDGGLQFSTRDEYRYHES--LVYPALS-SVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASH  331 (508)
T ss_pred             CceEEEEcCceeeeechhhhhhhe--eeecccc-cccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhh
Confidence            34679999999999853    322  1111111 1233467888887                    9999999999998


Q ss_pred             HHH---hcC--CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------HHH-HHHH
Q 041970          239 NAA---LNN--IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------NPL-LQLA  305 (327)
Q Consensus       239 Na~---lNg--v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------~vL-~~L~  305 (327)
                      |..   .|+  .++-|+.+  +..|++     .+    +        +.  ....||.|+-...-       ... .++-
T Consensus       332 ~~vlr~~N~~sf~dpRv~V--v~dDAf-----~w----l--------r~--a~~~fD~vIVDl~DP~tps~~rlYS~eFY  390 (508)
T COG4262         332 ATVLRALNQGSFSDPRVTV--VNDDAF-----QW----L--------RT--AADMFDVVIVDLPDPSTPSIGRLYSVEFY  390 (508)
T ss_pred             hhHhhhhccCCccCCeeEE--EeccHH-----HH----H--------Hh--hcccccEEEEeCCCCCCcchhhhhhHHHH
Confidence            754   343  33345554  345543     11    1        11  24589999988642       111 2344


Q ss_pred             HHHhhccCCCcEEEE
Q 041970          306 DHIVSYAKPGAVVGI  320 (327)
Q Consensus       306 p~i~~~LkpGG~LIl  320 (327)
                      ..+.++|+++|.++.
T Consensus       391 ~ll~~~l~e~Gl~Vv  405 (508)
T COG4262         391 RLLSRHLAETGLMVV  405 (508)
T ss_pred             HHHHHhcCcCceEEE
Confidence            567899999999876

>TIGR00478 tly hemolysin TlyA family protein

Probab=91.71  E-value=0.16  Score=47.37  Aligned_cols=27  Identities=11%  Similarity=0.317  Sum_probs=18.4

Q ss_pred             CeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          288 EYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       288 ~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      .+|++++-.     ..++|.+.+.|+| |.+++
T Consensus       143 ~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       143 TFDVSFISL-----ISILPELDLLLNP-NDLTL  169 (228)
T ss_pred             eeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence            577666433     2368899999999 76653

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=91.58  E-value=0.54  Score=45.09  Aligned_cols=96  Identities=21%  Similarity=0.230  Sum_probs=52.7

Q ss_pred             Ceeeeeee-----------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          218 ELFLDYGT-----------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       218 ~~VLDvGc-----------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      ...||+||                       ||+||.++..++.-+..|.-  .+..+  +.+|+.      .-+++++.
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--g~t~~--v~aD~r------~p~~iL~~  139 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--GRTAY--VQADLR------DPEAILAH  139 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--SEEEE--EE--TT-------HHHHHCS
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--ccEEE--EeCCCC------CHHHHhcC
Confidence            58999999                       99999999999988777642  12333  356652      11122210


Q ss_pred             cccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeeccC
Q 041970          275 LSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                      ..+.  ..+..+++.=+++..++.     +-...++..+...|.||.+|++|=+..
T Consensus       140 p~~~--~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~  193 (267)
T PF04672_consen  140 PEVR--GLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD  193 (267)
T ss_dssp             HHHH--CC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred             HHHH--hcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence            0000  012225566677766653     234678899999999999999986543

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=91.15  E-value=0.27  Score=45.28  Aligned_cols=92  Identities=16%  Similarity=0.253  Sum_probs=59.8

Q ss_pred             hhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          200 HATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       200 H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      |+--...-+++++...  +.+.|+|+                  ++.||.-.+.|.||...||..  .+++  +.||+. 
T Consensus        18 ~eRlavF~~ai~~va~--d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~--n~ev--v~gDA~-   90 (252)
T COG4076          18 VERLAVFTSAIAEVAE--DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDV--NWEV--VVGDAR-   90 (252)
T ss_pred             HHHHHHHHHHHHHHhh--hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCc--ceEE--Eecccc-
Confidence            4433444445555433  57777777                  899999999999999999974  4665  357752 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHH-----HHHHHHHhhccCCCcEEE
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL-----LQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL-----~~L~p~i~~~LkpGG~LI  319 (327)
                                          ... -+.+|+|+|-.+--.|     ...+..+.+.||-.+.+|
T Consensus        91 --------------------~y~-fe~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076          91 --------------------DYD-FENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             --------------------ccc-ccccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence                                121 3578999998764322     234445555677777654

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=90.84  E-value=0.22  Score=48.99  Aligned_cols=28  Identities=25%  Similarity=0.315  Sum_probs=24.5

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEe
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHL  254 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~  254 (327)
                      +|||...+..|++|+..|+++ +++.+..
T Consensus       132 teidd~s~~~a~snV~qn~ls-s~ikvV~  159 (419)
T KOG2912|consen  132 TEIDDMSFNYAKSNVEQNNLS-SLIKVVK  159 (419)
T ss_pred             eeccccccchhhccccccccc-cceeeEE
Confidence            899999999999999999998 6676643

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=90.62  E-value=0.3  Score=46.41  Aligned_cols=53  Identities=25%  Similarity=0.293  Sum_probs=36.2

Q ss_pred             chhhHHHHHHHHHhhh-------cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEE
Q 041970          199 EHATTKLCLLLLRSLI-------KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMK  251 (327)
Q Consensus       199 ~H~TT~lcLe~Le~~~-------~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~  251 (327)
                      .|.+|+-=|..|++..       ....+|+|+||                    +|||...++.-..=...-++. .++.
T Consensus        81 ~HaST~ERl~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~-~~~~  159 (251)
T PF07091_consen   81 GHASTRERLPNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP-HDAR  159 (251)
T ss_dssp             TSHHHHCCGGGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C-EEEE
T ss_pred             hccchhhhhhhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC-ccee
Confidence            4777776666666553       34579999999                    999999999998877777765 3344


Q ss_pred             E
Q 041970          252 L  252 (327)
Q Consensus       252 v  252 (327)
                      +
T Consensus       160 v  160 (251)
T PF07091_consen  160 V  160 (251)
T ss_dssp             E
T ss_pred             E
Confidence            3

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=90.58  E-value=2.6  Score=41.41  Aligned_cols=106  Identities=14%  Similarity=0.155  Sum_probs=62.8

Q ss_pred             cCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          195 FGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       195 FGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      +|.|.-.=|++.|+.|++.   ++ -.-+=.+||+..+++.|.+++..-..+  .+++.-..+|..        +.+ . 
T Consensus        83 LGsG~~~Kt~~LL~aL~~~---~~-~~~Y~plDIS~~~L~~a~~~L~~~~~p--~l~v~~l~gdy~--------~~l-~-  146 (319)
T TIGR03439        83 LGSGNLRKVGILLEALERQ---KK-SVDYYALDVSRSELQRTLAELPLGNFS--HVRCAGLLGTYD--------DGL-A-  146 (319)
T ss_pred             ECCCchHHHHHHHHHHHhc---CC-CceEEEEECCHHHHHHHHHhhhhccCC--CeEEEEEEecHH--------HHH-h-
Confidence            4555555589999998742   11 111112999999999999998744443  355543344431        110 0 


Q ss_pred             cccccccCCCCCCCeeEEE------EcCChHHHHHHHHHHhh-ccCCCcEEEE
Q 041970          275 LSSHKIRGISETEEYDVVI------ANILLNPLLQLADHIVS-YAKPGAVVGI  320 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVv------ANIla~vL~~L~p~i~~-~LkpGG~LIl  320 (327)
                        .......  .....+|+      .|....-...++..+++ .|+|||.|++
T Consensus       147 --~l~~~~~--~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       147 --WLKRPEN--RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             --hcccccc--cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence              0000000  12345553      56666677788899999 9999999876

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=90.47  E-value=0.5  Score=45.86  Aligned_cols=52  Identities=25%  Similarity=0.362  Sum_probs=31.0

Q ss_pred             EEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970          187 IILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLH  253 (327)
Q Consensus       187 I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~  253 (327)
                      +.||-+  ||+|.|  |...++.+    .+..+|+   ++|.||.|++.|+++++.   . +++.+.
T Consensus        22 ~vlD~T--lG~GGh--S~~il~~~----~~~g~Vi---giD~D~~al~~ak~~L~~---~-~ri~~i   73 (296)
T PRK00050         22 IYVDGT--FGGGGH--SRAILERL----GPKGRLI---AIDRDPDAIAAAKDRLKP---F-GRFTLV   73 (296)
T ss_pred             EEEEeC--cCChHH--HHHHHHhC----CCCCEEE---EEcCCHHHHHHHHHhhcc---C-CcEEEE
Confidence            455543  777777  33333332    1112222   189999999999998754   2 467764

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.29  E-value=0.84  Score=42.15  Aligned_cols=37  Identities=24%  Similarity=0.220  Sum_probs=24.8

Q ss_pred             CCCeeEEEEcCCh-------------HHHHHHHHH-HhhccCCCcEEEEee
Q 041970          286 TEEYDVVIANILL-------------NPLLQLADH-IVSYAKPGAVVGISG  322 (327)
Q Consensus       286 ~~~fDlVvANIla-------------~vL~~L~p~-i~~~LkpGG~LIlSG  322 (327)
                      ..++|+|++....             -.|...+.+ ....|+|||.+++.=
T Consensus       109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~  159 (205)
T COG0293         109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV  159 (205)
T ss_pred             CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence            4568999976543             223444444 456999999998763

>PRK04148 hypothetical protein; Provisional

Probab=89.87  E-value=0.54  Score=40.57  Aligned_cols=32  Identities=13%  Similarity=0.314  Sum_probs=23.9

Q ss_pred             HHHHhhhc--CCCeeeeeee-------------------ecCCHHHHHHHHHH
Q 041970          208 LLLRSLIK--GGELFLDYGT-------------------VDIDPQVIKSAHQN  239 (327)
Q Consensus       208 e~Le~~~~--~g~~VLDvGc-------------------VDIDp~AV~~A~eN  239 (327)
                      ++|.+++.  .+++||||||                   +|++|.+++.|++|
T Consensus         6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~   58 (134)
T PRK04148          6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL   58 (134)
T ss_pred             HHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence            44555442  3468999999                   99999998888776

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=89.69  E-value=4  Score=38.68  Aligned_cols=93  Identities=17%  Similarity=0.106  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHH-hhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970          201 ATTKLCLLLLR-SLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       201 ~TT~lcLe~Le-~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~  260 (327)
                      +||-.=..+|. +....|++||=+|=                   +|||...++.-++.++..|+.   ++.+  .-|+-
T Consensus        28 eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~---i~~~--~~DlR  102 (243)
T PF01861_consen   28 ETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP---IEAV--HYDLR  102 (243)
T ss_dssp             HHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE-----TT
T ss_pred             HHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc---eEEE--Eeccc
Confidence            33333333333 33346777887776                   999999999999999999985   4443  34541


Q ss_pred             CCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--HHHHHHHHHHhhccCCCc
Q 041970          261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--NPLLQLADHIVSYAKPGA  316 (327)
Q Consensus       261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~vL~~L~p~i~~~LkpGG  316 (327)
                              +.+.        ..  -.++||+++.+++-  +-+.-++..-...||..|
T Consensus       103 --------~~LP--------~~--~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g  142 (243)
T PF01861_consen  103 --------DPLP--------EE--LRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEG  142 (243)
T ss_dssp             --------S-----------TT--TSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred             --------ccCC--------HH--HhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence                    1111        01  15799999999864  334445555566667656

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=89.33  E-value=1.4  Score=41.23  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=67.4

Q ss_pred             eEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970          186 NIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN  265 (327)
Q Consensus       186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~  265 (327)
                      +|.|+=|  ||.|.|-+.     +    .+....+.=|| ||+-...|..|.+-+...++.  ++.+.  .+|+      
T Consensus        50 pi~lEIG--fG~G~~l~~-----~----A~~nP~~nfiG-iEi~~~~v~~~l~k~~~~~l~--Nlri~--~~DA------  107 (227)
T COG0220          50 PIVLEIG--FGMGEFLVE-----M----AKKNPEKNFLG-IEIRVPGVAKALKKIKELGLK--NLRLL--CGDA------  107 (227)
T ss_pred             cEEEEEC--CCCCHHHHH-----H----HHHCCCCCEEE-EEEehHHHHHHHHHHHHcCCC--cEEEE--cCCH------
Confidence            5777766  888887322     1    11122233333 899999999999999998884  35553  4564      


Q ss_pred             ccccchhhhcccccccCCCCCCCeeEEEEcCCh-----------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                         .++++        .+.+++..|-|.-|..-           -+-..++..+++.|+|||.|.+.
T Consensus       108 ---~~~l~--------~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         108 ---VEVLD--------YLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             ---HHHHH--------hcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence               12321        22335689999999751           12345788999999999998764

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=89.31  E-value=1.1  Score=42.66  Aligned_cols=49  Identities=14%  Similarity=0.183  Sum_probs=32.7

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCC--CeeEEEEcCChHHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETE--EYDVVIANILLNPL  301 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~--~fDlVvANIla~vL  301 (327)
                      |++|+..+..-++...    ..+++++.  .+|++.         +          .+  ..  +++.||||+..++-
T Consensus        58 iEiD~~l~~~L~~~~~----~~~n~~vi--~~DaLk---------~----------d~--~~l~~~~~vVaNlPY~Is  108 (259)
T COG0030          58 IEIDRRLAEVLKERFA----PYDNLTVI--NGDALK---------F----------DF--PSLAQPYKVVANLPYNIS  108 (259)
T ss_pred             EEeCHHHHHHHHHhcc----cccceEEE--eCchhc---------C----------cc--hhhcCCCEEEEcCCCccc
Confidence            8999999999888764    12456664  677641         0          11  22  68999999876443

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=89.09  E-value=0.57  Score=43.61  Aligned_cols=94  Identities=17%  Similarity=0.222  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhhhcC-------CCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecC
Q 041970          203 TKLCLLLLRSLIKG-------GELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVP  256 (327)
Q Consensus       203 T~lcLe~Le~~~~~-------g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~  256 (327)
                      -+.--.+|.++...       -.+.||.|+                   ||-.+.-++.|++....++-  ...++... 
T Consensus        35 i~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~--~v~~~~~~-  111 (218)
T PF05891_consen   35 IQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP--RVGEFYCV-  111 (218)
T ss_dssp             HHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC--CEEEEEES-
T ss_pred             HHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC--CcceEEec-
Confidence            34445566665432       258999999                   88899999999987544211  11223210 


Q ss_pred             CCCCCCCccccccchhhhcccccccCCCC-CCCeeEEEEcCC-----hHHHHHHHHHHhhccCCCcEEEEe
Q 041970          257 DRTFPSSMNERVDGIVEYLSSHKIRGISE-TEEYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       257 ~d~~~~~~~g~~~~l~~~~~~~~~~~~~~-~~~fDlVvANIl-----a~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                               |    +         +.+.+ ..+||+|-+.=.     -+-++.++......|+|||.+++-
T Consensus       112 ---------g----L---------Q~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen  112 ---------G----L---------QDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             --------------G---------GG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------C----H---------hhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence                     1    1         12222 468999998843     356788999999999999998874

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=88.30  E-value=0.87  Score=43.25  Aligned_cols=87  Identities=15%  Similarity=0.221  Sum_probs=51.2

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccc
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI  280 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~  280 (327)
                      .|+++..+.-++.+.          +|+++.+++.|++.-..+-.       +  .+..+  ..    ++..        
T Consensus        46 qa~~~iae~~k~VIa----------tD~s~~mL~~a~k~~~~~y~-------~--t~~~m--s~----~~~v--------   92 (261)
T KOG3010|consen   46 QAARGIAEHYKEVIA----------TDVSEAMLKVAKKHPPVTYC-------H--TPSTM--SS----DEMV--------   92 (261)
T ss_pred             cchHHHHHhhhhhee----------ecCCHHHHHHhhcCCCcccc-------c--CCccc--cc----cccc--------
Confidence            566666666555544          89999999998774321111       0  11111  00    1111        


Q ss_pred             cCCCCCCCeeEEEEcCCh--HHHHHHHHHHhhccCCCc-EEEE
Q 041970          281 RGISETEEYDVVIANILL--NPLLQLADHIVSYAKPGA-VVGI  320 (327)
Q Consensus       281 ~~~~~~~~fDlVvANIla--~vL~~L~p~i~~~LkpGG-~LIl  320 (327)
                      ..+...+..|+|+|-=..  --+.++.+.+.+.||+.| .+.+
T Consensus        93 ~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen   93 DLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             cccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence            012236789999975433  357889999999999888 4443

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=88.29  E-value=0.48  Score=39.62  Aligned_cols=33  Identities=24%  Similarity=0.475  Sum_probs=26.8

Q ss_pred             CeeEEEEcCCh---------HHHHHHHHHHhhccCCCcEEEE
Q 041970          288 EYDVVIANILL---------NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       288 ~fDlVvANIla---------~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      +||+|+|=-+.         +-|+.++..+...|+|||.||+
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil   42 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL   42 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence            49999997553         3467899999999999999987

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=87.84  E-value=0.54  Score=39.16  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=19.9

Q ss_pred             ecCCHHHHHHHHHHHHhcCCC
Q 041970          226 VDIDPQVIKSAHQNAALNNIG  246 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~  246 (327)
                      +|.+|.+.+.+++|++.|++.
T Consensus        28 ~E~~~~~~~~l~~~~~~n~~~   48 (143)
T TIGR01444        28 FEPLPDAYEILEENVKLNNLP   48 (143)
T ss_pred             EecCHHHHHHHHHHHHHcCCC
Confidence            999999999999999999875

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=87.59  E-value=0.91  Score=36.12  Aligned_cols=94  Identities=13%  Similarity=0.133  Sum_probs=39.0

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccc
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKI  280 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~  280 (327)
                      -+|...++.+++.-.     --+=|+|..+. .+.++++++..++. +++++.  .++.         .+.+.       
T Consensus         9 ~st~~l~~~~~~~~~-----~~~~~vD~~~~-~~~~~~~~~~~~~~-~~~~~~--~g~s---------~~~l~-------   63 (106)
T PF13578_consen    9 YSTLWLASALRDNGR-----GKLYSVDPFPG-DEQAQEIIKKAGLS-DRVEFI--QGDS---------PDFLP-------   63 (106)
T ss_dssp             -----------------------EEEESS-------------GGG--BTEEEE--ES-T---------HHHHH-------
T ss_pred             ccccccccccccccc-----CCEEEEECCCc-ccccchhhhhcCCC-CeEEEE--EcCc---------HHHHH-------
Confidence            566666666654311     11122888886 55666777666665 567764  4543         12221       


Q ss_pred             cCCCCCCCeeEEEEcCC--hHHHHHHHHHHhhccCCCcEEEEe
Q 041970          281 RGISETEEYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       281 ~~~~~~~~fDlVvANIl--a~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                       .+. .+++|+|+-.--  ......-+..+.++|+|||.+++-
T Consensus        64 -~~~-~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   64 -SLP-DGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             -HHH-H--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             -HcC-CCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence             111 368999998764  456666778889999999998874

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=86.65  E-value=0.66  Score=48.01  Aligned_cols=39  Identities=23%  Similarity=0.294  Sum_probs=27.8

Q ss_pred             CCCCeeEEEEc---CChHHH-HHHHHHHhhccCCCcEEEEeec
Q 041970          285 ETEEYDVVIAN---ILLNPL-LQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       285 ~~~~fDlVvAN---Ila~vL-~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      +...||+|-|-   |..... ..++-++-+.|+|||++++||=
T Consensus       178 p~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  178 PSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             CccchhhhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence            46789999653   222221 2356788999999999999984

; GO: 0008168 methyltransferase activity

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=86.13  E-value=1.6  Score=43.60  Aligned_cols=87  Identities=16%  Similarity=0.239  Sum_probs=58.6

Q ss_pred             hhcCCCeeee--eee----------------ecCCHHHHH-------HHHHHHHhcCCCCCcEEEEecCCCCCCCCcccc
Q 041970          213 LIKGGELFLD--YGT----------------VDIDPQVIK-------SAHQNAALNNIGPKKMKLHLVPDRTFPSSMNER  267 (327)
Q Consensus       213 ~~~~g~~VLD--vGc----------------VDIDp~AV~-------~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~  267 (327)
                      .+++|+-|+|  |||                .|||-..|+       ..+.|.+..|.+..-+.+.  .+|.        
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl--~~D~--------  274 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVL--TADF--------  274 (421)
T ss_pred             ccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhhee--eecc--------
Confidence            3678999999  777                899999998       4567888888764434432  1232        


Q ss_pred             ccchhhhcccccccCCCCCCCeeEEEEcCCh------------------------------------HHHHHHHHHHhhc
Q 041970          268 VDGIVEYLSSHKIRGISETEEYDVVIANILL------------------------------------NPLLQLADHIVSY  311 (327)
Q Consensus       268 ~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------------------------------~vL~~L~p~i~~~  311 (327)
                              +.+.   +.....||.|||.+..                                    ..+-.++.-.+++
T Consensus       275 --------sn~~---~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~  343 (421)
T KOG2671|consen  275 --------SNPP---LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRR  343 (421)
T ss_pred             --------cCcc---hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhh
Confidence                    1121   2226789999999863                                    2233456667788


Q ss_pred             cCCCcEEEE
Q 041970          312 AKPGAVVGI  320 (327)
Q Consensus       312 LkpGG~LIl  320 (327)
                      |..||+|++
T Consensus       344 L~~ggrlv~  352 (421)
T KOG2671|consen  344 LVDGGRLVF  352 (421)
T ss_pred             hhcCceEEE
Confidence            999999875

>KOG2730 consensus Methylase [General function prediction only]

Probab=84.76  E-value=0.44  Score=44.83  Aligned_cols=32  Identities=25%  Similarity=0.412  Sum_probs=28.2

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~  260 (327)
                      |||||.-+..|++|++..|++ +||++.  +||.+
T Consensus       122 IdiDPikIa~AkhNaeiYGI~-~rItFI--~GD~l  153 (263)
T KOG2730|consen  122 IDIDPVKIACARHNAEVYGVP-DRITFI--CGDFL  153 (263)
T ss_pred             EeccHHHHHHHhccceeecCC-ceeEEE--echHH
Confidence            899999999999999999998 688875  57753

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=84.52  E-value=8.5  Score=36.51  Aligned_cols=35  Identities=17%  Similarity=0.274  Sum_probs=30.4

Q ss_pred             CCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          286 TEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       286 ~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      .++.|++++..-.-.+..++|.+...++|+|.+++
T Consensus       142 ~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         142 TEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             ccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence            34789999998888889999999999999997764

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=84.00  E-value=2.4  Score=42.36  Aligned_cols=90  Identities=22%  Similarity=0.177  Sum_probs=54.4

Q ss_pred             HHHhhhcCCCeeeeeee-----------------ecCCHHHHHHHHHHHH--hcCCCCCcEEEEecCCCCCCCCcccccc
Q 041970          209 LLRSLIKGGELFLDYGT-----------------VDIDPQVIKSAHQNAA--LNNIGPKKMKLHLVPDRTFPSSMNERVD  269 (327)
Q Consensus       209 ~Le~~~~~g~~VLDvGc-----------------VDIDp~AV~~A~eNa~--lNgv~~~~v~v~~~~~d~~~~~~~g~~~  269 (327)
                      ++..-.+++..++|+||                 ++++-.+.+.++.|..  .-++. ++..+  ..++..         
T Consensus       103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~-~k~~~--~~~~~~---------  170 (364)
T KOG1269|consen  103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLD-NKCNF--VVADFG---------  170 (364)
T ss_pred             HHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhh-hhcce--ehhhhh---------
Confidence            34444567778999999                 6666666666665532  22333 22222  123331         


Q ss_pred             chhhhcccccccCCCCCCCeeEEEEcC---ChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          270 GIVEYLSSHKIRGISETEEYDVVIANI---LLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       270 ~l~~~~~~~~~~~~~~~~~fDlVvANI---la~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                                 ....++..||.|-++=   .+.-......++.+.++|||+++..
T Consensus       171 -----------~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  171 -----------KMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             -----------cCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence                       0112366788887763   3455566778888999999999864

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=83.94  E-value=0.58  Score=44.41  Aligned_cols=81  Identities=19%  Similarity=0.139  Sum_probs=53.2

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      +.-..++|+||                   +|.+-.+++.++. ++-|++..  ..+   .+|-          +.+   
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~-~qdp~i~~--~~~---v~DE----------E~L---  131 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPSIET--SYF---VGDE----------EFL---  131 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc-cCCCceEE--EEE---ecch----------hcc---
Confidence            44568899999                   9999999999875 34465541  111   1221          111   


Q ss_pred             ccccccCCCCCCCeeEEEEcCChHHHH---HHHHHHhhccCCCcEEEEe
Q 041970          276 SSHKIRGISETEEYDVVIANILLNPLL---QLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~vL~---~L~p~i~~~LkpGG~LIlS  321 (327)
                            ++ ...++|+|+.-+-++-.-   .-+-++...|||.|.||.|
T Consensus       132 ------df-~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  132 ------DF-KENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             ------cc-cccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence                  12 256899999887655433   3355788899999998865

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=83.85  E-value=3.3  Score=42.97  Aligned_cols=83  Identities=16%  Similarity=0.131  Sum_probs=58.7

Q ss_pred             CCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          217 GELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       217 g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      +..+|||||                    +|+....+..|...++..++.  ++.+.  .++.         ..+.    
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~--N~~~~--~~~~---------~~~~----  410 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT--NFLLF--PNNL---------DLIL----  410 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC--eEEEE--cCCH---------HHHH----
Confidence            458999999                    999999999998888888885  35543  3332         1111    


Q ss_pred             cccccCCCCCCCeeEEEEcCCh-----------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          277 SHKIRGISETEEYDVVIANILL-----------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla-----------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                          ..+ +..+.|-|.-|..-           -+-..++..+++.|+|||.+.+.
T Consensus       411 ----~~~-~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~  461 (506)
T PRK01544        411 ----NDL-PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA  461 (506)
T ss_pred             ----Hhc-CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence                012 35679999999752           12245778899999999988764

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=82.63  E-value=4  Score=37.96  Aligned_cols=29  Identities=28%  Similarity=0.336  Sum_probs=22.1

Q ss_pred             eeEEEEcCChHHHHHHHHHHhhccCCCcEE
Q 041970          289 YDVVIANILLNPLLQLADHIVSYAKPGAVV  318 (327)
Q Consensus       289 fDlVvANIla~vL~~L~p~i~~~LkpGG~L  318 (327)
                      ||+|+|=-++. +..++.-...++|+||.+
T Consensus       136 ~D~vtsRAva~-L~~l~e~~~pllk~~g~~  164 (215)
T COG0357         136 YDVVTSRAVAS-LNVLLELCLPLLKVGGGF  164 (215)
T ss_pred             CcEEEeehccc-hHHHHHHHHHhcccCCcc
Confidence            99999987754 344666777889998875

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=82.07  E-value=5.7  Score=39.89  Aligned_cols=68  Identities=13%  Similarity=0.067  Sum_probs=47.4

Q ss_pred             CHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--HHHHHHHH
Q 041970          229 DPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--NPLLQLAD  306 (327)
Q Consensus       229 Dp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~vL~~L~p  306 (327)
                      +-.+-..+++|+++||++.+.+++..    .        .+            .+  .+.+|+|+.=+..  ..+..++.
T Consensus        73 s~~~~~~~~~n~~~n~~~~~~~~~~~----~--------~~------------~~--~~~~d~vl~~~PK~~~~l~~~l~  126 (378)
T PRK15001         73 SYISELATRENLRLNGIDESSVKFLD----S--------TA------------DY--PQQPGVVLIKVPKTLALLEQQLR  126 (378)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceeec----c--------cc------------cc--cCCCCEEEEEeCCCHHHHHHHHH
Confidence            44555666899999999755555431    1        00            11  4569999988764  45667788


Q ss_pred             HHhhccCCCcEEEEee
Q 041970          307 HIVSYAKPGAVVGISG  322 (327)
Q Consensus       307 ~i~~~LkpGG~LIlSG  322 (327)
                      .+..++.||+.+|.-|
T Consensus       127 ~l~~~l~~~~~ii~g~  142 (378)
T PRK15001        127 ALRKVVTSDTRIIAGA  142 (378)
T ss_pred             HHHhhCCCCCEEEEEE
Confidence            9999999999987554

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=81.68  E-value=6.4  Score=40.24  Aligned_cols=87  Identities=18%  Similarity=0.131  Sum_probs=60.2

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      .++|.||||+.+                     -|....-++.-++|+.+-|+. +.+.+   ..|.       .  ++.
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~---n~D~-------~--ef~  305 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVS---NYDG-------R--EFP  305 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEE---ccCc-------c--ccc
Confidence            368899999988                     788889999999999999987 33322   2332       1  110


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCC-------------------------hHHHHHHHHHHhhccCCCcEEEEee
Q 041970          273 EYLSSHKIRGISETEEYDVVIANIL-------------------------LNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIl-------------------------a~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                              +... .++||-|+-.-.                         .+.-.+|+-.....+++||+|+.|-
T Consensus       306 --------~~~~-~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  306 --------EKEF-PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             --------cccc-CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence                    0111 237998886532                         1334578888999999999999884

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=80.13  E-value=6.6  Score=36.89  Aligned_cols=62  Identities=15%  Similarity=0.204  Sum_probs=36.5

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA  305 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~  305 (327)
                      +|+|+..++.-++....    ..++++.  .+|.+.  .     +..        ...  ..+..+||+|+...+-..++
T Consensus        58 vE~d~~~~~~L~~~~~~----~~~~~vi--~~D~l~--~-----~~~--------~~~--~~~~~~vv~NlPy~is~~il  114 (262)
T PF00398_consen   58 VEIDPDLAKHLKERFAS----NPNVEVI--NGDFLK--W-----DLY--------DLL--KNQPLLVVGNLPYNISSPIL  114 (262)
T ss_dssp             EESSHHHHHHHHHHCTT----CSSEEEE--ES-TTT--S-----CGG--------GHC--SSSEEEEEEEETGTGHHHHH
T ss_pred             ecCcHhHHHHHHHHhhh----cccceee--ecchhc--c-----ccH--------Hhh--cCCceEEEEEecccchHHHH
Confidence            99999999998886652    2457764  567641  0     000        000  24678999999865544444


Q ss_pred             HHHhh
Q 041970          306 DHIVS  310 (327)
Q Consensus       306 p~i~~  310 (327)
                      -.+..
T Consensus       115 ~~ll~  119 (262)
T PF00398_consen  115 RKLLE  119 (262)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            44433

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	327
1ufk_A	254	Crystal Structure Of Tt0836 Length = 254		2e-06
3grz_A	205	Crystal Structure Of Ribosomal Protein L11 Methylas		2e-06
3cjt_A	254	Ribosomal Protein L11 Methyltransferase (prma) In C		2e-05

>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836 Length = 254

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 156 NWIKKAQESFHPVEVTKGLWIVP--EWNVQATNIILNPGLAFGTGEHATTKXXXXXXXXX 213
           +W++  +    P      + + P   W      +++ PG+AFGTG H TT+         
Sbjct: 58  DWLEAWRRDLKPALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARH 117
Query: 214 IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMK 251
           ++ G+  LD GT                  VDIDP V+  A  NA  N + P+ ++
Sbjct: 118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLE 173

>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase From Lactobacillus Delbrueckii Subsp. Bulgaricus Length = 205

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 74/184 (40%), Gaps = 51/184 (27%)
Query: 165 FHPVEVTKGLWIVPEWN-----VQATNII-LNPGLAFGTGEHATTKXXXXXXXXXIKGGE 218
           +H + +++ L IVPEW       +   II L+PGLAFGTG H TT+         +    
Sbjct: 3   YHVINLSRHLAIVPEWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPL 62
Query: 219 LFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT 259
              D GT                    DI  + + +A +NAALN I    ++        
Sbjct: 63  TVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQ-------- 114
Query: 260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVG 319
             +S+   VDG                 ++D+++ANIL   LL L   + S+      V 
Sbjct: 115 -KTSLLADVDG-----------------KFDLIVANILAEILLDLIPQLDSHLNEDGQVI 156
Query: 320 ISGI 323
            SGI
Sbjct: 157 FSGI 160

>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex With Dimethylated Ribosomal Protein L11 Length = 254

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 20/116 (17%)
Query: 156 NWIKKAQESFHPVEVTKGLWIVP--EWNVQATNIILNPGLAFGTGEHATTKXXXXXXXXX 213
           +W++  +    P      + + P   W      +++ PG+AFGTG   TT+         
Sbjct: 58  DWLEAWRRDLKPALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHAETTRLALKALARH 117
Query: 214 IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMK 251
           ++ G+  LD GT                  VDIDP V+  A  NA  N + P+ ++
Sbjct: 118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLE 173

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	327
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	3e-50
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	2e-48
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score =  165 bits (419), Expect = 3e-50
 Identities = 48/188 (25%), Positives = 72/188 (38%), Gaps = 51/188 (27%)

Query: 165 FHPVEVTKGLWIVPEW------NVQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGE 218
           +H + +++ L IVPEW            I L+PGLAFGTG H TT+L +L +   +    
Sbjct: 3   YHVINLSRHLAIVPEWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPL 62

Query: 219 LFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT 259
              D GT                    DI  + + +A +NAALN I    ++   +    
Sbjct: 63  TVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA-- 120

Query: 260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVG 319
                                       ++D+++ANIL   LL L   + S+      V 
Sbjct: 121 ------------------------DVDGKFDLIVANILAEILLDLIPQLDSHLNEDGQVI 156

Query: 320 ISGILSEQ 327
            SGI   Q
Sbjct: 157 FSGIDYLQ 164

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score =  162 bits (411), Expect = 2e-48
 Identities = 44/204 (21%), Positives = 71/204 (34%), Gaps = 48/204 (23%)

Query: 145 PRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIVPEW---NVQATNIILNPGLAFGTGEHA 201
                +     +W++  +    P        ++  W         +++ PG+AFGTG H 
Sbjct: 47  YEGVWEEVGDEDWLEAWRRDLKPALAPP-FVVLAPWHTWEGAEIPLVIEPGMAFGTGHHE 105

Query: 202 TTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALN 243
           TT+L L  L   ++ G+  LD GT                  VDIDP V+  A  NA  N
Sbjct: 106 TTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN 165

Query: 244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQ 303
                      V  R    S+   +                    +D+++AN+       
Sbjct: 166 G----------VRPRFLEGSLEAAL----------------PFGPFDLLVANLYAELHAA 199

Query: 304 LADHIVSYAKPGAVVGISGILSEQ 327
           LA        PG    ++GIL ++
Sbjct: 200 LAPRYREALVPGGRALLTGILKDR 223

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 52/152 (34%)

Query: 195 FGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKS 235
           + T         + +      GG   +D GT                    DIDP  I++
Sbjct: 30  YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIET 89

Query: 236 AHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIAN 295
           A +N    N                       +   V  +S           +YD  I N
Sbjct: 90  AKRNCGGVNF----------------------MVADVSEIS----------GKYDTWIMN 117

Query: 296 ILLNPLLQLAD-HIVSYAKPGAVVGISGILSE 326
                +++ +D   +  A   ++   S   ++
Sbjct: 118 PPFGSVVKHSDRAFIDKAFETSMWIYSIGNAK 149

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 31/229 (13%), Positives = 61/229 (26%), Gaps = 59/229 (25%)

Query: 66  PPSVESPYLLVRICC--QKHALDMFSEAPLCFGASSTSVDEHDND------ADENSDEIY 117
             +V     L       Q+  +  F E           V   +          E      
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVE----------EVLRINYKFLMSPIKTEQRQPSM 107

Query: 118 IDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQCNWIKKAQESFHPVEVTKGLWIV 177
           +  ++ E +D     L   N +      +Y V   +    +++A     P          
Sbjct: 108 MTRMYIEQRDR----LYNDNQV----FAKYNVSRLQPYLKLRQALLELRP---------- 149

Query: 178 PEWNVQATNIILNPGLAFGTGEHATTKLCLLL--LRS----LIKGGELF-LDYGTVDIDP 230
                 A N++++ G+  G+G     K  + L    S         ++F L+    +   
Sbjct: 150 ------AKNVLID-GVL-GSG-----KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 231 QVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHK 279
            V++       L  I P                ++     +   L S  
Sbjct: 197 TVLE--MLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKP 242

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	327
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	100.0
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.86
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.41
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.4
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.37
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.35
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.25
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.25
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.21
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.19
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.19
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.19
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.18
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.17
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.15
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.13
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.12
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.12
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.1
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.09
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.09
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.07
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.06
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.05
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.04
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.04
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.04
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.03
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.01
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.01
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.01
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.98
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.97
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.95
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.95
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.95
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.94
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.94
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.92
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.91
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.91
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.9
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.89
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.89
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.89
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.89
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.88
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.87
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.87
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.87
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.84
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.84
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.83
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.83
3ocj_A	305	Putative exported protein; structural genomics, PS	98.82
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.82
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.81
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.81
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.81
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.81
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.8
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.8
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.8
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.79
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.79
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.79
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.77
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.76
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.75
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.75
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.74
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.74
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.74
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.74
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.74
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.73
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.73
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.73
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.73
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.73
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.72
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.72
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.72
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.72
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.72
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.71
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.71
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.7
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.69
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.69
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.68
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.68
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.68
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.67
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.67
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.67
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.67
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.65
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.65
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.64
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.64
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.63
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.63
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.63
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.62
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.62
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.62
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.62
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.62
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.62
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.6
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.6
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.6
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.6
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.6
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.6
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.59
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.58
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.58
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.57
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.56
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.56
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.56
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.55
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.55
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.55
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.54
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.54
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.54
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.54
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.53
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.53
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.53
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.53
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.52
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.52
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.52
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.52
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.51
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.51
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.51
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.51
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.5
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.5
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.49
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.49
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.49
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.48
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.48
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.48
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.48
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.48
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.48
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.47
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.47
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.47
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.47
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.47
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.47
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.47
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.46
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.45
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.45
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.45
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.44
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.43
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.43
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.42
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.42
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.42
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.42
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.42
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.42
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.41
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.41
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.41
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.41
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.4
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.4
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.39
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.39
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.39
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.39
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.37
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.37
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.36
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.36
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.36
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.36
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.36
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.35
2o07_A	304	Spermidine synthase; structural genomics, structur	98.35
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.35
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.33
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.33
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.33
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.32
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.32
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.32
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.3
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.29
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.28
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.28
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.28
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.27
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.26
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.25
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.24
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.23
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.21
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.21
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.21
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.19
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.19
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.18
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.18
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.17
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.17
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.16
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.15
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.14
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.12
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.09
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.09
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.08
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.06
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.05
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.05
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.02
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	97.97
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	97.96
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.95
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.92
3cc8_A	230	Putative methyltransferase; structural genomics, j	97.91
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.85
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.8
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	97.78
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.76
3lkd_A	542	Type I restriction-modification system methyltrans	97.74
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.73
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.71
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.7
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.69
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.69
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	97.69
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	97.66
3khk_A	544	Type I restriction-modification system methylation	97.61
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.59
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.56
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.51
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.51
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.51
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.5
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.42
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.41
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.38
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.38
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.36
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.33
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.31
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.31
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.25
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.24
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.22
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.22
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.2
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.1
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	96.95
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	96.92
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	96.84
3ufb_A	530	Type I restriction-modification system methyltran	96.8
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	96.77
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	96.76
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	96.43
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	96.33
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	96.16
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	95.87
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.79
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	95.68
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.67
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	95.65
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	95.52
3cjs_A	59	L11 mtase, ribosomal protein L11 methyltransferase	95.35
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	95.3
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	94.24
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	92.5
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	91.58
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	91.38
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	89.63
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	89.49
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	89.38
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	88.95
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	88.28
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	87.78
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	85.48
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	83.75
4gua_A	670	Non-structural polyprotein; viral precursor polypr	82.56
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	81.07
2zig_A	297	TTHA0409, putative modification methylase; methylt	80.14

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=100.00  E-value=3.1e-38  Score=291.16  Aligned_cols=201  Identities=26%  Similarity=0.397  Sum_probs=169.2

Q ss_pred             EEEEEEeCCchHHHHHHHHHhcCCceEEEEcCCCCCCCCCCcEEEEEEcCCCCCHHHHHHhhhhhcCCCCCCcceeeecc
Q 041970           74 LLVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGE  153 (327)
Q Consensus        74 ~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~~~~~~~~~~v~ayfp~~~~~~~~l~~~~~~~~l~~~~~~~~~~~e  153 (327)
                      ++|+|.|+++++|+++++|.+.|+.|++++|.           .|++||+++.+..        .++       .++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-----------~~~~~~~~~~~~~--------~~~-------~~~~~~   55 (254)
T 2nxc_A            2 WVYRLKGTLEALDPILPGLFDGGARGLWEREG-----------EVWAFFPAPVDLP--------YEG-------VWEEVG   55 (254)
T ss_dssp             EEEEEESCHHHHGGGHHHHHHTTCCEEEEETT-----------EEEEEESSCCCCS--------SCC-------EEEECC
T ss_pred             EEEEEEcCHHHHHHHHHHHHhhCCCEEEEECC-----------eEEEEEcCCcchh--------hcC-------ceeecC
Confidence            68999999999999999999999999998752           7899999876543        111       566678


Q ss_pred             chhhHHHHhhcCceEEEcCcEEEEcCCCC---CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-----
Q 041970          154 QCNWIKKAQESFHPVEVTKGLWIVPEWNV---QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-----  225 (327)
Q Consensus       154 e~DW~~~Wk~~f~P~~vg~~l~I~P~W~~---~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-----  225 (327)
                      ++||++.||++|+|+++|+ ++|+|+|+.   +...+.|+||||||||+|+||++|+++|+++++++++|||+||     
T Consensus        56 ~~dw~~~~~~~~~p~~~~~-~~i~~~w~~~~~~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~~~~~~VLDiGcG~G~l  134 (254)
T 2nxc_A           56 DEDWLEAWRRDLKPALAPP-FVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVL  134 (254)
T ss_dssp             HHHHHHHHHHHCCCEEETT-EEEECTTCCCCSSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHH
T ss_pred             hhHHHHHHHhhCCCEEEec-EEEeCCCCCCCCCceEEEECCCccccCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCcHH
Confidence            8899999999999999998 999999983   4577999999999999999999999999999889999999999     


Q ss_pred             -------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEE
Q 041970          226 -------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVV  292 (327)
Q Consensus       226 -------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlV  292 (327)
                                   +|+||.+++.|++|++.|++.   +++.  .+|..         +           .+ +.++||+|
T Consensus       135 ~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~---v~~~--~~d~~---------~-----------~~-~~~~fD~V  188 (254)
T 2nxc_A          135 AIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR---PRFL--EGSLE---------A-----------AL-PFGPFDLL  188 (254)
T ss_dssp             HHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC---CEEE--ESCHH---------H-----------HG-GGCCEEEE
T ss_pred             HHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCc---EEEE--ECChh---------h-----------cC-cCCCCCEE
Confidence                         999999999999999999975   4543  34431         1           01 14689999


Q ss_pred             EEcCChHHHHHHHHHHhhccCCCcEEEEeeccCCC
Q 041970          293 IANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ  327 (327)
Q Consensus       293 vANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~~Q  327 (327)
                      ++|++.+.+..+++.+.++|+|||++++||++.+|
T Consensus       189 v~n~~~~~~~~~l~~~~~~LkpgG~lils~~~~~~  223 (254)
T 2nxc_A          189 VANLYAELHAALAPRYREALVPGGRALLTGILKDR  223 (254)
T ss_dssp             EEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGG
T ss_pred             EECCcHHHHHHHHHHHHHHcCCCCEEEEEeeccCC
Confidence            99999999999999999999999999999998653

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.86  E-value=2.3e-21  Score=170.25  Aligned_cols=137  Identities=35%  Similarity=0.508  Sum_probs=115.1

Q ss_pred             hcCceEEEcCcEEEEcCCCC------CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-----------
Q 041970          163 ESFHPVEVTKGLWIVPEWNV------QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-----------  225 (327)
Q Consensus       163 ~~f~P~~vg~~l~I~P~W~~------~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-----------  225 (327)
                      ++|+|+++|+.++++|.|..      +...+.++|+++||+|.|++++.+++++.++++++++|||+||           
T Consensus         1 ~~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~   80 (205)
T 3grz_A            1 KYYHVINLSRHLAIVPEWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHK   80 (205)
T ss_dssp             CCCCCEEEETTEEEEETTCCCCCSSTTCEEEEESCC-----CCHHHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHH
T ss_pred             CCCCcEEECCcEEEeccccccccCCCCceeEEecCCcccCCCCCccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHH
Confidence            58999999999999999982      2467899999999999999999999999999999999999999           


Q ss_pred             --------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC
Q 041970          226 --------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL  297 (327)
Q Consensus       226 --------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl  297 (327)
                              +|+++.+++.|++|++.+++. + +++.  .+|..                     .. ..++||+|++|..
T Consensus        81 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~-v~~~--~~d~~---------------------~~-~~~~fD~i~~~~~  134 (205)
T 3grz_A           81 LGAKSVLATDISDESMTAAEENAALNGIY-D-IALQ--KTSLL---------------------AD-VDGKFDLIVANIL  134 (205)
T ss_dssp             TTCSEEEEEESCHHHHHHHHHHHHHTTCC-C-CEEE--ESSTT---------------------TT-CCSCEEEEEEESC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHcCCC-c-eEEE--ecccc---------------------cc-CCCCceEEEECCc
Confidence                    999999999999999999986 3 6654  35542                     11 1478999999999


Q ss_pred             hHHHHHHHHHHhhccCCCcEEEEeeccC
Q 041970          298 LNPLLQLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       298 a~vL~~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                      .+.+..++..+.+.|+|||+++++++..
T Consensus       135 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~  162 (205)
T 3grz_A          135 AEILLDLIPQLDSHLNEDGQVIFSGIDY  162 (205)
T ss_dssp             HHHHHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEecCc
Confidence            9999999999999999999999998754

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.41  E-value=6e-13  Score=122.31  Aligned_cols=96  Identities=13%  Similarity=0.168  Sum_probs=81.9

Q ss_pred             HHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          207 LLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       207 Le~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      |+++.+++++|.+|||+||                    +|+|+.|++.|++|+++||+. +++++.  .+|.+      
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~-~~I~~~--~gD~l------   82 (230)
T 3lec_A           12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT-SKIDVR--LANGL------   82 (230)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEE--ECSGG------
T ss_pred             HHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEE--ECchh------
Confidence            5788999999999999999                    999999999999999999997 678875  46653      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEE-EEcCChHHHHHHHHHHhhccCCCcEEEEeeccC
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVV-IANILLNPLLQLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlV-vANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                        +            .+.+..+||+| +||+.++.+..++++....|+++|+||+||+..
T Consensus        83 --~------------~~~~~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~~~  128 (230)
T 3lec_A           83 --S------------AFEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPNNR  128 (230)
T ss_dssp             --G------------GCCGGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred             --h------------ccccccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECCCC
Confidence              1            12123379975 599999999999999999999999999999864

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.40  E-value=1.7e-12  Score=126.93  Aligned_cols=113  Identities=18%  Similarity=0.231  Sum_probs=93.4

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHHHhhhc----CCCeeeeeee------------------ecCCHHHHHHHHHHHHh
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIK----GGELFLDYGT------------------VDIDPQVIKSAHQNAAL  242 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~----~g~~VLDvGc------------------VDIDp~AV~~A~eNa~l  242 (327)
                      ..+..+||+.|+++.+++|+++++.+.+.+.    ++.+|||+||                  +|+|+.+++.|++|++.
T Consensus       198 ~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~  277 (381)
T 3dmg_A          198 YTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEA  277 (381)
T ss_dssp             EEEEECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHH
T ss_pred             EEEEeCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH
Confidence            4688999999999999999999999988764    7889999999                  99999999999999999


Q ss_pred             cCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC--------hHHHHHHHHHHhhccCC
Q 041970          243 NNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL--------LNPLLQLADHIVSYAKP  314 (327)
Q Consensus       243 Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl--------a~vL~~L~p~i~~~Lkp  314 (327)
                      |++.   +++.  .+|..         +           .....++||+|++|..        .+....++..+.++|||
T Consensus       278 ~~~~---v~~~--~~D~~---------~-----------~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~Lkp  332 (381)
T 3dmg_A          278 NALK---AQAL--HSDVD---------E-----------ALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRP  332 (381)
T ss_dssp             TTCC---CEEE--ECSTT---------T-----------TSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEE
T ss_pred             cCCC---eEEE--Ecchh---------h-----------ccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCc
Confidence            9975   4443  35542         0           0112468999999954        35567899999999999


Q ss_pred             CcEEEEee
Q 041970          315 GAVVGISG  322 (327)
Q Consensus       315 GG~LIlSG  322 (327)
                      ||+++++.
T Consensus       333 GG~l~iv~  340 (381)
T 3dmg_A          333 GGVFFLVS  340 (381)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEEEEE
Confidence            99999974

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.37  E-value=1.4e-12  Score=120.84  Aligned_cols=96  Identities=13%  Similarity=0.132  Sum_probs=81.3

Q ss_pred             HHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          207 LLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       207 Le~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      |+++.+++++|.+|||+||                    +|+|+.|++.|++|+++||+. +++++.  .+|.+      
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~-~~I~v~--~gD~l------   82 (244)
T 3gnl_A           12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT-EQIDVR--KGNGL------   82 (244)
T ss_dssp             HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEE--ECSGG------
T ss_pred             HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEE--ecchh------
Confidence            6788999999999999999                    999999999999999999997 678875  46653      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEE-EEcCChHHHHHHHHHHhhccCCCcEEEEeeccC
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVV-IANILLNPLLQLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlV-vANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                        +            .+.+..+||+| +||+..+.+..++++...+|+++|+||+|++..
T Consensus        83 --~------------~~~~~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~~~  128 (244)
T 3gnl_A           83 --A------------VIEKKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPNIA  128 (244)
T ss_dssp             --G------------GCCGGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred             --h------------ccCccccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence              0            12112369975 599999999999999999999999999999753

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.35  E-value=2.2e-12  Score=118.12  Aligned_cols=95  Identities=17%  Similarity=0.217  Sum_probs=80.2

Q ss_pred             HHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          207 LLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       207 Le~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      |+.+.+++++|.+|||+||                    +|+++.|++.|++|++.||+. +++++.  .+|.+      
T Consensus         6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~-~~i~~~--~~d~l------   76 (225)
T 3kr9_A            6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK-EKIQVR--LANGL------   76 (225)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEE--ECSGG------
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEE--ECchh------
Confidence            6789999999999999999                    999999999999999999997 678875  46653      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEE-EEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVV-IANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlV-vANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                        +            .+....+||+| +||+-...+..+++....+|+++|+||++++.
T Consensus        77 --~------------~l~~~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~~  121 (225)
T 3kr9_A           77 --A------------AFEETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNN  121 (225)
T ss_dssp             --G------------GCCGGGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEESS
T ss_pred             --h------------hcccCcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence              1            12112369955 58999889999999999999999999999984

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.25  E-value=8.9e-12  Score=121.38  Aligned_cols=114  Identities=17%  Similarity=0.188  Sum_probs=90.4

Q ss_pred             ceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc
Q 041970          184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      ...+..+||+.+..+.++.|+++++++..  .++.+|||+||                    +|+++.+++.|++|++.|
T Consensus       192 ~~~~~~~pg~Fs~~~~d~~~~~ll~~l~~--~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~n  269 (375)
T 4dcm_A          192 DWTIHNHANVFSRTGLDIGARFFMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN  269 (375)
T ss_dssp             TEEEEECTTCTTCSSCCHHHHHHHHTCCC--SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             ceEEEeCCCcccCCcccHHHHHHHHhCcc--cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHc
Confidence            35688899999999999999999888763  35689999999                    999999999999999999


Q ss_pred             CCCC-CcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH--------HHHHHHHHHhhccCC
Q 041970          244 NIGP-KKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN--------PLLQLADHIVSYAKP  314 (327)
Q Consensus       244 gv~~-~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~--------vL~~L~p~i~~~Lkp  314 (327)
                      ++.. .++++.  .+|..        +            .+ ..++||+|++|+..+        ....++..+.++|||
T Consensus       270 gl~~~~~v~~~--~~D~~--------~------------~~-~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp  326 (375)
T 4dcm_A          270 MPEALDRCEFM--INNAL--------S------------GV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI  326 (375)
T ss_dssp             CGGGGGGEEEE--ECSTT--------T------------TC-CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEE
T ss_pred             CCCcCceEEEE--echhh--------c------------cC-CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC
Confidence            9762 135443  45552        0            11 256899999997643        345688999999999


Q ss_pred             CcEEEEee
Q 041970          315 GAVVGISG  322 (327)
Q Consensus       315 GG~LIlSG  322 (327)
                      ||++++++
T Consensus       327 gG~l~iv~  334 (375)
T 4dcm_A          327 NGELYIVA  334 (375)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEEEEE
Confidence            99999975

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.25  E-value=4.9e-12  Score=113.76  Aligned_cols=98  Identities=21%  Similarity=0.127  Sum_probs=77.8

Q ss_pred             CchhhHHHHHHHHHhh-------hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcE
Q 041970          198 GEHATTKLCLLLLRSL-------IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKM  250 (327)
Q Consensus       198 G~H~TT~lcLe~Le~~-------~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v  250 (327)
                      ..|++||+||..++++       +.+..+|||+||                    +|||+.+++.|++|++.||+. .++
T Consensus        24 ~~H~STReRLp~ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~-~~v  102 (200)
T 3fzg_A           24 KIHSSTNERVATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTT-IKY  102 (200)
T ss_dssp             HHSHHHHTTGGGHHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCS-SEE
T ss_pred             hhCCCHHHHhHhHHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ccE
Confidence            3699999999999987       456789999999                    999999999999999999987 456


Q ss_pred             EEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHH---HHHHHhhccCCCcEEEEe
Q 041970          251 KLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQ---LADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       251 ~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~---L~p~i~~~LkpGG~LIlS  321 (327)
                      ++.    |..        ..             .+.++||+|+++-+.+.+.+   .+-.+.+.|+|||.+|.-
T Consensus       103 ~~~----d~~--------~~-------------~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A          103 RFL----NKE--------SD-------------VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             EEE----CCH--------HH-------------HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEE
T ss_pred             EEe----ccc--------cc-------------CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEe
Confidence            652    221        10             13678999999988777743   233899999999988753

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.21  E-value=3.6e-11  Score=104.12  Aligned_cols=104  Identities=18%  Similarity=0.193  Sum_probs=76.9

Q ss_pred             CCchhhHHHHHHHHHhhh-----cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEE
Q 041970          197 TGEHATTKLCLLLLRSLI-----KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKL  252 (327)
Q Consensus       197 TG~H~TT~lcLe~Le~~~-----~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v  252 (327)
                      .|.+||+....+.+-+.+     .+|++|||+||                   +|+|+.+++.|++|++.|++.  ++++
T Consensus        20 ~~~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~v~~   97 (189)
T 3p9n_A           20 RGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLS--GATL   97 (189)
T ss_dssp             CCC---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCS--CEEE
T ss_pred             CCCccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCC--ceEE
Confidence            467888888877776655     57889999999                   999999999999999999983  5666


Q ss_pred             EecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH----HHHHHHHHHhh--ccCCCcEEEEee
Q 041970          253 HLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN----PLLQLADHIVS--YAKPGAVVGISG  322 (327)
Q Consensus       253 ~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~----vL~~L~p~i~~--~LkpGG~LIlSG  322 (327)
                      .  .+|..         +...        .. ..++||+|++|....    .+..++..+.+  +|+|||++++.-
T Consensus        98 ~--~~d~~---------~~~~--------~~-~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~  153 (189)
T 3p9n_A           98 R--RGAVA---------AVVA--------AG-TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVER  153 (189)
T ss_dssp             E--ESCHH---------HHHH--------HC-CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEE
T ss_pred             E--EccHH---------HHHh--------hc-cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEe
Confidence            4  45541         1110        01 146899999997643    46778888888  999999999863

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.19  E-value=5.8e-11  Score=124.46  Aligned_cols=118  Identities=17%  Similarity=0.257  Sum_probs=97.0

Q ss_pred             CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhc
Q 041970          183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      +.+.+.+|++..+.||.+...+.+.+++.++. +|++|||+||                   ||+++.|++.|++|+++|
T Consensus       507 ~g~~~~v~~~~~~~tG~f~d~r~~r~~l~~~~-~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~n  585 (703)
T 3v97_A          507 YNAHLWVNLTDYLDTGLFLDHRIARRMLGQMS-KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLN  585 (703)
T ss_dssp             TTEEEEECSSSSSSCSCCGGGHHHHHHHHHHC-TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEeccccccCCCcccHHHHHHHHHHhc-CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            45678899999999999999999999998865 6899999999                   999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--------------HHHHHHHHHHh
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------------NPLLQLADHIV  309 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------------~vL~~L~p~i~  309 (327)
                      |+..+++++.  .+|++         +.+.        .  ..++||+|++|+..              ..+..++..+.
T Consensus       586 gl~~~~v~~i--~~D~~---------~~l~--------~--~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~  644 (703)
T 3v97_A          586 GLTGRAHRLI--QADCL---------AWLR--------E--ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLK  644 (703)
T ss_dssp             TCCSTTEEEE--ESCHH---------HHHH--------H--CCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHH
T ss_pred             CCCccceEEE--ecCHH---------HHHH--------h--cCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHH
Confidence            9974567764  46642         1111        0  14689999999863              34667888999


Q ss_pred             hccCCCcEEEEee
Q 041970          310 SYAKPGAVVGISG  322 (327)
Q Consensus       310 ~~LkpGG~LIlSG  322 (327)
                      ++|+|||+|++|-
T Consensus       645 ~~LkpgG~L~~s~  657 (703)
T 3v97_A          645 RLLRAGGTIMFSN  657 (703)
T ss_dssp             HHEEEEEEEEEEE
T ss_pred             HhcCCCcEEEEEE
Confidence            9999999999875

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.19  E-value=6.3e-11  Score=113.59  Aligned_cols=121  Identities=12%  Similarity=0.098  Sum_probs=93.6

Q ss_pred             CceeEEEccCcccCCCchhhHHHHHHHHHhhhc---CCCeeeeeee------------------ecCCHHHHHHHHHHHH
Q 041970          183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIK---GGELFLDYGT------------------VDIDPQVIKSAHQNAA  241 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~---~g~~VLDvGc------------------VDIDp~AV~~A~eNa~  241 (327)
                      +...+.++|...|-||..+.++...+++.+++.   ++++|||+||                  ||+++.|++.|++|++
T Consensus       117 ~g~~f~v~~~~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~  196 (332)
T 2igt_A          117 LGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQV  196 (332)
T ss_dssp             TTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHH
T ss_pred             CCEEEEEecCccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH
Confidence            456788999999999999999999888888874   5779999999                  9999999999999999


Q ss_pred             hcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------HHHHHHHHHH
Q 041970          242 LNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------NPLLQLADHI  308 (327)
Q Consensus       242 lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------~vL~~L~p~i  308 (327)
                      +|++...++++.  .+|+.         +....       .....++||+|++|+..             ..+..++..+
T Consensus       197 ~~gl~~~~v~~i--~~D~~---------~~l~~-------~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~  258 (332)
T 2igt_A          197 LAGLEQAPIRWI--CEDAM---------KFIQR-------EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDIC  258 (332)
T ss_dssp             HHTCTTSCEEEE--CSCHH---------HHHHH-------HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHH
T ss_pred             HcCCCccceEEE--ECcHH---------HHHHH-------HHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHH
Confidence            999863247764  45642         11100       00013589999999862             2456788889


Q ss_pred             hhccCCCcEEEEe
Q 041970          309 VSYAKPGAVVGIS  321 (327)
Q Consensus       309 ~~~LkpGG~LIlS  321 (327)
                      .++|+|||+++++
T Consensus       259 ~~~LkpgG~lli~  271 (332)
T 2igt_A          259 REILSPKALGLVL  271 (332)
T ss_dssp             HHTBCTTCCEEEE
T ss_pred             HHhcCcCcEEEEE
Confidence            9999999997664

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.19  E-value=5.9e-11  Score=109.89  Aligned_cols=102  Identities=19%  Similarity=0.259  Sum_probs=82.1

Q ss_pred             CchhhHHHHHHHHHhhhcCCCeeeeeee----------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEec
Q 041970          198 GEHATTKLCLLLLRSLIKGGELFLDYGT----------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLV  255 (327)
Q Consensus       198 G~H~TT~lcLe~Le~~~~~g~~VLDvGc----------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~  255 (327)
                      |.+...+++..++++++++|.+|||+||                      ||+++.+++.|++|++..+.. .++++.  
T Consensus        52 ~Y~~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~-~~v~~~--  128 (261)
T 4gek_A           52 GYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDVI--  128 (261)
T ss_dssp             THHHHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS-SCEEEE--
T ss_pred             CHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC-ceEEEe--
Confidence            4677788888899999999999999999                      899999999999999988876 567764  


Q ss_pred             CCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-----HHHHHHHHhhccCCCcEEEEeecc
Q 041970          256 PDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-----L~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .+|..                     .+ +.++||+|++|...+.     ...++..+.+.|||||+|+++-..
T Consensus       129 ~~D~~---------------------~~-~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          129 EGDIR---------------------DI-AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             ESCTT---------------------TC-CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ecccc---------------------cc-cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            45642                     12 1457999999965432     346889999999999999998543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.18  E-value=4.6e-11  Score=112.18  Aligned_cols=97  Identities=15%  Similarity=0.112  Sum_probs=78.1

Q ss_pred             CchhhHHHHHHHHHhhhc-------CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcE
Q 041970          198 GEHATTKLCLLLLRSLIK-------GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKM  250 (327)
Q Consensus       198 G~H~TT~lcLe~Le~~~~-------~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v  250 (327)
                      |.|++|++||..|+.+..       +..+|||+||                    +|||+.+++.+++|++.||+. .++
T Consensus       107 ~~H~STreRLp~lD~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~  185 (281)
T 3lcv_B          107 SVHISTRERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-HRT  185 (281)
T ss_dssp             TTSHHHHHHGGGHHHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEE
T ss_pred             hcCCCHHHHhHhHHHHHHHHHhccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceE
Confidence            689999999999997742       3579999999                    999999999999999999986 334


Q ss_pred             EEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHH-----HHHHHhhccCCCcEEEEe
Q 041970          251 KLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQ-----LADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       251 ~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~-----L~p~i~~~LkpGG~LIlS  321 (327)
                      .+    .|..                     .-.+.++||+|++|++.+.|.+     ++ .+...|+|||.+|--
T Consensus       186 ~v----~D~~---------------------~~~p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSf  235 (281)
T 3lcv_B          186 NV----ADLL---------------------EDRLDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTF  235 (281)
T ss_dssp             EE----CCTT---------------------TSCCCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEE
T ss_pred             EE----eeec---------------------ccCCCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEec
Confidence            32    4432                     0113678999999999999864     45 789999999988753

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.17  E-value=7.5e-11  Score=115.75  Aligned_cols=115  Identities=17%  Similarity=0.195  Sum_probs=93.7

Q ss_pred             CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcC
Q 041970          183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNN  244 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNg  244 (327)
                      +...+.+|+...+.||.+...+..-+++.++.++|++|||+||                  +|+++.|++.|++|+++|+
T Consensus       181 ~g~~f~vd~~~~~~tG~f~dqr~~r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng  260 (393)
T 4dmg_A          181 DGLRFPIPLALAQKTGYYLDQRENRRLFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLG  260 (393)
T ss_dssp             TTEEEEEETTTCCTTSSCGGGHHHHHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEechhccccCcCCCHHHHHHHHHHHhcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhC
Confidence            4567889999999999999999999999998888999999999                  9999999999999999999


Q ss_pred             CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhcc
Q 041970          245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSYA  312 (327)
Q Consensus       245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~L  312 (327)
                      +. .++.    .+|+.         +.+.        ..  .++||+|++|+..            ..+..++..+.++|
T Consensus       261 ~~-~~~~----~~D~~---------~~l~--------~~--~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~L  316 (393)
T 4dmg_A          261 LR-VDIR----HGEAL---------PTLR--------GL--EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLL  316 (393)
T ss_dssp             CC-CEEE----ESCHH---------HHHH--------TC--CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTE
T ss_pred             CC-CcEE----EccHH---------HHHH--------Hh--cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            97 3433    35542         1111        11  2349999999875            45567888899999


Q ss_pred             CCCcEEEEe
Q 041970          313 KPGAVVGIS  321 (327)
Q Consensus       313 kpGG~LIlS  321 (327)
                      +|||+|+++
T Consensus       317 kpGG~Lv~~  325 (393)
T 4dmg_A          317 AEEGFLWLS  325 (393)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCCEEEEE
Confidence            999999854

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.15  E-value=1.4e-10  Score=99.47  Aligned_cols=101  Identities=16%  Similarity=0.186  Sum_probs=77.9

Q ss_pred             hhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          200 HATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       200 H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      ...+.++.+++...+++|++|||+||                  +|+++.+++.|++|++.+++.  ++++..  ++.  
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~--~~~--   79 (185)
T 3mti_A            6 KRPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE--NTELIL--DGH--   79 (185)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCC--CEEEEE--SCG--
T ss_pred             HhHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEe--CcH--
Confidence            45578888899988899999999999                  999999999999999999983  577642  332  


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcC------------ChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANI------------LLNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANI------------la~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                             ..+.         .. ..++||+|++|+            ..+....++..+.++|||||++++...
T Consensus        80 -------~~l~---------~~-~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           80 -------ENLD---------HY-VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             -------GGGG---------GT-CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             -------HHHH---------hh-ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence                   1110         11 256899999995            224445677899999999999988643

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.13  E-value=1.5e-10  Score=98.52  Aligned_cols=106  Identities=12%  Similarity=0.137  Sum_probs=72.1

Q ss_pred             CCCchhhHHHHHHHHHhhhc---CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970          196 GTGEHATTKLCLLLLRSLIK---GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLH  253 (327)
Q Consensus       196 GTG~H~TT~lcLe~Le~~~~---~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~  253 (327)
                      |.+..||+....+.+.+.+.   ++++|||+||                   +|+++.+++.|++|++.+++. +++++.
T Consensus         8 ~~~~rp~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~   86 (177)
T 2esr_A            8 GKITRPTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE-NRFTLL   86 (177)
T ss_dssp             ----------CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG-GGEEEE
T ss_pred             CCCCCcCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEE
Confidence            55778999988888777654   6789999999                   999999999999999999986 467764


Q ss_pred             ecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--HHHHHHHHHHh--hccCCCcEEEEeec
Q 041970          254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--NPLLQLADHIV--SYAKPGAVVGISGI  323 (327)
Q Consensus       254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~vL~~L~p~i~--~~LkpGG~LIlSGI  323 (327)
                        .+|..         +...        ..  .++||+|++|...  .....++..+.  +.|+|||+++++-.
T Consensus        87 --~~d~~---------~~~~--------~~--~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~  139 (177)
T 2esr_A           87 --KMEAE---------RAID--------CL--TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETD  139 (177)
T ss_dssp             --CSCHH---------HHHH--------HB--CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             --ECcHH---------HhHH--------hh--cCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence              45541         1110        11  3579999999764  44455666666  89999999998753

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.12  E-value=1e-10  Score=103.15  Aligned_cols=114  Identities=14%  Similarity=0.149  Sum_probs=74.6

Q ss_pred             eEEEccCcccCCCchhhHHHHHHHHHhhh---cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhc
Q 041970          186 NIILNPGLAFGTGEHATTKLCLLLLRSLI---KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~~---~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      .+...+|    .+.+||+....+.+.+.+   .++.+|||+||                   +|+|+.+++.|++|++.|
T Consensus        24 ~l~~~~~----~~~rp~~~~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~   99 (201)
T 2ift_A           24 KLPVLNS----EGLRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTL   99 (201)
T ss_dssp             EEECC-------------CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred             EecCCCC----CCcCcCHHHHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHh
Confidence            4444443    467888888777665544   26889999999                   999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCC-eeEEEEcCC--hHHHHHHHHHH--hhccCCCcEE
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEE-YDVVIANIL--LNPLLQLADHI--VSYAKPGAVV  318 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~-fDlVvANIl--a~vL~~L~p~i--~~~LkpGG~L  318 (327)
                      ++..+++++.  .+|..         +..        ... ..++ ||+|++|..  ......++..+  .++|+|||++
T Consensus       100 ~~~~~~v~~~--~~d~~---------~~~--------~~~-~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l  159 (201)
T 2ift_A          100 KCSSEQAEVI--NQSSL---------DFL--------KQP-QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALI  159 (201)
T ss_dssp             TCCTTTEEEE--CSCHH---------HHT--------TSC-CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCccceEEE--ECCHH---------HHH--------Hhh-ccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEE
Confidence            9832357764  45531         111        011 1467 999999987  34455666677  5679999999


Q ss_pred             EEeec
Q 041970          319 GISGI  323 (327)
Q Consensus       319 IlSGI  323 (327)
                      +++-.
T Consensus       160 ~i~~~  164 (201)
T 2ift_A          160 YVETE  164 (201)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            98754

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.12  E-value=1.4e-10  Score=112.84  Aligned_cols=120  Identities=16%  Similarity=0.189  Sum_probs=95.8

Q ss_pred             CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhc
Q 041970          183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      +...+.++|...+.||.....+.+.+++.++ .+|++|||+||                   +|+++.|++.|++|+++|
T Consensus       188 ~g~~f~v~~~~~~~tgff~~~~~~~~~l~~~-~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~n  266 (396)
T 3c0k_A          188 HGMKLLVDIQHGHKTGYYLDQRDSRLATRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN  266 (396)
T ss_dssp             TTEEEEECTTTSSTTSSCGGGHHHHHHHHHH-CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEeccccccCCcCcCHHHHHHHHHHh-hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            3467889999999999999999998888887 67899999999                   999999999999999999


Q ss_pred             CC-CCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhh
Q 041970          244 NI-GPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVS  310 (327)
Q Consensus       244 gv-~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~  310 (327)
                      ++ . +++++.  .+|..         +....       .....++||+|++|+..            ..+..++..+.+
T Consensus       267 gl~~-~~v~~~--~~D~~---------~~~~~-------~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~  327 (396)
T 3c0k_A          267 KLDL-SKAEFV--RDDVF---------KLLRT-------YRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQ  327 (396)
T ss_dssp             TCCG-GGEEEE--ESCHH---------HHHHH-------HHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHH
T ss_pred             CCCc-cceEEE--ECCHH---------HHHHH-------HHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence            98 5 357764  45542         11100       00013589999999875            667788899999


Q ss_pred             ccCCCcEEEEee
Q 041970          311 YAKPGAVVGISG  322 (327)
Q Consensus       311 ~LkpGG~LIlSG  322 (327)
                      .|+|||++++|-
T Consensus       328 ~LkpgG~l~~~~  339 (396)
T 3c0k_A          328 LLNEGGILLTFS  339 (396)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             hcCCCcEEEEEe
Confidence            999999999864

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.10  E-value=1.2e-10  Score=113.21  Aligned_cols=120  Identities=22%  Similarity=0.288  Sum_probs=94.2

Q ss_pred             CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhc
Q 041970          183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      +...+.++| .+|.||.+..++.+.+++.++.++|++|||+||                   +|+++.|++.|++|+++|
T Consensus       185 ~g~~~~~~~-~~~~tg~f~~~~~~~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n  263 (396)
T 2as0_A          185 GRAKFIVDM-RGQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLN  263 (396)
T ss_dssp             TTEEEEEES-SSSSSCCCSTTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEec-cccccCccCCHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            346688999 889999999998988888887668899999999                   999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhc
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSY  311 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~  311 (327)
                      ++. +++++.  .+|+.         +....       .....++||+|++|+..            ..+..++..+.+.
T Consensus       264 ~~~-~~v~~~--~~d~~---------~~~~~-------~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~  324 (396)
T 2as0_A          264 GVE-DRMKFI--VGSAF---------EEMEK-------LQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNL  324 (396)
T ss_dssp             TCG-GGEEEE--ESCHH---------HHHHH-------HHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTT
T ss_pred             CCC-ccceEE--ECCHH---------HHHHH-------HHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            986 367764  35541         11100       00014689999999865            4567788899999


Q ss_pred             cCCCcEEEEee
Q 041970          312 AKPGAVVGISG  322 (327)
Q Consensus       312 LkpGG~LIlSG  322 (327)
                      |+|||+++++-
T Consensus       325 LkpgG~lv~~~  335 (396)
T 2as0_A          325 VKDGGILVTCS  335 (396)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cCCCcEEEEEE
Confidence            99999988873

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.09  E-value=3.3e-10  Score=105.19  Aligned_cols=112  Identities=16%  Similarity=0.159  Sum_probs=83.7

Q ss_pred             ceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcC
Q 041970          184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNN  244 (327)
Q Consensus       184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNg  244 (327)
                      .....+|+.-   ++.++..+.-.+.+.+++++|++|||+||                   +|+++.|++.|++|+++|+
T Consensus        96 g~~f~~d~~~---~~f~~~~~~~~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~  172 (278)
T 2frn_A           96 GIKYKLDVAK---IMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK  172 (278)
T ss_dssp             TEEEEEETTT---SCCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             CEEEEEEccc---eeEcCCcHHHHHHHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            4566777643   44555544445566666788999999999                   9999999999999999999


Q ss_pred             CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      +. +++++.  .+|..         +            ....++||+|++|..... ..+++.+.+.|+|||++++...
T Consensus       173 ~~-~~v~~~--~~D~~---------~------------~~~~~~fD~Vi~~~p~~~-~~~l~~~~~~LkpgG~l~~~~~  226 (278)
T 2frn_A          173 VE-DRMSAY--NMDNR---------D------------FPGENIADRILMGYVVRT-HEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             CT-TTEEEE--CSCTT---------T------------CCCCSCEEEEEECCCSSG-GGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CC-ceEEEE--ECCHH---------H------------hcccCCccEEEECCchhH-HHHHHHHHHHCCCCeEEEEEEe
Confidence            97 567764  46652         1            112568999999987543 4567788899999999998543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.09  E-value=5.9e-10  Score=103.43  Aligned_cols=86  Identities=8%  Similarity=0.054  Sum_probs=70.7

Q ss_pred             hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          214 IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       214 ~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      +++|++|||+||                   +|+++.+++.|++|++.+++. +++++.  .+|..              
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~--------------  132 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP-RRKEVR--IQGWE--------------  132 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCS-SCEEEE--ECCGG--------------
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEE--ECCHH--------------
Confidence            367889999999                   999999999999999999986 567765  34431              


Q ss_pred             cccccccCCCCCCCeeEEEEcCChHHH------------HHHHHHHhhccCCCcEEEEeeccC
Q 041970          275 LSSHKIRGISETEEYDVVIANILLNPL------------LQLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla~vL------------~~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                             .+  .++||+|++|-..+.+            ..++..+.++|||||++++..+..
T Consensus       133 -------~~--~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  186 (302)
T 3hem_A          133 -------EF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  186 (302)
T ss_dssp             -------GC--CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred             -------Hc--CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence                   12  5789999999765444            788999999999999999988753

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.07  E-value=1.9e-10  Score=111.54  Aligned_cols=118  Identities=19%  Similarity=0.289  Sum_probs=93.7

Q ss_pred             CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcC
Q 041970          183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNN  244 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNg  244 (327)
                      +...+.++|...+.||.+...+.+.+++.++  +|++|||+||                  +|+++.+++.|++|+++|+
T Consensus       178 ~g~~f~i~~~~~~~~g~f~~~~~~~~~~~~~--~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~  255 (382)
T 1wxx_A          178 GRVRYLVDLRAGQKTGAYLDQRENRLYMERF--RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNG  255 (382)
T ss_dssp             TTEEEEEECSTTSCCCCCGGGHHHHHHGGGC--CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEEchhcccCccccchHHHHHHHHhc--CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            3466889999999999999998888888877  7889999999                  9999999999999999999


Q ss_pred             CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhcc
Q 041970          245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSYA  312 (327)
Q Consensus       245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~L  312 (327)
                      +. + +++.  .+|..         +....       .....++||+|++|+..            ..+..++..+.+.|
T Consensus       256 ~~-~-~~~~--~~d~~---------~~~~~-------~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~L  315 (382)
T 1wxx_A          256 LG-N-VRVL--EANAF---------DLLRR-------LEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLL  315 (382)
T ss_dssp             CT-T-EEEE--ESCHH---------HHHHH-------HHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTE
T ss_pred             CC-C-ceEE--ECCHH---------HHHHH-------HHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhc
Confidence            86 3 6664  45541         11100       00014689999999865            55677888999999


Q ss_pred             CCCcEEEEee
Q 041970          313 KPGAVVGISG  322 (327)
Q Consensus       313 kpGG~LIlSG  322 (327)
                      +|||+|+++-
T Consensus       316 kpgG~l~~~~  325 (382)
T 1wxx_A          316 KEGGILATAS  325 (382)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999999874

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.06  E-value=4.3e-10  Score=105.83  Aligned_cols=113  Identities=17%  Similarity=0.237  Sum_probs=84.8

Q ss_pred             CceeEEEccCcc-cCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHh
Q 041970          183 QATNIILNPGLA-FGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAAL  242 (327)
Q Consensus       183 ~~~~I~idPG~A-FGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~l  242 (327)
                      ....+.+|+.-. |-.|.. |-+   +.+.+++++|++|||+||                   +|++|.|++.+++|+++
T Consensus        95 ~G~~~~~D~~k~~f~~~~~-~er---~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~  170 (278)
T 3k6r_A           95 NGIKYKLDVAKIMFSPANV-KER---VRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL  170 (278)
T ss_dssp             TTEEEEEETTTSCCCGGGH-HHH---HHHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCEEEEEeccceEEcCCcH-HHH---HHHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHH
Confidence            456788888643 444443 333   345566789999999999                   99999999999999999


Q ss_pred             cCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970          243 NNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       243 Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      |++. +++++.  .+|..                     .+...+.||.|++|++.... .+++.+.++||+||++.+-+
T Consensus       171 N~v~-~~v~~~--~~D~~---------------------~~~~~~~~D~Vi~~~p~~~~-~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          171 NKVE-DRMSAY--NMDNR---------------------DFPGENIADRILMGYVVRTH-EFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             TTCT-TTEEEE--CSCTT---------------------TCCCCSCEEEEEECCCSSGG-GGHHHHHHHEEEEEEEEEEE
T ss_pred             cCCC-CcEEEE--eCcHH---------------------HhccccCCCEEEECCCCcHH-HHHHHHHHHcCCCCEEEEEe
Confidence            9998 678875  56642                     12235789999999875443 45677788999999998766


Q ss_pred             cc
Q 041970          323 IL  324 (327)
Q Consensus       323 Il  324 (327)
                      +.
T Consensus       226 ~~  227 (278)
T 3k6r_A          226 TV  227 (278)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.05  E-value=4.1e-10  Score=104.57  Aligned_cols=97  Identities=19%  Similarity=0.093  Sum_probs=76.0

Q ss_pred             CchhhHHHHHHHHHhhh------cCCCeeeeeee-----------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEe
Q 041970          198 GEHATTKLCLLLLRSLI------KGGELFLDYGT-----------------VDIDPQVIKSAHQNAALNNIGPKKMKLHL  254 (327)
Q Consensus       198 G~H~TT~lcLe~Le~~~------~~g~~VLDvGc-----------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~  254 (327)
                      ..|++|++||..|+.+.      .+..+|||+||                 +|||+.+++.+++|+.+||..   .++. 
T Consensus        81 ~~H~STrerLp~ld~fY~~i~~~~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~---~~~~-  156 (253)
T 3frh_A           81 SLHASTKERLAELDTLYDFIFSAETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWD---FTFA-  156 (253)
T ss_dssp             TTSHHHHHHGGGHHHHHHHHTSSCCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCE---EEEE-
T ss_pred             hhCCCHHHHhhhHHHHHHHHhcCCCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCC---ceEE-
Confidence            47999999999999874      35679999999                 999999999999999999964   3433 


Q ss_pred             cCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHH----HHHHhhccCCCcEEEE
Q 041970          255 VPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQL----ADHIVSYAKPGAVVGI  320 (327)
Q Consensus       255 ~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L----~p~i~~~LkpGG~LIl  320 (327)
                       ..|..                     .....++||+|++|.+.+.|...    .-.+...|+++|.+|-
T Consensus       157 -v~D~~---------------------~~~~~~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVs  204 (253)
T 3frh_A          157 -LQDVL---------------------CAPPAEAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVS  204 (253)
T ss_dssp             -ECCTT---------------------TSCCCCBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEE
T ss_pred             -Eeecc---------------------cCCCCCCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEE
Confidence             24542                     01135689999999999998642    2267789999987764

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.04  E-value=2.2e-10  Score=97.66  Aligned_cols=107  Identities=15%  Similarity=0.167  Sum_probs=76.8

Q ss_pred             CCchhhHHHHHHHHHhhhc---CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEe
Q 041970          197 TGEHATTKLCLLLLRSLIK---GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHL  254 (327)
Q Consensus       197 TG~H~TT~lcLe~Le~~~~---~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~  254 (327)
                      ...+||+....+.+.+.+.   ++++|||+||                   +|+++.+++.|++|++.|++. +++++. 
T Consensus        22 ~~~rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~-   99 (187)
T 2fhp_A           22 DNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP-EKFEVR-   99 (187)
T ss_dssp             CSSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEE-
T ss_pred             CCcCcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cceEEE-
Confidence            3667888888887776653   6789999999                   999999999999999999985 467764 


Q ss_pred             cCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--HHHHHHHHHH--hhccCCCcEEEEee
Q 041970          255 VPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--NPLLQLADHI--VSYAKPGAVVGISG  322 (327)
Q Consensus       255 ~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~vL~~L~p~i--~~~LkpGG~LIlSG  322 (327)
                       .+|..         +....     . .. ..++||+|++|...  ......+..+  .++|+|||+++++-
T Consensus       100 -~~d~~---------~~~~~-----~-~~-~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~  154 (187)
T 2fhp_A          100 -KMDAN---------RALEQ-----F-YE-EKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCET  154 (187)
T ss_dssp             -ESCHH---------HHHHH-----H-HH-TTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             -ECcHH---------HHHHH-----H-Hh-cCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEe
Confidence             35541         11100     0 00 14689999999763  2234445555  78899999998864

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.04  E-value=5.7e-10  Score=98.39  Aligned_cols=104  Identities=13%  Similarity=0.125  Sum_probs=71.5

Q ss_pred             CCchhhHHHHHHHHHhhhc---CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEe
Q 041970          197 TGEHATTKLCLLLLRSLIK---GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHL  254 (327)
Q Consensus       197 TG~H~TT~lcLe~Le~~~~---~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~  254 (327)
                      .+.+||+....+.+.+.+.   ++.+|||+||                   +|+++.+++.|++|++.|++.  ++++. 
T Consensus        32 ~~~rp~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~--~v~~~-  108 (202)
T 2fpo_A           32 PGLRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG--NARVV-  108 (202)
T ss_dssp             ------CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC--SEEEE-
T ss_pred             CCCCCCHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCC--cEEEE-
Confidence            4678888877776665542   6889999999                   999999999999999999983  57664 


Q ss_pred             cCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC--hHHHHHHHHHHhh--ccCCCcEEEEeec
Q 041970          255 VPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL--LNPLLQLADHIVS--YAKPGAVVGISGI  323 (327)
Q Consensus       255 ~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl--a~vL~~L~p~i~~--~LkpGG~LIlSGI  323 (327)
                       .+|..         +..         .. ..++||+|++|..  ......++..+.+  +|+|||+++++-.
T Consensus       109 -~~D~~---------~~~---------~~-~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          109 -NSNAM---------SFL---------AQ-KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESE  161 (202)
T ss_dssp             -CSCHH---------HHH---------SS-CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             -ECCHH---------HHH---------hh-cCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence             45541         111         11 2468999999976  2334455566654  5999999998754

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.04  E-value=1.6e-09  Score=91.98  Aligned_cols=100  Identities=19%  Similarity=0.255  Sum_probs=76.9

Q ss_pred             chhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970          199 EHATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       199 ~H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~  260 (327)
                      ..+.++..++.+.  .+++.+|||+||                  +|+++.+++.|++|++.+++...++++.  .+|..
T Consensus        37 ~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~--~~d~~  112 (194)
T 1dus_A           37 VDKGTKILVENVV--VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVV--HSDLY  112 (194)
T ss_dssp             CCHHHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEE--ECSTT
T ss_pred             cchHHHHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEE--ECchh
Confidence            3467777777764  347889999999                  9999999999999999999863257764  35542


Q ss_pred             CCCccccccchhhhcccccccCCCCCCCeeEEEEcCC----hHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL----LNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl----a~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                               +           .. ..++||+|++|..    ...+..++..+.++|+|||+++++..
T Consensus       113 ---------~-----------~~-~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  158 (194)
T 1dus_A          113 ---------E-----------NV-KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             ---------T-----------TC-TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---------c-----------cc-ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence                     0           11 2468999999986    34567888999999999999998754

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.03  E-value=6.6e-10  Score=108.23  Aligned_cols=123  Identities=13%  Similarity=0.068  Sum_probs=93.7

Q ss_pred             CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhc
Q 041970          183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      ....+.++|+..+.||....++..-.++.+++.+|++|||+||                   +|+++.|++.|++|+++|
T Consensus       179 ~g~~f~v~~~~~~~t~ff~~~~~~~~~~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n  258 (385)
T 2b78_A          179 NGISYNVFLNDGLMTGIFLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEAN  258 (385)
T ss_dssp             TTEEEEECSSSSSCCSSCGGGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHT
T ss_pred             CCEEEEEeccccccCCcCCcHHHHHHHHHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            4577899999888899888888888888877567899999999                   999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhc
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSY  311 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~  311 (327)
                      ++...++++.  .+|+.         +.+..       ......+||+|++|+..            ..+..++..+.+.
T Consensus       259 ~~~~~~v~~~--~~D~~---------~~l~~-------~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~  320 (385)
T 2b78_A          259 HLDMANHQLV--VMDVF---------DYFKY-------ARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEI  320 (385)
T ss_dssp             TCCCTTEEEE--ESCHH---------HHHHH-------HHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHT
T ss_pred             CCCccceEEE--ECCHH---------HHHHH-------HHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHh
Confidence            9963267764  45642         11100       00013589999999764            2345577788999


Q ss_pred             cCCCcEEEEeec
Q 041970          312 AKPGAVVGISGI  323 (327)
Q Consensus       312 LkpGG~LIlSGI  323 (327)
                      |+|||+++++--
T Consensus       321 L~pgG~l~~~~~  332 (385)
T 2b78_A          321 LSENGLIIASTN  332 (385)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             cCCCcEEEEEeC
Confidence            999999998853

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.01  E-value=1.3e-09  Score=96.57  Aligned_cols=106  Identities=16%  Similarity=0.187  Sum_probs=77.0

Q ss_pred             cccCCCchhhHHHHHHH-HHhh--hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEE
Q 041970          193 LAFGTGEHATTKLCLLL-LRSL--IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMK  251 (327)
Q Consensus       193 ~AFGTG~H~TT~lcLe~-Le~~--~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~  251 (327)
                      -.| ...++.|...+.. +.+.  +.++++|||+||                  +|+++.+++.|++|++.+++. ++++
T Consensus        30 ~~f-~~~~~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~-~~v~  107 (204)
T 3njr_A           30 SAF-AHDGQITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLS-PRMR  107 (204)
T ss_dssp             GGS-CCSSCCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCT-TTEE
T ss_pred             HHh-hcCCCCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCEE
Confidence            457 5555666544432 2222  357889999999                  999999999999999999986 4677


Q ss_pred             EEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          252 LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       252 v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      +.  .+|..         +.           +....+||+|++|...+ .. ++..+.+.|||||+++++.+.
T Consensus       108 ~~--~~d~~---------~~-----------~~~~~~~D~v~~~~~~~-~~-~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          108 AV--QGTAP---------AA-----------LADLPLPEAVFIGGGGS-QA-LYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             EE--ESCTT---------GG-----------GTTSCCCSEEEECSCCC-HH-HHHHHHHHSCTTCEEEEEECS
T ss_pred             EE--eCchh---------hh-----------cccCCCCCEEEECCccc-HH-HHHHHHHhcCCCcEEEEEecC
Confidence            64  45542         11           11135799999997443 33 889999999999999998864

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.01  E-value=5.9e-10  Score=101.68  Aligned_cols=85  Identities=19%  Similarity=0.184  Sum_probs=66.9

Q ss_pred             CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      ++++|||+||                   +|+++.+++.|++|++.|++. +++++.  .+|..         +..    
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~-~~v~~~--~~D~~---------~~~----  112 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLE-DQIEII--EYDLK---------KIT----  112 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCT-TTEEEE--CSCGG---------GGG----
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCc-ccEEEE--ECcHH---------Hhh----
Confidence            6889999999                   999999999999999999997 578774  46642         111    


Q ss_pred             cccccCCCCCCCeeEEEEcCCh-----------------------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          277 SHKIRGISETEEYDVVIANILL-----------------------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla-----------------------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                          ..+ ..++||+|++|+..                       ..+..++..+.++|||||++++.
T Consensus       113 ----~~~-~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  175 (259)
T 3lpm_A          113 ----DLI-PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV  175 (259)
T ss_dssp             ----GTS-CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----hhh-ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence                011 25789999999753                       23467889999999999999984

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.01  E-value=2.3e-09  Score=98.61  Aligned_cols=109  Identities=15%  Similarity=0.242  Sum_probs=82.6

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHHHhhh-cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLLRSLI-KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~-~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      ..+.++||.-+   ..|.|...++++.+.+ .++.+|||+||                    +|+++.+++.|++|++.+
T Consensus        80 ~~~~~~~~~~i---pr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~  156 (276)
T 2b3t_A           80 LPLFVSPATLI---PRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL  156 (276)
T ss_dssp             EEEECCTTSCC---CCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ceEEeCCCCcc---cCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            35667777543   2567777777776665 56789999999                    999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------  298 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------  298 (327)
                      ++.  ++++.  .+|..         +           .. ..++||+|++|+..                         
T Consensus       157 ~~~--~v~~~--~~d~~---------~-----------~~-~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~  211 (276)
T 2b3t_A          157 AIK--NIHIL--QSDWF---------S-----------AL-AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAAD  211 (276)
T ss_dssp             TCC--SEEEE--CCSTT---------G-----------GG-TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHH
T ss_pred             CCC--ceEEE--Ecchh---------h-----------hc-ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCC
Confidence            985  46664  56652         0           11 14689999999532                         


Q ss_pred             ---HHHHHHHHHHhhccCCCcEEEEe
Q 041970          299 ---NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       299 ---~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                         ..+..++..+.++|+|||++++.
T Consensus       212 ~g~~~~~~~l~~~~~~LkpgG~l~~~  237 (276)
T 2b3t_A          212 SGMADIVHIIEQSRNALVSGGFLLLE  237 (276)
T ss_dssp             HHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence               35677889999999999999885

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.98  E-value=1.7e-09  Score=98.91  Aligned_cols=92  Identities=13%  Similarity=0.057  Sum_probs=65.5

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCC---------------------------
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPK---------------------------  248 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~---------------------------  248 (327)
                      .+|++|||+||                   +|+++.+|+.|+++++.+....+                           
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            46789999999                   99999999999999877632100                           


Q ss_pred             cEE-EEecCCCCCCCCccccccchhhhcccccccCCC--CCCCeeEEEEcCChHHH-------HHHHHHHhhccCCCcEE
Q 041970          249 KMK-LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGIS--ETEEYDVVIANILLNPL-------LQLADHIVSYAKPGAVV  318 (327)
Q Consensus       249 ~v~-v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~--~~~~fDlVvANIla~vL-------~~L~p~i~~~LkpGG~L  318 (327)
                      ++. +.  .+|+.         +.         ..+.  ..++||+|+|+...+.+       ..++..+.++|||||+|
T Consensus       134 ~i~~~~--~~D~~---------~~---------~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~l  193 (263)
T 2a14_A          134 AVKRVL--KCDVH---------LG---------NPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHL  193 (263)
T ss_dssp             HEEEEE--ECCTT---------SS---------STTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hhheEE--ecccc---------CC---------CCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEE
Confidence            122 22  34542         00         0010  14589999999876643       57888999999999999


Q ss_pred             EEeeccCC
Q 041970          319 GISGILSE  326 (327)
Q Consensus       319 IlSGIl~~  326 (327)
                      ++++++.+
T Consensus       194 i~~~~~~~  201 (263)
T 2a14_A          194 VTTVTLRL  201 (263)
T ss_dssp             EEEEESSC
T ss_pred             EEEEeecC
Confidence            99997653

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.97  E-value=1e-09  Score=98.40  Aligned_cols=104  Identities=18%  Similarity=0.289  Sum_probs=77.8

Q ss_pred             CCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecC
Q 041970          196 GTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVP  256 (327)
Q Consensus       196 GTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~  256 (327)
                      |.|....++..++.+.. +.++.+|||+||                   +|+++.+++.|++|++.+++. +++++.  .
T Consensus        27 ~~~~~~~~~~~l~~l~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~--~  102 (257)
T 3f4k_A           27 GPGSPEATRKAVSFINE-LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA-DRVKGI--T  102 (257)
T ss_dssp             SSCCHHHHHHHHTTSCC-CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEE--E
T ss_pred             CCCCHHHHHHHHHHHhc-CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCC-CceEEE--E
Confidence            45556666666655542 356789999999                   999999999999999999987 567775  3


Q ss_pred             CCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH--HHHHHHHHHhhccCCCcEEEEeec
Q 041970          257 DRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       257 ~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~--vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      +|..         ++          .. +.++||+|++|-...  ....++..+.+.|||||+++++..
T Consensus       103 ~d~~---------~~----------~~-~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~  151 (257)
T 3f4k_A          103 GSMD---------NL----------PF-QNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEA  151 (257)
T ss_dssp             CCTT---------SC----------SS-CTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CChh---------hC----------CC-CCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            5541         10          11 257899999985432  256788999999999999999864

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.95  E-value=2.8e-09  Score=93.02  Aligned_cols=87  Identities=15%  Similarity=0.158  Sum_probs=69.6

Q ss_pred             hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      ++++.+|||+||                    +|+++.+++.|++|++.+++.  ++++.  .+|..         +   
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~--~~d~~---------~---  101 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVAR--NVTLV--EAFAP---------E---  101 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCT--TEEEE--ECCTT---------T---
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEE--eCChh---------h---
Confidence            457889999999                    999999999999999999984  57664  35542         0   


Q ss_pred             hcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          274 YLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                              .....++||+|++|.....+..++..+.+.|+|||+++++...
T Consensus       102 --------~~~~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          102 --------GLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             --------TCTTSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             --------hhhcCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence                    1111367999999987667788999999999999999998653

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.95  E-value=2e-09  Score=102.85  Aligned_cols=112  Identities=14%  Similarity=0.169  Sum_probs=89.3

Q ss_pred             CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-----------------ecCCHHHHHHHHHHHHhcCC
Q 041970          183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-----------------VDIDPQVIKSAHQNAALNNI  245 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-----------------VDIDp~AV~~A~eNa~lNgv  245 (327)
                      +...+.+||+.+|-+..|.+.++   .+.+++.+|++|||+||                 +|+++.|++.|++|+++|++
T Consensus       165 ~g~~f~~d~~~~~~~~~~~~er~---~i~~~~~~~~~VLDlg~G~G~~~l~a~~~~~V~~vD~s~~ai~~a~~n~~~n~l  241 (336)
T 2yx1_A          165 NGYRLWVDIAKVYFSPRLGGERA---RIMKKVSLNDVVVDMFAGVGPFSIACKNAKKIYAIDINPHAIELLKKNIKLNKL  241 (336)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHH---HHHHHCCTTCEEEETTCTTSHHHHHTTTSSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEehHHhccCCccHHHHH---HHHHhcCCCCEEEEccCccCHHHHhccCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            45678899999888888989987   34455678999999999                 99999999999999999998


Q ss_pred             CCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          246 GPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       246 ~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      . +++++.  .+|..                     ..  .++||+|++|+.... ..++..+.+.|+|||+++++..-
T Consensus       242 ~-~~v~~~--~~D~~---------------------~~--~~~fD~Vi~dpP~~~-~~~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          242 E-HKIIPI--LSDVR---------------------EV--DVKGNRVIMNLPKFA-HKFIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             T-TTEEEE--ESCGG---------------------GC--CCCEEEEEECCTTTG-GGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             C-CcEEEE--ECChH---------------------Hh--cCCCcEEEECCcHhH-HHHHHHHHHHcCCCCEEEEEEee
Confidence            6 467764  45542                     11  168999999976443 36788889999999999987653

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.95  E-value=1.7e-09  Score=98.27  Aligned_cols=104  Identities=17%  Similarity=0.208  Sum_probs=78.2

Q ss_pred             CCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecC
Q 041970          196 GTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVP  256 (327)
Q Consensus       196 GTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~  256 (327)
                      +.|..+.++.+++.+. .++++.+|||+||                   +|+++.+++.|++|++.+++. +++++.  .
T Consensus        27 ~~~~~~~~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~--~  102 (267)
T 3kkz_A           27 GPGSPEVTLKALSFID-NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ-NRVTGI--V  102 (267)
T ss_dssp             SSCCHHHHHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEE--E
T ss_pred             CCCCHHHHHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCC-cCcEEE--E
Confidence            3445566666666654 3467889999999                   999999999999999999986 567775  3


Q ss_pred             CCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH--HHHHHHHHhhccCCCcEEEEeec
Q 041970          257 DRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       257 ~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v--L~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      +|..         ++          .. +.++||+|+++-....  ...++..+.+.|||||+++++.+
T Consensus       103 ~d~~---------~~----------~~-~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          103 GSMD---------DL----------PF-RNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             CCTT---------SC----------CC-CTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             cChh---------hC----------CC-CCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence            5541         10          11 2578999999865433  46678899999999999999875

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.94  E-value=3.7e-09  Score=91.41  Aligned_cols=98  Identities=13%  Similarity=0.141  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      +.+.-.++...+++|++|||+||                     +|+++.+++.|++|++.+++. .++++.  .+|.. 
T Consensus         9 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~-   84 (197)
T 3eey_A            9 LGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI-DRVTLI--KDGHQ-   84 (197)
T ss_dssp             HHHHHHHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG-GGEEEE--CSCGG-
T ss_pred             HHHHHHHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCeEEE--ECCHH-
Confidence            44455556666788899999999                     999999999999999999985 467764  45541 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhccCCCcEEEEee
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                              ++.         .. ..++||+|++|...            .....++..+.+.|||||++++..
T Consensus        85 --------~~~---------~~-~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           85 --------NMD---------KY-IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             --------GGG---------GT-CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------HHh---------hh-ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence                    111         11 24689999999733            234568889999999999999874

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.94  E-value=2.2e-09  Score=102.36  Aligned_cols=110  Identities=18%  Similarity=0.269  Sum_probs=85.9

Q ss_pred             ceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc
Q 041970          184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      ...+...||+.+....++.++++++.+..  .++.+|||+||                    +|+++.+++.|++|++.|
T Consensus       166 ~~~~~~~~gvf~~~~~d~~~~~ll~~l~~--~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~  243 (343)
T 2pjd_A          166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTP--HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN  243 (343)
T ss_dssp             TEEEEECTTCTTSSSCCHHHHHHHHHSCT--TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT
T ss_pred             ceEEEecCCccCCCCCcHHHHHHHHhcCc--CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh
Confidence            35678899997767778899999888742  35679999999                    999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--------HHHHHHHHHHhhccCCC
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------NPLLQLADHIVSYAKPG  315 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------~vL~~L~p~i~~~LkpG  315 (327)
                      ++. .  ++.  .+|..                     .. ..++||+|++|...        .....++..+.++||||
T Consensus       244 ~~~-~--~~~--~~d~~---------------------~~-~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkpg  296 (343)
T 2pjd_A          244 GVE-G--EVF--ASNVF---------------------SE-VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSG  296 (343)
T ss_dssp             TCC-C--EEE--ECSTT---------------------TT-CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEE
T ss_pred             CCC-C--EEE--Ecccc---------------------cc-ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCC
Confidence            986 2  332  34542                     01 14689999999753        34577899999999999


Q ss_pred             cEEEEee
Q 041970          316 AVVGISG  322 (327)
Q Consensus       316 G~LIlSG  322 (327)
                      |.+++.+
T Consensus       297 G~l~i~~  303 (343)
T 2pjd_A          297 GELRIVA  303 (343)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEE
Confidence            9999864

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.92  E-value=9.7e-09  Score=93.35  Aligned_cols=102  Identities=17%  Similarity=0.308  Sum_probs=76.6

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      +...|..+... .++++|||+||                     +|+++.+++.|++|++.+++. +++++.  .+|.. 
T Consensus        51 ~~~~l~~l~~~-~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~-~~v~~~--~~d~~-  125 (248)
T 3tfw_A           51 QGQFLALLVRL-TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD-QRVTLR--EGPAL-  125 (248)
T ss_dssp             HHHHHHHHHHH-HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT-TTEEEE--ESCHH-
T ss_pred             HHHHHHHHHhh-cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEE--EcCHH-
Confidence            33444444333 46789999999                     999999999999999999987 578875  35531 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeeccC
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                              +.+        ......++||+|+++........++..+.++|||||+|++..++-
T Consensus       126 --------~~l--------~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~  173 (248)
T 3tfw_A          126 --------QSL--------ESLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVVR  173 (248)
T ss_dssp             --------HHH--------HTCCSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred             --------HHH--------HhcCCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence                    111        112123589999999887777788999999999999999988763

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.91  E-value=1.3e-09  Score=103.08  Aligned_cols=117  Identities=16%  Similarity=0.269  Sum_probs=82.7

Q ss_pred             EcCCCCCceeEEEccCcccCCCchhh-HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHH
Q 041970          177 VPEWNVQATNIILNPGLAFGTGEHAT-TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIK  234 (327)
Q Consensus       177 ~P~W~~~~~~I~idPG~AFGTG~H~T-T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~  234 (327)
                      .|.|+.  ..+.+++|++|   .||+ ++.+++.+.  +.+|++|||+||                     +|+++.+++
T Consensus        72 ~p~~~~--~~~~~~~~~~~---~~~~~~~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~  144 (336)
T 2b25_A           72 RPALED--YVVLMKRGTAI---TFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHD  144 (336)
T ss_dssp             CCCHHH--HHHHSCCSSCC---CCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHH
T ss_pred             CCCHHH--HhhhhcCCCcc---cCHHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHH
Confidence            566642  33558899998   4666 888998884  578999999999                     999999999


Q ss_pred             HHHHHHHh-------cCCC--CCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970          235 SAHQNAAL-------NNIG--PKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA  305 (327)
Q Consensus       235 ~A~eNa~l-------Ngv~--~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~  305 (327)
                      .|++|++.       |++.  .+++++.  .+|..         +..        ..+ ..++||+|++|+.....  ++
T Consensus       145 ~a~~~~~~~~~~~~ln~~~~~~~~v~~~--~~d~~---------~~~--------~~~-~~~~fD~V~~~~~~~~~--~l  202 (336)
T 2b25_A          145 LAKKNYKHWRDSWKLSHVEEWPDNVDFI--HKDIS---------GAT--------EDI-KSLTFDAVALDMLNPHV--TL  202 (336)
T ss_dssp             HHHHHHHHHHHHHTTTCSSCCCCCEEEE--ESCTT---------CCC----------------EEEEEECSSSTTT--TH
T ss_pred             HHHHHHHHhhcccccccccccCCceEEE--ECChH---------Hcc--------ccc-CCCCeeEEEECCCCHHH--HH
Confidence            99999984       5553  1356664  45542         000        011 14579999999864432  67


Q ss_pred             HHHhhccCCCcEEEEee
Q 041970          306 DHIVSYAKPGAVVGISG  322 (327)
Q Consensus       306 p~i~~~LkpGG~LIlSG  322 (327)
                      +.+.+.|+|||+|++..
T Consensus       203 ~~~~~~LkpgG~lv~~~  219 (336)
T 2b25_A          203 PVFYPHLKHGGVCAVYV  219 (336)
T ss_dssp             HHHGGGEEEEEEEEEEE
T ss_pred             HHHHHhcCCCcEEEEEe
Confidence            88999999999998753

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.91  E-value=5.9e-09  Score=92.28  Aligned_cols=88  Identities=24%  Similarity=0.428  Sum_probs=65.6

Q ss_pred             HHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcccccc
Q 041970          210 LRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVD  269 (327)
Q Consensus       210 Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~  269 (327)
                      +...+++|++|||+||                    +|+|+.+++.|++|++.|++   ++++.  .+|..         
T Consensus        49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~--~~d~~---------  114 (230)
T 3evz_A           49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS---NVRLV--KSNGG---------  114 (230)
T ss_dssp             HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC---CCEEE--ECSSC---------
T ss_pred             hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC---CcEEE--eCCch---------
Confidence            4555677788888888                    99999999999999999987   35554  35531         


Q ss_pred             chhhhcccccccCCCCCCCeeEEEEcCCh----------------------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          270 GIVEYLSSHKIRGISETEEYDVVIANILL----------------------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       270 ~l~~~~~~~~~~~~~~~~~fDlVvANIla----------------------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      .+         ..+ ..++||+|++|+..                      ..+..++..+.++|||||++++.
T Consensus       115 ~~---------~~~-~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          115 II---------KGV-VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             SS---------TTT-CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hh---------hhc-ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence            00         012 14789999999653                      22477889999999999999873

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.90  E-value=4.1e-09  Score=94.66  Aligned_cols=88  Identities=15%  Similarity=0.204  Sum_probs=70.8

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .++++|||+||                    +|+++.+++.|++|++.+++. +++++.  .+|..         +..  
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~---------~~~--  135 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFE-NQVRII--EGNAL---------EQF--  135 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCT-TTEEEE--ESCGG---------GCH--
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEE--ECCHH---------HHH--
Confidence            46789999999                    999999999999999999986 568775  45542         111  


Q ss_pred             ccccccc-CCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          275 LSSHKIR-GISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       275 ~~~~~~~-~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                            . ..  .++||+|+++.....+..++..+.+.|||||+|++..++
T Consensus       136 ------~~~~--~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d~~~  178 (232)
T 3ntv_A          136 ------ENVN--DKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVL  178 (232)
T ss_dssp             ------HHHT--TSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred             ------Hhhc--cCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence                  0 01  468999999987777788999999999999999997665

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.89  E-value=4.5e-09  Score=94.18  Aligned_cols=98  Identities=18%  Similarity=0.230  Sum_probs=73.1

Q ss_pred             hhHHHHHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      |.+...++.+.+.  +.++.+|||+||                   +|+++.+++.|++|++.+++. +++++.  .+|.
T Consensus        19 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~v~~~--~~d~   95 (256)
T 1nkv_A           19 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS-ERVHFI--HNDA   95 (256)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEE--ESCC
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-cceEEE--ECCh
Confidence            4444455555444  357889999999                   999999999999999999986 467765  3554


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEee
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      .         +            ....++||+|+++-....   ...++..+.++|||||+++++.
T Consensus        96 ~---------~------------~~~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A           96 A---------G------------YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             T---------T------------CCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             H---------h------------CCcCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            2         1            111468999999755433   4677889999999999999874

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.89  E-value=3.4e-09  Score=95.41  Aligned_cols=104  Identities=14%  Similarity=0.221  Sum_probs=80.0

Q ss_pred             hhHHHHHHHHHhhhc--CCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCC
Q 041970          201 ATTKLCLLLLRSLIK--GGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPD  257 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~--~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~  257 (327)
                      |.+...|.+|.+...  ++.+|||+||                     +|+++.+++.|++|++.+|+..+++++.  .+
T Consensus        39 ~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~--~g  116 (221)
T 3dr5_A           39 EMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFL--LS  116 (221)
T ss_dssp             HHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEE--CS
T ss_pred             HHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEE--Ec
Confidence            566777777776643  2249999999                     9999999999999999999863578875  45


Q ss_pred             CCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          258 RTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       258 d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      |..         +.+.        .. ..++||+|+++........++..+.++|||||++++..++
T Consensus       117 da~---------~~l~--------~~-~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~  165 (221)
T 3dr5_A          117 RPL---------DVMS--------RL-ANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADAL  165 (221)
T ss_dssp             CHH---------HHGG--------GS-CTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred             CHH---------HHHH--------Hh-cCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            542         1110        11 1468999999987777778899999999999999998765

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.89  E-value=2.4e-09  Score=89.70  Aligned_cols=111  Identities=12%  Similarity=0.100  Sum_probs=72.3

Q ss_pred             eEEEccCcccCCCchhhHHHHHHHHHhh----hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhc
Q 041970          186 NIILNPGLAFGTGEHATTKLCLLLLRSL----IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       186 ~I~idPG~AFGTG~H~TT~lcLe~Le~~----~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      .+...||      ..||+....+.+-+.    +.++++|||+||                  +|+++.+++.|++|++.+
T Consensus        13 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~   86 (171)
T 1ws6_A           13 ALKVPAS------ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRT   86 (171)
T ss_dssp             EECCCTT------CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHH
T ss_pred             EecCCCC------CCCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHc
Confidence            4555666      445555444444333    327889999999                  999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-HHHHHHHHHHh--hccCCCcEEEE
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-NPLLQLADHIV--SYAKPGAVVGI  320 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-~vL~~L~p~i~--~~LkpGG~LIl  320 (327)
                      ++   ++++.  .+|..         +....       .....++||+|++|... .....++..+.  ++|+|||++++
T Consensus        87 ~~---~~~~~--~~d~~---------~~~~~-------~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~  145 (171)
T 1ws6_A           87 GL---GARVV--ALPVE---------VFLPE-------AKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVL  145 (171)
T ss_dssp             TC---CCEEE--CSCHH---------HHHHH-------HHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEE
T ss_pred             CC---ceEEE--eccHH---------HHHHh-------hhccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEE
Confidence            87   35553  45531         11100       00013479999999643 23334445555  99999999998


Q ss_pred             eec
Q 041970          321 SGI  323 (327)
Q Consensus       321 SGI  323 (327)
                      +--
T Consensus       146 ~~~  148 (171)
T 1ws6_A          146 QHP  148 (171)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            754

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.89  E-value=7.5e-09  Score=91.33  Aligned_cols=106  Identities=15%  Similarity=0.268  Sum_probs=77.6

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      +.+...+..+... .++++|||+||                     +|+++.+++.|++|++.+++. +++++.  .+|.
T Consensus        44 ~~~~~~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~--~~d~  119 (223)
T 3duw_A           44 PTQGKFLQLLVQI-QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN-DRVEVR--TGLA  119 (223)
T ss_dssp             HHHHHHHHHHHHH-HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEE--ESCH
T ss_pred             HHHHHHHHHHHHh-hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEE--EcCH
Confidence            4445555555443 46789999999                     999999999999999999987 568775  3554


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeeccC
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                      .         +.....     .. ...++||+|+++........++..+.++|+|||++++.+++-
T Consensus       120 ~---------~~~~~~-----~~-~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~  170 (223)
T 3duw_A          120 L---------DSLQQI-----EN-EKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVR  170 (223)
T ss_dssp             H---------HHHHHH-----HH-TTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred             H---------HHHHHH-----Hh-cCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            1         111000     00 002579999999887777888999999999999999987653

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.88  E-value=6.3e-09  Score=97.21  Aligned_cols=109  Identities=18%  Similarity=0.355  Sum_probs=78.9

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHHHhhhc--CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhc
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIK--GGELFLDYGT-------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~--~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      ..+.++||.-+   ..|.|...++++.+.+.  ++.+|||+||                   +|+++.|++.|++|++.|
T Consensus        93 ~~~~v~~~~li---pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~  169 (284)
T 1nv8_A           93 LSFLVEEGVFV---PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH  169 (284)
T ss_dssp             EEEECCTTSCC---CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             eEEEeCCCcee---cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            45666776643   34667777776665543  6789999999                   999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCe---eEEEEcCCh-------------HHH------
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEY---DVVIANILL-------------NPL------  301 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~f---DlVvANIla-------------~vL------  301 (327)
                      ++. +++++.  .+|..         +           .+  .++|   |+|++|+..             ++.      
T Consensus       170 ~l~-~~v~~~--~~D~~---------~-----------~~--~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~  224 (284)
T 1nv8_A          170 GVS-DRFFVR--KGEFL---------E-----------PF--KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGG  224 (284)
T ss_dssp             TCT-TSEEEE--ESSTT---------G-----------GG--GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCT
T ss_pred             CCC-CceEEE--ECcch---------h-----------hc--ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCC
Confidence            986 567775  46652         0           01  2467   999999532             111      


Q ss_pred             ---HHHHHHHh-hccCCCcEEEEe
Q 041970          302 ---LQLADHIV-SYAKPGAVVGIS  321 (327)
Q Consensus       302 ---~~L~p~i~-~~LkpGG~LIlS  321 (327)
                         ..+...+. +.++|||+|++.
T Consensus       225 ~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          225 EDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             TTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             CcHHHHHHHHHHhcCCCCCEEEEE
Confidence               15677888 999999999873

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.87  E-value=5.2e-09  Score=88.35  Aligned_cols=87  Identities=13%  Similarity=0.051  Sum_probs=66.0

Q ss_pred             hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      ..++++|||+||                    +|+++.+++.|++|++.+++. +++ +.  .+|..        +.+. 
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~-~~--~~d~~--------~~~~-   89 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS-DRI-AV--QQGAP--------RAFD-   89 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT-TSE-EE--ECCTT--------GGGG-
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC-CCE-EE--ecchH--------hhhh-
Confidence            357789999999                    999999999999999999986 456 43  34431        1110 


Q ss_pred             hcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          274 YLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                              .  ..++||+|+++..... ..++..+.+.|+|||+++++.+.
T Consensus        90 --------~--~~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           90 --------D--VPDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             --------G--CCSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             --------c--cCCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEeec
Confidence                    0  1268999999876544 66888999999999999998753

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.87  E-value=4.4e-09  Score=97.41  Aligned_cols=113  Identities=12%  Similarity=0.114  Sum_probs=83.6

Q ss_pred             CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHh
Q 041970          183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAAL  242 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~l  242 (327)
                      ....+.++|+..|=+-...+.++.+   ...+.+|++|||+||                    +|+++.|++.|++|+++
T Consensus        89 ~g~~f~~~~~~~f~~~~~~~e~~~~---~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~  165 (272)
T 3a27_A           89 YGCLFKLDVAKIMWSQGNIEERKRM---AFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL  165 (272)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHHHH---HTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCEEEEEechhEEECCCchHHHHHH---HHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            3467889998776555555544432   233678899999999                    99999999999999999


Q ss_pred             cCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970          243 NNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       243 Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      |++.  ++.+.  .+|..         +            ....++||+|++|... -+..++..+.+.|+|||++++|.
T Consensus       166 n~l~--~~~~~--~~d~~---------~------------~~~~~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~  219 (272)
T 3a27_A          166 NKLN--NVIPI--LADNR---------D------------VELKDVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHE  219 (272)
T ss_dssp             TTCS--SEEEE--ESCGG---------G------------CCCTTCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cCCC--CEEEE--ECChH---------H------------cCccCCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEE
Confidence            9986  35553  45542         1            1114589999999886 34456778889999999999987


Q ss_pred             cc
Q 041970          323 IL  324 (327)
Q Consensus       323 Il  324 (327)
                      ..
T Consensus       220 ~~  221 (272)
T 3a27_A          220 TV  221 (272)
T ss_dssp             EE
T ss_pred             cC
Confidence            54

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.87  E-value=1.1e-08  Score=89.93  Aligned_cols=101  Identities=15%  Similarity=0.250  Sum_probs=74.1

Q ss_pred             chhhHHHHHHHHHhhh--cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCC---CcEEEE
Q 041970          199 EHATTKLCLLLLRSLI--KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGP---KKMKLH  253 (327)
Q Consensus       199 ~H~TT~lcLe~Le~~~--~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~---~~v~v~  253 (327)
                      .|+.....++++.+.+  .++.+|||+||                    +|+++.+++.|++|+..+++..   .++++.
T Consensus        10 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~   89 (219)
T 3jwg_A           10 KLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLF   89 (219)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEE
T ss_pred             CCcchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEE
Confidence            4777788888887765  46789999999                    9999999999999999888751   156664


Q ss_pred             ecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEe
Q 041970          254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                        .+|+.         ..          .. ..++||+|+++-..     ..+..++..+.+.|||||+++..
T Consensus        90 --~~d~~---------~~----------~~-~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~  140 (219)
T 3jwg_A           90 --QSSLV---------YR----------DK-RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST  140 (219)
T ss_dssp             --ECCSS---------SC----------CG-GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             --eCccc---------cc----------cc-ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence              35541         00          01 24689999998543     24467889999999999976653

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.84  E-value=6.5e-09  Score=88.04  Aligned_cols=100  Identities=18%  Similarity=0.267  Sum_probs=75.1

Q ss_pred             hhHHHHHHHHHhh--hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970          201 ATTKLCLLLLRSL--IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       201 ~TT~lcLe~Le~~--~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~  260 (327)
                      +++....+++.+.  ..++.+|||+||                  +|+++.+++.|++|++.+++. .++.+.  .+|..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~--~~d~~   92 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLG-DNVTLM--EGDAP   92 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC-TTEEEE--ESCHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCC-cceEEE--ecCHH
Confidence            5555555555444  357789999999                  999999999999999999984 456664  34431


Q ss_pred             CCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                               +.           +...++||+|+++...+.+..++..+.+.|+|||+++++..
T Consensus        93 ---------~~-----------~~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           93 ---------EA-----------LCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             ---------HH-----------HTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ---------Hh-----------cccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEec
Confidence                     10           11125899999998766678899999999999999998753

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.84  E-value=3.5e-09  Score=92.49  Aligned_cols=102  Identities=13%  Similarity=0.227  Sum_probs=70.6

Q ss_pred             cccCCCchhhHHHHHHHHHhh--hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEE
Q 041970          193 LAFGTGEHATTKLCLLLLRSL--IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKL  252 (327)
Q Consensus       193 ~AFGTG~H~TT~lcLe~Le~~--~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v  252 (327)
                      ..+|.|.+.+.......+.+.  .+++++|||+||                  +|+++.+++.|++|++.+++.  ++++
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~v~~  129 (210)
T 3lbf_A           52 LPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLH--NVST  129 (210)
T ss_dssp             EECTTSCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCC--SEEE
T ss_pred             cccCCCCEeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCC--ceEE
Confidence            344555544444444444433  357889999999                  999999999999999999885  4666


Q ss_pred             EecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          253 HLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       253 ~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      .  .+|..         +           .....++||+|++|-....+   .+.+.+.|||||+++++
T Consensus       130 ~--~~d~~---------~-----------~~~~~~~~D~i~~~~~~~~~---~~~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          130 R--HGDGW---------Q-----------GWQARAPFDAIIVTAAPPEI---PTALMTQLDEGGILVLP  173 (210)
T ss_dssp             E--ESCGG---------G-----------CCGGGCCEEEEEESSBCSSC---CTHHHHTEEEEEEEEEE
T ss_pred             E--ECCcc---------c-----------CCccCCCccEEEEccchhhh---hHHHHHhcccCcEEEEE
Confidence            4  35542         0           11124689999998543322   24678999999999886

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.83  E-value=1.7e-08  Score=88.73  Aligned_cols=96  Identities=13%  Similarity=0.166  Sum_probs=69.4

Q ss_pred             HHHHHHHHhhh--cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCC---CcEEEEecCCC
Q 041970          204 KLCLLLLRSLI--KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGP---KKMKLHLVPDR  258 (327)
Q Consensus       204 ~lcLe~Le~~~--~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~---~~v~v~~~~~d  258 (327)
                      +.-++++.+.+  .++.+|||+||                    +|+++.+++.|++|++.+++..   .++++.  .+|
T Consensus        15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~--~~d   92 (217)
T 3jwh_A           15 QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLI--QGA   92 (217)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEE--ECC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEE--eCC
Confidence            34444444443  46789999999                    9999999999999999888751   157764  355


Q ss_pred             CCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEe
Q 041970          259 TFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       259 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      +.         ..          .. ..++||+|+++-..+     .+..++..+.+.|||||+++..
T Consensus        93 ~~---------~~----------~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~  140 (217)
T 3jwh_A           93 LT---------YQ----------DK-RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT  140 (217)
T ss_dssp             TT---------SC----------CG-GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             cc---------cc----------cc-cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            41         00          01 146899999986543     5578899999999999987764

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.83  E-value=1.5e-08  Score=89.41  Aligned_cols=104  Identities=16%  Similarity=0.207  Sum_probs=75.6

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      +...+..+... .++++|||+||                     +|+++.+++.|++|++.+++. +++++.  .+|.. 
T Consensus        52 ~~~~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~-  126 (225)
T 3tr6_A           52 QAQLLALLVKL-MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS-DKIGLR--LSPAK-  126 (225)
T ss_dssp             HHHHHHHHHHH-HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEE--ESCHH-
T ss_pred             HHHHHHHHHHh-hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEE--eCCHH-
Confidence            33444444433 46779999999                     999999999999999999987 568775  34531 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                              +.....     ..-...++||+|+.+........++..+.++|||||+|++..++
T Consensus       127 --------~~~~~~-----~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          127 --------DTLAEL-----IHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             --------HHHHHH-----HTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             --------HHHHHh-----hhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence                    111000     00000168999999988777888899999999999999998775

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.82  E-value=9.9e-09  Score=95.54  Aligned_cols=94  Identities=21%  Similarity=0.293  Sum_probs=73.3

Q ss_pred             HHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970          207 LLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN  265 (327)
Q Consensus       207 Le~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~  265 (327)
                      .+.|...++++.+|||+||                     +|+++.+++.|++|++.+++. +++++.  .+|..     
T Consensus       109 ~~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~-----  180 (305)
T 3ocj_A          109 RRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA-GQITLH--RQDAW-----  180 (305)
T ss_dssp             HHHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEE--ECCGG-----
T ss_pred             HHHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC-CceEEE--ECchh-----
Confidence            3566666788999999999                     999999999999999999986 577775  35542     


Q ss_pred             ccccchhhhcccccccCCCCCCCeeEEEEcCChH------HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                          +            ....++||+|++|....      ....++..+.+.|||||+|+++.+.
T Consensus       181 ----~------------~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  229 (305)
T 3ocj_A          181 ----K------------LDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLT  229 (305)
T ss_dssp             ----G------------CCCCSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ----c------------CCccCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence                1            11137899999986432      2335789999999999999998754

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.82  E-value=1.5e-08  Score=87.83  Aligned_cols=75  Identities=19%  Similarity=0.192  Sum_probs=58.0

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH---HH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---LL  302 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~  302 (327)
                      +|+++.+++.|++|++.+++. .++++.  .+|..         ++          .+ +.++||+|++|-..+.   ..
T Consensus        72 ~D~s~~~~~~a~~~~~~~~~~-~~~~~~--~~d~~---------~~----------~~-~~~~~D~v~~~~~l~~~~~~~  128 (219)
T 3dlc_A           72 LDFSKHMNEIALKNIADANLN-DRIQIV--QGDVH---------NI----------PI-EDNYADLIVSRGSVFFWEDVA  128 (219)
T ss_dssp             EESCHHHHHHHHHHHHHTTCT-TTEEEE--ECBTT---------BC----------SS-CTTCEEEEEEESCGGGCSCHH
T ss_pred             EECCHHHHHHHHHHHHhcccc-CceEEE--EcCHH---------HC----------CC-CcccccEEEECchHhhccCHH
Confidence            999999999999999999986 567765  34431         10          11 2578999999975443   36


Q ss_pred             HHHHHHhhccCCCcEEEEeec
Q 041970          303 QLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       303 ~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      .++..+.+.|+|||+++++..
T Consensus       129 ~~l~~~~~~L~pgG~l~~~~~  149 (219)
T 3dlc_A          129 TAFREIYRILKSGGKTYIGGG  149 (219)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCCCEEEEEec
Confidence            788999999999999999864

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.81  E-value=1.1e-08  Score=89.04  Aligned_cols=80  Identities=16%  Similarity=0.145  Sum_probs=63.8

Q ss_pred             CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          216 GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       216 ~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      ++.+|||+||                    +|+++.+++.|++|++.+++. + +++.  .+|..               
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~-v~~~--~~d~~---------------  125 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-N-IEPV--QSRVE---------------  125 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-S-EEEE--ECCTT---------------
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-C-eEEE--ecchh---------------
Confidence            4789999999                    999999999999999999886 3 6664  45542               


Q ss_pred             ccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          276 SSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                            .....++||+|++|... .+..++..+.+.|+|||++++.
T Consensus       126 ------~~~~~~~~D~i~~~~~~-~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          126 ------EFPSEPPFDGVISRAFA-SLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             ------TSCCCSCEEEEECSCSS-SHHHHHHHHTTSEEEEEEEEEE
T ss_pred             ------hCCccCCcCEEEEeccC-CHHHHHHHHHHhcCCCcEEEEE
Confidence                  11124689999999764 4567889999999999999875

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.81  E-value=9.2e-09  Score=97.79  Aligned_cols=83  Identities=17%  Similarity=0.241  Sum_probs=68.0

Q ss_pred             hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      +++|++||||||                    +|+||.+++.|++|++..|+  +++++.  .+|..         +   
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl--~~v~~v--~gDa~---------~---  183 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV--DGVNVI--TGDET---------V---  183 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC--CSEEEE--ESCGG---------G---
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC--CCeEEE--ECchh---------h---
Confidence            568889999999                    99999999999999999988  467775  45642         1   


Q ss_pred             hcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970          274 YLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                               +. .++||+|+.+.......++++.+.+.|||||+|++..
T Consensus       184 ---------l~-d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          184 ---------ID-GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             ---------GG-GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             ---------CC-CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEc
Confidence                     11 4689999988776666788999999999999999764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.81  E-value=2.9e-08  Score=88.00  Aligned_cols=101  Identities=13%  Similarity=0.240  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      +...+..+... .++++|||+||                     +|+++.+++.|++|++.+++. +++++.  .+|.. 
T Consensus        46 ~~~~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~-  120 (221)
T 3u81_A           46 KGQIMDAVIRE-YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ-DKVTIL--NGASQ-  120 (221)
T ss_dssp             HHHHHHHHHHH-HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEE--ESCHH-
T ss_pred             HHHHHHHHHHh-cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CceEEE--ECCHH-
Confidence            33334444333 46789999999                     999999999999999999986 578875  45531 


Q ss_pred             CCccccccchhhhcccccccCCC---CCCCeeEEEEcCChHHHH---HHHHHHhhccCCCcEEEEeeccC
Q 041970          262 SSMNERVDGIVEYLSSHKIRGIS---ETEEYDVVIANILLNPLL---QLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~---~~~~fDlVvANIla~vL~---~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                              +.+.        ...   ..++||+|+++.......   .++..+ ++|||||+|+++.+..
T Consensus       121 --------~~l~--------~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~  173 (221)
T 3u81_A          121 --------DLIP--------QLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV  173 (221)
T ss_dssp             --------HHGG--------GTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred             --------HHHH--------HHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence                    1110        111   126899999998654443   344455 9999999999987753

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.81  E-value=1.1e-08  Score=94.83  Aligned_cols=106  Identities=16%  Similarity=0.127  Sum_probs=70.0

Q ss_pred             hhhHHHHHHHHHhhh--cCCCeeeeeee-------------------ecC-CHHHHHHHHHHHHhc-----CCCC---Cc
Q 041970          200 HATTKLCLLLLRSLI--KGGELFLDYGT-------------------VDI-DPQVIKSAHQNAALN-----NIGP---KK  249 (327)
Q Consensus       200 H~TT~lcLe~Le~~~--~~g~~VLDvGc-------------------VDI-Dp~AV~~A~eNa~lN-----gv~~---~~  249 (327)
                      .|.|..+.+++.+..  .+|++|||+||                   +|+ ++.+++.|++|+++|     ++..   ++
T Consensus        61 ~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~  140 (281)
T 3bzb_A           61 WSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRAS  140 (281)
T ss_dssp             -CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CC
T ss_pred             ecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCC
Confidence            345899999998875  57889999999                   999 999999999999555     4320   13


Q ss_pred             EEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEE-cCChH--HHHHHHHHHhhccC---C--CcEEEEe
Q 041970          250 MKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIA-NILLN--PLLQLADHIVSYAK---P--GAVVGIS  321 (327)
Q Consensus       250 v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvA-NIla~--vL~~L~p~i~~~Lk---p--GG~LIlS  321 (327)
                      +++..  .+..     .....+..        .+ ..++||+|++ +++.+  .+..+++.+.++|+   |  ||++++.
T Consensus       141 v~~~~--~~~~-----~~~~~~~~--------~~-~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          141 PKVVP--YRWG-----DSPDSLQR--------CT-GLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             CEEEE--CCTT-----SCTHHHHH--------HH-SCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             eEEEE--ecCC-----CccHHHHh--------hc-cCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence            44431  1210     00011100        00 1468999997 76643  36788999999999   9  9976553

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.80  E-value=2.9e-08  Score=90.86  Aligned_cols=98  Identities=11%  Similarity=0.023  Sum_probs=72.8

Q ss_pred             hhHHHHHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      +..+..++.+.+.  +.+|.+|||+||                   +|+++.+++.|+++++.+++. .++++.  .+|.
T Consensus        47 ~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~-~~~~~~--~~d~  123 (287)
T 1kpg_A           47 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL-RSKRVL--LAGW  123 (287)
T ss_dssp             HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCC-SCEEEE--ESCG
T ss_pred             HHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCC-CCeEEE--ECCh
Confidence            3444444444444  357889999999                   999999999999999998876 467764  3443


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .                     .+  .++||+|+++-..+     ....++..+.+.|||||+++++.+.
T Consensus       124 ~---------------------~~--~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  170 (287)
T 1kpg_A          124 E---------------------QF--DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  170 (287)
T ss_dssp             G---------------------GC--CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             h---------------------hC--CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            1                     12  26899999985433     3467889999999999999998754

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.80  E-value=2.7e-08  Score=87.18  Aligned_cols=98  Identities=19%  Similarity=0.152  Sum_probs=74.1

Q ss_pred             hhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          200 HATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       200 H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      ....+..++.+.+++.++.+|||+||                  +|+++.+++.|++|++.++.   ++++.  .+|.. 
T Consensus        22 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~--~~d~~-   95 (227)
T 1ve3_A           22 RSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRES---NVEFI--VGDAR-   95 (227)
T ss_dssp             HHHHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---CCEEE--ECCTT-
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC---CceEE--ECchh-
Confidence            35566777777777777899999999                  99999999999999998872   35554  35542 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCC--h---HHHHHHHHHHhhccCCCcEEEEee
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL--L---NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl--a---~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                              ++          .. +.++||+|++|-.  .   .....++..+.+.|+|||++++..
T Consensus        96 --------~~----------~~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  142 (227)
T 1ve3_A           96 --------KL----------SF-EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF  142 (227)
T ss_dssp             --------SC----------CS-CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------cC----------CC-CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence                    00          11 2468999999865  2   234678899999999999998864

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.80  E-value=5.9e-09  Score=95.72  Aligned_cols=91  Identities=12%  Similarity=0.130  Sum_probs=65.1

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHh---cCCCCCcEEEEecCCCCCCCCccccccch
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAAL---NNIGPKKMKLHLVPDRTFPSSMNERVDGI  271 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~l---Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l  271 (327)
                      .++.+|||+||                    +|+++.+++.|++|++.   |++. +++++.  .+|..         +.
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~-~~v~~~--~~D~~---------~~  102 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFS-ARIEVL--EADVT---------LR  102 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTG-GGEEEE--ECCTT---------CC
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCc-ceEEEE--eCCHH---------HH
Confidence            46779999999                    99999999999999999   9886 577775  46652         11


Q ss_pred             hhhcccccccCCCCCCCeeEEEEcCChHH---------------------HHHHHHHHhhccCCCcEEEEe
Q 041970          272 VEYLSSHKIRGISETEEYDVVIANILLNP---------------------LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       272 ~~~~~~~~~~~~~~~~~fDlVvANIla~v---------------------L~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ...   .....+ ..++||+|++|+....                     +..++..+.++|||||+|++.
T Consensus       103 ~~~---~~~~~~-~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  169 (260)
T 2ozv_A          103 AKA---RVEAGL-PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI  169 (260)
T ss_dssp             HHH---HHHTTC-CTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhh---hhhhcc-CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence            000   000011 2468999999964321                     567888899999999999873

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.79  E-value=2.3e-08  Score=92.02  Aligned_cols=104  Identities=16%  Similarity=0.174  Sum_probs=76.1

Q ss_pred             CchhhHHHHHHHHHhhh------cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEE
Q 041970          198 GEHATTKLCLLLLRSLI------KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKL  252 (327)
Q Consensus       198 G~H~TT~lcLe~Le~~~------~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v  252 (327)
                      ..++..+..++.+.+.+      .++.+|||+||                   +|+++.+++.|+++++.+++. +++++
T Consensus        58 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~  136 (297)
T 2o57_A           58 EIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA-DNITV  136 (297)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT-TTEEE
T ss_pred             chHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEE
Confidence            33444555555554444      57889999999                   999999999999999999986 56776


Q ss_pred             EecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEeecc
Q 041970          253 HLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       253 ~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .  .+|..         ++          .+ +.++||+|+++-....   ...++..+.+.|||||+|+++...
T Consensus       137 ~--~~d~~---------~~----------~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          137 K--YGSFL---------EI----------PC-EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM  189 (297)
T ss_dssp             E--ECCTT---------SC----------SS-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             E--EcCcc---------cC----------CC-CCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence            5  35542         10          11 2568999999854322   467889999999999999998653

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.79  E-value=6.7e-09  Score=93.86  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=29.8

Q ss_pred             CCeeEEEEcCCh------------HHHHHHHHHHhhccCCCcEEEEee
Q 041970          287 EEYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       287 ~~fDlVvANIla------------~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      .+||+|++|+..            +.+..++..+.++|+|||++++++
T Consensus       167 ~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  214 (250)
T 1o9g_A          167 SAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTD  214 (250)
T ss_dssp             CCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeC
Confidence            479999999642            445688899999999999999864

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.79  E-value=1.3e-08  Score=90.43  Aligned_cols=94  Identities=14%  Similarity=0.118  Sum_probs=69.7

Q ss_pred             HHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcccc
Q 041970          206 CLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNER  267 (327)
Q Consensus       206 cLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~  267 (327)
                      ..+++.....++.+|||+||                  +|+++.+++.|++|++.++.. .++++.  .+|..       
T Consensus        56 l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~-------  125 (235)
T 3lcc_A           56 IVHLVDTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKA-EYFSFV--KEDVF-------  125 (235)
T ss_dssp             HHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGG-GGEEEE--CCCTT-------
T ss_pred             HHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCC-cceEEE--ECchh-------
Confidence            34555554445569999999                  999999999999999876554 467764  45652       


Q ss_pred             ccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeec
Q 041970          268 VDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       268 ~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                                    .....++||+|+++-..     .....++..+.+.|||||+|++...
T Consensus       126 --------------~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  172 (235)
T 3lcc_A          126 --------------TWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY  172 (235)
T ss_dssp             --------------TCCCSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             --------------cCCCCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence                          11125589999998643     2556788999999999999998654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.77  E-value=2.4e-08  Score=88.95  Aligned_cols=89  Identities=15%  Similarity=0.253  Sum_probs=68.4

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .++++|||+||                    +|+++.+++.|++|++.+++. +++++.  .+|..         +... 
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~---------~~~~-  119 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLE-SRIELL--FGDAL---------QLGE-  119 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCT-TTEEEE--CSCGG---------GSHH-
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEE--ECCHH---------HHHH-
Confidence            46778888888                    999999999999999999986 567764  45542         1100 


Q ss_pred             cccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          275 LSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                             .....++||+|+++........++..+.+.|+|||+++++.+
T Consensus       120 -------~~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          120 -------KLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             -------HHTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             -------hcccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence                   000136899999998776677888999999999999999854

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.76  E-value=3.9e-08  Score=86.99  Aligned_cols=92  Identities=15%  Similarity=0.158  Sum_probs=69.4

Q ss_pred             HHHHHHHHhhhcCCCeeeeeee-----------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          204 KLCLLLLRSLIKGGELFLDYGT-----------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       204 ~lcLe~Le~~~~~g~~VLDvGc-----------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      +-.++++.+++.++.+|||+||                 +|+++.+++.|++|+..++.   ++++.  .+|..      
T Consensus        21 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~--~~d~~------   89 (243)
T 3d2l_A           21 PEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNR---HVDFW--VQDMR------   89 (243)
T ss_dssp             HHHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTTC---CCEEE--ECCGG------
T ss_pred             HHHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcCC---ceEEE--EcChh------
Confidence            4456677777888899999999                 99999999999999988773   34553  34431      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEEEcC--C-----hHHHHHHHHHHhhccCCCcEEEEe
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVIANI--L-----LNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANI--l-----a~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                         +            ....++||+|+++.  +     ...+..++..+.++|+|||+++++
T Consensus        90 ---~------------~~~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           90 ---E------------LELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             ---G------------CCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---h------------cCCCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence               1            11146899999974  2     144567888999999999999984

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.75  E-value=2.5e-08  Score=87.51  Aligned_cols=100  Identities=18%  Similarity=0.213  Sum_probs=74.1

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      +.+...+..+... .++++|||+||                     +|+++.+++.|++|++.+++. +++++.  .+|.
T Consensus        42 ~~~~~~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~--~~d~  117 (210)
T 3c3p_A           42 RQTGRLLYLLARI-KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI-DRVELQ--VGDP  117 (210)
T ss_dssp             HHHHHHHHHHHHH-HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG-GGEEEE--ESCH
T ss_pred             HHHHHHHHHHHHh-hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-ceEEEE--EecH
Confidence            3445555555443 35779999999                     999999999999999999886 567775  3443


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .         +..        ...  .+ ||+|+++........++..+.++|||||++++..++
T Consensus       118 ~---------~~~--------~~~--~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  162 (210)
T 3c3p_A          118 L---------GIA--------AGQ--RD-IDILFMDCDVFNGADVLERMNRCLAKNALLIAVNAL  162 (210)
T ss_dssp             H---------HHH--------TTC--CS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred             H---------HHh--------ccC--CC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEECcc
Confidence            1         111        011  35 999999976666778889999999999999986543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.75  E-value=3.4e-08  Score=86.36  Aligned_cols=97  Identities=19%  Similarity=0.270  Sum_probs=67.8

Q ss_pred             chhhHH-HHHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCC
Q 041970          199 EHATTK-LCLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPD  257 (327)
Q Consensus       199 ~H~TT~-lcLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~  257 (327)
                      .++..+ ...+++...+  .++.+|||+||                  +|+++.+++.|++|+..++    ++++.  .+
T Consensus        31 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~--~~  104 (216)
T 3ofk_A           31 DNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWS----HISWA--AT  104 (216)
T ss_dssp             TCHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCS----SEEEE--EC
T ss_pred             cCHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCC----CeEEE--Ec
Confidence            344444 3333444333  35579999999                  9999999999999987653    46654  35


Q ss_pred             CCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------HHHHHHHHHHhhccCCCcEEEEee
Q 041970          258 RTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       258 d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      |..                     .....++||+|++|-..      ..+..++..+.+.|||||+++++-
T Consensus       105 d~~---------------------~~~~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          105 DIL---------------------QFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             CTT---------------------TCCCSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             chh---------------------hCCCCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            542                     11135789999998543      334677899999999999999864

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.74  E-value=8.6e-09  Score=97.13  Aligned_cols=108  Identities=17%  Similarity=0.257  Sum_probs=79.3

Q ss_pred             eE-EEccCcccCCCchhhHH-HHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHh
Q 041970          186 NI-ILNPGLAFGTGEHATTK-LCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAAL  242 (327)
Q Consensus       186 ~I-~idPG~AFGTG~H~TT~-lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~l  242 (327)
                      .+ .+++|.+|.+..+|... .+++.+.  +++|++|||+||                     +|+++.+++.|++|++.
T Consensus        45 ~~~~l~~~~f~q~~~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~  122 (317)
T 1dl5_A           45 VLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER  122 (317)
T ss_dssp             CEEEEECSSCEEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CcccccCCCcceeccCHHHHHHHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            45 78999888888877643 3333332  467899999999                     99999999999999999


Q ss_pred             cCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970          243 NNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       243 Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      +++. + +++.  .+|..         +           .....++||+|+++...+.+.   ..+.+.|||||+++++-
T Consensus       123 ~g~~-~-v~~~--~~d~~---------~-----------~~~~~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          123 LGIE-N-VIFV--CGDGY---------Y-----------GVPEFSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             TTCC-S-EEEE--ESCGG---------G-----------CCGGGCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEB
T ss_pred             cCCC-C-eEEE--ECChh---------h-----------ccccCCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEEE
Confidence            9986 3 6664  34531         1           011246899999997654332   57788999999999974

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.74  E-value=5e-08  Score=88.28  Aligned_cols=99  Identities=18%  Similarity=0.292  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhhh--cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSLI--KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~~--~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      .+..++.+.+.+  .++.+|||+||                   +|+++.+++.|+++++.+++. +++.+.  .+|.. 
T Consensus        46 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~--~~d~~-  121 (273)
T 3bus_A           46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA-NRVTFS--YADAM-  121 (273)
T ss_dssp             HHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEE--ECCTT-
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEE--ECccc-
Confidence            444444444443  57889999999                   999999999999999999986 567765  35542 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                              ++          .. +.++||+|+++-...   ....++..+.+.|||||+++++.+.
T Consensus       122 --------~~----------~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A          122 --------DL----------PF-EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             --------SC----------CS-CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             --------cC----------CC-CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence                    10          11 256899999985432   2467889999999999999998754

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.74  E-value=3.3e-08  Score=87.06  Aligned_cols=75  Identities=15%  Similarity=0.077  Sum_probs=55.8

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------  299 (327)
                      +|+++.+++.|++|++.+++.  ++.+.  .+|..         ++.        ..+ ..++||+|++|....      
T Consensus        71 vD~s~~~l~~a~~~~~~~~~~--~v~~~--~~d~~---------~~~--------~~~-~~~~~D~i~~~~~~~~~~~~~  128 (214)
T 1yzh_A           71 IDIQKSVLSYALDKVLEVGVP--NIKLL--WVDGS---------DLT--------DYF-EDGEIDRLYLNFSDPWPKKRH  128 (214)
T ss_dssp             EESCHHHHHHHHHHHHHHCCS--SEEEE--ECCSS---------CGG--------GTS-CTTCCSEEEEESCCCCCSGGG
T ss_pred             EEcCHHHHHHHHHHHHHcCCC--CEEEE--eCCHH---------HHH--------hhc-CCCCCCEEEEECCCCccccch
Confidence            999999999999999999984  46664  45642         110        001 256899999997532      


Q ss_pred             -----HHHHHHHHHhhccCCCcEEEEee
Q 041970          300 -----PLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       300 -----vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                           ....++..+.++|+|||+++++.
T Consensus       129 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~  156 (214)
T 1yzh_A          129 EKRRLTYKTFLDTFKRILPENGEIHFKT  156 (214)
T ss_dssp             GGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence                 23568889999999999998864

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.74  E-value=3.9e-08  Score=91.78  Aligned_cols=86  Identities=12%  Similarity=0.031  Sum_probs=67.1

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      +++.+|||+||                   +|+++.+++.|++|++.+++. +++++.  .+|..         ++    
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~---------~~----  179 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRID-DHVRSR--VCNML---------DT----  179 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEE--ECCTT---------SC----
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CceEEE--ECChh---------cC----
Confidence            46789999999                   999999999999999999987 567775  35542         00    


Q ss_pred             ccccccCCCCCCCeeEEEEcCChHH--HHHHHHHHhhccCCCcEEEEeec
Q 041970          276 SSHKIRGISETEEYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~v--L~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                            .+ +.++||+|+++-..+.  ...++..+.++|||||++++...
T Consensus       180 ------~~-~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          180 ------PF-DKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             ------CC-CTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------CC-CCCCEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence                  11 2578999999854322  67788999999999999998764

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.74  E-value=6.9e-08  Score=89.90  Aligned_cols=95  Identities=11%  Similarity=0.050  Sum_probs=71.7

Q ss_pred             HHHHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCC
Q 041970          204 KLCLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPS  262 (327)
Q Consensus       204 ~lcLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~  262 (327)
                      +..++.+.+.  +.+|.+|||+||                   +|+++.+++.|+++++.+++. +++++.  .+|..  
T Consensus        76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~--  150 (318)
T 2fk8_A           76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTN-RSRQVL--LQGWE--  150 (318)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCS-SCEEEE--ESCGG--
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEE--ECChH--
Confidence            3444444443  257889999999                   999999999999999999886 567764  34431  


Q ss_pred             CccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          263 SMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       263 ~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                                         .+  .++||+|+++-..     .....++..+.+.|||||+++++.+.
T Consensus       151 -------------------~~--~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  196 (318)
T 2fk8_A          151 -------------------DF--AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  196 (318)
T ss_dssp             -------------------GC--CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             -------------------HC--CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence                               12  3689999998543     34577889999999999999998764

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.73  E-value=3.6e-08  Score=88.28  Aligned_cols=99  Identities=11%  Similarity=0.196  Sum_probs=73.5

Q ss_pred             chhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970          199 EHATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       199 ~H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~  260 (327)
                      +||.-...++++.  ++++.+|||+||                  +|+++.+++.|++|++.+++.  ++.+.  .+|..
T Consensus         6 ~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~--~~d~~   79 (239)
T 1xxl_A            6 HHHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVE--NVRFQ--QGTAE   79 (239)
T ss_dssp             CHHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCC--SEEEE--ECBTT
T ss_pred             cCCCcchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC--CeEEE--ecccc
Confidence            3555555555554  567899999999                  999999999999999999875  46654  34431


Q ss_pred             CCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeec
Q 041970          261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                               ++          .. ..++||+|+++-..+   ....++..+.+.|||||++++...
T Consensus        80 ---------~~----------~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           80 ---------SL----------PF-PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             ---------BC----------CS-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---------cC----------CC-CCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEc
Confidence                     11          11 257899999996543   246788899999999999998754

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.73  E-value=1e-08  Score=95.35  Aligned_cols=36  Identities=31%  Similarity=0.475  Sum_probs=30.4

Q ss_pred             CCCeeEEEEcCCh---H------HHHHHHHHHhhccCCCcEEEEe
Q 041970          286 TEEYDVVIANILL---N------PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       286 ~~~fDlVvANIla---~------vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      .++||+|+|+-..   +      .+..++..+.++|+|||+|++.
T Consensus       175 ~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~  219 (292)
T 3g07_A          175 TPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLE  219 (292)
T ss_dssp             CCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            5789999998765   2      4567899999999999999985

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.73  E-value=2.8e-08  Score=91.03  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=68.9

Q ss_pred             HHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcccccc
Q 041970          208 LLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVD  269 (327)
Q Consensus       208 e~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~  269 (327)
                      +++..+..++.+|||+||                  +|+++.+++.|+++++.+++. .++++.  .+|..         
T Consensus        60 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~---------  127 (285)
T 4htf_A           60 RVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVS-DNMQFI--HCAAQ---------  127 (285)
T ss_dssp             HHHHHTCSSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCG-GGEEEE--ESCGG---------
T ss_pred             HHHHhcCCCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC-cceEEE--EcCHH---------
Confidence            344444455779999999                  999999999999999999985 467764  34541         


Q ss_pred             chhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeec
Q 041970          270 GIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       270 ~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      ++         ... ..++||+|+++-..+   ....++..+.++|||||+++++..
T Consensus       128 ~~---------~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          128 DV---------ASH-LETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             GT---------GGG-CSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             Hh---------hhh-cCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            11         001 257899999986543   236788999999999999998753

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.73  E-value=2.3e-08  Score=89.86  Aligned_cols=85  Identities=18%  Similarity=0.173  Sum_probs=64.5

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .++.+|||+||                    +|+++.+++.|++|++.+++.  ++++.  .+|.         .++.  
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~--~~d~---------~~~~--  133 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE--NTTFC--HDRA---------ETFG--  133 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS--SEEEE--ESCH---------HHHT--
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEE--eccH---------HHhc--
Confidence            46789999999                    999999999999999999985  36664  3443         1110  


Q ss_pred             cccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          275 LSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                            ......++||+|+++...+ +..++..+.++|+|||++++.
T Consensus       134 ------~~~~~~~~fD~V~~~~~~~-~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          134 ------QRKDVRESYDIVTARAVAR-LSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             ------TCTTTTTCEEEEEEECCSC-HHHHHHHHGGGEEEEEEEEEE
T ss_pred             ------ccccccCCccEEEEeccCC-HHHHHHHHHHhcCCCCEEEEE
Confidence                  0000146899999998644 677889999999999999875

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.73  E-value=4.3e-08  Score=89.83  Aligned_cols=92  Identities=12%  Similarity=0.140  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSM  264 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~  264 (327)
                      .+..++.+...  ++.+|||+||                  +|+++.+++.|++|++.+++   ++++.  .+|..    
T Consensus       109 ~~~~~~~~~~~--~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~--~~d~~----  177 (286)
T 3m70_A          109 HGDVVDAAKII--SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL---NISTA--LYDIN----  177 (286)
T ss_dssp             CHHHHHHHHHS--CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---CEEEE--ECCGG----
T ss_pred             HHHHHHHhhcc--CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC---ceEEE--Eeccc----
Confidence            34555666533  6889999999                  99999999999999999987   35554  35541    


Q ss_pred             cccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEee
Q 041970          265 NERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                                       .....++||+|++|...     ..+..++..+.++|+|||++++..
T Consensus       178 -----------------~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          178 -----------------AANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             -----------------GCCCCSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -----------------cccccCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                             11125789999999653     345678999999999999977654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.72  E-value=2.9e-08  Score=83.54  Aligned_cols=99  Identities=14%  Similarity=0.115  Sum_probs=74.9

Q ss_pred             CCchhhHHHHHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecC
Q 041970          197 TGEHATTKLCLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVP  256 (327)
Q Consensus       197 TG~H~TT~lcLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~  256 (327)
                      .|.++++....+++.+.+  .++.+|||+||                  +|+++.+++.|++|++.|++.  ++++.  .
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~--~   89 (183)
T 2yxd_A           14 EGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIK--NCQII--K   89 (183)
T ss_dssp             TTBCCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCC--SEEEE--E
T ss_pred             cCCCcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEE--E
Confidence            345677777777666654  46789999999                  999999999999999999984  46664  3


Q ss_pred             CCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          257 DRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       257 ~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      +|..         +           .+ +.++||+|++|.. ..+..++..+.+.  |||+++++..
T Consensus        90 ~d~~---------~-----------~~-~~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A           90 GRAE---------D-----------VL-DKLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             SCHH---------H-----------HG-GGCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             CCcc---------c-----------cc-cCCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEec
Confidence            4431         1           01 1368999999988 6667778888777  9999998753

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.72  E-value=1.1e-07  Score=82.29  Aligned_cols=85  Identities=20%  Similarity=0.216  Sum_probs=64.7

Q ss_pred             hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          214 IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       214 ~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      +.++ +|||+||                  +|+++.+++.|++|++.++.   ++.+.  .+|..         +.    
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~--~~d~~---------~~----   88 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV---KITTV--QSNLA---------DF----   88 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC---CEEEE--CCBTT---------TB----
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC---ceEEE--EcChh---------hc----
Confidence            4567 9999999                  99999999999999998876   35553  34542         00    


Q ss_pred             ccccccCCCCCCCeeEEEEcCCh---HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          276 SSHKIRGISETEEYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla---~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                            .. +.++||+|+++...   .....++..+.+.|+|||+++++...
T Consensus        89 ------~~-~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A           89 ------DI-VADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             ------SC-CTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             ------CC-CcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence                  11 24689999998542   45677889999999999999998653

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.72  E-value=7.6e-09  Score=89.40  Aligned_cols=100  Identities=14%  Similarity=0.119  Sum_probs=53.7

Q ss_pred             hhhHHHHHHHHHhhh---cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecC
Q 041970          200 HATTKLCLLLLRSLI---KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVP  256 (327)
Q Consensus       200 H~TT~lcLe~Le~~~---~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~  256 (327)
                      .|.|...++++.+.+   .++.+|||+||                    +|+++.+++.|++|++.+++   ++++.  .
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~--~   85 (215)
T 4dzr_A           11 RPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA---VVDWA--A   85 (215)
T ss_dssp             CHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------CC--H
T ss_pred             CccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC---ceEEE--E
Confidence            377788888777776   57889999999                    99999999999999999876   24432  3


Q ss_pred             CCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh---H--------------------------HHHHHHHH
Q 041970          257 DRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL---N--------------------------PLLQLADH  307 (327)
Q Consensus       257 ~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla---~--------------------------vL~~L~p~  307 (327)
                      +|..         +....       .....++||+|++|...   .                          .+..++..
T Consensus        86 ~d~~---------~~~~~-------~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  149 (215)
T 4dzr_A           86 ADGI---------EWLIE-------RAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAAL  149 (215)
T ss_dssp             HHHH---------HHHHH-------HHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTC
T ss_pred             cchH---------hhhhh-------hhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHH
Confidence            3321         11000       00013789999999642   1                          12667788


Q ss_pred             HhhccCCCcE-EEE
Q 041970          308 IVSYAKPGAV-VGI  320 (327)
Q Consensus       308 i~~~LkpGG~-LIl  320 (327)
                      +.++|||||+ +++
T Consensus       150 ~~~~LkpgG~l~~~  163 (215)
T 4dzr_A          150 PPYVLARGRAGVFL  163 (215)
T ss_dssp             CGGGBCSSSEEEEE
T ss_pred             HHHHhcCCCeEEEE
Confidence            8999999999 444

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.72  E-value=6e-08  Score=88.37  Aligned_cols=90  Identities=23%  Similarity=0.299  Sum_probs=68.2

Q ss_pred             HhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccch
Q 041970          211 RSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGI  271 (327)
Q Consensus       211 e~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l  271 (327)
                      ..++.++.+|||+||                   +|+++.+++.|++|+..+++. .++.+.  .+|..         +.
T Consensus        59 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~---------~~  126 (298)
T 1ri5_A           59 RLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR-FKVFFR--AQDSY---------GR  126 (298)
T ss_dssp             HHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS-SEEEEE--ESCTT---------TS
T ss_pred             HHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ccEEEE--ECCcc---------cc
Confidence            344577889999999                   999999999999999988875 456664  35542         00


Q ss_pred             hhhcccccccCCCCCCCeeEEEEcCCh-------HHHHHHHHHHhhccCCCcEEEEee
Q 041970          272 VEYLSSHKIRGISETEEYDVVIANILL-------NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       272 ~~~~~~~~~~~~~~~~~fDlVvANIla-------~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                                .....++||+|+++-..       .....++..+.+.|||||+++++.
T Consensus       127 ----------~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          127 ----------HMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             ----------CCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ----------ccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                      11125689999998543       345678899999999999999874

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.72  E-value=1.6e-08  Score=90.48  Aligned_cols=104  Identities=17%  Similarity=0.296  Sum_probs=73.2

Q ss_pred             cCcccCCCchhhHHHHHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCc
Q 041970          191 PGLAFGTGEHATTKLCLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKK  249 (327)
Q Consensus       191 PG~AFGTG~H~TT~lcLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~  249 (327)
                      ....|+.|.+.+...+...+.+.  ..++++|||+||                   +|+++.+++.|++|++.+++.  +
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~  141 (235)
T 1jg1_A           64 EPLPIPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK--N  141 (235)
T ss_dssp             SCEECSTTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC--S
T ss_pred             CCcccCCCceeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC--C
Confidence            34567777776555555544444  357889999999                   999999999999999999885  3


Q ss_pred             EEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          250 MKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       250 v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      +++.  .+|..        .            .+....+||+|+++.....   +.+.+.+.|+|||+++++
T Consensus       142 v~~~--~~d~~--------~------------~~~~~~~fD~Ii~~~~~~~---~~~~~~~~L~pgG~lvi~  188 (235)
T 1jg1_A          142 VHVI--LGDGS--------K------------GFPPKAPYDVIIVTAGAPK---IPEPLIEQLKIGGKLIIP  188 (235)
T ss_dssp             EEEE--ESCGG--------G------------CCGGGCCEEEEEECSBBSS---CCHHHHHTEEEEEEEEEE
T ss_pred             cEEE--ECCcc--------c------------CCCCCCCccEEEECCcHHH---HHHHHHHhcCCCcEEEEE
Confidence            6654  34421        0            1112346999999865432   234778999999999886

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.71  E-value=1.5e-08  Score=92.83  Aligned_cols=75  Identities=15%  Similarity=0.229  Sum_probs=55.8

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA  305 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~  305 (327)
                      +|+++.+++.|++|++.+++. + +++.  .+++         .++.        ......++||+|+++..++ +..++
T Consensus       110 vD~s~~~~~~a~~~~~~~~l~-~-v~~~--~~d~---------~~~~--------~~~~~~~~fD~I~s~a~~~-~~~ll  167 (249)
T 3g89_A          110 VDATRKKVAFVERAIEVLGLK-G-ARAL--WGRA---------EVLA--------REAGHREAYARAVARAVAP-LCVLS  167 (249)
T ss_dssp             EESCHHHHHHHHHHHHHHTCS-S-EEEE--ECCH---------HHHT--------TSTTTTTCEEEEEEESSCC-HHHHH
T ss_pred             EECCHHHHHHHHHHHHHhCCC-c-eEEE--ECcH---------HHhh--------cccccCCCceEEEECCcCC-HHHHH
Confidence            999999999999999999986 3 6664  3553         1111        0000136899999998865 46788


Q ss_pred             HHHhhccCCCcEEEE-ee
Q 041970          306 DHIVSYAKPGAVVGI-SG  322 (327)
Q Consensus       306 p~i~~~LkpGG~LIl-SG  322 (327)
                      ..+.++|||||++++ .|
T Consensus       168 ~~~~~~LkpgG~l~~~~g  185 (249)
T 3g89_A          168 ELLLPFLEVGGAAVAMKG  185 (249)
T ss_dssp             HHHGGGEEEEEEEEEEEC
T ss_pred             HHHHHHcCCCeEEEEEeC
Confidence            899999999998765 55

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.71  E-value=5e-08  Score=96.50  Aligned_cols=109  Identities=23%  Similarity=0.326  Sum_probs=77.8

Q ss_pred             ceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCC
Q 041970          184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNI  245 (327)
Q Consensus       184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv  245 (327)
                      ...+.++|+..|-+....+.++.-.+++  +.++++|||+||                  +|+++.|++.|++|++.|++
T Consensus       260 g~~f~~~~~~F~q~n~~~~e~l~~~~~~--~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl  337 (425)
T 2jjq_A          260 DVDYLIHPNSFFQTNSYQAVNLVRKVSE--LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV  337 (425)
T ss_dssp             TEEEEECTTSCCCSBHHHHHHHHHHHHH--HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEEccccccccCHHHHHHHHHHhhc--cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            4678899997666655555444444444  678899999999                  99999999999999999998


Q ss_pred             CCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHH-HHHHHHHhhccCCCcEEEEee
Q 041970          246 GPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL-LQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       246 ~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL-~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      .   +++.  .+|+.         +            .. ..+||+|++|+...-+ ..++..+. .|+|||.+++|-
T Consensus       338 ~---v~~~--~~d~~---------~------------~~-~~~fD~Vv~dPPr~g~~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          338 D---AEFE--VASDR---------E------------VS-VKGFDTVIVDPPRAGLHPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             C---EEEE--ECCTT---------T------------CC-CTTCSEEEECCCTTCSCHHHHHHHH-HHCCSEEEEEES
T ss_pred             c---EEEE--ECChH---------H------------cC-ccCCCEEEEcCCccchHHHHHHHHH-hcCCCcEEEEEC
Confidence            4   5654  45542         1            11 2279999999874322 22444443 489999999983

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.70  E-value=1.1e-08  Score=93.15  Aligned_cols=104  Identities=18%  Similarity=0.253  Sum_probs=76.3

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      +...|..|... .++++|||+||                     +|+++.+++.|++|++.+|+. +++++.  .+|.. 
T Consensus        48 ~~~~l~~l~~~-~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~--~gda~-  122 (242)
T 3r3h_A           48 QAQFMQMLIRL-TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE-HKIKLR--LGPAL-  122 (242)
T ss_dssp             HHHHHHHHHHH-HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT-TTEEEE--ESCHH-
T ss_pred             HHHHHHHHHhh-cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEE--EcCHH-
Confidence            34444444443 45789999999                     999999999999999999997 578875  35541 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                              +.+...     ..-...++||+|+++........++..+.++|+|||+|++..++
T Consensus       123 --------~~l~~~-----~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~  172 (242)
T 3r3h_A          123 --------DTLHSL-----LNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIF  172 (242)
T ss_dssp             --------HHHHHH-----HHHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             --------HHHHHH-----hhccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence                    111000     00000368999999988777788899999999999999998775

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.69  E-value=4.1e-08  Score=88.31  Aligned_cols=84  Identities=21%  Similarity=0.344  Sum_probs=65.9

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      +.+|++|||+||                     +|+++.+++.|++|++.+++. +++++.  .+|..         +  
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~---------~--  156 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD-DRVTIK--LKDIY---------E--  156 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT-TTEEEE--CSCGG---------G--
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC-CceEEE--ECchh---------h--
Confidence            457889999999                     999999999999999999986 567764  45542         0  


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                               .+ +.++||+|++|+...  ..++..+.+.|+|||++++...
T Consensus       157 ---------~~-~~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~  195 (255)
T 3mb5_A          157 ---------GI-EEENVDHVILDLPQP--ERVVEHAAKALKPGGFFVAYTP  195 (255)
T ss_dssp             ---------CC-CCCSEEEEEECSSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred             ---------cc-CCCCcCEEEECCCCH--HHHHHHHHHHcCCCCEEEEEEC
Confidence                     11 256799999997643  3567888999999999998753

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.69  E-value=3.1e-08  Score=89.38  Aligned_cols=85  Identities=18%  Similarity=0.200  Sum_probs=65.6

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .++.+|||+||                  +|+++.+++.|+++++.+++.  ++.+.  .+|..         ++     
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~v~~~--~~d~~---------~l-----   97 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQ--QVEYV--QGDAE---------QM-----   97 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEE--ECCC----------CC-----
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEE--EecHH---------hC-----
Confidence            46789999999                  999999999999999999875  46654  35541         10     


Q ss_pred             cccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEeec
Q 041970          277 SHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                           .+ +.++||+|++|-..+.   ...++..+.+.|||||+|+++..
T Consensus        98 -----~~-~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A           98 -----PF-TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             -----CS-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----CC-CCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence                 11 2578999999965432   35788999999999999998743

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.68  E-value=8.7e-09  Score=90.42  Aligned_cols=93  Identities=16%  Similarity=0.354  Sum_probs=67.8

Q ss_pred             HHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCC---CcEEEEecCCCCCCCCcccc
Q 041970          209 LLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGP---KKMKLHLVPDRTFPSSMNER  267 (327)
Q Consensus       209 ~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~---~~v~v~~~~~d~~~~~~~g~  267 (327)
                      .+.++++++.+|||+||                  +|+++.+++.|++|++.+++..   +++.+.  .+|..       
T Consensus        23 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~d~~-------   93 (235)
T 3sm3_A           23 IIHNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFK--VENAS-------   93 (235)
T ss_dssp             THHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEE--ECCTT-------
T ss_pred             HHHHhCCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEE--Eeccc-------
Confidence            45555667788888888                  9999999999999998887731   245554  34431       


Q ss_pred             ccchhhhcccccccCCCCCCCeeEEEEcCChH------HHHHHHHHHhhccCCCcEEEEeec
Q 041970          268 VDGIVEYLSSHKIRGISETEEYDVVIANILLN------PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       268 ~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                        ++          .. ..++||+|+++-...      ....++..+.+.|||||+++++..
T Consensus        94 --~~----------~~-~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A           94 --SL----------SF-HDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             --SC----------CS-CTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --cc----------CC-CCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence              00          11 257899999986533      233788999999999999999854

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.68  E-value=4.3e-08  Score=86.65  Aligned_cols=101  Identities=18%  Similarity=0.241  Sum_probs=72.7

Q ss_pred             HHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970          206 CLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSM  264 (327)
Q Consensus       206 cLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~  264 (327)
                      .+..+.+. .++++|||+||                     +|+++.+++.|++|++.+++. +++++.  .+|..    
T Consensus        60 ~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~i~~~--~~d~~----  131 (229)
T 2avd_A           60 LLANLARL-IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-HKIDLR--LKPAL----  131 (229)
T ss_dssp             HHHHHHHH-TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-TTEEEE--ESCHH----
T ss_pred             HHHHHHHh-cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-CeEEEE--EcCHH----
Confidence            33444333 46779999999                     999999999999999999986 567775  35531    


Q ss_pred             cccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          265 NERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                           +.....     ..-...++||+|+++........++..+.++|+|||++++..++
T Consensus       132 -----~~~~~~-----~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  181 (229)
T 2avd_A          132 -----ETLDEL-----LAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVL  181 (229)
T ss_dssp             -----HHHHHH-----HHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             -----HHHHHH-----HhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence                 111000     00000168999999988777778889999999999999997765

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.68  E-value=8e-08  Score=87.68  Aligned_cols=105  Identities=14%  Similarity=0.252  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      +...+..+.+. .++++|||+||                     +|+++.+++.|++|++.+|+. +++++.  .+|.. 
T Consensus        67 ~~~ll~~l~~~-~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~i~~~--~gda~-  141 (247)
T 1sui_A           67 EGQFLSMLLKL-INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-HKIDFR--EGPAL-  141 (247)
T ss_dssp             HHHHHHHHHHH-TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-GGEEEE--ESCHH-
T ss_pred             HHHHHHHHHHh-hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCeEEE--ECCHH-
Confidence            33444444443 35679999999                     999999999999999999985 678875  35541 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                              +.+....   .... ..++||+|+++........++..+.++|||||++++..++
T Consensus       142 --------~~l~~l~---~~~~-~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~  192 (247)
T 1sui_A          142 --------PVLDEMI---KDEK-NHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTL  192 (247)
T ss_dssp             --------HHHHHHH---HSGG-GTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred             --------HHHHHHH---hccC-CCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence                    1110000   0000 1368999999987666778889999999999999987654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.67  E-value=5.4e-08  Score=87.92  Aligned_cols=92  Identities=15%  Similarity=0.187  Sum_probs=69.0

Q ss_pred             hhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          200 HATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       200 H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      .......+++|.+...++.+|||+||                  +|+++.+++.|++++.       ++++.  .+|.. 
T Consensus        34 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~--~~d~~-  103 (263)
T 3pfg_A           34 HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP-------DAVLH--HGDMR-  103 (263)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT-------TSEEE--ECCTT-
T ss_pred             HHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-------CCEEE--ECChH-
Confidence            34456677778777777889999999                  9999999999999853       24443  35542 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcC-Ch------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANI-LL------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANI-la------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                                          .....++||+|+++. ..      ..+..++..+.++|||||+|+++
T Consensus       104 --------------------~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          104 --------------------DFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             --------------------TCCCSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             --------------------HCCccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                                111257899999985 22      34567889999999999999996

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.67  E-value=3.5e-08  Score=89.19  Aligned_cols=105  Identities=11%  Similarity=0.171  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      +...|..+... .++++|||+||                     +|+++.+++.|++|++.+|+. +++++.  .+|.. 
T Consensus        58 ~~~~l~~l~~~-~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~--~gda~-  132 (237)
T 3c3y_A           58 AGQLMSFVLKL-VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE-HKINFI--ESDAM-  132 (237)
T ss_dssp             HHHHHHHHHHH-TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEE--ESCHH-
T ss_pred             HHHHHHHHHHh-hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEE--EcCHH-
Confidence            33444444443 35678999988                     999999999999999999985 678875  35542 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                              +.+....   .... ..++||+|+++........++..+.++|+|||++++..++
T Consensus       133 --------~~l~~l~---~~~~-~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~~  183 (237)
T 3c3y_A          133 --------LALDNLL---QGQE-SEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTL  183 (237)
T ss_dssp             --------HHHHHHH---HSTT-CTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred             --------HHHHHHH---hccC-CCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence                    1110000   0000 1368999999987777788899999999999999997654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.67  E-value=6.4e-08  Score=85.40  Aligned_cols=93  Identities=13%  Similarity=0.156  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSM  264 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~  264 (327)
                      .+...+++.....++.+|||+||                  +|+++.+++.|++|+..++.   ++.+.  .+|..    
T Consensus        24 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~---~~~~~--~~d~~----   94 (246)
T 1y8c_A           24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL---KPRLA--CQDIS----   94 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC---CCEEE--CCCGG----
T ss_pred             HHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC---CeEEE--ecccc----
Confidence            33444555444346789999999                  99999999999999988875   24553  34531    


Q ss_pred             cccccchhhhcccccccCCCCCCCeeEEEEcC-Ch------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          265 NERVDGIVEYLSSHKIRGISETEEYDVVIANI-LL------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANI-la------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                           +            ....++||+|+++- ..      .....++..+.+.|+|||+++++
T Consensus        95 -----~------------~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           95 -----N------------LNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             -----G------------CCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -----c------------CCccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                 1            11136899999975 32      34677889999999999999985

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.67  E-value=5e-08  Score=87.48  Aligned_cols=98  Identities=15%  Similarity=0.206  Sum_probs=69.2

Q ss_pred             cCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          215 KGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       215 ~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      .++++|||+||                     +|+++.+++.|++|++.+++. +++++.  .+|..         +...
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~--~~d~~---------~~~~  126 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE-NKIFLK--LGSAL---------ETLQ  126 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEE--ESCHH---------HHHH
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCEEEE--ECCHH---------HHHH
Confidence            46778888888                     999999999999999999986 567765  34531         1100


Q ss_pred             hcc----cccc-cCCCCC-CCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          274 YLS----SHKI-RGISET-EEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       274 ~~~----~~~~-~~~~~~-~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      ...    ...+ ..+... ++||+|+++.....+..++..+.+.|+|||++++..++
T Consensus       127 ~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  183 (239)
T 2hnk_A          127 VLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVL  183 (239)
T ss_dssp             HHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             HHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEccc
Confidence            000    0000 001101 68999999987777778899999999999999998643

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.65  E-value=1.2e-08  Score=92.11  Aligned_cols=56  Identities=18%  Similarity=0.093  Sum_probs=41.0

Q ss_pred             hhHHHHHHHHHhhhc----CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecC
Q 041970          201 ATTKLCLLLLRSLIK----GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVP  256 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~----~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~  256 (327)
                      |.|...++.+.+.+.    ++.+|||+||                    +|+++.+++.|++|++.|++. +++++.  .
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~--~  122 (254)
T 2h00_A           46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVV--K  122 (254)
T ss_dssp             HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEE--E
T ss_pred             HHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCC-ccEEEE--E
Confidence            444444444433332    5679999999                    999999999999999999986 567775  3


Q ss_pred             CCC
Q 041970          257 DRT  259 (327)
Q Consensus       257 ~d~  259 (327)
                      +|.
T Consensus       123 ~d~  125 (254)
T 2h00_A          123 VPQ  125 (254)
T ss_dssp             CCT
T ss_pred             cch
Confidence            553

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.65  E-value=6.1e-08  Score=87.06  Aligned_cols=102  Identities=21%  Similarity=0.280  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      +...+..+... .++++|||+||                     +|+++.+++.|++|++.+++. +++++.  .++.. 
T Consensus        60 ~~~~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~--~~d~~-  134 (232)
T 3cbg_A           60 QAQFLGLLISL-TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA-EKISLR--LGPAL-  134 (232)
T ss_dssp             HHHHHHHHHHH-HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEE--ESCHH-
T ss_pred             HHHHHHHHHHh-cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEE--EcCHH-
Confidence            44444444433 45779999999                     999999999999999999986 577775  34431 


Q ss_pred             CCccccccchhhhcccccccCCCCC--CCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISET--EEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~--~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                              +.+...      .. ..  ++||+|+++........++..+.++|+|||++++..++
T Consensus       135 --------~~l~~l------~~-~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  184 (232)
T 3cbg_A          135 --------ATLEQL------TQ-GKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVL  184 (232)
T ss_dssp             --------HHHHHH------HT-SSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred             --------HHHHHH------Hh-cCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence                    111000      00 12  68999999987777788899999999999999997654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.64  E-value=1.1e-07  Score=81.26  Aligned_cols=82  Identities=17%  Similarity=0.273  Sum_probs=61.0

Q ss_pred             CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccc
Q 041970          216 GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSS  277 (327)
Q Consensus       216 ~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~  277 (327)
                      ++.+|||+||                  +|+++.+++.|++|++.+++.  ++++.  .+|..         ++      
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~--~~d~~---------~~------   92 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLD--NLHTR--VVDLN---------NL------   92 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCT--TEEEE--ECCGG---------GC------
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCC--CcEEE--Ecchh---------hC------
Confidence            4557777777                  999999999999999999874  36654  34531         10      


Q ss_pred             ccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEee
Q 041970          278 HKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       278 ~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                          ..  .++||+|+++-..+     ....++..+.+.|+|||++++..
T Consensus        93 ----~~--~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A           93 ----TF--DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             ----CC--CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ----CC--CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence                11  56899999986432     45778899999999999977643

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.64  E-value=6.3e-08  Score=83.73  Aligned_cols=93  Identities=16%  Similarity=0.169  Sum_probs=68.5

Q ss_pred             HHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970          205 LCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN  265 (327)
Q Consensus       205 lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~  265 (327)
                      ...++|.+++.++.+|||+||                   +|+++.+++.|++|++..    .++.+.  .+|..     
T Consensus        31 ~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~----~~i~~~--~~d~~-----   99 (215)
T 2pxx_A           31 SFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV----PQLRWE--TMDVR-----   99 (215)
T ss_dssp             HHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC----TTCEEE--ECCTT-----
T ss_pred             HHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC----CCcEEE--Ecchh-----
Confidence            356677777788889999999                   999999999999997641    245554  34542     


Q ss_pred             ccccchhhhcccccccCCCCCCCeeEEEEcCChH------------------HHHHHHHHHhhccCCCcEEEEeec
Q 041970          266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------------------PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------------------vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                          ++          .+ ..++||+|++|...+                  ....++..+.++|||||++++...
T Consensus       100 ----~~----------~~-~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          100 ----KL----------DF-PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             ----SC----------CS-CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ----cC----------CC-CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence                00          11 246899999986543                  235788899999999999998754

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.63  E-value=1.1e-07  Score=83.16  Aligned_cols=87  Identities=18%  Similarity=0.285  Sum_probs=65.8

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      ..++.+|||+||                     +|+++.+++.|++|++.+++.  ++++.  .+|..         ++ 
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~--~~d~~---------~~-  100 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK--NVEVL--KSEEN---------KI-  100 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT--TEEEE--ECBTT---------BC-
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC--cEEEE--ecccc---------cC-
Confidence            356678888888                     999999999999999999875  46664  34431         10 


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEeecc
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                               .. ..++||+|+++-....   ...++..+.+.|+|||+++++...
T Consensus       101 ---------~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  145 (219)
T 3dh0_A          101 ---------PL-PDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWK  145 (219)
T ss_dssp             ---------SS-CSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ---------CC-CCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEec
Confidence                     11 2568999999865443   367888999999999999998643

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.63  E-value=2.7e-08  Score=87.96  Aligned_cols=94  Identities=18%  Similarity=0.267  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCC---CCCcEEEEecCCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNI---GPKKMKLHLVPDR  258 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv---~~~~v~v~~~~~d  258 (327)
                      .+.+++++...++++.+|||+||                     +|+++.+++.|++|++.+++   ..+++.+.  .+|
T Consensus        64 ~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~--~~d  141 (226)
T 1i1n_A           64 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV--VGD  141 (226)
T ss_dssp             HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE--ESC
T ss_pred             HHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEE--ECC
Confidence            34566666655778899999999                     99999999999999998875   01356664  344


Q ss_pred             CCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          259 TFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       259 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ..         .           .....++||+|+++.....   +...+.+.|||||+++++
T Consensus       142 ~~---------~-----------~~~~~~~fD~i~~~~~~~~---~~~~~~~~LkpgG~lv~~  181 (226)
T 1i1n_A          142 GR---------M-----------GYAEEAPYDAIHVGAAAPV---VPQALIDQLKPGGRLILP  181 (226)
T ss_dssp             GG---------G-----------CCGGGCCEEEEEECSBBSS---CCHHHHHTEEEEEEEEEE
T ss_pred             cc---------c-----------CcccCCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEE
Confidence            31         0           0112467999999865432   346788999999999986

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.63  E-value=3.7e-07  Score=89.04  Aligned_cols=36  Identities=8%  Similarity=0.008  Sum_probs=28.9

Q ss_pred             CCCCcEEEEEEeCCchHHHHHHHHHhcCCceEEEEc
Q 041970           69 VESPYLLVRICCQKHALDMFSEAPLCFGASSTSVDE  104 (327)
Q Consensus        69 ~~m~w~ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied  104 (327)
                      +.|+|.++-+.|+...++.+.+-|.++|+..+.++.
T Consensus         2 ~~m~~~~~~at~~~GlE~~l~~El~~Lg~~~~~~~~   37 (385)
T 3ldu_A            2 NAMKNYTLISPCFFGMEKMLAREITNLGYEIIKTED   37 (385)
T ss_dssp             ---CCEEEEEECCTTCHHHHHHHHHHTTCEEEEEET
T ss_pred             CCCCceEEEEECChhHHHHHHHHHHhcCCCceEEec
Confidence            568999999999999999999999999986665543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.62  E-value=2.1e-08  Score=89.72  Aligned_cols=85  Identities=15%  Similarity=0.285  Sum_probs=63.6

Q ss_pred             hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          214 IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       214 ~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      +.++.+|||+||                   +|+++.+++.|+++++.+    .++++.  .+|..         ++   
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~--~~d~~---------~~---  114 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN----NKIIFE--ANDIL---------TK---  114 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC----TTEEEE--ECCTT---------TC---
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC----CCeEEE--ECccc---------cC---
Confidence            356789999999                   999999999999987655    346654  35542         00   


Q ss_pred             cccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          275 LSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                             .. +.++||+|+++-..     .....++..+.+.|||||+++++.+.
T Consensus       115 -------~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  161 (266)
T 3ujc_A          115 -------EF-PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYC  161 (266)
T ss_dssp             -------CC-CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -------CC-CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence                   11 25789999998543     34567889999999999999998753

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.62  E-value=1.6e-09  Score=96.84  Aligned_cols=100  Identities=17%  Similarity=0.094  Sum_probs=63.6

Q ss_pred             cCCCchhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecC
Q 041970          195 FGTGEHATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVP  256 (327)
Q Consensus       195 FGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~  256 (327)
                      |........+..+..+... .++.+|||+||                  +|+++.+++.|++|++.+++. +++++.  .
T Consensus        58 ~~~~~~~~~~~l~~~~~~~-~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~--~  133 (241)
T 3gdh_A           58 FSVTPEKIAEHIAGRVSQS-FKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIA-DKIEFI--C  133 (241)
T ss_dssp             HHCCCHHHHHHHHHHHHHH-SCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEE--E
T ss_pred             eecCHHHHHHHHHHHhhhc-cCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCC-cCeEEE--E
Confidence            4433344444445554433 37889999999                  999999999999999999985 467764  3


Q ss_pred             CCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHH---HHHHHHHhhccCCCcEEE
Q 041970          257 DRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL---LQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       257 ~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL---~~L~p~i~~~LkpGG~LI  319 (327)
                      +|..         ++            ...++||+|++|......   ...+.++.++|+|||+++
T Consensus       134 ~d~~---------~~------------~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i  178 (241)
T 3gdh_A          134 GDFL---------LL------------ASFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEI  178 (241)
T ss_dssp             SCHH---------HH------------GGGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHH
T ss_pred             CChH---------Hh------------cccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeH
Confidence            5541         11            125689999999753211   112234455555555543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.62  E-value=7.5e-08  Score=93.07  Aligned_cols=95  Identities=19%  Similarity=0.241  Sum_probs=66.0

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhc-----C-CCCCcEEEEecCCCCCCCCccc
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALN-----N-IGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lN-----g-v~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      ..+|.+|||+||                     +|+++.+++.|++|++.+     | ....++++.  .+|..      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~--~~d~~------  152 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFL--KGFIE------  152 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEE--ESCTT------
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEE--EccHH------
Confidence            345667777777                     999999999999999876     4 433456664  45542      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEeecc
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                         ++..    .....+ +.++||+|++|...+.   ...++..+.++|||||+|+++.+.
T Consensus       153 ---~l~~----~~~~~~-~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~  205 (383)
T 4fsd_A          153 ---NLAT----AEPEGV-PDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVY  205 (383)
T ss_dssp             ---CGGG----CBSCCC-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ---Hhhh----cccCCC-CCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEec
Confidence               1100    000012 2578999999976543   467889999999999999998654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.62  E-value=1.2e-07  Score=84.81  Aligned_cols=86  Identities=14%  Similarity=0.217  Sum_probs=61.5

Q ss_pred             hhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          213 LIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       213 ~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      ...++.+|||+||                   +|+++.+++.|++|++.++   .++++.  .+|.         .++. 
T Consensus        57 ~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~--~~d~---------~~~~-  121 (236)
T 1zx0_A           57 ASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPL--KGLW---------EDVA-  121 (236)
T ss_dssp             HTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEE--ESCH---------HHHG-
T ss_pred             cCCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC---CCeEEE--ecCH---------HHhh-
Confidence            3467889999999                   9999999999999998876   246654  3553         1111 


Q ss_pred             hcccccccCCCCCCCeeEEEEcCC--------hHHHHHHHHHHhhccCCCcEEEEe
Q 041970          274 YLSSHKIRGISETEEYDVVIANIL--------LNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIl--------a~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                             ..+ +.++||+|++|..        ......++..+.++|||||+|++.
T Consensus       122 -------~~~-~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~  169 (236)
T 1zx0_A          122 -------PTL-PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             -------GGS-CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             -------ccc-CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence                   012 2578999999211        122346688999999999999865

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.62  E-value=1e-07  Score=90.16  Aligned_cols=97  Identities=19%  Similarity=0.239  Sum_probs=72.6

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      +..+++..+|.  .++|++|||+||                     +|+++.+++.+++|++.+|+.  ++++.  .+|.
T Consensus       105 ~~s~l~~~~l~--~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~--~v~~~--~~D~  178 (315)
T 1ixk_A          105 ASSMYPPVALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL--NVILF--HSSS  178 (315)
T ss_dssp             HHHHHHHHHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC--SEEEE--SSCG
T ss_pred             HHHHHHHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--eEEEE--ECCh
Confidence            55666666664  568899999999                     999999999999999999985  36653  4554


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHHHHHhhccCC
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLADHIVSYAKP  314 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~p~i~~~Lkp  314 (327)
                      .         ++.         .  ..++||+|++|..-                         .....++..+.++|||
T Consensus       179 ~---------~~~---------~--~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp  238 (315)
T 1ixk_A          179 L---------HIG---------E--LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP  238 (315)
T ss_dssp             G---------GGG---------G--GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             h---------hcc---------c--ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            1         110         1  14689999998531                         1125788899999999


Q ss_pred             CcEEEEeec
Q 041970          315 GAVVGISGI  323 (327)
Q Consensus       315 GG~LIlSGI  323 (327)
                      ||+|++|..
T Consensus       239 GG~lv~stc  247 (315)
T 1ixk_A          239 GGILVYSTC  247 (315)
T ss_dssp             EEEEEEEES
T ss_pred             CCEEEEEeC
Confidence            999999753

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.62  E-value=1.4e-07  Score=100.42  Aligned_cols=111  Identities=14%  Similarity=0.179  Sum_probs=84.9

Q ss_pred             EEEccCcccCCCchhhHHHHHHHHHhhhc--CCCeeeeeee---------------------ecCCHHHHHHHHHHHHh-
Q 041970          187 IILNPGLAFGTGEHATTKLCLLLLRSLIK--GGELFLDYGT---------------------VDIDPQVIKSAHQNAAL-  242 (327)
Q Consensus       187 I~idPG~AFGTG~H~TT~lcLe~Le~~~~--~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~l-  242 (327)
                      ...+|.|++|+..+|.++..++++.+.+.  ++.+|||+||                     +|+++.+++.|+++++. 
T Consensus       690 dea~p~me~gtFsPPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~  769 (950)
T 3htx_A          690 GPSEERMEAAFFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVK  769 (950)
T ss_dssp             CSCCCCCCCCCSSSCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             cchhhHHhhCcCCchHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhc
Confidence            34678999999999999999998888764  7889999999                     99999999999997653 


Q ss_pred             -----cCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhcc
Q 041970          243 -----NNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYA  312 (327)
Q Consensus       243 -----Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~L  312 (327)
                           +++  .++++.  .+|+.         ++          .. ..++||+|+++-..+     ....++..+.++|
T Consensus       770 lnAkr~gl--~nVefi--qGDa~---------dL----------p~-~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvL  825 (950)
T 3htx_A          770 LNKEACNV--KSATLY--DGSIL---------EF----------DS-RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLF  825 (950)
T ss_dssp             TTTTCSSC--SEEEEE--ESCTT---------SC----------CT-TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTT
T ss_pred             cchhhcCC--CceEEE--ECchH---------hC----------Cc-ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHc
Confidence                 244  356664  46652         11          11 257899999985543     2345788999999


Q ss_pred             CCCcEEEEee
Q 041970          313 KPGAVVGISG  322 (327)
Q Consensus       313 kpGG~LIlSG  322 (327)
                      ||| .++++-
T Consensus       826 KPG-~LIIST  834 (950)
T 3htx_A          826 HPK-LLIVST  834 (950)
T ss_dssp             CCS-EEEEEE
T ss_pred             CCC-EEEEEe
Confidence            999 787764

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.60  E-value=6.9e-08  Score=86.26  Aligned_cols=84  Identities=18%  Similarity=0.226  Sum_probs=62.8

Q ss_pred             CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      ++.+|||+||                   +|+++.+++.|++|+..++.  .++++.  .+|..         ++     
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~--~~d~~---------~~-----  140 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK--RVRNYF--CCGLQ---------DF-----  140 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG--GEEEEE--ECCGG---------GC-----
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC--ceEEEE--EcChh---------hc-----
Confidence            4789999999                   99999999999999887752  345554  34431         11     


Q ss_pred             cccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeec
Q 041970          277 SHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                           .. ..++||+|+++-..     ..+..++..+.++|||||+++++..
T Consensus       141 -----~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  186 (241)
T 2ex4_A          141 -----TP-EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  186 (241)
T ss_dssp             -----CC-CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----CC-CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence                 11 24589999998542     2356789999999999999999754

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.60  E-value=6.5e-08  Score=93.68  Aligned_cols=96  Identities=20%  Similarity=0.165  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970          202 TTKLCLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       202 TT~lcLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~  260 (327)
                      .+....++|.+.  ..++++|||+||                   +|++ .+++.|++|++.|++. +++++.  .+|..
T Consensus        47 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~-~~v~~~--~~d~~  122 (376)
T 3r0q_C           47 RMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLD-HIVEVI--EGSVE  122 (376)
T ss_dssp             HHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCT-TTEEEE--ESCGG
T ss_pred             HHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCC-CeEEEE--ECchh
Confidence            344455555443  356789999999                   9999 9999999999999997 678775  35541


Q ss_pred             CCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------HHHHHHHHHHhhccCCCcEEEEee
Q 041970          261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                               +            +...++||+|++|.+.      ..+..++..+.++|||||+++++-
T Consensus       123 ---------~------------~~~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          123 ---------D------------ISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             ---------G------------CCCSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             ---------h------------cCcCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence                     1            1113789999998743      235678888999999999998753

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.60  E-value=4.5e-08  Score=85.69  Aligned_cols=102  Identities=16%  Similarity=0.218  Sum_probs=69.5

Q ss_pred             cccCCCchhhHHHHHHHHHhh--hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCc
Q 041970          193 LAFGTGEHATTKLCLLLLRSL--IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKK  249 (327)
Q Consensus       193 ~AFGTG~H~TT~lcLe~Le~~--~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~  249 (327)
                      +.+|.|.+-+.......+.+.  ..++.+|||+||                     +|+++.+++.|++|++.+++.  +
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~  129 (215)
T 2yxe_A           52 LEIGYGQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD--N  129 (215)
T ss_dssp             EEEETTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT--T
T ss_pred             ccCCCCcEeCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--C
Confidence            445555544433333333333  356789999999                     899999999999999998875  3


Q ss_pred             EEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          250 MKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       250 v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      +.+.  .+|..        .            .....++||+|+++...+.+   ...+.+.|||||+++++
T Consensus       130 v~~~--~~d~~--------~------------~~~~~~~fD~v~~~~~~~~~---~~~~~~~L~pgG~lv~~  176 (215)
T 2yxe_A          130 VIVI--VGDGT--------L------------GYEPLAPYDRIYTTAAGPKI---PEPLIRQLKDGGKLLMP  176 (215)
T ss_dssp             EEEE--ESCGG--------G------------CCGGGCCEEEEEESSBBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             eEEE--ECCcc--------c------------CCCCCCCeeEEEECCchHHH---HHHHHHHcCCCcEEEEE
Confidence            6654  34431        0            11114689999999654432   25788999999999886

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.60  E-value=2.9e-08  Score=87.85  Aligned_cols=101  Identities=21%  Similarity=0.206  Sum_probs=67.5

Q ss_pred             cccCCCchhhHHHHHHHHHhh--hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEE
Q 041970          193 LAFGTGEHATTKLCLLLLRSL--IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKL  252 (327)
Q Consensus       193 ~AFGTG~H~TT~lcLe~Le~~--~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v  252 (327)
                      +.+|.|.+-+....++.+.+.  ..++.+|||+||                  +|+++.+++.|++|++.++    ++++
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~v~~  120 (231)
T 1vbf_A           45 LPILPGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN----NIKL  120 (231)
T ss_dssp             EEEETTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS----SEEE
T ss_pred             eeeCCCCccCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC----CeEE
Confidence            334455443333333333333  357789999999                  9999999999999998776    3555


Q ss_pred             EecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970          253 HLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       253 ~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      .  .+|..         +           .....++||+|+++-..+.+   .+.+.+.|+|||+++++-
T Consensus       121 ~--~~d~~---------~-----------~~~~~~~fD~v~~~~~~~~~---~~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          121 I--LGDGT---------L-----------GYEEEKPYDRVVVWATAPTL---LCKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             E--ESCGG---------G-----------CCGGGCCEEEEEESSBBSSC---CHHHHHTEEEEEEEEEEE
T ss_pred             E--ECCcc---------c-----------ccccCCCccEEEECCcHHHH---HHHHHHHcCCCcEEEEEE
Confidence            3  34531         0           01124689999998654432   357889999999999873

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.60  E-value=1.7e-07  Score=90.40  Aligned_cols=120  Identities=8%  Similarity=-0.017  Sum_probs=76.5

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCC
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIG  246 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~  246 (327)
                      ..+.+.|+..|-+-...+.++.-..++..-..|++|||+||                  +|+++.|++.|++|++.||+.
T Consensus       182 ~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~  261 (369)
T 3bt7_A          182 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHID  261 (369)
T ss_dssp             CEEEEETTSCCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCC
T ss_pred             EEEEECCCCeecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            56789999888877666555554444433334689999999                  999999999999999999985


Q ss_pred             CCcEEEEecCCCCCCCCccccccchhhhcccc------cccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          247 PKKMKLHLVPDRTFPSSMNERVDGIVEYLSSH------KIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       247 ~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~------~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                        ++++.  .+|+.         ++.......      ....+ ...+||+|+.|+...   .+.+.+.+.|+++|+++.
T Consensus       262 --~v~~~--~~d~~---------~~~~~~~~~~~~~~l~~~~~-~~~~fD~Vv~dPPr~---g~~~~~~~~l~~~g~ivy  324 (369)
T 3bt7_A          262 --NVQII--RMAAE---------EFTQAMNGVREFNRLQGIDL-KSYQCETIFVDPPRS---GLDSETEKMVQAYPRILY  324 (369)
T ss_dssp             --SEEEE--CCCSH---------HHHHHHSSCCCCTTGGGSCG-GGCCEEEEEECCCTT---CCCHHHHHHHTTSSEEEE
T ss_pred             --ceEEE--ECCHH---------HHHHHHhhcccccccccccc-ccCCCCEEEECcCcc---ccHHHHHHHHhCCCEEEE
Confidence              46664  46642         111100000      00000 013799999998754   123444555567777765


Q ss_pred             e
Q 041970          321 S  321 (327)
Q Consensus       321 S  321 (327)
                      .
T Consensus       325 v  325 (369)
T 3bt7_A          325 I  325 (369)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.60  E-value=2.2e-07  Score=91.67  Aligned_cols=117  Identities=15%  Similarity=0.157  Sum_probs=79.7

Q ss_pred             ceeEEEccCcccCCCchhhHHHHHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhc
Q 041970          184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      ...+.++|+..|-+- .+.|...++++.+.+  .++.+|||+||                  +|+++.|++.|++|++.|
T Consensus       253 g~~~~~~~~~f~q~n-~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~  331 (433)
T 1uwv_A          253 GLRLTFSPRDFIQVN-AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLN  331 (433)
T ss_dssp             TEEEECCSSSCCCSB-HHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CEEEEECcccccccC-HHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            457889999766554 444555555554444  46789999999                  999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      ++.  ++++.  .+|...     ....+          .. ..++||+|++|+...-+..++..+.+ ++|++.+++|-
T Consensus       332 ~~~--~v~f~--~~d~~~-----~l~~~----------~~-~~~~fD~Vv~dPPr~g~~~~~~~l~~-~~p~~ivyvsc  389 (433)
T 1uwv_A          332 GLQ--NVTFY--HENLEE-----DVTKQ----------PW-AKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSC  389 (433)
T ss_dssp             TCC--SEEEE--ECCTTS-----CCSSS----------GG-GTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEES
T ss_pred             CCC--ceEEE--ECCHHH-----Hhhhh----------hh-hcCCCCEEEECCCCccHHHHHHHHHh-cCCCeEEEEEC
Confidence            985  47764  466520     00000          01 14579999999875433455555543 78999888874

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.59  E-value=2.6e-07  Score=82.53  Aligned_cols=81  Identities=20%  Similarity=0.295  Sum_probs=61.0

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .++.+|||+||                  +|+++.+++.|++|++.++..   +.+.  .+|..         +      
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---v~~~--~~d~~---------~------   99 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLK---IEFL--QGDVL---------E------   99 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---CEEE--ESCGG---------G------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCc---eEEE--ECChh---------h------
Confidence            35679999999                  999999999999999988763   4553  34531         1      


Q ss_pred             cccccCCCCCCCeeEEEEcCC------hHHHHHHHHHHhhccCCCcEEEEe
Q 041970          277 SHKIRGISETEEYDVVIANIL------LNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIl------a~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                            ....++||+|+++..      ...+..++..+.++|+|||+++++
T Consensus       100 ------~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          100 ------IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             ------CCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------cccCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence                  112468999998532      135677889999999999999874

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.58  E-value=1.6e-07  Score=93.35  Aligned_cols=88  Identities=15%  Similarity=0.105  Sum_probs=63.4

Q ss_pred             hcCCCeeeeeee--------------------ecCCHHHHHHHHHHH-------HhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNA-------ALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa-------~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      +++|++|||+||                    ||+++.+++.|++|+       +.+|+...++++.  .+|+.      
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi--~GD~~------  242 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE--RGDFL------  242 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEE--ECCTT------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEE--ECccc------
Confidence            468899999999                    999999999999875       4567643567764  57763      


Q ss_pred             cccchhhhcccccccCCC-CCCCeeEEEEcCC--hHHHHHHHHHHhhccCCCcEEEEee
Q 041970          267 RVDGIVEYLSSHKIRGIS-ETEEYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~-~~~~fDlVvANIl--a~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                         ++.          +. .-..||+|++|..  ...+...+..+.+.|||||+||++-
T Consensus       243 ---~lp----------~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE  288 (438)
T 3uwp_A          243 ---SEE----------WRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  288 (438)
T ss_dssp             ---SHH----------HHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred             ---CCc----------cccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEee
Confidence               110          00 0136999999965  2344445567889999999999874

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.58  E-value=2e-07  Score=82.45  Aligned_cols=83  Identities=19%  Similarity=0.217  Sum_probs=61.4

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .++.+|||+||                    +|+++.+++.|++++..++    ++++.  .+|..              
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~--~~d~~--------------  102 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL----KVKYI--EADYS--------------  102 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT----TEEEE--ESCTT--------------
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC----CEEEE--eCchh--------------
Confidence            45678888888                    9999999999999986664    45654  35542              


Q ss_pred             cccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          275 LSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                             .....++||+|+++-..+     ....++..+.+.|||||+++++...
T Consensus       103 -------~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  150 (234)
T 3dtn_A          103 -------KYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLV  150 (234)
T ss_dssp             -------TCCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -------ccCCCCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence                   111137899999986543     2335889999999999999987643

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.57  E-value=2.1e-07  Score=88.84  Aligned_cols=90  Identities=20%  Similarity=0.210  Sum_probs=66.6

Q ss_pred             HHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970          206 CLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSM  264 (327)
Q Consensus       206 cLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~  264 (327)
                      -.++|.+.  ..++++|||+||                   +|+++ +++.|++|++.|++. +++++.  .+|..    
T Consensus        52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~-~~i~~~--~~d~~----  123 (340)
T 2fyt_A           52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLE-DTITLI--KGKIE----  123 (340)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCT-TTEEEE--ESCTT----
T ss_pred             HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCC-CcEEEE--EeeHH----
Confidence            33455444  356789999999                   99997 899999999999986 567775  45541    


Q ss_pred             cccccchhhhcccccccCCCCCCCeeEEEEcCC------hHHHHHHHHHHhhccCCCcEEE
Q 041970          265 NERVDGIVEYLSSHKIRGISETEEYDVVIANIL------LNPLLQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl------a~vL~~L~p~i~~~LkpGG~LI  319 (327)
                           ++          .+ +.++||+|++|.+      ...+..++..+.++|||||+++
T Consensus       124 -----~~----------~~-~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          124 -----EV----------HL-PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             -----TS----------CC-SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             -----Hh----------cC-CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence                 10          11 2468999999973      1345667888899999999998

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.56  E-value=1.6e-07  Score=84.71  Aligned_cols=86  Identities=13%  Similarity=0.198  Sum_probs=62.3

Q ss_pred             hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          214 IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       214 ~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      ..+|.+||||||                   ||++|.+++.|+++++.++..   +++.  .++.         .++.. 
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~---~~~~--~~~a---------~~~~~-  122 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHK---VIPL--KGLW---------EDVAP-  122 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSE---EEEE--ESCH---------HHHGG-
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCc---eEEE--eehH---------Hhhcc-
Confidence            367899999999                   999999999999999887753   4443  3443         11110 


Q ss_pred             cccccccCCCCCCCeeEEEEcCC--------hHHHHHHHHHHhhccCCCcEEEEee
Q 041970          275 LSSHKIRGISETEEYDVVIANIL--------LNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIl--------a~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                             .. +.++||.|+.+..        ......++.++.++|||||+|++-.
T Consensus       123 -------~~-~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          123 -------TL-PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             -------GS-CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             -------cc-cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence                   12 3678999987643        1235667889999999999998753

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.56  E-value=3.9e-08  Score=90.09  Aligned_cols=88  Identities=19%  Similarity=0.264  Sum_probs=60.9

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCC--CcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGP--KKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~--~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .++.+|||+||                  +|+++.+++.|++|+..++...  .++.+.  .++..         ++.. 
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~--~~d~~---------~~~~-  123 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIE--EANWL---------TLDK-  123 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEE--ECCGG---------GHHH-
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEe--ecChh---------hCcc-
Confidence            46789999999                  9999999999999986554321  234432  24431         1100 


Q ss_pred             cccccccCCCCCCCeeEEEEc--CCh---------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          275 LSSHKIRGISETEEYDVVIAN--ILL---------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvAN--Ila---------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                             .+...++||+|+++  .+.         .....++..+.++|||||+|+++
T Consensus       124 -------~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  174 (293)
T 3thr_A          124 -------DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  174 (293)
T ss_dssp             -------HSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -------ccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence                   00125789999996  332         33677899999999999999986

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.56  E-value=1.2e-07  Score=94.86  Aligned_cols=97  Identities=13%  Similarity=0.082  Sum_probs=73.1

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      +.++++..+|.  .++|++|||+||                     +|+++.+++.+++|++++|+.  ++.+.  .+|.
T Consensus        92 ~ss~l~~~~L~--~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~--nv~v~--~~Da  165 (456)
T 3m4x_A           92 PSAMIVGTAAA--AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS--NAIVT--NHAP  165 (456)
T ss_dssp             TTTHHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS--SEEEE--CCCH
T ss_pred             HHHHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEE--eCCH
Confidence            45677777775  568999999999                     999999999999999999986  36553  4553


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC-------------------------hHHHHHHHHHHhhccCC
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL-------------------------LNPLLQLADHIVSYAKP  314 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl-------------------------a~vL~~L~p~i~~~Lkp  314 (327)
                      .         ++..         . ..++||+|++|..                         +.....++..+.++|||
T Consensus       166 ~---------~l~~---------~-~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp  226 (456)
T 3m4x_A          166 A---------ELVP---------H-FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN  226 (456)
T ss_dssp             H---------HHHH---------H-HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE
T ss_pred             H---------Hhhh---------h-ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            1         1110         0 1468999999975                         12234788899999999


Q ss_pred             CcEEEEee
Q 041970          315 GAVVGISG  322 (327)
Q Consensus       315 GG~LIlSG  322 (327)
                      ||+|+.|-
T Consensus       227 GG~LvYsT  234 (456)
T 3m4x_A          227 KGQLIYST  234 (456)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEEEEE
Confidence            99999875

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.55  E-value=4.9e-08  Score=86.28  Aligned_cols=99  Identities=15%  Similarity=0.169  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHhhhcCCCeeeeeee-------------------------ecCCHHHHHHHHHHHHhcCC---CCCcEEEE
Q 041970          202 TTKLCLLLLRSLIKGGELFLDYGT-------------------------VDIDPQVIKSAHQNAALNNI---GPKKMKLH  253 (327)
Q Consensus       202 TT~lcLe~Le~~~~~g~~VLDvGc-------------------------VDIDp~AV~~A~eNa~lNgv---~~~~v~v~  253 (327)
                      +...++++|.+.++++.+|||+||                         +|+++.+++.|++|++.+++   ...++++.
T Consensus        66 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  145 (227)
T 2pbf_A           66 MHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKII  145 (227)
T ss_dssp             HHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEE
T ss_pred             HHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEE
Confidence            455667777655678899999999                         79999999999999999873   11356664


Q ss_pred             ecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                        .+|..        .....        .....++||+|+++.....   +...+.+.|+|||+++++
T Consensus       146 --~~d~~--------~~~~~--------~~~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          146 --HKNIY--------QVNEE--------EKKELGLFDAIHVGASASE---LPEILVDLLAENGKLIIP  192 (227)
T ss_dssp             --ECCGG--------GCCHH--------HHHHHCCEEEEEECSBBSS---CCHHHHHHEEEEEEEEEE
T ss_pred             --ECChH--------hcccc--------cCccCCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEE
Confidence              35542        00000        0011467999999976543   347788999999999886

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.55  E-value=1.3e-07  Score=82.50  Aligned_cols=79  Identities=22%  Similarity=0.274  Sum_probs=58.5

Q ss_pred             hhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          213 LIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       213 ~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .+.++.+|||+||                  +|+++.+++.|++|+   ++.   +.    .++..         .    
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~~~---~~----~~d~~---------~----   96 (211)
T 3e23_A           40 ELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL---GRP---VR----TMLFH---------Q----   96 (211)
T ss_dssp             TSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---TSC---CE----ECCGG---------G----
T ss_pred             hcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc---CCc---eE----Eeeec---------c----
Confidence            3456778888888                  999999999999997   232   11    23321         1    


Q ss_pred             cccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEee
Q 041970          275 LSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                              +...++||+|+++-..     .....++..+.+.|||||+++++-
T Consensus        97 --------~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  141 (211)
T 3e23_A           97 --------LDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASY  141 (211)
T ss_dssp             --------CCCCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------CCCCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                    1136789999998643     255678999999999999999873

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.55  E-value=2.6e-07  Score=82.19  Aligned_cols=83  Identities=17%  Similarity=0.199  Sum_probs=63.2

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .+|++|||+||                  +|+++.+++.|++|++.+++. .++++.  .+|..         +      
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~--~~d~~---------~------  151 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLG-KNVKFF--NVDFK---------D------  151 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCC-TTEEEE--CSCTT---------T------
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCC-CcEEEE--EcChh---------h------
Confidence            57889999999                  999999999999999999885 456664  45542         0      


Q ss_pred             cccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970          277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                           .....++||+|++|....  ..++..+.+.|+|||++++.-
T Consensus       152 -----~~~~~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          152 -----AEVPEGIFHAAFVDVREP--WHYLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             -----SCCCTTCBSEEEECSSCG--GGGHHHHHHHBCTTCEEEEEE
T ss_pred             -----cccCCCcccEEEECCcCH--HHHHHHHHHHcCCCCEEEEEe
Confidence                 110245799999997522  345677889999999998864

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.54  E-value=2.5e-07  Score=85.46  Aligned_cols=93  Identities=10%  Similarity=0.036  Sum_probs=65.5

Q ss_pred             HHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCC-CCcEEEEecCCCCCCCCcccc
Q 041970          207 LLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIG-PKKMKLHLVPDRTFPSSMNER  267 (327)
Q Consensus       207 Le~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~-~~~v~v~~~~~d~~~~~~~g~  267 (327)
                      ..+++.+..++.+|||+||                  +|+++.+++.|++|+..+++. ..++++.  .+|..       
T Consensus        73 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~--~~d~~-------  143 (299)
T 3g2m_A           73 REFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLV--QGDMS-------  143 (299)
T ss_dssp             HHHHHHHCCCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEE--ECBTT-------
T ss_pred             HHHHHhhCCCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEE--eCchh-------
Confidence            3344444345569999999                  999999999999999887641 0246654  35542       


Q ss_pred             ccchhhhcccccccCCCCCCCeeEEEEc-CC-----hHHHHHHHHHHhhccCCCcEEEEee
Q 041970          268 VDGIVEYLSSHKIRGISETEEYDVVIAN-IL-----LNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       268 ~~~l~~~~~~~~~~~~~~~~~fDlVvAN-Il-----a~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                                    .+...++||+|++. ..     ...+..++..+.+.|||||+|+++-
T Consensus       144 --------------~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  190 (299)
T 3g2m_A          144 --------------AFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSL  190 (299)
T ss_dssp             --------------BCCCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------------cCCcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence                          11125789998854 21     1246788999999999999999874

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.54  E-value=2.7e-07  Score=79.85  Aligned_cols=85  Identities=20%  Similarity=0.251  Sum_probs=63.2

Q ss_pred             hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          214 IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       214 ~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      ..++.+|||+||                   +|+++.+++.|++|++.++..   +.+.  .+|..         ++   
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---~~~~--~~d~~---------~~---   83 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK---LNIS--KGDIR---------KL---   83 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCC---CCEE--ECCTT---------SC---
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCc---eEEE--ECchh---------hC---
Confidence            356789999999                   999999999999999887642   3443  34431         00   


Q ss_pred             cccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeec
Q 041970          275 LSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                             .. +.++||+|+++-..     .....++..+.+.|||||+++++-.
T Consensus        84 -------~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A           84 -------PF-KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             -------CS-CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------CC-CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence                   11 25689999997432     3457788999999999999998865

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.54  E-value=3.5e-07  Score=81.84  Aligned_cols=91  Identities=15%  Similarity=0.184  Sum_probs=64.2

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCC---------------------------C
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGP---------------------------K  248 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~---------------------------~  248 (327)
                      .+|++|||+||                   +|+++.+++.|+++++.++...                           .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            45679999999                   9999999999999987654110                           0


Q ss_pred             cE-EEEecCCCCCCCCccccccchhhhcccccccCCC--CCCCeeEEEEcCChH-------HHHHHHHHHhhccCCCcEE
Q 041970          249 KM-KLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGIS--ETEEYDVVIANILLN-------PLLQLADHIVSYAKPGAVV  318 (327)
Q Consensus       249 ~v-~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~--~~~~fDlVvANIla~-------vL~~L~p~i~~~LkpGG~L  318 (327)
                      ++ .+.  .+|..         +.         ....  ..++||+|+++-..+       ....++..+.++|||||+|
T Consensus       135 ~v~~~~--~~d~~---------~~---------~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l  194 (265)
T 2i62_A          135 AIKQVL--KCDVT---------QS---------QPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFL  194 (265)
T ss_dssp             HEEEEE--ECCTT---------SS---------STTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hheeEE--Eeeec---------cC---------CCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEE
Confidence            14 443  34542         00         0000  126899999987655       4667889999999999999


Q ss_pred             EEeeccC
Q 041970          319 GISGILS  325 (327)
Q Consensus       319 IlSGIl~  325 (327)
                      +++..+.
T Consensus       195 i~~~~~~  201 (265)
T 2i62_A          195 VMVDALK  201 (265)
T ss_dssp             EEEEESS
T ss_pred             EEEecCC
Confidence            9987653

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.54  E-value=1.2e-07  Score=83.42  Aligned_cols=90  Identities=13%  Similarity=0.155  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSM  264 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~  264 (327)
                      .+..++.+.++ .++.+|||+||                  +|+++.+++.|++++..      ++++.  .+|..    
T Consensus        30 ~~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~------~v~~~--~~d~~----   96 (250)
T 2p7i_A           30 HPFMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD------GITYI--HSRFE----   96 (250)
T ss_dssp             HHHHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS------CEEEE--ESCGG----
T ss_pred             HHHHHHHHHhh-cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC------CeEEE--EccHH----
Confidence            35556666554 36789999999                  99999999999998643      35553  34431    


Q ss_pred             cccccchhhhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHh-hccCCCcEEEEee
Q 041970          265 NERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIV-SYAKPGAVVGISG  322 (327)
Q Consensus       265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~-~~LkpGG~LIlSG  322 (327)
                           +            ....++||+|+++-..+.   ...++..+. ++|||||+++++.
T Consensus        97 -----~------------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~  141 (250)
T 2p7i_A           97 -----D------------AQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC  141 (250)
T ss_dssp             -----G------------CCCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -----H------------cCcCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEc
Confidence                 1            113578999999865432   367888999 9999999999975

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.53  E-value=1.2e-07  Score=92.61  Aligned_cols=93  Identities=15%  Similarity=0.226  Sum_probs=67.6

Q ss_pred             HHHHHHHHh--hhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCC
Q 041970          204 KLCLLLLRS--LIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPS  262 (327)
Q Consensus       204 ~lcLe~Le~--~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~  262 (327)
                      ..--++|.+  ...+|++||||||                   ||.++ +++.|++|++.||+. ++|++.  .++.-  
T Consensus        69 ~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~-~~i~~i--~~~~~--  142 (376)
T 4hc4_A           69 DAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLE-DRVHVL--PGPVE--  142 (376)
T ss_dssp             HHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCT-TTEEEE--ESCTT--
T ss_pred             HHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCC-ceEEEE--eeeee--
Confidence            333344543  2347899999999                   99997 579999999999998 688875  45531  


Q ss_pred             CccccccchhhhcccccccCCCCCCCeeEEEEcCCh------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          263 SMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       263 ~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                             +            +...++||+||++++.      ..+..++....++|||||.+|-+
T Consensus       143 -------~------------~~lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~  188 (376)
T 4hc4_A          143 -------T------------VELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA  188 (376)
T ss_dssp             -------T------------CCCSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred             -------e------------ecCCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence                   1            1225789999998753      24566777788999999998754

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.53  E-value=4e-07  Score=83.73  Aligned_cols=40  Identities=23%  Similarity=0.402  Sum_probs=33.3

Q ss_pred             CCCeeEEEEcCChHH-------HHHHHHHHhhccCCCcEEEEeeccC
Q 041970          286 TEEYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       286 ~~~fDlVvANIla~v-------L~~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                      .++||+|++|-..+.       ...++..+.++|||||+|++++.+.
T Consensus       172 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~  218 (289)
T 2g72_A          172 PLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE  218 (289)
T ss_dssp             CSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred             CCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            457999999976544       5678899999999999999998664

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.53  E-value=3.4e-07  Score=87.34  Aligned_cols=83  Identities=18%  Similarity=0.161  Sum_probs=64.4

Q ss_pred             cCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          215 KGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       215 ~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      +++.+|||+||                     +|+|+.+++.|++|++.+|+.  ++++.  .+|..         ++. 
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~--~i~~~--~~D~~---------~~~-  267 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS--WIRFL--RADAR---------HLP-  267 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT--TCEEE--ECCGG---------GGG-
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC--ceEEE--eCChh---------hCc-
Confidence            56789999999                     999999999999999999986  46664  45542         111 


Q ss_pred             hcccccccCCCCCCCeeEEEEcCCh-----------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          274 YLSSHKIRGISETEEYDVVIANILL-----------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla-----------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                                .....||+|++|+..           ..+..++..+.+.|+|||++++.
T Consensus       268 ----------~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          268 ----------RFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             ----------GTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             ----------cccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                      113568999999763           22367888999999999998875

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.53  E-value=2.4e-07  Score=82.59  Aligned_cols=82  Identities=13%  Similarity=0.161  Sum_probs=61.7

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      .++.+|||+||                   +|+++.+++.|++|++.+    .++.+.  .+|..         ++    
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~--~~d~~---------~~----  152 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM----PVGKFI--LASME---------TA----  152 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS----SEEEEE--ESCGG---------GC----
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC----CceEEE--EccHH---------HC----
Confidence            36789999999                   999999999999998655    245554  34431         10    


Q ss_pred             ccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEee
Q 041970          276 SSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                            .. +.++||+|+++-..     .....++..+.++|||||+++++.
T Consensus       153 ------~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  197 (254)
T 1xtp_A          153 ------TL-PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             ------CC-CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------CC-CCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence                  11 25689999998653     235678899999999999999875

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.52  E-value=1.6e-07  Score=92.23  Aligned_cols=85  Identities=16%  Similarity=0.163  Sum_probs=64.3

Q ss_pred             cCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCc-EEEEecCCCCCCCCccccccchh
Q 041970          215 KGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKK-MKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       215 ~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~-v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      ++|.+|||++|                     +|+++.|++.+++|+++||++ ++ +++.  .+|+.         +++
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~-~~~v~v~--~~Da~---------~~l  118 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP-EDRYEIH--GMEAN---------FFL  118 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC-GGGEEEE--CSCHH---------HHH
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CceEEEE--eCCHH---------HHH
Confidence            36889999999                     999999999999999999997 45 7764  56642         221


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      .       ...  .++||+|+.|+.. ....+++.+.+.|++||+|+++
T Consensus       119 ~-------~~~--~~~fD~V~lDP~g-~~~~~l~~a~~~Lk~gGll~~t  157 (392)
T 3axs_A          119 R-------KEW--GFGFDYVDLDPFG-TPVPFIESVALSMKRGGILSLT  157 (392)
T ss_dssp             H-------SCC--SSCEEEEEECCSS-CCHHHHHHHHHHEEEEEEEEEE
T ss_pred             H-------Hhh--CCCCcEEEECCCc-CHHHHHHHHHHHhCCCCEEEEE
Confidence            0       011  3579999999942 2245677788889999998876

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.52  E-value=1.9e-07  Score=84.69  Aligned_cols=84  Identities=21%  Similarity=0.402  Sum_probs=64.4

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .++.+|||+||                    +|+++.+++.|++|+..+++.  ++++.  .+|..         ++   
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~--~~d~~---------~~---   99 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK--NVKFL--QANIF---------SL---   99 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEE--ECCGG---------GC---
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEE--Ecccc---------cC---
Confidence            56789999999                    999999999999999999885  46654  34531         10   


Q ss_pred             cccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEee
Q 041970          275 LSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSG  322 (327)
                             .. +.++||+|+++-....   ...++..+.+.|||||++++.-
T Consensus       100 -------~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          100 -------PF-EDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             -------CS-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -------CC-CCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence                   11 2578999999865432   3578889999999999999853

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.52  E-value=2.4e-07  Score=88.76  Aligned_cols=84  Identities=12%  Similarity=0.211  Sum_probs=64.6

Q ss_pred             hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          214 IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       214 ~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      +.++++|||+||                   +|+++ +++.|++|++.|++. +++++.  .+|..         ++   
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~-~~v~~~--~~d~~---------~~---  127 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLD-HVVTII--KGKVE---------EV---  127 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCT-TTEEEE--ESCTT---------TC---
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCC-CcEEEE--ECcHH---------Hc---
Confidence            457889999999                   99996 999999999999997 678775  45542         10   


Q ss_pred             cccccccCCCCCCCeeEEEEcCC------hHHHHHHHHHHhhccCCCcEEEEe
Q 041970          275 LSSHKIRGISETEEYDVVIANIL------LNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIl------a~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                             .+ +.++||+|++|.+      ...+..++..+.++|||||+++.+
T Consensus       128 -------~~-~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          128 -------EL-PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             -------CC-SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             -------cC-CCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence                   11 2478999999863      134667888899999999998743

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.52  E-value=1.7e-07  Score=82.98  Aligned_cols=93  Identities=17%  Similarity=0.236  Sum_probs=69.3

Q ss_pred             HHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970          204 KLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN  265 (327)
Q Consensus       204 ~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~  265 (327)
                      +..++++.+++.++.+|||+||                  +|+++.+++.|++|+..     .++.+.  .+|..     
T Consensus        41 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~--~~d~~-----  108 (242)
T 3l8d_A           41 STIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEG-----PDLSFI--KGDLS-----  108 (242)
T ss_dssp             TTHHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCB-----TTEEEE--ECBTT-----
T ss_pred             HHHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccc-----CCceEE--Ecchh-----
Confidence            4567788888888999999999                  99999999999988521     345554  34431     


Q ss_pred             ccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeec
Q 041970          266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                          ++          .. +.++||+|+++-..+   ....++..+.+.|+|||+++++..
T Consensus       109 ----~~----------~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          109 ----SL----------PF-ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             ----BC----------SS-CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----cC----------CC-CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence                10          11 257899999986443   335788999999999999999863

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.51  E-value=2e-07  Score=85.57  Aligned_cols=96  Identities=15%  Similarity=0.088  Sum_probs=63.6

Q ss_pred             HHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHh----------cCC-----CCCcEE
Q 041970          207 LLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAAL----------NNI-----GPKKMK  251 (327)
Q Consensus       207 Le~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~l----------Ngv-----~~~~v~  251 (327)
                      .+++..+.  .++.+|||+||                  ||+++.||+.|+++...          ++.     ...+++
T Consensus        57 ~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  136 (252)
T 2gb4_A           57 KKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSIS  136 (252)
T ss_dssp             HHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEE
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceE
Confidence            34454443  46789999999                  99999999999876532          110     013466


Q ss_pred             EEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeec
Q 041970          252 LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       252 v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      +.  .+|..         ++.          ....++||+|+++-..     .....++..+.++|||||+|++..+
T Consensus       137 ~~--~~D~~---------~l~----------~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~  192 (252)
T 2gb4_A          137 LY--CCSIF---------DLP----------RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVL  192 (252)
T ss_dssp             EE--ESCTT---------TGG----------GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EE--ECccc---------cCC----------cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence            64  46653         110          1112689999987432     2345678899999999999976654

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.51  E-value=2.4e-07  Score=93.04  Aligned_cols=93  Identities=19%  Similarity=0.207  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhhh--cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSLI--KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~~--~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      |....+.+.+.+  .++++|||+||                   +|+++ +++.|++|++.|++. +++++.  .+|.. 
T Consensus       143 t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~-~~v~~~--~~d~~-  217 (480)
T 3b3j_A          143 TGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT-DRIVVI--PGKVE-  217 (480)
T ss_dssp             HHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCT-TTEEEE--ESCTT-
T ss_pred             HHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCC-CcEEEE--ECchh-
Confidence            333444444332  46789999999                   99999 889999999999996 578775  45542 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEE
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIl  320 (327)
                                          .+...++||+|++|.+..     .+...+..+.++|||||++++
T Consensus       218 --------------------~~~~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          218 --------------------EVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             --------------------TCCCSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             --------------------hCccCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence                                111136899999997732     233445577899999999984

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.51  E-value=3.6e-07  Score=84.45  Aligned_cols=100  Identities=12%  Similarity=0.159  Sum_probs=67.6

Q ss_pred             HHHHHHhhh-cCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhc-CCCCCcEEEEecCCCCCCC
Q 041970          206 CLLLLRSLI-KGGELFLDYGT---------------------VDIDPQVIKSAHQNAALN-NIGPKKMKLHLVPDRTFPS  262 (327)
Q Consensus       206 cLe~Le~~~-~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lN-gv~~~~v~v~~~~~d~~~~  262 (327)
                      ..+.|.++. .++.+|||+||                     +|+++.+++.|++|++.+ +.. .++++.  .+|..  
T Consensus        25 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~v~~~--~~d~~--   99 (299)
T 3g5t_A           25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY-KNVSFK--ISSSD--   99 (299)
T ss_dssp             HHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CC-TTEEEE--ECCTT--
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCC-CceEEE--EcCHH--
Confidence            445555553 46788999999                     999999999999999987 433 467765  35542  


Q ss_pred             CccccccchhhhcccccccCCCCCCCeeEEEEcCChH--HHHHHHHHHhhccCCCcEEEEee
Q 041970          263 SMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       263 ~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~--vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                             ++...    +...+ ..++||+|+++-..+  ....++..+.+.|||||+|++.+
T Consensus       100 -------~~~~~----~~~~~-~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~~  149 (299)
T 3g5t_A          100 -------DFKFL----GADSV-DKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIWG  149 (299)
T ss_dssp             -------CCGGG----CTTTT-TSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -------hCCcc----ccccc-cCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEEe
Confidence                   10000    00000 126899999996543  34567889999999999999844

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.50  E-value=2.8e-07  Score=80.58  Aligned_cols=87  Identities=8%  Similarity=0.083  Sum_probs=61.4

Q ss_pred             HHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          205 LCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       205 lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      ..++.+.  ..++.+|||+||                  +|+++.+++.|++++. .     ++++.  .+|..      
T Consensus        36 ~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~-----~~~~~--~~d~~------   99 (220)
T 3hnr_A           36 DILEDVV--NKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP-K-----EFSIT--EGDFL------   99 (220)
T ss_dssp             HHHHHHH--HTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC-T-----TCCEE--SCCSS------
T ss_pred             HHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC-C-----ceEEE--eCChh------
Confidence            3444443  247789999999                  9999999999999865 2     23443  45542      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEEEcCChHH-----HHHHHHHHhhccCCCcEEEEee
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-----L~~L~p~i~~~LkpGG~LIlSG  322 (327)
                         +            ....++||+|++|-..+.     ...++..+.+.|||||+++++.
T Consensus       100 ---~------------~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          100 ---S------------FEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             ---S------------CCCCSCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ---h------------cCCCCCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEe
Confidence               1            111278999999865432     2347889999999999999985

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.50  E-value=2.1e-07  Score=85.45  Aligned_cols=71  Identities=28%  Similarity=0.300  Sum_probs=54.3

Q ss_pred             ecCCHHHHHHHHHHHHhc-CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHH
Q 041970          226 VDIDPQVIKSAHQNAALN-NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQL  304 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lN-gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L  304 (327)
                      +|+++.+++.|++|++.+ |..  ++++.  .+|..         +           .+ +.++||+|++|+...  ..+
T Consensus       141 vD~s~~~~~~a~~~~~~~~g~~--~v~~~--~~d~~---------~-----------~~-~~~~fD~Vi~~~~~~--~~~  193 (275)
T 1yb2_A          141 VERDEDNLKKAMDNLSEFYDIG--NVRTS--RSDIA---------D-----------FI-SDQMYDAVIADIPDP--WNH  193 (275)
T ss_dssp             ECSCHHHHHHHHHHHHTTSCCT--TEEEE--CSCTT---------T-----------CC-CSCCEEEEEECCSCG--GGS
T ss_pred             EECCHHHHHHHHHHHHhcCCCC--cEEEE--ECchh---------c-----------cC-cCCCccEEEEcCcCH--HHH
Confidence            899999999999999998 853  56664  45542         0           11 246899999987532  457


Q ss_pred             HHHHhhccCCCcEEEEeec
Q 041970          305 ADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       305 ~p~i~~~LkpGG~LIlSGI  323 (327)
                      +..+.+.|||||+++++..
T Consensus       194 l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          194 VQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             HHHHHHTEEEEEEEEEEES
T ss_pred             HHHHHHHcCCCCEEEEEeC
Confidence            7888999999999998763

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.49  E-value=2.6e-07  Score=82.60  Aligned_cols=94  Identities=17%  Similarity=0.176  Sum_probs=66.3

Q ss_pred             HHHHHHHHHh---hhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRS---LIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~---~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      .+..++.+.+   .+.++.+|||+||                  +|+++.+++.|++|+ .++.  .++.+.  .+|.. 
T Consensus        23 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~--~~~~~~--~~d~~-   96 (263)
T 2yqz_A           23 AGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVD--RKVQVV--QADAR-   96 (263)
T ss_dssp             HHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSC--TTEEEE--ESCTT-
T ss_pred             HHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccC--CceEEE--Ecccc-
Confidence            3444555532   3467789999999                  999999999999998 3332  346664  34431 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEe
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlS  321 (327)
                              ++          .+ +.++||+|+++-..+.   ...++..+.+.|||||+++++
T Consensus        97 --------~~----------~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A           97 --------AI----------PL-PDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             --------SC----------CS-CTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------cC----------CC-CCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence                    00          11 2568999999865433   367888999999999999986

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.49  E-value=4.7e-07  Score=85.27  Aligned_cols=94  Identities=13%  Similarity=0.141  Sum_probs=60.9

Q ss_pred             CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCC----cEEEEecCCCCCCCCccccccchh
Q 041970          216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPK----KMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~----~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      +|.+|||+||                   +|+++.+|+.|++.+...+....    .+++.  ..+..   .+....++.
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~--~~d~~---~d~~~~~l~  122 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYI--QETIR---SDTFVSSVR  122 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEE--ECCTT---SSSHHHHHH
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchh--hhhcc---cchhhhhhh
Confidence            3789999999                   99999999999998876654210    13332  23321   000000110


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCCh------HHHHHHHHHHhhccCCCcEEEEeec
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILL------NPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla------~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                              ... +.++||+|+|+...      .....++..++++|||||+|+++-+
T Consensus       123 --------~~~-~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          123 --------EVF-YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             --------TTC-CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------ccc-cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence                    011 25689999987532      2346889999999999999998753

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.49  E-value=4.7e-06  Score=81.55  Aligned_cols=69  Identities=28%  Similarity=0.293  Sum_probs=47.3

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------  298 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------  298 (327)
                      +|+|+.|++.|++|++.||+. +++++.  .+|..         +            .....+||+|++|+..       
T Consensus       269 vDid~~al~~Ar~Na~~~gl~-~~I~~~--~~D~~---------~------------~~~~~~fD~Iv~NPPYg~rl~~~  324 (393)
T 3k0b_A          269 GDIDARLIEIAKQNAVEAGLG-DLITFR--QLQVA---------D------------FQTEDEYGVVVANPPYGERLEDE  324 (393)
T ss_dssp             EESCHHHHHHHHHHHHHTTCT-TCSEEE--ECCGG---------G------------CCCCCCSCEEEECCCCCCSHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCC-CceEEE--ECChH---------h------------CCCCCCCCEEEECCCCccccCCc
Confidence            599999999999999999997 567764  45542         1            1124589999999874       


Q ss_pred             HHHHHHHHHHhhccCC--CcEE
Q 041970          299 NPLLQLADHIVSYAKP--GAVV  318 (327)
Q Consensus       299 ~vL~~L~p~i~~~Lkp--GG~L  318 (327)
                      ..+..+...+.+.||+  ||.+
T Consensus       325 ~~l~~ly~~lg~~lk~~~g~~~  346 (393)
T 3k0b_A          325 EAVRQLYREMGIVYKRMPTWSV  346 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCEE
T ss_pred             hhHHHHHHHHHHHHhcCCCCEE
Confidence            3344455555555544  6654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.48  E-value=2.6e-07  Score=78.24  Aligned_cols=86  Identities=17%  Similarity=0.202  Sum_probs=61.7

Q ss_pred             HHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcccccc
Q 041970          208 LLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVD  269 (327)
Q Consensus       208 e~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~  269 (327)
                      ++++.++.++.+|||+||                  +|+++.+++.|++|+.       ++.+.  .+|..         
T Consensus        38 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~-------~~~~~--~~d~~---------   99 (195)
T 3cgg_A           38 RLIDAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP-------EARWV--VGDLS---------   99 (195)
T ss_dssp             HHHHHHSCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT-------TSEEE--ECCTT---------
T ss_pred             HHHHHhccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCC-------CCcEE--Ecccc---------
Confidence            455666778889999998                  9999999999999862       23443  34432         


Q ss_pred             chhhhcccccccCCCCCCCeeEEEEc-CCh-----HHHHHHHHHHhhccCCCcEEEEee
Q 041970          270 GIVEYLSSHKIRGISETEEYDVVIAN-ILL-----NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       270 ~l~~~~~~~~~~~~~~~~~fDlVvAN-Ila-----~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      ++          .. +.++||+|++| -..     .....++..+.+.|+|||+++++-
T Consensus       100 ~~----------~~-~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A          100 VD----------QI-SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             TS----------CC-CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cC----------CC-CCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            00          11 24689999998 222     345778899999999999999853

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.48  E-value=4.9e-07  Score=84.19  Aligned_cols=91  Identities=12%  Similarity=0.068  Sum_probs=61.5

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCC-----CCCcEEEEecCCCCCCCCccccccc
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNI-----GPKKMKLHLVPDRTFPSSMNERVDG  270 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv-----~~~~v~v~~~~~d~~~~~~~g~~~~  270 (327)
                      .++.+|||+||                   +|+++.+++.|+++...++.     ...++.+.  .+|...       ..
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~--~~D~~~-------~~  103 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFI--TADSSK-------EL  103 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEE--ECCTTT-------SC
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEE--Eecccc-------cc
Confidence            36789999999                   99999999999999876531     11245554  455420       00


Q ss_pred             hhhhcccccccCCC-CCCCeeEEEEcCChH-------HHHHHHHHHhhccCCCcEEEEee
Q 041970          271 IVEYLSSHKIRGIS-ETEEYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       271 l~~~~~~~~~~~~~-~~~~fDlVvANIla~-------vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      +.        ..+. ..++||+|++|...+       ....++..+.+.|||||+++++-
T Consensus       104 ~~--------~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (313)
T 3bgv_A          104 LI--------DKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT  155 (313)
T ss_dssp             ST--------TTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hh--------hhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            00        0011 135899999986542       24678899999999999999874

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.48  E-value=1.7e-07  Score=81.40  Aligned_cols=91  Identities=18%  Similarity=0.253  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSM  264 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~  264 (327)
                      .+..++.+.. ..++.+|||+||                  +|+++.+++.|++    ++..  ++++.  .+|..    
T Consensus        34 ~~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~~~--~~~~~--~~d~~----  100 (218)
T 3ou2_A           34 APAALERLRA-GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HGLD--NVEFR--QQDLF----  100 (218)
T ss_dssp             HHHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GCCT--TEEEE--ECCTT----
T ss_pred             HHHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cCCC--CeEEE--ecccc----
Confidence            3445555543 356679999999                  9999999999988    4443  46654  35542    


Q ss_pred             cccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEeec
Q 041970          265 NERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                                       .....++||+|+++-..+     .+..++..+.+.|+|||+++++..
T Consensus       101 -----------------~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          101 -----------------DWTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             -----------------SCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----------------cCCCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence                             111367899999986432     257788999999999999999864

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.48  E-value=2.4e-07  Score=81.45  Aligned_cols=96  Identities=6%  Similarity=0.003  Sum_probs=62.7

Q ss_pred             HHHHHHHhh-hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCC----------CCCcEEEEec
Q 041970          205 LCLLLLRSL-IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNI----------GPKKMKLHLV  255 (327)
Q Consensus       205 lcLe~Le~~-~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv----------~~~~v~v~~~  255 (327)
                      ...++++++ +.++.+|||+||                  +|+++.|++.|+++++.+..          ...++++.  
T Consensus        10 ~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~--   87 (203)
T 1pjz_A           10 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW--   87 (203)
T ss_dssp             HHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE--
T ss_pred             HHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEE--
Confidence            344555554 357889999999                  99999999999988654210          01235554  


Q ss_pred             CCCCCCCCccccccchhhhcccccccCCCCC-CCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEee
Q 041970          256 PDRTFPSSMNERVDGIVEYLSSHKIRGISET-EEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~-~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      .+|..         ++          .. .. ++||+|+++...     .....++..+.++|||||++++..
T Consensus        88 ~~d~~---------~l----------~~-~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A           88 CGDFF---------AL----------TA-RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             EECCS---------SS----------TH-HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ECccc---------cC----------Cc-ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            34542         11          00 12 589999987533     233457889999999999855544

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.48  E-value=1.9e-07  Score=83.20  Aligned_cols=85  Identities=18%  Similarity=0.153  Sum_probs=58.2

Q ss_pred             hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      +++|.+|||+||                    +|+++.+++.++++++...    ++.+.  .+|..         ....
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~----~v~~~--~~d~~---------~~~~  119 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN----NIIPL--LFDAS---------KPWK  119 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS----SEEEE--CSCTT---------CGGG
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCC----CeEEE--EcCCC---------Cchh
Confidence            457788999999                    9999999988888776531    24443  34541         0000


Q ss_pred             hcccccccCCCCCCCeeEEEEcCChHH-HHHHHHHHhhccCCCcEEEEe
Q 041970          274 YLSSHKIRGISETEEYDVVIANILLNP-LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla~v-L~~L~p~i~~~LkpGG~LIlS  321 (327)
                            ....  .++||+|++|+.... ...++..+.++|||||+|+++
T Consensus       120 ------~~~~--~~~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          120 ------YSGI--VEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             ------TTTT--CCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------hccc--ccceeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence                  0011  368999999975432 334578999999999999987

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.48  E-value=2.4e-07  Score=86.95  Aligned_cols=86  Identities=15%  Similarity=0.121  Sum_probs=61.7

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHh--cCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~l--Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      ..+++|||+||                    +|+|+.+++.|++|+..  +++...++++.  .+|..         +.+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~--~~D~~---------~~l  157 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIV--IANGA---------EYV  157 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE--ESCHH---------HHG
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEE--ECcHH---------HHH
Confidence            35689999999                    99999999999999865  44533567775  35531         111


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChH-H-------HHHHHHHHhhccCCCcEEEEe
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLN-P-------LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~-v-------L~~L~p~i~~~LkpGG~LIlS  321 (327)
                      .        .  ..++||+|++|.... .       ...++..+.++|+|||+|++.
T Consensus       158 ~--------~--~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          158 R--------K--FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             G--------G--CSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             h--------h--CCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            0        1  146899999997533 1       157788999999999999986

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.47  E-value=3.6e-07  Score=84.09  Aligned_cols=82  Identities=16%  Similarity=0.214  Sum_probs=62.8

Q ss_pred             cCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          215 KGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       215 ~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      .++.+|||+||                     +|+++.+++.|++|+..++.   ++++.  .+|..         +   
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~v~~~--~~d~~---------~---   83 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY---DSEFL--EGDAT---------E---   83 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS---EEEEE--ESCTT---------T---
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC---ceEEE--Ecchh---------h---
Confidence            46789999999                     99999999999999988764   46654  35542         1   


Q ss_pred             hcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEee
Q 041970          274 YLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSG  322 (327)
                               ....++||+|+++-....   ...++..+.+.|||||++++.-
T Consensus        84 ---------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  126 (284)
T 3gu3_A           84 ---------IELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  126 (284)
T ss_dssp             ---------CCCSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ---------cCcCCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEe
Confidence                     111468999999876433   3578889999999999999764

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.47  E-value=8.2e-08  Score=88.70  Aligned_cols=97  Identities=12%  Similarity=0.075  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      .++...+|.  .++|++|||+||                     +|+++.+++.+++|++.+|+.  ++++.  .+|.. 
T Consensus        72 s~l~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~--~v~~~--~~D~~-  144 (274)
T 3ajd_A           72 SMIPPIVLN--PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL--NTIII--NADMR-  144 (274)
T ss_dssp             GGHHHHHHC--CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEE--ESCHH-
T ss_pred             HHHHHHHhC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC--cEEEE--eCChH-
Confidence            344444443  356778888888                     999999999999999999985  46654  34531 


Q ss_pred             CCccccccchhhhcccccccCC-CCCCCeeEEEEcCCh---------------------HHHHHHHHHHhhccCCCcEEE
Q 041970          262 SSMNERVDGIVEYLSSHKIRGI-SETEEYDVVIANILL---------------------NPLLQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~-~~~~~fDlVvANIla---------------------~vL~~L~p~i~~~LkpGG~LI  319 (327)
                              ++..        .. ...++||+|++|..-                     .....++..+.++|||||+|+
T Consensus       145 --------~~~~--------~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv  208 (274)
T 3ajd_A          145 --------KYKD--------YLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELV  208 (274)
T ss_dssp             --------HHHH--------HHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEE
T ss_pred             --------hcch--------hhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence                    1110        00 014689999999432                     233678888999999999999


Q ss_pred             Eee
Q 041970          320 ISG  322 (327)
Q Consensus       320 lSG  322 (327)
                      +|-
T Consensus       209 ~st  211 (274)
T 3ajd_A          209 YST  211 (274)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.47  E-value=3.5e-07  Score=81.18  Aligned_cols=75  Identities=15%  Similarity=0.080  Sum_probs=54.9

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------  299 (327)
                      +|+++.+++.|++|++.+++.  ++++.  .+|+.         ++..        .+ +.+.||.|++|....      
T Consensus        68 iD~s~~~l~~a~~~~~~~~~~--nv~~~--~~d~~---------~l~~--------~~-~~~~~d~v~~~~~~p~~~~~~  125 (213)
T 2fca_A           68 IELFKSVIVTAVQKVKDSEAQ--NVKLL--NIDAD---------TLTD--------VF-EPGEVKRVYLNFSDPWPKKRH  125 (213)
T ss_dssp             ECSCHHHHHHHHHHHHHSCCS--SEEEE--CCCGG---------GHHH--------HC-CTTSCCEEEEESCCCCCSGGG
T ss_pred             EEechHHHHHHHHHHHHcCCC--CEEEE--eCCHH---------HHHh--------hc-CcCCcCEEEEECCCCCcCccc
Confidence            999999999999999999985  46664  56642         1110        02 256799999985321      


Q ss_pred             -----HHHHHHHHHhhccCCCcEEEEee
Q 041970          300 -----PLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       300 -----vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                           ....++..+.++|||||.|+++.
T Consensus       126 ~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          126 EKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             GGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence                 13567889999999999999864

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.47  E-value=2.3e-07  Score=83.17  Aligned_cols=76  Identities=9%  Similarity=0.143  Sum_probs=54.2

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NP  300 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~v  300 (327)
                      +|+++.+++.|++|++.+++.  ++++.  .+|+.         +++.       ..+ +.+.||.|++|...     ..
T Consensus        64 iD~s~~~l~~a~~~~~~~~l~--nv~~~--~~Da~---------~~l~-------~~~-~~~~~d~v~~~~~~p~~~~~~  122 (218)
T 3dxy_A           64 IEVHSPGVGACLASAHEEGLS--NLRVM--CHDAV---------EVLH-------KMI-PDNSLRMVQLFFPDPWHKARH  122 (218)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCS--SEEEE--CSCHH---------HHHH-------HHS-CTTCEEEEEEESCCCCCSGGG
T ss_pred             EEecHHHHHHHHHHHHHhCCC--cEEEE--ECCHH---------HHHH-------HHc-CCCChheEEEeCCCCccchhh
Confidence            899999999999999999986  36664  45541         1110       001 26789999998321     11


Q ss_pred             H------HHHHHHHhhccCCCcEEEEee
Q 041970          301 L------LQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       301 L------~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      .      ..++..+.++|||||+|+++-
T Consensus       123 ~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          123 NKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             GGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            1      247889999999999999864

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.47  E-value=2.7e-07  Score=87.85  Aligned_cols=86  Identities=21%  Similarity=0.240  Sum_probs=63.3

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHh--cCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~l--Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      ..+++|||+||                    +|+|+.+++.|++|+..  |+++..++++.  .+|..         +.+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~--~~D~~---------~~l  183 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF--IEDAS---------KFL  183 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEE--ESCHH---------HHH
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEE--EccHH---------HHH
Confidence            45689999999                    99999999999999876  45533567775  35531         111


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCC-----hHHH--HHHHHHHhhccCCCcEEEEe
Q 041970          273 EYLSSHKIRGISETEEYDVVIANIL-----LNPL--LQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIl-----a~vL--~~L~p~i~~~LkpGG~LIlS  321 (327)
                      .        .  ..++||+|++|..     ...+  ..++..+.++|+|||++++.
T Consensus       184 ~--------~--~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  229 (321)
T 2pt6_A          184 E--------N--VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  229 (321)
T ss_dssp             H--------H--CCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             h--------h--cCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            0        0  1468999999974     1222  67888999999999999984

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.47  E-value=3.2e-07  Score=84.11  Aligned_cols=83  Identities=14%  Similarity=0.191  Sum_probs=63.6

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      +.+|.+|||+||                     +|+++.+++.|++|++.+++. +++++.  .+|..         +  
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~---------~--  175 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-ERVTIK--VRDIS---------E--  175 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-GGEEEE--CCCGG---------G--
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-CCEEEE--ECCHH---------H--
Confidence            456788999999                     999999999999999999885 467764  45542         0  


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                               .+ +.++||+|++|+...  ..++..+.+.|+|||++++.-
T Consensus       176 ---------~~-~~~~~D~V~~~~~~~--~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          176 ---------GF-DEKDVDALFLDVPDP--WNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             ---------CC-SCCSEEEEEECCSCG--GGTHHHHHHHEEEEEEEEEEE
T ss_pred             ---------cc-cCCccCEEEECCcCH--HHHHHHHHHHcCCCCEEEEEe
Confidence                     11 246899999997532  356778889999999998864

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.47  E-value=6.8e-07  Score=88.88  Aligned_cols=91  Identities=18%  Similarity=0.312  Sum_probs=64.5

Q ss_pred             hcCCCeeeeeee--------------------ecCCHHHHHHH-------HHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          214 IKGGELFLDYGT--------------------VDIDPQVIKSA-------HQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A-------~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      +++|++|||+||                    +|+++.+++.|       ++|++.+|+...++++.  .++.+   ..+
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i--~gD~~---~~~  314 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS--LKKSF---VDN  314 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE--ESSCS---TTC
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE--EcCcc---ccc
Confidence            467899999999                    99999999999       99999999532457764  33321   000


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEEEcCC--hHHHHHHHHHHhhccCCCcEEEEee
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl--a~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      .  .+.         .  ..++||+|++|..  ...+...+..+.+.|||||+++++.
T Consensus       315 ~--~~~---------~--~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          315 N--RVA---------E--LIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             H--HHH---------H--HGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             c--ccc---------c--ccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEee
Confidence            0  000         0  0357999999832  2455666789999999999999873

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.46  E-value=3.8e-07  Score=79.35  Aligned_cols=91  Identities=16%  Similarity=0.209  Sum_probs=66.8

Q ss_pred             HHHHHHHHhhhcCCCeeeeeee----------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcccc
Q 041970          204 KLCLLLLRSLIKGGELFLDYGT----------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNER  267 (327)
Q Consensus       204 ~lcLe~Le~~~~~g~~VLDvGc----------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~  267 (327)
                      +...++|.++..++.+|||+||                +|+++.+++.|++|+  .     ++.+.  .+|..       
T Consensus        24 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~v~~vD~s~~~~~~a~~~~--~-----~~~~~--~~d~~-------   87 (211)
T 2gs9_A           24 AEEERALKGLLPPGESLLEVGAGTGYWLRRLPYPQKVGVEPSEAMLAVGRRRA--P-----EATWV--RAWGE-------   87 (211)
T ss_dssp             HHHHHHHHTTCCCCSEEEEETCTTCHHHHHCCCSEEEEECCCHHHHHHHHHHC--T-----TSEEE--CCCTT-------
T ss_pred             HHHHHHHHHhcCCCCeEEEECCCCCHhHHhCCCCeEEEEeCCHHHHHHHHHhC--C-----CcEEE--Ecccc-------
Confidence            4455677777778889999999                899999999999986  2     23443  34431       


Q ss_pred             ccchhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeec
Q 041970          268 VDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       268 ~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                        ++          .. +.++||+|+++-..+   ....++..+.+.|||||+++++..
T Consensus        88 --~~----------~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  133 (211)
T 2gs9_A           88 --AL----------PF-PGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVL  133 (211)
T ss_dssp             --SC----------CS-CSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --cC----------CC-CCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEec
Confidence              00          11 256899999986433   246788899999999999999864

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.45  E-value=3.1e-07  Score=82.27  Aligned_cols=88  Identities=17%  Similarity=0.317  Sum_probs=63.4

Q ss_pred             HHHHHhhhc--CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970          207 LLLLRSLIK--GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN  265 (327)
Q Consensus       207 Le~Le~~~~--~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~  265 (327)
                      ...+.+++.  ++.+|||+||                   +|+++.+++.|++++.    . .++++.  .+|..     
T Consensus        33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~-~~~~~~--~~d~~-----  100 (253)
T 3g5l_A           33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----S-PVVCYE--QKAIE-----  100 (253)
T ss_dssp             HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----C-TTEEEE--ECCGG-----
T ss_pred             HHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----c-CCeEEE--Ecchh-----
Confidence            334444443  6788999999                   9999999999999875    1 345654  34431     


Q ss_pred             ccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEe
Q 041970          266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                          ++          .. +.++||+|+++-..+   ....++..+.+.|||||+++++
T Consensus       101 ----~~----------~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          101 ----DI----------AI-EPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             ----GC----------CC-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----hC----------CC-CCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence                11          11 257899999987543   3467889999999999999987

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.45  E-value=2.9e-07  Score=85.47  Aligned_cols=86  Identities=19%  Similarity=0.220  Sum_probs=63.7

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHh--cCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~l--Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      ..+++|||+||                    ||+||.+++.|++|+..  +++...++++.  .+|..         +.+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~--~~D~~---------~~l  142 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQ--VDDGF---------MHI  142 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEE--ESCSH---------HHH
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEE--ECcHH---------HHH
Confidence            35689999999                    99999999999999754  34544578875  45642         111


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChHH-------HHHHHHHHhhccCCCcEEEEe
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~v-------L~~L~p~i~~~LkpGG~LIlS  321 (327)
                      .        .  ..++||+|++|+....       ..++...+.++|+|||++++.
T Consensus       143 ~--------~--~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~  188 (275)
T 1iy9_A          143 A--------K--SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (275)
T ss_dssp             H--------T--CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             h--------h--CCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            0        1  1468999999986421       256788999999999999986

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.45  E-value=7e-07  Score=78.65  Aligned_cols=92  Identities=16%  Similarity=0.215  Sum_probs=66.9

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPS  262 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~  262 (327)
                      ...+...++|.++..++.+|||+||                  +|+++.+++.|+++.  .     ++.+.  .+|..  
T Consensus        25 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~--~-----~~~~~--~~d~~--   93 (239)
T 3bxo_A           25 AEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL--P-----DATLH--QGDMR--   93 (239)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC--T-----TCEEE--ECCTT--
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC--C-----CCEEE--ECCHH--
Confidence            3455667778777777889999999                  999999999999874  1     24443  34541  


Q ss_pred             CccccccchhhhcccccccCCCCCCCeeEEEEcC--C-----hHHHHHHHHHHhhccCCCcEEEEee
Q 041970          263 SMNERVDGIVEYLSSHKIRGISETEEYDVVIANI--L-----LNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       263 ~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANI--l-----a~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                                         .....++||+|++..  +     ...+..++..+.+.|+|||+++++-
T Consensus        94 -------------------~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A           94 -------------------DFRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             -------------------TCCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             -------------------HcccCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence                               011146899999532  1     1456778899999999999999973

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.44  E-value=1.4e-07  Score=83.95  Aligned_cols=88  Identities=15%  Similarity=0.129  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSM  264 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~  264 (327)
                      ..+.-.++..+..++.+|||+||                  +|+++.+++.|++|     .  .++++.  .+|..    
T Consensus        35 ~~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~--~~~~~~--~~d~~----  101 (226)
T 3m33_A           35 ELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN-----A--PHADVY--EWNGK----  101 (226)
T ss_dssp             THHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-----C--TTSEEE--ECCSC----
T ss_pred             HHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh-----C--CCceEE--Ecchh----
Confidence            34555666667788999999999                  99999999999998     1  234553  34541    


Q ss_pred             cccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          265 NERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                          +.+          +....++||+|++|.   ....++..+.+.|||||+|+.
T Consensus       102 ----~~~----------~~~~~~~fD~v~~~~---~~~~~l~~~~~~LkpgG~l~~  140 (226)
T 3m33_A          102 ----GEL----------PAGLGAPFGLIVSRR---GPTSVILRLPELAAPDAHFLY  140 (226)
T ss_dssp             ----SSC----------CTTCCCCEEEEEEES---CCSGGGGGHHHHEEEEEEEEE
T ss_pred             ----hcc----------CCcCCCCEEEEEeCC---CHHHHHHHHHHHcCCCcEEEE
Confidence                000          111146899999993   234566788899999999983

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.43  E-value=4.9e-07  Score=80.56  Aligned_cols=102  Identities=7%  Similarity=-0.004  Sum_probs=68.3

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPS  262 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~  262 (327)
                      .+..-++..+...+.++.+|||+||                  +|+++.+++.|++|+..     .++++.  .+|..  
T Consensus        41 ~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~--~~d~~--  111 (245)
T 3ggd_A           41 RAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTA-----ANISYR--LLDGL--  111 (245)
T ss_dssp             GTHHHHHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCC-----TTEEEE--ECCTT--
T ss_pred             HHHHHHHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcc-----cCceEE--ECccc--
Confidence            3444555555555678899999999                  99999999999998722     245554  45542  


Q ss_pred             CccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          263 SMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       263 ~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                             +....      ..+.....||+|++|-..+     ....++..+.+.|||||++++..+.
T Consensus       112 -------~~~~~------~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          112 -------VPEQA------AQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             -------CHHHH------HHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             -------ccccc------cccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence                   10000      0000012499999985432     4567899999999999998887543

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.43  E-value=3.2e-07  Score=91.99  Aligned_cols=96  Identities=16%  Similarity=0.151  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      +..+++..+|.  .++|++|||+||                     +|+++.+++.+++|++++|+.   +.+.  .+|.
T Consensus        88 ~ss~l~a~~L~--~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~---v~~~--~~Da  160 (464)
T 3m6w_A           88 PSAQAVGVLLD--PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP---LAVT--QAPP  160 (464)
T ss_dssp             TTTHHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC---CEEE--CSCH
T ss_pred             HHHHHHHHhcC--cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe---EEEE--ECCH
Confidence            34566666665  468899999999                     999999999999999999985   4543  4553


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHHHHHhhccCC
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLADHIVSYAKP  314 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~p~i~~~Lkp  314 (327)
                      .         ++.         .. ..++||+|++|..-                         .....++..+.++|||
T Consensus       161 ~---------~l~---------~~-~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp  221 (464)
T 3m6w_A          161 R---------ALA---------EA-FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP  221 (464)
T ss_dssp             H---------HHH---------HH-HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE
T ss_pred             H---------Hhh---------hh-ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            1         111         00 14689999998641                         2236788899999999


Q ss_pred             CcEEEEee
Q 041970          315 GAVVGISG  322 (327)
Q Consensus       315 GG~LIlSG  322 (327)
                      ||+|+.|-
T Consensus       222 GG~LvysT  229 (464)
T 3m6w_A          222 GGVLVYST  229 (464)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEEEEe
Confidence            99999874

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.42  E-value=6e-07  Score=90.17  Aligned_cols=101  Identities=16%  Similarity=0.128  Sum_probs=73.5

Q ss_pred             hhhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCC
Q 041970          200 HATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDR  258 (327)
Q Consensus       200 H~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d  258 (327)
                      -+...++..+|.-..++|.+|||+||                     +|+++.+++.+++|++++|+.  ++.+.  .+|
T Consensus       101 d~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~--nv~~~--~~D  176 (479)
T 2frx_A          101 EASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS--NVALT--HFD  176 (479)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC--SEEEE--CCC
T ss_pred             CHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--cEEEE--eCC
Confidence            35566666676533348999999999                     999999999999999999985  36653  455


Q ss_pred             CCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHHHHHhhccC
Q 041970          259 TFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLADHIVSYAK  313 (327)
Q Consensus       259 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~p~i~~~Lk  313 (327)
                      ..         .+.         .. ..++||+|++|..-                         .....++..+.++||
T Consensus       177 ~~---------~~~---------~~-~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk  237 (479)
T 2frx_A          177 GR---------VFG---------AA-VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALR  237 (479)
T ss_dssp             ST---------THH---------HH-STTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             HH---------Hhh---------hh-ccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcC
Confidence            42         110         00 14689999998531                         123467888999999


Q ss_pred             CCcEEEEeec
Q 041970          314 PGAVVGISGI  323 (327)
Q Consensus       314 pGG~LIlSGI  323 (327)
                      |||+|++|..
T Consensus       238 pGG~LvysTc  247 (479)
T 2frx_A          238 PGGTLVYSTC  247 (479)
T ss_dssp             EEEEEEEEES
T ss_pred             CCCEEEEecc
Confidence            9999999853

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.42  E-value=5.7e-07  Score=81.88  Aligned_cols=85  Identities=14%  Similarity=0.133  Sum_probs=64.0

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhc-C-CCCCcEEEEecCCCCCCCCccccccc
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALN-N-IGPKKMKLHLVPDRTFPSSMNERVDG  270 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lN-g-v~~~~v~v~~~~~d~~~~~~~g~~~~  270 (327)
                      +.+|.+|||+||                     +|+++.+++.|++|++.+ | +. +++++.  .+|..         +
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~-~~v~~~--~~d~~---------~  164 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP-DNWRLV--VSDLA---------D  164 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC-TTEEEE--CSCGG---------G
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCC-CcEEEE--ECchH---------h
Confidence            467889999999                     999999999999999988 5 43 456664  45542         0


Q ss_pred             hhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          271 IVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       271 l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      .          .+ +.++||+|++|+...  ..++..+.+.|+|||+++++..
T Consensus       165 ~----------~~-~~~~~D~v~~~~~~~--~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          165 S----------EL-PDGSVDRAVLDMLAP--WEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             C----------CC-CTTCEEEEEEESSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred             c----------CC-CCCceeEEEECCcCH--HHHHHHHHHhCCCCCEEEEEeC
Confidence            0          11 246899999998632  2567888999999999998753

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.42  E-value=2.5e-07  Score=88.76  Aligned_cols=117  Identities=16%  Similarity=0.169  Sum_probs=75.4

Q ss_pred             eeEEEccCcccCCCc-hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc
Q 041970          185 TNIILNPGLAFGTGE-HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       185 ~~I~idPG~AFGTG~-H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      ..+.+|+.+-+..-. +.-+.+...+.......+++|||+||                    ||+|+.+++.|++|+...
T Consensus        88 ~~l~ldg~~~~~~~de~~y~e~L~~l~l~~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~  167 (334)
T 1xj5_A           88 KVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDV  167 (334)
T ss_dssp             EEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHH
T ss_pred             eEEEECCEeecCcCcchHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhh
Confidence            456677655444332 22334333221111245689999999                    999999999999998753


Q ss_pred             --CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HH--HHHHHHHHhhccCC
Q 041970          244 --NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NP--LLQLADHIVSYAKP  314 (327)
Q Consensus       244 --gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~v--L~~L~p~i~~~Lkp  314 (327)
                        ++...++++.  .+|..         +.+.        .. ..++||+|++|...     ..  ...++..+.++|+|
T Consensus       168 ~~gl~~~rv~~~--~~D~~---------~~l~--------~~-~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkp  227 (334)
T 1xj5_A          168 AIGYEDPRVNLV--IGDGV---------AFLK--------NA-AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRP  227 (334)
T ss_dssp             HGGGGSTTEEEE--ESCHH---------HHHH--------TS-CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEE
T ss_pred             ccccCCCcEEEE--ECCHH---------HHHH--------hc-cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCC
Confidence              4533567775  35541         1110        11 14689999999751     11  36788899999999


Q ss_pred             CcEEEEe
Q 041970          315 GAVVGIS  321 (327)
Q Consensus       315 GG~LIlS  321 (327)
                      ||+|++.
T Consensus       228 gG~lv~~  234 (334)
T 1xj5_A          228 GGVVCTQ  234 (334)
T ss_dssp             EEEEEEE
T ss_pred             CcEEEEe
Confidence            9999985

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.42  E-value=6.3e-07  Score=85.66  Aligned_cols=82  Identities=21%  Similarity=0.289  Sum_probs=61.4

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      .++++|||+||                   +|+++ +++.|++|++.|++. +++++.  .+|..               
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~-~~v~~~--~~d~~---------------  109 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT-DRIVVI--PGKVE---------------  109 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCT-TTEEEE--ESCTT---------------
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCC-CcEEEE--Ecchh---------------
Confidence            47889999999                   99997 679999999999986 567775  35541               


Q ss_pred             ccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEe
Q 041970          276 SSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                            .+...++||+|+++...     +.+...+..+.++|||||+++++
T Consensus       110 ------~~~~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          110 ------EVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             ------TCCCSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             ------hCCCCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence                  11113689999999642     22345556788999999999854

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.42  E-value=7e-07  Score=84.69  Aligned_cols=83  Identities=18%  Similarity=0.257  Sum_probs=63.1

Q ss_pred             hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          214 IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       214 ~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      ..++++|||+||                   +|+++ +++.|++|++.|++. +++++.  .+|..         ++   
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~--~~d~~---------~~---   99 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFS-DKITLL--RGKLE---------DV---   99 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCT-TTEEEE--ESCTT---------TS---
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHHHHHHHHHcCCC-CCEEEE--ECchh---------hc---
Confidence            357889999999                   99995 899999999999997 578775  35541         11   


Q ss_pred             cccccccCCCCCCCeeEEEEcCCh------HHHHHHHHHHhhccCCCcEEEE
Q 041970          275 LSSHKIRGISETEEYDVVIANILL------NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla------~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                             .. +.++||+|++|.+.      ..+..++..+.++|||||+++.
T Consensus       100 -------~~-~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          100 -------HL-PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             -------CC-SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             -------cC-CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence                   11 24689999999642      2256677888999999999973

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.42  E-value=4.5e-07  Score=81.04  Aligned_cols=89  Identities=15%  Similarity=0.185  Sum_probs=63.2

Q ss_pred             HHHHHHHHhh-hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCC
Q 041970          204 KLCLLLLRSL-IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPS  262 (327)
Q Consensus       204 ~lcLe~Le~~-~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~  262 (327)
                      +.+.++++.+ ..++.+|||+||                    +|+++.+++.|++|.       .++.+.  .+|..  
T Consensus        20 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-------~~~~~~--~~d~~--   88 (259)
T 2p35_A           20 RPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-------PNTNFG--KADLA--   88 (259)
T ss_dssp             HHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-------TTSEEE--ECCTT--
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------CCcEEE--ECChh--
Confidence            3444555544 346778999999                    999999999999881       234443  34431  


Q ss_pred             CccccccchhhhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEee
Q 041970          263 SMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       263 ~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSG  322 (327)
                                         .....++||+|++|-..+.   ...++..+.+.|||||+++++-
T Consensus        89 -------------------~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A           89 -------------------TWKPAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             -------------------TCCCSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             -------------------hcCccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence                               0112568999999976543   4678889999999999999874

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.41  E-value=1.5e-07  Score=83.57  Aligned_cols=94  Identities=13%  Similarity=0.263  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee--------------------------ecCCHHHHHHHHHHHHhcCC---CCCcEEEE
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT--------------------------VDIDPQVIKSAHQNAALNNI---GPKKMKLH  253 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc--------------------------VDIDp~AV~~A~eNa~lNgv---~~~~v~v~  253 (327)
                      .+.++++|...++++.+|||+||                          +|+++.+++.|++|++.++.   ...++++.
T Consensus        71 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  150 (227)
T 1r18_A           71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV  150 (227)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE
Confidence            34556665545667778888888                          68999999999999988761   01246654


Q ss_pred             ecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                        .+|..        .            .+...++||+|+++.....   +...+.+.|||||+++++
T Consensus       151 --~~d~~--------~------------~~~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          151 --EGDGR--------K------------GYPPNAPYNAIHVGAAAPD---TPTELINQLASGGRLIVP  193 (227)
T ss_dssp             --ESCGG--------G------------CCGGGCSEEEEEECSCBSS---CCHHHHHTEEEEEEEEEE
T ss_pred             --ECCcc--------c------------CCCcCCCccEEEECCchHH---HHHHHHHHhcCCCEEEEE
Confidence              35531        0            1111368999999865443   336788999999999886

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.41  E-value=3.1e-07  Score=85.50  Aligned_cols=82  Identities=16%  Similarity=0.159  Sum_probs=57.8

Q ss_pred             hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          214 IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       214 ~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      +.+|.+|||+||                  +|+++.+++.|++|++.+.+   ...+.  ..+.          +.    
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v---~~~~~--~~~~----------~~----  103 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCV---TIDLL--DITA----------EI----  103 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCC---EEEEC--CTTS----------CC----
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccc---eeeee--eccc----------cc----
Confidence            357789999999                  99999999999999876622   12221  1110          00    


Q ss_pred             ccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEe
Q 041970          276 SSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                            .....++||+|++|...     ..+..++..+.++| |||++++|
T Consensus       104 ------~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          104 ------PKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             ------CGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             ------ccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence                  00014689999998643     34566788899999 99999998

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.41  E-value=5.1e-07  Score=84.29  Aligned_cols=85  Identities=20%  Similarity=0.232  Sum_probs=64.9

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .++.+|||+||                    +|++ .+++.|++|++.+++. +++++.  .+|..         +    
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~-~~v~~~--~~d~~---------~----  226 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVA-SRYHTI--AGSAF---------E----  226 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCG-GGEEEE--ESCTT---------T----
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCC-cceEEE--ecccc---------c----
Confidence            56789999999                    9999 9999999999999886 578775  45542         0    


Q ss_pred             cccccccCCCCCCCeeEEEEc-CCh----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          275 LSSHKIRGISETEEYDVVIAN-ILL----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvAN-Ila----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                            ..+  ...||+|+++ ++.    .....++..+.+.|+|||++++....
T Consensus       227 ------~~~--~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  273 (335)
T 2r3s_A          227 ------VDY--GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI  273 (335)
T ss_dssp             ------SCC--CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ------CCC--CCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence                  011  3359999994 443    34568889999999999988887554

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.41  E-value=2.9e-07  Score=87.28  Aligned_cols=84  Identities=13%  Similarity=0.247  Sum_probs=63.9

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .++.+|||+||                    +|+ +.+++.|++|++.+++. +++++.  .+|..        +     
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~--------~-----  244 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS-DRVDVV--EGDFF--------E-----  244 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT-TTEEEE--ECCTT--------S-----
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCC-CceEEE--eCCCC--------C-----
Confidence            46789999999                    677 99999999999999986 578775  45542        0     


Q ss_pred             cccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          275 LSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                             .+  ...||+|+++-..     .....++..+.+.|+|||++++....
T Consensus       245 -------~~--~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          245 -------PL--PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             -------CC--SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             -------CC--CCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence                   11  2349999886432     23357889999999999999987654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.40  E-value=8.3e-07  Score=79.03  Aligned_cols=84  Identities=15%  Similarity=0.111  Sum_probs=59.5

Q ss_pred             cCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          215 KGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       215 ~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      +++++|||+||                     +|+++.+++.+.+|++.|    .++++.  .+|...      ...+  
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~----~~v~~~--~~d~~~------~~~~--  141 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR----TNIIPV--IEDARH------PHKY--  141 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC----TTEEEE--CSCTTC------GGGG--
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc----CCeEEE--EcccCC------hhhh--
Confidence            45667777777                     899999999999999987    246653  456420      0000  


Q ss_pred             hcccccccCCCCCCCeeEEEEcCCh-HHHHHHHHHHhhccCCCcEEEEe
Q 041970          274 YLSSHKIRGISETEEYDVVIANILL-NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla-~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                              .. ..++||+|++|... +....++..+.+.|||||+++++
T Consensus       142 --------~~-~~~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          142 --------RM-LIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             --------GG-GCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------cc-cCCcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEE
Confidence                    00 14689999999863 33355678899999999999985

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.40  E-value=6.1e-07  Score=87.50  Aligned_cols=83  Identities=14%  Similarity=0.215  Sum_probs=62.3

Q ss_pred             CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc---------------CCCCCcEEEEecCCCCC
Q 041970          216 GGELFLDYGT--------------------VDIDPQVIKSAHQNAALN---------------NIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       216 ~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN---------------gv~~~~v~v~~~~~d~~  260 (327)
                      +|.+|||+||                    +|+|+.|++.|++|+++|               ++. + +++.  .+|+.
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~-i~v~--~~Da~  122 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-T-IVIN--HDDAN  122 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-E-EEEE--ESCHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-c-eEEE--cCcHH
Confidence            6889999999                    999999999999999999               775 2 6653  45541


Q ss_pred             CCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970          261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                               ++..        ..  .++||+|+.|+.. ....++..+.+.|++||+++++.
T Consensus       123 ---------~~~~--------~~--~~~fD~I~lDP~~-~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          123 ---------RLMA--------ER--HRYFHFIDLDPFG-SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             ---------HHHH--------HS--TTCEEEEEECCSS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------HHHH--------hc--cCCCCEEEeCCCC-CHHHHHHHHHHhcCCCCEEEEEe
Confidence                     1111        01  3579999999853 23456777788899999988764

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.39  E-value=5.6e-07  Score=84.66  Aligned_cols=88  Identities=22%  Similarity=0.302  Sum_probs=61.1

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHh--cCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~l--Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      ..+++|||+||                    +|+|+.+++.|++|+..  .+....++++.  .+|..         +..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~--~~D~~---------~~~  162 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVR--VGDGL---------AFV  162 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE--ESCHH---------HHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEE--ECcHH---------HHH
Confidence            46789999999                    99999999999998742  12223467765  35531         111


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChHH-----H--HHHHHHHhhccCCCcEEEEee
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLNP-----L--LQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~v-----L--~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      .        .. ..++||+|++|.....     +  ..++..+.++|||||+|++..
T Consensus       163 ~--------~~-~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  210 (304)
T 3bwc_A          163 R--------QT-PDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG  210 (304)
T ss_dssp             H--------SS-CTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             H--------hc-cCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            0        00 2568999999975322     1  577889999999999999853

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.39  E-value=2.7e-07  Score=85.20  Aligned_cols=88  Identities=22%  Similarity=0.234  Sum_probs=63.5

Q ss_pred             HHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          205 LCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       205 lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      -.+++|.++...+.+|||+||                  +|+++.+++.|+++        .++.+.  .++..      
T Consensus        28 ~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~--------~~v~~~--~~~~e------   91 (257)
T 4hg2_A           28 ALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRH--------PRVTYA--VAPAE------   91 (257)
T ss_dssp             HHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCC--------TTEEEE--ECCTT------
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhc--------CCceee--hhhhh------
Confidence            356788887777789999999                  99999999887642        235554  34431      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEEEcCChH--HHHHHHHHHhhccCCCcEEEEee
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~--vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                         ++          .+ ++++||+|+++-..+  .....+.++.++|||||+|++.+
T Consensus        92 ---~~----------~~-~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A           92 ---DT----------GL-PPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             ---CC----------CC-CSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---hh----------cc-cCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEE
Confidence               11          12 367899999985432  24567889999999999998865

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.39  E-value=4.8e-07  Score=80.01  Aligned_cols=84  Identities=19%  Similarity=0.236  Sum_probs=59.1

Q ss_pred             cCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          215 KGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       215 ~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      .++++|||+||                     +|+++.+++.+++|++.+    .++++.  .+|..         +...
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~----~~v~~~--~~d~~---------~~~~  136 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----RNIVPI--LGDAT---------KPEE  136 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----TTEEEE--ECCTT---------CGGG
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc----CCCEEE--EccCC---------Ccch
Confidence            45667777777                     899999999999999876    246654  35542         0000


Q ss_pred             hcccccccCCCCCCCeeEEEEcCChHHH-HHHHHHHhhccCCCcEEEEe
Q 041970          274 YLSSHKIRGISETEEYDVVIANILLNPL-LQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla~vL-~~L~p~i~~~LkpGG~LIlS  321 (327)
                            ....  .++||+|++|...... ..++..+.+.|||||+++++
T Consensus       137 ------~~~~--~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          137 ------YRAL--VPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             ------GTTT--CCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------hhcc--cCCceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence                  0011  3579999999874333 34488999999999999987

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.39  E-value=5.7e-07  Score=85.50  Aligned_cols=87  Identities=20%  Similarity=0.239  Sum_probs=61.5

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc--CCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALN--NIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN--gv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      ..+++|||+||                    +|+|+.+++.|++|+..+  ++...++++.  .+|..         +.+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~--~~D~~---------~~l  175 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF--CGDGF---------EFL  175 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEE--CSCHH---------HHH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEE--EChHH---------HHH
Confidence            45689999999                    999999999999998654  4433577775  45541         111


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChH-----HH--HHHHHHHhhccCCCcEEEEee
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLN-----PL--LQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~-----vL--~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      .        .  ..++||+|++|....     .+  ..++..+.++|+|||++++..
T Consensus       176 ~--------~--~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          176 K--------N--HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             H--------H--CTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             H--------h--cCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            0        0  256899999998521     12  577889999999999999863

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.37  E-value=7.1e-07  Score=79.82  Aligned_cols=83  Identities=17%  Similarity=0.252  Sum_probs=62.9

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhc-CCCCCcEEEEecCCCCCCCCccccccch
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALN-NIGPKKMKLHLVPDRTFPSSMNERVDGI  271 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lN-gv~~~~v~v~~~~~d~~~~~~~g~~~~l  271 (327)
                      +.++++|||+||                     +|+++.+++.|++|++.+ |.  +++++.  .+|..         +.
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~--~~v~~~--~~d~~---------~~  160 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV--ENVRFH--LGKLE---------EA  160 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC--CCEEEE--ESCGG---------GC
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC--CCEEEE--ECchh---------hc
Confidence            467889999999                     999999999999999998 73  457764  34541         00


Q ss_pred             hhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970          272 VEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       272 ~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                                .+ +.++||+|++|+...  ..++..+.+.|+|||++++..
T Consensus       161 ----------~~-~~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          161 ----------EL-EEAAYDGVALDLMEP--WKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             ----------CC-CTTCEEEEEEESSCG--GGGHHHHHHHEEEEEEEEEEE
T ss_pred             ----------CC-CCCCcCEEEECCcCH--HHHHHHHHHhCCCCCEEEEEe
Confidence                      12 246899999997532  256788899999999998864

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.37  E-value=1.1e-06  Score=79.37  Aligned_cols=103  Identities=20%  Similarity=0.187  Sum_probs=70.7

Q ss_pred             hhHHHHHHHHHhh-hcCCCeeeeeee---------------------ecCCHH------HHHHHHHHHHhcCCCCCcEEE
Q 041970          201 ATTKLCLLLLRSL-IKGGELFLDYGT---------------------VDIDPQ------VIKSAHQNAALNNIGPKKMKL  252 (327)
Q Consensus       201 ~TT~lcLe~Le~~-~~~g~~VLDvGc---------------------VDIDp~------AV~~A~eNa~lNgv~~~~v~v  252 (327)
                      ..++...++++.+ +++|++|||+||                     +|+++.      +++.|++|++.+++. +++++
T Consensus        27 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~-~~v~~  105 (275)
T 3bkx_A           27 RQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG-DRLTV  105 (275)
T ss_dssp             HHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG-GGEEE
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC-CceEE
Confidence            3445555566555 467899999999                     899997      999999999999885 56777


Q ss_pred             EecCCC-CCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEeecc
Q 041970          253 HLVPDR-TFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       253 ~~~~~d-~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .  .+| ..       ...+          .+ ..++||+|+++-....   ...+...+..+++|||+++++.+.
T Consensus       106 ~--~~d~~~-------~~~~----------~~-~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~  161 (275)
T 3bkx_A          106 H--FNTNLS-------DDLG----------PI-ADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWS  161 (275)
T ss_dssp             E--CSCCTT-------TCCG----------GG-TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred             E--ECChhh-------hccC----------CC-CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            5  343 21       0000          11 2578999999865422   234666777777889999997543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.36  E-value=9.1e-07  Score=80.05  Aligned_cols=89  Identities=16%  Similarity=0.170  Sum_probs=63.8

Q ss_pred             HHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970          204 KLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN  265 (327)
Q Consensus       204 ~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~  265 (327)
                      +...++|.+++.++.+|||+||                  +|+++.+++.|+++...     .   +.  .+|..     
T Consensus        42 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~-----~---~~--~~d~~-----  106 (260)
T 2avn_A           42 RLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-----N---VV--EAKAE-----  106 (260)
T ss_dssp             HHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS-----C---EE--ECCTT-----
T ss_pred             HHHHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCC-----C---EE--ECcHH-----
Confidence            3455667777667889999999                  99999999999988541     1   21  24431     


Q ss_pred             ccccchhhhcccccccCCCCCCCeeEEEEcC-ChHH---HHHHHHHHhhccCCCcEEEEee
Q 041970          266 ERVDGIVEYLSSHKIRGISETEEYDVVIANI-LLNP---LLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANI-la~v---L~~L~p~i~~~LkpGG~LIlSG  322 (327)
                          ++          .. +.++||+|+++- +.+.   ...++..+.+.|||||+++++.
T Consensus       107 ----~~----------~~-~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          107 ----DL----------PF-PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV  152 (260)
T ss_dssp             ----SC----------CS-CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----HC----------CC-CCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEe
Confidence                00          11 256899999974 2222   5778899999999999999864

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.36  E-value=6.9e-07  Score=84.48  Aligned_cols=86  Identities=23%  Similarity=0.329  Sum_probs=63.2

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHh-cC--CCCCcEEEEecCCCCCCCCccccccch
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAAL-NN--IGPKKMKLHLVPDRTFPSSMNERVDGI  271 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~l-Ng--v~~~~v~v~~~~~d~~~~~~~g~~~~l  271 (327)
                      ..+++|||+||                    ||+|+.+++.|++|+.. |+  ++..++++.  .+|..         +.
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~--~~D~~---------~~  144 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLV--IDDAR---------AY  144 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEE--ESCHH---------HH
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEE--EchHH---------HH
Confidence            45689999999                    99999999999999764 33  323567775  35541         11


Q ss_pred             hhhcccccccCCCCCCCeeEEEEcCChHH----------HHHHHHHHhhccCCCcEEEEe
Q 041970          272 VEYLSSHKIRGISETEEYDVVIANILLNP----------LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       272 ~~~~~~~~~~~~~~~~~fDlVvANIla~v----------L~~L~p~i~~~LkpGG~LIlS  321 (327)
                      +.        .  ..++||+|++|.....          ...++..+.++|+|||++++.
T Consensus       145 l~--------~--~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  194 (314)
T 1uir_A          145 LE--------R--TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (314)
T ss_dssp             HH--------H--CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             HH--------h--cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence            10        0  1568999999975432          367889999999999999876

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.36  E-value=2.4e-07  Score=78.82  Aligned_cols=84  Identities=8%  Similarity=0.207  Sum_probs=59.7

Q ss_pred             hcCCCeeeeeee----ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCe
Q 041970          214 IKGGELFLDYGT----VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEY  289 (327)
Q Consensus       214 ~~~g~~VLDvGc----VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~f  289 (327)
                      +++|++|||+||    +|+++.+++.|++++..|      +++.  .+|.         .++.       .... +.++|
T Consensus        10 ~~~g~~vL~~~~g~v~vD~s~~ml~~a~~~~~~~------~~~~--~~d~---------~~~~-------~~~~-~~~~f   64 (176)
T 2ld4_A           10 ISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNE------GRVS--VENI---------KQLL-------QSAH-KESSF   64 (176)
T ss_dssp             CCTTSEEEEEECTTSCHHHHHHHHHHHHHHTTTT------SEEE--EEEG---------GGGG-------GGCC-CSSCE
T ss_pred             CCCCCEEEEecCCceeeeCCHHHHHHHHHhcccC------cEEE--Eech---------hcCc-------cccC-CCCCE
Confidence            678999999999    999999999999886432      3333  2332         1110       0001 25689


Q ss_pred             eEEEEcCChHH----HHHHHHHHhhccCCCcEEEEee
Q 041970          290 DVVIANILLNP----LLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       290 DlVvANIla~v----L~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      |+|+++...+.    ...++..+.+.|||||+|+++.
T Consensus        65 D~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~  101 (176)
T 2ld4_A           65 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKE  101 (176)
T ss_dssp             EEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEc
Confidence            99999754332    3778999999999999999853

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.36  E-value=8e-07  Score=76.80  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=58.1

Q ss_pred             CCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccc
Q 041970          217 GELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSH  278 (327)
Q Consensus       217 g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~  278 (327)
                      +.+|||+||                  +|+++.+++.|++|.       .++++.  .+|..         ++       
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~--~~d~~---------~~-------   96 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH-------PSVTFH--HGTIT---------DL-------   96 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC-------TTSEEE--CCCGG---------GG-------
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-------CCCeEE--eCccc---------cc-------
Confidence            789999999                  999999999999882       134443  45541         11       


Q ss_pred             cccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeec
Q 041970          279 KIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       279 ~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                         .. ..++||+|+++-..     +....++..+.++|||||+++++-.
T Consensus        97 ---~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  142 (203)
T 3h2b_A           97 ---SD-SPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFF  142 (203)
T ss_dssp             ---GG-SCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ---cc-CCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence               11 25789999997542     2457789999999999999998754

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.36  E-value=1.2e-06  Score=84.62  Aligned_cols=84  Identities=15%  Similarity=0.124  Sum_probs=61.6

Q ss_pred             hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      ..+|.+|||+||                    +|+|+.+++.|++|++.+|+. +++++.  .+|..         ++. 
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~-~~i~~~--~~D~~---------~~~-  281 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVL-DKIKFI--QGDAT---------QLS-  281 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCG-GGCEEE--ECCGG---------GGG-
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCC-CceEEE--ECChh---------hCC-
Confidence            577899999999                    999999999999999999986 567764  45542         110 


Q ss_pred             hcccccccCCCCCCCeeEEEEcCCh-----------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          274 YLSSHKIRGISETEEYDVVIANILL-----------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla-----------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                               . ..++||+|++|+..           +.+..+...+.+.| +|+.++++
T Consensus       282 ---------~-~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~  329 (373)
T 3tm4_A          282 ---------Q-YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFIT  329 (373)
T ss_dssp             ---------G-TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEE
T ss_pred             ---------c-ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEE
Confidence                     1 24689999999762           33466778888888 44444443

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.35  E-value=9.8e-07  Score=81.98  Aligned_cols=85  Identities=18%  Similarity=0.206  Sum_probs=61.0

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhc-CC-------CCCcEEEEecCCCCCCCCcccc
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALN-NI-------GPKKMKLHLVPDRTFPSSMNER  267 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lN-gv-------~~~~v~v~~~~~d~~~~~~~g~  267 (327)
                      ..+++|||+||                   ||+|+.+++.|++|++.| ++       ...++++.  .+|..       
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~--~~D~~-------  144 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLT--IGDGF-------  144 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEE--ESCHH-------
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEE--ECchH-------
Confidence            45789999999                   999999999999998222 33       23567775  34531       


Q ss_pred             ccchhhhcccccccCCCCCCCeeEEEEcCCh-----HH--HHHHHHHHhhccCCCcEEEEe
Q 041970          268 VDGIVEYLSSHKIRGISETEEYDVVIANILL-----NP--LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       268 ~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~v--L~~L~p~i~~~LkpGG~LIlS  321 (327)
                        +.+.        .   .++||+|++|...     ..  ...++..+.++|+|||++++.
T Consensus       145 --~~l~--------~---~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          145 --EFIK--------N---NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             --HHHH--------H---CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             --HHhc--------c---cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence              1110        0   4679999999863     22  256788999999999999986

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.35  E-value=6e-07  Score=84.78  Aligned_cols=87  Identities=18%  Similarity=0.211  Sum_probs=62.9

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHh--cCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~l--Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      ..+++|||+||                    ||+|+.+++.|++|+..  +++...++++.  .+|..         +.+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~--~~Da~---------~~l  162 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLH--VGDGF---------EFM  162 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE--ESCHH---------HHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEE--ECcHH---------HHH
Confidence            45689999999                    99999999999999876  55533577775  35531         111


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChHH-------HHHHHHHHhhccCCCcEEEEee
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~v-------L~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      .        .  ..++||+|++|.....       ...++..+.++|+|||++++..
T Consensus       163 ~--------~--~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          163 K--------Q--NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             H--------T--CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             h--------h--CCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            0        1  1468999999976421       2457889999999999999864

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.35  E-value=5.6e-07  Score=79.48  Aligned_cols=80  Identities=15%  Similarity=0.276  Sum_probs=57.9

Q ss_pred             CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      ++.+|||+||                   +|+++.+++.|++++..+     ++++.  .+|..         ++     
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~--~~d~~---------~~-----  101 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT-----GITYE--RADLD---------KL-----  101 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS-----SEEEE--ECCGG---------GC-----
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC-----CceEE--EcChh---------hc-----
Confidence            5677888888                   999999999999886543     35553  34431         10     


Q ss_pred             cccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEee
Q 041970          277 SHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSG  322 (327)
                           .. +.++||+|+++-..+.   ...++..+.+.|+|||+++++-
T Consensus       102 -----~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          102 -----HL-PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             -----CC-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -----cC-CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence                 11 2568999999865432   4678889999999999999864

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.33  E-value=8e-07  Score=75.98  Aligned_cols=88  Identities=22%  Similarity=0.167  Sum_probs=62.2

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee-----------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT-----------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSS  263 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc-----------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~  263 (327)
                      |.|...+++|+....++++|||+||                 +|+++.+++.      .++     +++.  .+|..   
T Consensus         8 ~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~------~~~-----~~~~--~~d~~---   71 (170)
T 3q87_B            8 EDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES------HRG-----GNLV--RADLL---   71 (170)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT------CSS-----SCEE--ECSTT---
T ss_pred             ccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc------ccC-----CeEE--ECChh---
Confidence            6788999998875567889999999                 9999999988      222     3343  35542   


Q ss_pred             ccccccchhhhcccccccCCCCCCCeeEEEEcCChHH------------HHHHHHHHhhccCCCcEEEEeec
Q 041970          264 MNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP------------LLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       264 ~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v------------L~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                           +            .. ..++||+|++|.....            ...++..+.+.+ |||+++++..
T Consensus        72 -----~------------~~-~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~  124 (170)
T 3q87_B           72 -----C------------SI-NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI  124 (170)
T ss_dssp             -----T------------TB-CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred             -----h------------hc-ccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence                 0            11 1368999999986431            234556666666 9999998653

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.33  E-value=8.5e-07  Score=74.48  Aligned_cols=79  Identities=15%  Similarity=0.172  Sum_probs=59.6

Q ss_pred             hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          214 IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       214 ~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      ..++.+|||+||                  +|+++.+++.|+++     .  .++++.  .+| .               
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~--~~v~~~--~~d-~---------------   69 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK-----F--DSVITL--SDP-K---------------   69 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH-----C--TTSEEE--SSG-G---------------
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh-----C--CCcEEE--eCC-C---------------
Confidence            457789999999                  99999999999998     1  245553  222 1               


Q ss_pred             ccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          276 SSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                            .. ..++||+|+++-...   ....++..+.+.|||||+++++...
T Consensus        70 ------~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  114 (170)
T 3i9f_A           70 ------EI-PDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWR  114 (170)
T ss_dssp             ------GS-CTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ------CC-CCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcC
Confidence                  11 256899999986543   2467888999999999999998654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.33  E-value=1e-06  Score=78.59  Aligned_cols=84  Identities=18%  Similarity=0.196  Sum_probs=59.4

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      +++.+|||+||                    +|+++.+++.|++|++.+    .++.+.  .+|..         +... 
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~v~~~--~~d~~---------~~~~-  136 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER----ENIIPI--LGDAN---------KPQE-  136 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC----TTEEEE--ECCTT---------CGGG-
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC----CCeEEE--ECCCC---------Cccc-
Confidence            45678888888                    999999999999998776    246553  35541         0000 


Q ss_pred             cccccccCCCCCCCeeEEEEcCCh-HHHHHHHHHHhhccCCCcEEEEe
Q 041970          275 LSSHKIRGISETEEYDVVIANILL-NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla-~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                           ....  .++||+|+.++.. +....++..+.+.|||||+++++
T Consensus       137 -----~~~~--~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          137 -----YANI--VEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             -----GTTT--SCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----cccc--CccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence                 0011  3689999988643 33456788999999999999996

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.32  E-value=3.1e-06  Score=81.18  Aligned_cols=84  Identities=19%  Similarity=0.341  Sum_probs=64.6

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .++.+|||+||                    +|+ |.+++.|++++..+++. +++++.  .+|.+        +     
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~-~~v~~~--~~d~~--------~-----  263 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLA-DRCEIL--PGDFF--------E-----  263 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEE--ECCTT--------T-----
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcC-CceEEe--ccCCC--------C-----
Confidence            45689999999                    999 99999999999999886 678875  45642        0     


Q ss_pred             cccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          275 LSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                             ..  ...||+|+++-..     .....++..+.+.|+|||+|++....
T Consensus       264 -------~~--p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  309 (369)
T 3gwz_A          264 -------TI--PDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNL  309 (369)
T ss_dssp             -------CC--CSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred             -------CC--CCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence                   12  2379999885332     23457899999999999999987644

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.32  E-value=3e-06  Score=81.11  Aligned_cols=86  Identities=19%  Similarity=0.235  Sum_probs=65.1

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .++.+||||||                    +|+ |.+++.|++|++.+++. +++++.  .+|..        +.    
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~--------~~----  241 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGS-ERIHGH--GANLL--------DR----  241 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTG-GGEEEE--ECCCC--------SS----
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcc-cceEEE--Ecccc--------cc----
Confidence            46689999999                    899 99999999999988876 578875  46653        00    


Q ss_pred             ccccccc-CCCCCCCeeEEEEcC-C----hHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          275 LSSHKIR-GISETEEYDVVIANI-L----LNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       275 ~~~~~~~-~~~~~~~fDlVvANI-l----a~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                            . ++  .+.||+|+++- +    ......++..+.+.|||||+|++....
T Consensus       242 ------~~~~--p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (363)
T 3dp7_A          242 ------DVPF--PTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL  289 (363)
T ss_dssp             ------SCCC--CCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             ------CCCC--CCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence                  0 12  35799999853 3    234567889999999999999887643

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.32  E-value=1.2e-06  Score=82.74  Aligned_cols=94  Identities=19%  Similarity=0.310  Sum_probs=68.5

Q ss_pred             HHHHhh-hcC-CCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970          208 LLLRSL-IKG-GELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN  265 (327)
Q Consensus       208 e~Le~~-~~~-g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~  265 (327)
                      ++++.+ ..+ +.+||||||                    +|+ |.+++.|+++++.+++. +++++.  .+|..     
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~-----  239 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLG-GRVEFF--EKNLL-----  239 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCG-GGEEEE--ECCTT-----
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCC-CceEEE--eCCcc-----
Confidence            444443 234 789999999                    999 88999999999999886 678875  46653     


Q ss_pred             ccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                          +.         ... ..+.||+|+++-..     .....++..+.+.|+|||+|++....
T Consensus       240 ----~~---------~~~-~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (352)
T 3mcz_A          240 ----DA---------RNF-EGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT  289 (352)
T ss_dssp             ----CG---------GGG-TTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ----cC---------ccc-CCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence                00         000 14569999986443     24578899999999999999987643

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.30  E-value=1.2e-06  Score=80.85  Aligned_cols=80  Identities=14%  Similarity=0.118  Sum_probs=52.0

Q ss_pred             ecCCHHHHHHHHHHHHhc-CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH---H
Q 041970          226 VDIDPQVIKSAHQNAALN-NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---L  301 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lN-gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L  301 (327)
                      +|+++.+++.|+++++.. ++.  .+.+....++.         .++....    .... ..++||+|+++-..+.   .
T Consensus        88 vD~S~~ml~~a~~~~~~~~~~~--~v~~~~~~~~~---------~~~~~~~----~~~~-~~~~fD~V~~~~~l~~~~d~  151 (292)
T 2aot_A           88 VEPSAEQIAKYKELVAKTSNLE--NVKFAWHKETS---------SEYQSRM----LEKK-ELQKWDFIHMIQMLYYVKDI  151 (292)
T ss_dssp             ECSCHHHHHHHHHHHHTCSSCT--TEEEEEECSCH---------HHHHHHH----HTTT-CCCCEEEEEEESCGGGCSCH
T ss_pred             EeCCHHHHHHHHHHHHhccCCC--cceEEEEecch---------hhhhhhh----cccc-CCCceeEEEEeeeeeecCCH
Confidence            899999999999998754 443  34443222322         1110000    0001 2568999999865443   4


Q ss_pred             HHHHHHHhhccCCCcEEEEe
Q 041970          302 LQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       302 ~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ...+..+.++|||||+|+++
T Consensus       152 ~~~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          152 PATLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             HHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEEE
Confidence            56888999999999999986

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.29  E-value=1.3e-06  Score=78.80  Aligned_cols=75  Identities=12%  Similarity=0.068  Sum_probs=53.1

Q ss_pred             ecCCHHHHHHHHHHHHhc--------CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC
Q 041970          226 VDIDPQVIKSAHQNAALN--------NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL  297 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lN--------gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl  297 (327)
                      +|+++.+++.|++|++.|        ++.  ++++.  .+|+.         +.+        ......+.+|.|+.+..
T Consensus        79 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~--nv~~~--~~D~~---------~~l--------~~~~~~~~~d~v~~~~p  137 (246)
T 2vdv_E           79 MEIRVQVTNYVEDRIIALRNNTASKHGFQ--NINVL--RGNAM---------KFL--------PNFFEKGQLSKMFFCFP  137 (246)
T ss_dssp             EESCHHHHHHHHHHHHHHHHTC-CCSTTT--TEEEE--ECCTT---------SCG--------GGTSCTTCEEEEEEESC
T ss_pred             EEcCHHHHHHHHHHHHHHhhccccccCCC--cEEEE--eccHH---------HHH--------HHhccccccCEEEEECC
Confidence            899999999999999987        764  46664  46652         100        01112568999998864


Q ss_pred             hHHH-----------HHHHHHHhhccCCCcEEEEe
Q 041970          298 LNPL-----------LQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       298 a~vL-----------~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ....           ..++..+.++|+|||+|++.
T Consensus       138 ~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          138 DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             CCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            3211           46888999999999999885

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.28  E-value=5.8e-06  Score=79.65  Aligned_cols=74  Identities=11%  Similarity=0.068  Sum_probs=53.8

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--HHHHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--NPLLQ  303 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~vL~~  303 (327)
                      +|+|+.+++.|++|++.||+.  ++++.  .+|..        +.+         .. ...++||+|++|+..  ..+..
T Consensus       201 vDi~~~~l~~a~~~~~~~g~~--~v~~~--~~D~~--------~~l---------~~-~~~~~fD~Vi~~~p~~~~~~~~  258 (373)
T 2qm3_A          201 LDIDERLTKFIEKAANEIGYE--DIEIF--TFDLR--------KPL---------PD-YALHKFDTFITDPPETLEAIRA  258 (373)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCC--CEEEE--CCCTT--------SCC---------CT-TTSSCBSEEEECCCSSHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCC--CEEEE--EChhh--------hhc---------hh-hccCCccEEEECCCCchHHHHH
Confidence            999999999999999999985  57764  56652        001         00 013579999999753  23577


Q ss_pred             HHHHHhhccCCCcE-EEEe
Q 041970          304 LADHIVSYAKPGAV-VGIS  321 (327)
Q Consensus       304 L~p~i~~~LkpGG~-LIlS  321 (327)
                      ++..+.+.|||||+ ++++
T Consensus       259 ~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          259 FVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             HHHHHHHTBCSTTCEEEEE
T ss_pred             HHHHHHHHcccCCeEEEEE
Confidence            88899999999994 3554

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.28  E-value=1.7e-06  Score=85.71  Aligned_cols=106  Identities=20%  Similarity=0.195  Sum_probs=76.3

Q ss_pred             ccCCCc----hhhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCC
Q 041970          194 AFGTGE----HATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPK  248 (327)
Q Consensus       194 AFGTG~----H~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~  248 (327)
                      .|..|.    .+..+++..++.  .++|++|||+||                     +|+++.+++.+++|++.+|+.  
T Consensus       235 ~~~~G~~~~qd~~s~l~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~--  310 (450)
T 2yxl_A          235 AFNEGKIIVQEEASAVASIVLD--PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK--  310 (450)
T ss_dssp             HHHTTSEEECCHHHHHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC--
T ss_pred             hhhCceEEecCchhHHHHHhcC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC--
Confidence            355665    466777777664  568899999999                     999999999999999999985  


Q ss_pred             cEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHH
Q 041970          249 KMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQ  303 (327)
Q Consensus       249 ~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~  303 (327)
                      ++.+.  .+|..         +..        ..+ ..++||+|++|..-                         .....
T Consensus       311 ~v~~~--~~D~~---------~~~--------~~~-~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~  370 (450)
T 2yxl_A          311 IVKPL--VKDAR---------KAP--------EII-GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRE  370 (450)
T ss_dssp             SEEEE--CSCTT---------CCS--------SSS-CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHH
T ss_pred             cEEEE--EcChh---------hcc--------hhh-ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHH
Confidence            36654  45542         000        001 13679999997531                         11256


Q ss_pred             HHHHHhhccCCCcEEEEeec
Q 041970          304 LADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       304 L~p~i~~~LkpGG~LIlSGI  323 (327)
                      ++..+.++|||||+|++|..
T Consensus       371 iL~~a~~~LkpGG~lvy~tc  390 (450)
T 2yxl_A          371 LLESAARLVKPGGRLLYTTC  390 (450)
T ss_dssp             HHHHHHTTEEEEEEEEEEES
T ss_pred             HHHHHHHhcCCCcEEEEEeC
Confidence            78899999999999998753

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.28  E-value=1.5e-06  Score=82.62  Aligned_cols=83  Identities=18%  Similarity=0.242  Sum_probs=63.7

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .++.+|||+||                    +|+ +.+++.|++|++.+++. +++++.  .+|..        +     
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~--------~-----  243 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA-DRVTVA--EGDFF--------K-----  243 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEE--ECCTT--------S-----
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCC-CceEEE--eCCCC--------C-----
Confidence            46789999999                    899 99999999999999986 577775  45542        0     


Q ss_pred             cccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeec
Q 041970          275 LSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                             .+  ...||+|+++-..     .....++..+.+.|+|||++++..+
T Consensus       244 -------~~--~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          244 -------PL--PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             -------CC--SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             -------cC--CCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence                   11  2349999987543     2335788999999999999988765

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.27  E-value=1.7e-06  Score=81.27  Aligned_cols=83  Identities=14%  Similarity=0.158  Sum_probs=63.8

Q ss_pred             CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          216 GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       216 ~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      ++.+|||+||                    +|+ |.+++.|+++++..++. +++++.  .+|.+        +      
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~--------~------  230 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLS-GRAQVV--VGSFF--------D------  230 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEE--ECCTT--------S------
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcC-cCeEEe--cCCCC--------C------
Confidence            3568999999                    899 99999999999999886 678875  45642        0      


Q ss_pred             ccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          276 SSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                            ..  ..+||+|+++-..     +....++..+.+.|+|||+|++....
T Consensus       231 ------~~--p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  276 (332)
T 3i53_A          231 ------PL--PAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV  276 (332)
T ss_dssp             ------CC--CCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             ------CC--CCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence                  11  2279999985332     23578899999999999999987653

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.26  E-value=2.4e-06  Score=81.20  Aligned_cols=103  Identities=17%  Similarity=0.245  Sum_probs=71.6

Q ss_pred             cCCCchhhHH-HHHHHHHhh--hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEE
Q 041970          195 FGTGEHATTK-LCLLLLRSL--IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMK  251 (327)
Q Consensus       195 FGTG~H~TT~-lcLe~Le~~--~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~  251 (327)
                      |..+.+..++ ...+.+.+.  ..++.+|||+||                    +|+ |.+++.|++|++.+++. ++++
T Consensus       166 f~~~m~~~~~~~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~  243 (359)
T 1x19_A          166 YFEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMR  243 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCT-TTEE
T ss_pred             HHHHHHHhccchhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCC-CCEE
Confidence            4444444443 333333333  356789999999                    999 99999999999999886 5687


Q ss_pred             EEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeec
Q 041970          252 LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       252 v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      +.  .+|..         +            . +...+|+|+++-..     +....++..+.+.|||||++++...
T Consensus       244 ~~--~~d~~---------~------------~-~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~  296 (359)
T 1x19_A          244 GI--AVDIY---------K------------E-SYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  296 (359)
T ss_dssp             EE--ECCTT---------T------------S-CCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred             EE--eCccc---------c------------C-CCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            75  45652         0            0 12235999886443     2367789999999999999977654

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.25  E-value=1.1e-06  Score=86.67  Aligned_cols=72  Identities=24%  Similarity=0.346  Sum_probs=51.1

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-----
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-----  300 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-----  300 (327)
                      +|+|+.+++.|+.|+.++|+....+.+.  .+|.+.                     .....+||+|++|++...     
T Consensus       214 ~Ei~~~~~~lA~~nl~l~g~~~~~~~i~--~gD~l~---------------------~~~~~~fD~Iv~NPPf~~~~~~~  270 (445)
T 2okc_A          214 VDNTPLVVTLASMNLYLHGIGTDRSPIV--CEDSLE---------------------KEPSTLVDVILANPPFGTRPAGS  270 (445)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSSCCSEE--ECCTTT---------------------SCCSSCEEEEEECCCSSCCCTTC
T ss_pred             EeCCHHHHHHHHHHHHHhCCCcCCCCEe--eCCCCC---------------------CcccCCcCEEEECCCCCCccccc
Confidence            8999999999999999999852123333  466530                     011348999999976321     


Q ss_pred             ---------------HHHHHHHHhhccCCCcEEEE
Q 041970          301 ---------------LLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       301 ---------------L~~L~p~i~~~LkpGG~LIl  320 (327)
                                     -..++..+.++|+|||++++
T Consensus       271 ~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~  305 (445)
T 2okc_A          271 VDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  305 (445)
T ss_dssp             CCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             chhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence                           13567888899999998754

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.24  E-value=1.2e-06  Score=77.96  Aligned_cols=80  Identities=21%  Similarity=0.282  Sum_probs=57.9

Q ss_pred             hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          214 IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       214 ~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      ++++++|||+||                  +|+++.+++.|++|     +     ++.  .+|..         +..   
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-----~-----~~~--~~d~~---------~~~---   94 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK-----F-----NVV--KSDAI---------EYL---   94 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT-----S-----EEE--CSCHH---------HHH---
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh-----c-----cee--eccHH---------HHh---
Confidence            357789999999                  99999999999887     2     222  23321         111   


Q ss_pred             ccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEeec
Q 041970          276 SSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                           ..+ +.++||+|+++-..+     .+..++..+.+.|||||+++++..
T Consensus        95 -----~~~-~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (240)
T 3dli_A           95 -----KSL-PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESP  141 (240)
T ss_dssp             -----HTS-CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred             -----hhc-CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence                 012 257899999986543     457889999999999999998754

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.23  E-value=1.1e-06  Score=83.65  Aligned_cols=70  Identities=24%  Similarity=0.347  Sum_probs=51.4

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------  299 (327)
                      +|+|+.+++.|+.|+..+|+.   +.+.  .+|.+.                    .. ..++||+|++|+..+      
T Consensus       165 iDi~~~~~~~a~~n~~~~g~~---~~i~--~~D~l~--------------------~~-~~~~fD~Ii~NPPfg~~~~~~  218 (344)
T 2f8l_A          165 VDVDDLLISLALVGADLQRQK---MTLL--HQDGLA--------------------NL-LVDPVDVVISDLPVGYYPDDE  218 (344)
T ss_dssp             EESCHHHHHHHHHHHHHHTCC---CEEE--ESCTTS--------------------CC-CCCCEEEEEEECCCSEESCHH
T ss_pred             EECCHHHHHHHHHHHHhCCCC---ceEE--ECCCCC--------------------cc-ccCCccEEEECCCCCCcCchh
Confidence            899999999999999999873   3443  466530                    01 146899999998721      


Q ss_pred             ---------------HHHHHHHHHhhccCCCcEEEEe
Q 041970          300 ---------------PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       300 ---------------vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                                     ....++..+.++|+|||++++.
T Consensus       219 ~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v  255 (344)
T 2f8l_A          219 NAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL  255 (344)
T ss_dssp             HHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             hhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence                           1125678889999999987764

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.21  E-value=1.9e-06  Score=84.67  Aligned_cols=98  Identities=18%  Similarity=0.200  Sum_probs=73.0

Q ss_pred             hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          200 HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       200 H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      .+.++++..++.  .++|++|||+||                    +|+++.+++.+++|++.+|+.   +.+.  .+|.
T Consensus       232 d~~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~---~~~~--~~D~  304 (429)
T 1sqg_A          232 DASAQGCMTWLA--PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK---ATVK--QGDG  304 (429)
T ss_dssp             CHHHHTHHHHHC--CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC---CEEE--ECCT
T ss_pred             CHHHHHHHHHcC--CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC---eEEE--eCch
Confidence            667777777775  468899999999                    999999999999999999974   3443  3554


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------HHHHHHHHHHhhccCC
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------NPLLQLADHIVSYAKP  314 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------~vL~~L~p~i~~~Lkp  314 (327)
                      .         +...        .+ ..++||+|++|..-                         .....++..+.++|||
T Consensus       305 ~---------~~~~--------~~-~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp  366 (429)
T 1sqg_A          305 R---------YPSQ--------WC-GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT  366 (429)
T ss_dssp             T---------CTHH--------HH-TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE
T ss_pred             h---------hchh--------hc-ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            2         1100        01 13689999998631                         1225778899999999


Q ss_pred             CcEEEEee
Q 041970          315 GAVVGISG  322 (327)
Q Consensus       315 GG~LIlSG  322 (327)
                      ||+|++|.
T Consensus       367 GG~lvyst  374 (429)
T 1sqg_A          367 GGTLVYAT  374 (429)
T ss_dssp             EEEEEEEE
T ss_pred             CCEEEEEE
Confidence            99999986

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.21  E-value=2.7e-06  Score=73.84  Aligned_cols=74  Identities=18%  Similarity=0.189  Sum_probs=53.8

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      .++++|||+||                   +|+|+.+++.|++|++.|++   ++++.  .+|..               
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~--~~d~~---------------  107 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG---KFKVF--IGDVS---------------  107 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT---SEEEE--ESCGG---------------
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC---CEEEE--ECchH---------------
Confidence            46789999999                   99999999999999999987   35554  35541               


Q ss_pred             ccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEE
Q 041970          276 SSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVV  318 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~L  318 (327)
                            .+  .++||+|++|+..     .....++..+.+.+  ||.+
T Consensus       108 ------~~--~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~  145 (207)
T 1wy7_A          108 ------EF--NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVY  145 (207)
T ss_dssp             ------GC--CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEE
T ss_pred             ------Hc--CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEE
Confidence                  12  3489999999863     23345566666666  5544

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.21  E-value=2.3e-06  Score=79.65  Aligned_cols=87  Identities=21%  Similarity=0.217  Sum_probs=62.7

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcC--CCCCcEEEEecCCCCCCCCccccccchh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNN--IGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNg--v~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      ..+++|||+||                    +|+|+.+++.|++|+..++  +...++++.  .+|..         +.+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~--~~D~~---------~~l  145 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF--IEDAS---------KFL  145 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEE--ESCHH---------HHH
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEE--ECChH---------HHH
Confidence            45689999999                    9999999999999986543  223467765  35531         111


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCCh-----HHH--HHHHHHHhhccCCCcEEEEee
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILL-----NPL--LQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla-----~vL--~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      .        .  ..++||+|++|...     ..+  ..++..+.++|+|||++++..
T Consensus       146 ~--------~--~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          146 E--------N--VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             H--------H--CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             H--------h--CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            0        0  14689999998642     222  578889999999999999874

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.19  E-value=2.4e-06  Score=77.39  Aligned_cols=75  Identities=7%  Similarity=-0.005  Sum_probs=51.3

Q ss_pred             ecCCHHHHHHHHHHHHh------cCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH
Q 041970          226 VDIDPQVIKSAHQNAAL------NNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~l------Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~  299 (327)
                      +|+++.+++.|++|++.      ++..  ++++.  .+|+.        +.+..        .+ ..++||.|+.|..-.
T Consensus        76 iDis~~~l~~A~~~~~~l~~~~~~~~~--nv~~~--~~d~~--------~~l~~--------~~-~~~~~D~v~~~~~dp  134 (235)
T 3ckk_A           76 LEIRVKVSDYVQDRIRALRAAPAGGFQ--NIACL--RSNAM--------KHLPN--------FF-YKGQLTKMFFLFPDP  134 (235)
T ss_dssp             EESCHHHHHHHHHHHHHHHHSTTCCCT--TEEEE--ECCTT--------TCHHH--------HC-CTTCEEEEEEESCC-
T ss_pred             EECCHHHHHHHHHHHHHHHHHHhcCCC--eEEEE--ECcHH--------Hhhhh--------hC-CCcCeeEEEEeCCCc
Confidence            89999999999999864      4443  46664  45652        00100        01 257899999986432


Q ss_pred             HH-----------HHHHHHHhhccCCCcEEEEe
Q 041970          300 PL-----------LQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       300 vL-----------~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ..           ..++..+.++|||||.|+++
T Consensus       135 ~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          135 HFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             ----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence            21           36888999999999999875

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.19  E-value=2.6e-06  Score=78.07  Aligned_cols=85  Identities=13%  Similarity=0.129  Sum_probs=59.7

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      +++|++|||+||                     +|+++.+++.+++|++..+    ++...  .++..      ..... 
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~----ni~~V--~~d~~------~p~~~-  141 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR----NIFPI--LGDAR------FPEKY-  141 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT----TEEEE--ESCTT------CGGGG-
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc----CeeEE--EEecc------Ccccc-
Confidence            578999999999                     9999999999999986643    23322  23331      00000 


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCCh-HHHHHHHHHHhhccCCCcEEEEe
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILL-NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla-~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                               .. ..+.+|+|++.+.. +.-..++..+.+.|||||+++++
T Consensus       142 ---------~~-~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          142 ---------RH-LVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             ---------TT-TCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------cc-ccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence                     11 25689999998754 33345778899999999999986

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.18  E-value=1.6e-06  Score=79.08  Aligned_cols=78  Identities=22%  Similarity=0.224  Sum_probs=56.4

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .++.+|||+||                  +|+++.+++.|++++  .+     +.+.  .+|..                
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~--~~-----~~~~--~~d~~----------------  110 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY--PH-----LHFD--VADAR----------------  110 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC--TT-----SCEE--ECCTT----------------
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC--CC-----CEEE--ECChh----------------
Confidence            45678888888                  999999999999875  22     3332  24431                


Q ss_pred             cccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEee
Q 041970          277 SHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSG  322 (327)
                           .+...++||+|+++-..+.   ...++..+.+.|||||+++++-
T Consensus       111 -----~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          111 -----NFRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEF  154 (279)
T ss_dssp             -----TCCCSSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -----hCCcCCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEe
Confidence                 1112468999999876532   4578889999999999999864

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.18  E-value=1.4e-06  Score=83.42  Aligned_cols=102  Identities=14%  Similarity=0.223  Sum_probs=71.0

Q ss_pred             chhhHHHHHHHHHh---hhcCCC--eeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970          199 EHATTKLCLLLLRS---LIKGGE--LFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLH  253 (327)
Q Consensus       199 ~H~TT~lcLe~Le~---~~~~g~--~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~  253 (327)
                      .++-++++...+.-   ....++  +|||+||                    ||||+.+++.|++|+.++.  ..+++++
T Consensus        67 e~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~--~~rv~v~  144 (317)
T 3gjy_A           67 EFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR--APRVKIR  144 (317)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC--TTTEEEE
T ss_pred             hhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC--CCceEEE
Confidence            45566666666654   223345  9999999                    9999999999999987653  2467775


Q ss_pred             ecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HH--HHHHHHHhhccCCCcEEEEee
Q 041970          254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PL--LQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL--~~L~p~i~~~LkpGG~LIlSG  322 (327)
                        .+|..         +.+.        .. ..++||+|++|....     .+  .+++..+.++|+|||+|++.-
T Consensus       145 --~~Da~---------~~l~--------~~-~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          145 --VDDAR---------MVAE--------SF-TPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             --ESCHH---------HHHH--------TC-CTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --ECcHH---------HHHh--------hc-cCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence              35541         1111        11 246899999986432     22  578889999999999998754

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.17  E-value=4.5e-06  Score=76.32  Aligned_cols=85  Identities=15%  Similarity=0.140  Sum_probs=55.2

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      +++|++|||+||                     +|+++.+++...+.++.+    .++.+.  .+|..       .....
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r----~nv~~i--~~Da~-------~~~~~  140 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR----PNIFPL--LADAR-------FPQSY  140 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC----TTEEEE--ECCTT-------CGGGT
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCeEEE--Ecccc-------cchhh
Confidence            467888888888                     999999987666655543    124443  35542       00000


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChHHHHH-HHHHHhhccCCCcEEEEe
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLNPLLQ-LADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~vL~~-L~p~i~~~LkpGG~LIlS  321 (327)
                              ..+  .++||+|++|........ +...+.+.|||||+|++|
T Consensus       141 --------~~~--~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          141 --------KSV--VENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             --------TTT--CCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------hcc--ccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence                    011  468999999986543333 344555699999999988

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.17  E-value=1.8e-06  Score=77.73  Aligned_cols=89  Identities=11%  Similarity=0.081  Sum_probs=60.8

Q ss_pred             HHHhhhcCCCeeeeeee--------------------ecCC-HHHHHHH---HHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970          209 LLRSLIKGGELFLDYGT--------------------VDID-PQVIKSA---HQNAALNNIGPKKMKLHLVPDRTFPSSM  264 (327)
Q Consensus       209 ~Le~~~~~g~~VLDvGc--------------------VDID-p~AV~~A---~eNa~lNgv~~~~v~v~~~~~d~~~~~~  264 (327)
                      +++.+.+++++|||+||                    +|++ +.+++.|   ++|++.+++.  ++++.  .+|..    
T Consensus        17 ~~~~~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~--~v~~~--~~d~~----   88 (225)
T 3p2e_A           17 LTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS--NVVFV--IAAAE----   88 (225)
T ss_dssp             HHHHHTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS--SEEEE--CCBTT----
T ss_pred             HHHHhCCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC--CeEEE--EcCHH----
Confidence            33444567889999999                    9999 5555555   9999888875  36653  44541    


Q ss_pred             cccccchhhhcccccccCCCCCCCeeEEEEcCChHHH--------HHHHHHHhhccCCCcEEEE
Q 041970          265 NERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL--------LQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL--------~~L~p~i~~~LkpGG~LIl  320 (327)
                           ++.         . .....+|.|.+|......        ..++..+.++|||||++++
T Consensus        89 -----~l~---------~-~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           89 -----SLP---------F-ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             -----BCC---------G-GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             -----Hhh---------h-hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence                 110         0 013568889998753322        3467889999999999998

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.16  E-value=4e-06  Score=78.52  Aligned_cols=81  Identities=15%  Similarity=0.165  Sum_probs=62.7

Q ss_pred             Ceeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccc
Q 041970          218 ELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSS  277 (327)
Q Consensus       218 ~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~  277 (327)
                      .+|||+||                    +|+ |.+++.|++|++.+++. +++++.  .+|..                 
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~--~~d~~-----------------  227 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAG-ERVSLV--GGDML-----------------  227 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHT-TSEEEE--ESCTT-----------------
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCC-CcEEEe--cCCCC-----------------
Confidence            79999999                    999 99999999999888775 567764  45542                 


Q ss_pred             ccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          278 HKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       278 ~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                         ...  .++||+|+++-..     .....++..+.+.|+|||++++....
T Consensus       228 ---~~~--~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          228 ---QEV--PSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             ---TCC--CSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             ---CCC--CCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence               011  3579999986443     23458899999999999999987654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.15  E-value=5.2e-06  Score=72.99  Aligned_cols=86  Identities=10%  Similarity=0.125  Sum_probs=60.7

Q ss_pred             HHHHHHhhhcCCCeeeeeee--------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccch
Q 041970          206 CLLLLRSLIKGGELFLDYGT--------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGI  271 (327)
Q Consensus       206 cLe~Le~~~~~g~~VLDvGc--------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l  271 (327)
                      -+++|.++.. +.+|||+||              +|+++.+++.|++|    +     +++.  .+|..         ++
T Consensus        38 ~~~~l~~~~~-~~~vLDiG~G~G~~~~~l~~~~~vD~s~~~~~~a~~~----~-----~~~~--~~d~~---------~~   96 (219)
T 1vlm_A           38 ELQAVKCLLP-EGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKR----G-----VFVL--KGTAE---------NL   96 (219)
T ss_dssp             HHHHHHHHCC-SSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHT----T-----CEEE--ECBTT---------BC
T ss_pred             HHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHhccCCCHHHHHHHHhc----C-----CEEE--Ecccc---------cC
Confidence            3445655544 889999999              89999999999887    2     2332  23431         00


Q ss_pred             hhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeec
Q 041970          272 VEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       272 ~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                                .. ..++||+|+++-..+   ....++..+.+.|+|||+++++..
T Consensus        97 ----------~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  140 (219)
T 1vlm_A           97 ----------PL-KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIV  140 (219)
T ss_dssp             ----------CS-CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----------CC-CCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEe
Confidence                      11 246899999986533   236788899999999999999854

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.14  E-value=1.1e-05  Score=74.71  Aligned_cols=84  Identities=15%  Similarity=0.166  Sum_probs=53.9

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-----
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-----  300 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-----  300 (327)
                      +|+||.+++.|++++..+    .++++.  .+|...      ...+......  ...+ ...+||+|++|-..+.     
T Consensus       110 vD~sp~~l~~Ar~~~~~~----~~v~~~--~~D~~~------~~~~~~~~~~--~~~~-d~~~~d~v~~~~vlh~~~d~~  174 (274)
T 2qe6_A          110 VDIDPMVLTHGRALLAKD----PNTAVF--TADVRD------PEYILNHPDV--RRMI-DFSRPAAIMLVGMLHYLSPDV  174 (274)
T ss_dssp             EESSHHHHHHHHHHHTTC----TTEEEE--ECCTTC------HHHHHHSHHH--HHHC-CTTSCCEEEETTTGGGSCTTT
T ss_pred             EECChHHHHHHHHhcCCC----CCeEEE--EeeCCC------chhhhccchh--hccC-CCCCCEEEEEechhhhCCcHH
Confidence            999999999999998432    356654  466520      0000000000  0011 1247999999865432     


Q ss_pred             HHHHHHHHhhccCCCcEEEEeecc
Q 041970          301 LLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       301 L~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      ...++..+.+.|+|||+|+++-..
T Consensus       175 ~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          175 VDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             HHHHHHHHHHhCCCCcEEEEEEec
Confidence            567899999999999999998754

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.12  E-value=2.2e-06  Score=74.38  Aligned_cols=83  Identities=23%  Similarity=0.368  Sum_probs=56.3

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .++.+|||+||                  +|+++.+++.|+++   ..+     .+.  .++.         .++..   
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~-----~~~--~~~~---------~~~~~---  108 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA---GAG-----EVH--LASY---------AQLAE---  108 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT---CSS-----CEE--ECCH---------HHHHT---
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh---ccc-----ccc--hhhH---------Hhhcc---
Confidence            35688999999                  99999999999988   222     121  1232         11100   


Q ss_pred             cccccCCCCCCCeeEEEEcCChH--HHHHHHHHHhhccCCCcEEEEeec
Q 041970          277 SHKIRGISETEEYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~--vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                          .......+||+|+++-..+  ....++..+.+.|||||+++++..
T Consensus       109 ----~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          109 ----AKVPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             ----TCSCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ----cccccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEec
Confidence                0112245699999985433  345688899999999999999864

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.09  E-value=8.1e-06  Score=70.61  Aligned_cols=91  Identities=21%  Similarity=0.299  Sum_probs=56.9

Q ss_pred             cCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEec
Q 041970          195 FGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLV  255 (327)
Q Consensus       195 FGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~  255 (327)
                      |.|..+-+.+++..+......++++|||+||                   +|+++.+++.|++|++       ++++.  
T Consensus        30 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~--  100 (200)
T 1ne2_A           30 YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-------GVNFM--  100 (200)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-------TSEEE--
T ss_pred             cCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-------CCEEE--
Confidence            4455444455543332222346789999999                   9999999999999975       23443  


Q ss_pred             CCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHH-----HHHHHHHhhccCCCcEEE
Q 041970          256 PDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL-----LQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL-----~~L~p~i~~~LkpGG~LI  319 (327)
                      .+|..                     .+  .++||+|++|...+..     ..++..+.+.+  |+.++
T Consensus       101 ~~d~~---------------------~~--~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~  144 (200)
T 1ne2_A          101 VADVS---------------------EI--SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYS  144 (200)
T ss_dssp             ECCGG---------------------GC--CCCEEEEEECCCC-------CHHHHHHHHHHE--EEEEE
T ss_pred             ECcHH---------------------HC--CCCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEE
Confidence            34531                     12  3689999999875433     34566666666  44433

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.09  E-value=4e-06  Score=73.46  Aligned_cols=91  Identities=14%  Similarity=0.141  Sum_probs=59.8

Q ss_pred             HHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHH----HHhcCCCCCcEEEEecCCCC
Q 041970          204 KLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQN----AALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       204 ~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eN----a~lNgv~~~~v~v~~~~~d~  259 (327)
                      +..++++.  .+++.+|||+||                    +|+++.+++.+.++    ++.+++.  ++++.  .+|.
T Consensus        17 ~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~--~v~~~--~~d~   90 (218)
T 3mq2_A           17 DAEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP--NLLYL--WATA   90 (218)
T ss_dssp             HHHHHHHH--TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT--TEEEE--ECCS
T ss_pred             HHHHHHhh--ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC--ceEEE--ecch
Confidence            44455554  467889999999                    99999988764444    4445553  46664  4554


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHH--------HHHHHHHhhccCCCcEEEEe
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL--------LQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL--------~~L~p~i~~~LkpGG~LIlS  321 (327)
                      .         ++          .. ..+. |.|+.++....+        ..++..+.+.|||||+++++
T Consensus        91 ~---------~l----------~~-~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           91 E---------RL----------PP-LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             T---------TC----------CS-CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             h---------hC----------CC-CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            2         11          11 1334 777766543332        57889999999999999985

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.08  E-value=5.7e-06  Score=74.73  Aligned_cols=89  Identities=18%  Similarity=0.229  Sum_probs=61.9

Q ss_pred             hhHHHHHHHHHhhh-cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSLI-KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~~-~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      +..+...+++.+++ .++.+|||+||                    +|+++.+++.|+++.       .++.+.  .+|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~--~~d~  139 (269)
T 1p91_A           69 PLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------PQVTFC--VASS  139 (269)
T ss_dssp             HHHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------TTSEEE--ECCT
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-------CCcEEE--Ecch
Confidence            34445566666655 57789999999                    999999999998874       123343  2443


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      .         ++          .. ..++||+|+++-...    .+..+.+.|||||++++..
T Consensus       140 ~---------~~----------~~-~~~~fD~v~~~~~~~----~l~~~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          140 H---------RL----------PF-SDTSMDAIIRIYAPC----KAEELARVVKPGGWVITAT  178 (269)
T ss_dssp             T---------SC----------SB-CTTCEEEEEEESCCC----CHHHHHHHEEEEEEEEEEE
T ss_pred             h---------hC----------CC-CCCceeEEEEeCChh----hHHHHHHhcCCCcEEEEEE
Confidence            1         00          11 246899999986643    3577889999999999874

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.06  E-value=7.2e-06  Score=76.34  Aligned_cols=62  Identities=15%  Similarity=0.349  Sum_probs=46.7

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .++++|||+||                  +|+|+.+++.|++|++.++.. +++++.  .+|..                
T Consensus        27 ~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~--~~D~~----------------   87 (285)
T 1zq9_A           27 RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVA-SKLQVL--VGDVL----------------   87 (285)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEE--ESCTT----------------
T ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEE--Eccee----------------
Confidence            56789999999                  999999999999999887764 457764  46652                


Q ss_pred             cccccCCCCCCCeeEEEEcCChHHH
Q 041970          277 SHKIRGISETEEYDVVIANILLNPL  301 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~vL  301 (327)
                           .. ....||+|++|+..+..
T Consensus        88 -----~~-~~~~fD~vv~nlpy~~~  106 (285)
T 1zq9_A           88 -----KT-DLPFFDTCVANLPYQIS  106 (285)
T ss_dssp             -----TS-CCCCCSEEEEECCGGGH
T ss_pred             -----cc-cchhhcEEEEecCcccc
Confidence                 01 12379999999876543

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.05  E-value=2.3e-05  Score=70.40  Aligned_cols=106  Identities=15%  Similarity=0.090  Sum_probs=67.7

Q ss_pred             HHHhhhcCCCeeeeeee-----------------ecCCHHHHHHHHHHHHhcCC--CCCcEEEEecCCCCCCCC------
Q 041970          209 LLRSLIKGGELFLDYGT-----------------VDIDPQVIKSAHQNAALNNI--GPKKMKLHLVPDRTFPSS------  263 (327)
Q Consensus       209 ~Le~~~~~g~~VLDvGc-----------------VDIDp~AV~~A~eNa~lNgv--~~~~v~v~~~~~d~~~~~------  263 (327)
                      +|...+++.++||++||                 +|.|+.-.+.|++|.+.+|+  . ++++++.  +++....      
T Consensus        23 ~L~~~l~~a~~VLEiGtGySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~-~~I~~~~--gda~~~~~wg~p~   99 (202)
T 3cvo_A           23 ALRMAYEEAEVILEYGSGGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEG-TEVNIVW--TDIGPTGDWGHPV   99 (202)
T ss_dssp             HHHHHHHHCSEEEEESCSHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTT-CEEEEEE--CCCSSBCGGGCBS
T ss_pred             HHHHHhhCCCEEEEECchHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-CceEEEE--eCchhhhcccccc
Confidence            33334456678888888                 99999999999999999998  5 6788763  6642100      


Q ss_pred             -cc--ccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          264 -MN--ERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       264 -~~--g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                       ..  ....++..     ........++||+|+-.--...  .-++.+.++|+|||++++-.++
T Consensus       100 ~~~~~~~l~~~~~-----~i~~~~~~~~fDlIfIDg~k~~--~~~~~~l~~l~~GG~Iv~DNv~  156 (202)
T 3cvo_A          100 SDAKWRSYPDYPL-----AVWRTEGFRHPDVVLVDGRFRV--GCALATAFSITRPVTLLFDDYS  156 (202)
T ss_dssp             SSTTGGGTTHHHH-----GGGGCTTCCCCSEEEECSSSHH--HHHHHHHHHCSSCEEEEETTGG
T ss_pred             cchhhhhHHHHhh-----hhhccccCCCCCEEEEeCCCch--hHHHHHHHhcCCCeEEEEeCCc
Confidence             00  00000000     0001112378999998876443  4556677999999999887654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.05  E-value=3.2e-06  Score=78.24  Aligned_cols=80  Identities=14%  Similarity=-0.002  Sum_probs=59.1

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHh--cCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAAL--NNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~l--Ngv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      ..+++|||+||                  +|+|+.+++.|++|+..  +++...++++.  .+|..              
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~--~~D~~--------------  134 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHA--KQLLD--------------  134 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEE--SSGGG--------------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEE--echHH--------------
Confidence            34679999999                  99999999999998643  23333567775  34431              


Q ss_pred             cccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          275 LSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                             ..  .++||+|+++.. ++. .+...+.+.|+|||++++.
T Consensus       135 -------~~--~~~fD~Ii~d~~-dp~-~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          135 -------LD--IKKYDLIFCLQE-PDI-HRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             -------SC--CCCEEEEEESSC-CCH-HHHHHHHTTEEEEEEEEEE
T ss_pred             -------HH--HhhCCEEEECCC-ChH-HHHHHHHHhcCCCcEEEEE
Confidence                   11  167999999954 333 3788999999999999885

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.02  E-value=4.4e-06  Score=75.70  Aligned_cols=87  Identities=11%  Similarity=0.166  Sum_probs=60.7

Q ss_pred             HHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970          206 CLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN  265 (327)
Q Consensus       206 cLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~  265 (327)
                      ..+.+.+.+  .++.+|||+||                  +|+++.+++.|+++.        ++++.  .+|..     
T Consensus        22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~--------~~~~~--~~d~~-----   86 (261)
T 3ege_A           22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP--------QVEWF--TGYAE-----   86 (261)
T ss_dssp             HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT--------TEEEE--CCCTT-----
T ss_pred             HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc--------CCEEE--ECchh-----
Confidence            334444444  57889999999                  999999999887664        24553  35541     


Q ss_pred             ccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeec
Q 041970          266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                          ++          .+ +.++||+|+++-..+   ....++..+.+.|| ||++++...
T Consensus        87 ----~~----------~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A           87 ----NL----------AL-PDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             ----SC----------CS-CTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             ----hC----------CC-CCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence                10          11 257899999997543   34678899999999 998777643

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=97.97  E-value=3.1e-05  Score=75.56  Aligned_cols=70  Identities=19%  Similarity=0.132  Sum_probs=49.6

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------  298 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------  298 (327)
                      +|+|+.|++.|++|++.+|+. +++++.  .+|..         +            +....+||+||+|+..       
T Consensus       262 vDid~~al~~Ar~Na~~~gl~-~~I~~~--~~D~~---------~------------l~~~~~fD~Iv~NPPYG~rl~~~  317 (384)
T 3ldg_A          262 FDFDGRMVEIARKNAREVGLE-DVVKLK--QMRLQ---------D------------FKTNKINGVLISNPPYGERLLDD  317 (384)
T ss_dssp             EESCHHHHHHHHHHHHHTTCT-TTEEEE--ECCGG---------G------------CCCCCCSCEEEECCCCTTTTSCH
T ss_pred             EECCHHHHHHHHHHHHHcCCC-CceEEE--ECChH---------H------------CCccCCcCEEEECCchhhccCCH
Confidence            499999999999999999997 567764  45542         1            1123589999999873       


Q ss_pred             HHHHHHHHHHhhccCC--CcEEE
Q 041970          299 NPLLQLADHIVSYAKP--GAVVG  319 (327)
Q Consensus       299 ~vL~~L~p~i~~~Lkp--GG~LI  319 (327)
                      ..+..+...+.+.||+  ||.++
T Consensus       318 ~~l~~ly~~lg~~lk~~~g~~~~  340 (384)
T 3ldg_A          318 KAVDILYNEMGETFAPLKTWSQF  340 (384)
T ss_dssp             HHHHHHHHHHHHHHTTCTTSEEE
T ss_pred             HHHHHHHHHHHHHHhhCCCcEEE
Confidence            3455666666666655  76543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=97.96  E-value=2.6e-05  Score=73.08  Aligned_cols=71  Identities=18%  Similarity=0.324  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSM  264 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~  264 (327)
                      .+.+++.+.  ..++++|||+||                  +|+|+.+++.|++|++.+++.  ++++.  .+|..    
T Consensus        31 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~--~v~~~--~~D~~----  100 (299)
T 2h1r_A           31 LDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYN--NLEVY--EGDAI----  100 (299)
T ss_dssp             HHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCC--CEEC------CC----
T ss_pred             HHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCC--ceEEE--ECchh----
Confidence            344444432  357789999999                  999999999999999988874  46653  45542    


Q ss_pred             cccccchhhhcccccccCCCCCCCeeEEEEcCChHHH
Q 041970          265 NERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL  301 (327)
Q Consensus       265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL  301 (327)
                                       .. ...+||+|++|+.....
T Consensus       101 -----------------~~-~~~~~D~Vv~n~py~~~  119 (299)
T 2h1r_A          101 -----------------KT-VFPKFDVCTANIPYKIS  119 (299)
T ss_dssp             -----------------SS-CCCCCSEEEEECCGGGH
T ss_pred             -----------------hC-CcccCCEEEEcCCcccc
Confidence                             11 13479999999876543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.95  E-value=1.7e-05  Score=74.13  Aligned_cols=35  Identities=14%  Similarity=0.357  Sum_probs=28.4

Q ss_pred             CCCeeEEEE-cCCh----HHHHHHHHHHhhccCCCcEEEE
Q 041970          286 TEEYDVVIA-NILL----NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       286 ~~~fDlVvA-NIla----~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      .++||+|+| |.+.    ....+++..+.+.|+|||+|++
T Consensus       211 ~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          211 PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            468999999 4432    3457899999999999999987

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.92  E-value=4.7e-05  Score=72.11  Aligned_cols=98  Identities=13%  Similarity=0.092  Sum_probs=65.4

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      +..+++..+|.  .++|++|||+||                     +|+++.+++.+++|++++|+.  ++++.  .+|.
T Consensus        89 ~~s~l~~~~l~--~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~--~v~~~--~~D~  162 (309)
T 2b9e_A           89 RASCLPAMLLD--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS--CCELA--EEDF  162 (309)
T ss_dssp             TGGGHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEE--ECCG
T ss_pred             HHHHHHHHHhC--CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEE--eCCh
Confidence            34556666664  567889999999                     999999999999999999985  46654  4554


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh----------H-----------------HHHHHHHHHhhcc
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL----------N-----------------PLLQLADHIVSYA  312 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla----------~-----------------vL~~L~p~i~~~L  312 (327)
                      .         ++.        .......+||.|++|..-          +                 ...+++....+++
T Consensus       163 ~---------~~~--------~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l  225 (309)
T 2b9e_A          163 L---------AVS--------PSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP  225 (309)
T ss_dssp             G---------GSC--------TTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCT
T ss_pred             H---------hcC--------ccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            1         110        000001479999997431          1                 1124566666777


Q ss_pred             CCCcEEEEee
Q 041970          313 KPGAVVGISG  322 (327)
Q Consensus       313 kpGG~LIlSG  322 (327)
                      + ||+|+.|.
T Consensus       226 ~-gG~lvYsT  234 (309)
T 2b9e_A          226 S-LQRLVYST  234 (309)
T ss_dssp             T-CCEEEEEE
T ss_pred             C-CCEEEEEC
Confidence            6 99999875

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=97.91  E-value=8.4e-06  Score=70.79  Aligned_cols=79  Identities=20%  Similarity=0.222  Sum_probs=53.4

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .++.+|||+||                  +|+++.+++.|++|..         ++.  .+|..         +..    
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~---------~~~--~~d~~---------~~~----   86 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLD---------HVV--LGDIE---------TMD----   86 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSS---------EEE--ESCTT---------TCC----
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCC---------cEE--Ecchh---------hcC----
Confidence            35567777777                  9999999999887641         122  24431         000    


Q ss_pred             cccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEee
Q 041970          277 SHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSG  322 (327)
                          ..+ +.++||+|+++-..+.   ...++..+.+.|+|||+++++-
T Consensus        87 ----~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A           87 ----MPY-EEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI  130 (230)
T ss_dssp             ----CCS-CTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEE
T ss_pred             ----CCC-CCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence                011 2468999999854432   3578899999999999999874

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.85  E-value=1.1e-05  Score=72.85  Aligned_cols=96  Identities=9%  Similarity=0.059  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee------------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT------------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVP  256 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc------------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~  256 (327)
                      |.|...+..+-... ++++|||+||                        ||+++.+++.|+      +.. .++++.  .
T Consensus        67 p~~~~~l~~~l~~~-~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~-~~v~~~--~  136 (236)
T 2bm8_A           67 PDTQAVYHDMLWEL-RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDM-ENITLH--Q  136 (236)
T ss_dssp             HHHHHHHHHHHHHH-CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGC-TTEEEE--E
T ss_pred             HHHHHHHHHHHHhc-CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccC-CceEEE--E
Confidence            44444444433333 5689999999                        899999988887      122 356664  4


Q ss_pred             CCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhh-ccCCCcEEEEee
Q 041970          257 DRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVS-YAKPGAVVGISG  322 (327)
Q Consensus       257 ~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~-~LkpGG~LIlSG  322 (327)
                      +|...    .  ..+         ... ...+||+|+++.....+..++..+.+ +|||||+|+++.
T Consensus       137 gD~~~----~--~~l---------~~~-~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          137 GDCSD----L--TTF---------EHL-REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             CCSSC----S--GGG---------GGG-SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             Ccchh----H--HHH---------Hhh-ccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEe
Confidence            66520    0  000         001 13479999987654455667788886 999999999864

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=97.78  E-value=1e-05  Score=77.89  Aligned_cols=90  Identities=20%  Similarity=0.239  Sum_probs=54.8

Q ss_pred             CCchhhHHHHHHHHHhhhc--CCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970          197 TGEHATTKLCLLLLRSLIK--GGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLH  253 (327)
Q Consensus       197 TG~H~TT~lcLe~Le~~~~--~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~  253 (327)
                      .|.+-|-+...+++.+.+.  ++.+|||+||                     +|+|+.+++.|           .++.+.
T Consensus        18 ~g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------~~~~~~   86 (421)
T 2ih2_A           18 LGRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGI   86 (421)
T ss_dssp             ---CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEE
T ss_pred             CceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----------CCCcEE
Confidence            3445555555555554443  2456666666                     89999998776           134543


Q ss_pred             ecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--------------HH------------------H
Q 041970          254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--------------NP------------------L  301 (327)
Q Consensus       254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--------------~v------------------L  301 (327)
                        .+|..                     .....++||+|++|+..              ..                  .
T Consensus        87 --~~D~~---------------------~~~~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (421)
T 2ih2_A           87 --LADFL---------------------LWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLY  143 (421)
T ss_dssp             --ESCGG---------------------GCCCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHH
T ss_pred             --eCChh---------------------hcCccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHH
Confidence              35542                     11124689999999542              11                  2


Q ss_pred             HHHHHHHhhccCCCcEEEE
Q 041970          302 LQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       302 ~~L~p~i~~~LkpGG~LIl  320 (327)
                      ..++..+.++|+|||++++
T Consensus       144 ~~fl~~~~~~Lk~~G~~~~  162 (421)
T 2ih2_A          144 GAFLEKAVRLLKPGGVLVF  162 (421)
T ss_dssp             HHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEE
Confidence            2557788899999998876

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.76  E-value=3.1e-06  Score=79.99  Aligned_cols=125  Identities=12%  Similarity=0.038  Sum_probs=73.2

Q ss_pred             EEEcC-c-EEEEcCCC-CCceeEEEcc-CcccCC-CchhhHHHHHHHHHhhh--cCCCeeeeeee---------------
Q 041970          168 VEVTK-G-LWIVPEWN-VQATNIILNP-GLAFGT-GEHATTKLCLLLLRSLI--KGGELFLDYGT---------------  225 (327)
Q Consensus       168 ~~vg~-~-l~I~P~W~-~~~~~I~idP-G~AFGT-G~H~TT~lcLe~Le~~~--~~g~~VLDvGc---------------  225 (327)
                      +.+.+ . .+..|... .....|.++- .+.|-+ |.+    -..++|+.+.  .+|++|||+||               
T Consensus        34 V~Vng~~~~v~kp~~~V~~~d~I~v~g~~~~yvsrg~~----Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~  109 (291)
T 3hp7_A           34 VVNVINGERYDKPGEKIDDGTELKLKGEKLRYVSRGGL----KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAK  109 (291)
T ss_dssp             EEETTTCCBCCCTTCEEETTCCEEETTCCCCSSSTTHH----HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCS
T ss_pred             EEECCeEEEEccCCCCCCCCCEEEEcccccccccchHH----HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCC
Confidence            34544 3 34455543 1123466652 244543 333    2234444442  35789999999               


Q ss_pred             ----ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHH
Q 041970          226 ----VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPL  301 (327)
Q Consensus       226 ----VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL  301 (327)
                          +|+++.+++.+.++   +    .++... ...+.-         .+       ....+ +...||+|+++.....+
T Consensus       110 ~V~aVDvs~~mL~~a~r~---~----~rv~~~-~~~ni~---------~l-------~~~~l-~~~~fD~v~~d~sf~sl  164 (291)
T 3hp7_A          110 LVYAVDVGTNQLVWKLRQ---D----DRVRSM-EQYNFR---------YA-------EPVDF-TEGLPSFASIDVSFISL  164 (291)
T ss_dssp             EEEEECSSSSCSCHHHHT---C----TTEEEE-CSCCGG---------GC-------CGGGC-TTCCCSEEEECCSSSCG
T ss_pred             EEEEEECCHHHHHHHHHh---C----ccccee-cccCce---------ec-------chhhC-CCCCCCEEEEEeeHhhH
Confidence                99999999886543   1    233221 112210         00       00012 12359999999877777


Q ss_pred             HHHHHHHhhccCCCcEEEEe
Q 041970          302 LQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       302 ~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ..+++.+.++|+|||+|++.
T Consensus       165 ~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          165 NLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             GGTHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHHHcCcCCEEEEE
Confidence            88999999999999999885

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.74  E-value=0.0001  Score=75.03  Aligned_cols=75  Identities=17%  Similarity=0.187  Sum_probs=52.1

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-----
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-----  300 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-----  300 (327)
                      +|+|+.+++.|+.|+.++|+..+.+.+.  .+|.+..                ++.. ....+||+||+|++...     
T Consensus       254 ~Eid~~~~~lA~~Nl~l~gi~~~~~~I~--~gDtL~~----------------d~p~-~~~~~fD~IvaNPPf~~~~~~~  314 (542)
T 3lkd_A          254 QELNTSTYNLARMNMILHGVPIENQFLH--NADTLDE----------------DWPT-QEPTNFDGVLMNPPYSAKWSAS  314 (542)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCGGGEEEE--ESCTTTS----------------CSCC-SSCCCBSEEEECCCTTCCCCCC
T ss_pred             EECcHHHHHHHHHHHHHcCCCcCccceE--ecceecc----------------cccc-cccccccEEEecCCcCCccccc
Confidence            8999999999999999999853445554  4665310                0000 12568999999986310     


Q ss_pred             -----------H----------HHHHHHHhhccC-CCcEEE
Q 041970          301 -----------L----------LQLADHIVSYAK-PGAVVG  319 (327)
Q Consensus       301 -----------L----------~~L~p~i~~~Lk-pGG~LI  319 (327)
                                 .          ..++..+.++|+ |||++.
T Consensus       315 ~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a  355 (542)
T 3lkd_A          315 SGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMA  355 (542)
T ss_dssp             GGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEE
T ss_pred             hhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEE
Confidence                       0          135778889999 999874

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.73  E-value=4.9e-05  Score=66.51  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=26.5

Q ss_pred             CCeeEEEEcCCh--------------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          287 EEYDVVIANILL--------------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       287 ~~fDlVvANIla--------------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ++||+|++|...              .....++..+.++|||||.|++.
T Consensus        90 ~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k  138 (191)
T 3dou_A           90 EKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK  138 (191)
T ss_dssp             SSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            489999998632              12345677788999999999874

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.71  E-value=6.4e-05  Score=70.65  Aligned_cols=94  Identities=16%  Similarity=0.154  Sum_probs=58.4

Q ss_pred             Ceeeeeee-----------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          218 ELFLDYGT-----------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       218 ~~VLDvGc-----------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .+|||+||                       ||+||.+++.||+++..++.  .++++.  .+|+..      ...++..
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~--~~~~~v--~aD~~~------~~~~l~~  149 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE--GRTAYV--EADMLD------PASILDA  149 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS--SEEEEE--ECCTTC------HHHHHTC
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC--CcEEEE--EecccC------hhhhhcc
Confidence            68999999                       99999999999998865432  356654  466520      0000000


Q ss_pred             cccccccCCCCCCCeeEEEEcCChHHH------HHHHHHHhhccCCCcEEEEeecc
Q 041970          275 LSSHKIRGISETEEYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla~vL------~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      ...  ...+...+++ .|++|-+.+.+      ..++..+.+.|+|||+|++|-..
T Consensus       150 ~~~--~~~~D~~~p~-av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~  202 (277)
T 3giw_A          150 PEL--RDTLDLTRPV-ALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT  202 (277)
T ss_dssp             HHH--HTTCCTTSCC-EEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred             ccc--ccccCcCCcc-hHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence            000  0011112334 47778655433      46889999999999999998544

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.70  E-value=4.4e-05  Score=77.63  Aligned_cols=74  Identities=18%  Similarity=0.241  Sum_probs=51.3

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCC---cEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH--
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPK---KMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP--  300 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~---~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v--  300 (327)
                      +|+|+.+++.|+.|+.++|+..+   ++.+.  .+|.+.       ..            .....+||+||+|++...  
T Consensus       217 iEid~~~~~lA~~nl~l~gi~~~~~~~~~I~--~gDtL~-------~~------------~~~~~~fD~Vv~NPPf~~~~  275 (541)
T 2ar0_A          217 LELVPGTRRLALMNCLLHDIEGNLDHGGAIR--LGNTLG-------SD------------GENLPKAHIVATNPPFGSAA  275 (541)
T ss_dssp             EESCHHHHHHHHHHHHTTTCCCBGGGTBSEE--ESCTTS-------HH------------HHTSCCEEEEEECCCCTTCS
T ss_pred             EcCCHHHHHHHHHHHHHhCCCccccccCCeE--eCCCcc-------cc------------cccccCCeEEEECCCccccc
Confidence            89999999999999999998631   13332  356530       00            001468999999986321  


Q ss_pred             ---------------HHHHHHHHhhccCCCcEEEE
Q 041970          301 ---------------LLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       301 ---------------L~~L~p~i~~~LkpGG~LIl  320 (327)
                                     -..++..+.++|+|||++.+
T Consensus       276 ~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~  310 (541)
T 2ar0_A          276 GTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV  310 (541)
T ss_dssp             SCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             chhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEE
Confidence                           23567788899999998754

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.69  E-value=2.4e-05  Score=74.11  Aligned_cols=81  Identities=11%  Similarity=0.146  Sum_probs=54.9

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .++.+||||||                    +|+ +..+.  +++++..++. +++++.  .+|.+        +     
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~-~~v~~~--~~d~~--------~-----  243 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVA-GRWKVV--EGDFL--------R-----  243 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGT-TSEEEE--ECCTT--------T-----
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCC-CCeEEE--ecCCC--------C-----
Confidence            45779999999                    777 44444  4454445554 567764  45542        0     


Q ss_pred             cccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          275 LSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                             ..  . +||+|+++-..+     ....++..+.+.|||||+|++....
T Consensus       244 -------~~--p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~  288 (348)
T 3lst_A          244 -------EV--P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAV  288 (348)
T ss_dssp             -------CC--C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred             -------CC--C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence                   12  3 899999864332     3367899999999999999887643

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.69  E-value=1.7e-05  Score=65.46  Aligned_cols=40  Identities=13%  Similarity=0.132  Sum_probs=31.1

Q ss_pred             CCCeeEEEEcCChH--------------HHHHHHHHHhhccCCCcEEEEeeccC
Q 041970          286 TEEYDVVIANILLN--------------PLLQLADHIVSYAKPGAVVGISGILS  325 (327)
Q Consensus       286 ~~~fDlVvANIla~--------------vL~~L~p~i~~~LkpGG~LIlSGIl~  325 (327)
                      .++||+|++|....              ....++..+.++|+|||+++++....
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            46899999986521              12578889999999999999986543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=97.69  E-value=1.9e-05  Score=76.30  Aligned_cols=81  Identities=14%  Similarity=0.165  Sum_probs=55.0

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .++.+|||+||                  +|+++.+++.|+++    ++..   .    ....    ..+....+     
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~~~~---~----~~~~----~~~~~~~l-----  165 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----GIRV---R----TDFF----EKATADDV-----  165 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----TCCE---E----CSCC----SHHHHHHH-----
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----CCCc---c----eeee----chhhHhhc-----
Confidence            46789999999                  99999999998876    4431   1    0110    00100111     


Q ss_pred             cccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEe
Q 041970          277 SHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlS  321 (327)
                           .. ..++||+|+++-..+.   ...++..+.++|||||+++++
T Consensus       166 -----~~-~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~  207 (416)
T 4e2x_A          166 -----RR-TEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFE  207 (416)
T ss_dssp             -----HH-HHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----cc-CCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence                 01 1478999999865433   467888999999999999986

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=97.66  E-value=0.00011  Score=74.69  Aligned_cols=96  Identities=16%  Similarity=0.181  Sum_probs=63.9

Q ss_pred             HHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccc
Q 041970          207 LLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERV  268 (327)
Q Consensus       207 Le~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~  268 (327)
                      ...+.+.+..+.+||||||                  ||.++.+|+.|+..++.+|.-  .+++.+  +++         
T Consensus        57 ~~~~~~~~~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~--~~~~~~--~~~---------  123 (569)
T 4azs_A           57 YDNLSRALGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDF--AAEFRV--GRI---------  123 (569)
T ss_dssp             HHHHHHHHTSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTS--EEEEEE--CCH---------
T ss_pred             HHHHHhhcCCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCC--ceEEEE--CCH---------
Confidence            3445555556779999999                  999999999999999988742  355542  332         


Q ss_pred             cchhhhcccccccCCCCCCCeeEEEEcCChHHHHH-----HHHHHhhccCCCcEEEEeecc
Q 041970          269 DGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQ-----LADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       269 ~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~-----L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .++.+        .. ..++||+|+|.-..+.+..     -+-.+.+.|+++|..++-.|.
T Consensus       124 ~~~~~--------~~-~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~  175 (569)
T 4azs_A          124 EEVIA--------AL-EEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELA  175 (569)
T ss_dssp             HHHHH--------HC-CTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred             HHHhh--------hc-cCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEEec
Confidence            22221        01 2568999999976655432     123456667788877766654

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.61  E-value=9e-05  Score=75.50  Aligned_cols=72  Identities=18%  Similarity=0.167  Sum_probs=51.1

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-----
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-----  300 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-----  300 (327)
                      +|+|+.+++.|+.|+.++|+.. .+.+  ..+|.+.       .            ......+||+||+|++...     
T Consensus       289 ~Eid~~~~~lA~~Nl~l~gi~~-~i~i--~~gDtL~-------~------------~~~~~~~fD~Iv~NPPf~~~~~~~  346 (544)
T 3khk_A          289 QESNPTTWKLAAMNMVIRGIDF-NFGK--KNADSFL-------D------------DQHPDLRADFVMTNPPFNMKDWWH  346 (544)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCCC-BCCS--SSCCTTT-------S------------CSCTTCCEEEEEECCCSSCCSCCC
T ss_pred             EeCCHHHHHHHHHHHHHhCCCc-ccce--eccchhc-------C------------cccccccccEEEECCCcCCccccc
Confidence            8999999999999999999873 3322  3566530       0            0112468999999986432     


Q ss_pred             ---------------------------HHHHHHHHhhccCCCcEEE
Q 041970          301 ---------------------------LLQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       301 ---------------------------L~~L~p~i~~~LkpGG~LI  319 (327)
                                                 -..++..+.++|+|||++.
T Consensus       347 ~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a  392 (544)
T 3khk_A          347 EKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMA  392 (544)
T ss_dssp             GGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEE
T ss_pred             hhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEE
Confidence                                       0146778889999999853

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.59  E-value=8.7e-05  Score=73.42  Aligned_cols=39  Identities=15%  Similarity=0.218  Sum_probs=31.9

Q ss_pred             CCCeeEEEEcCCh--HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          286 TEEYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       286 ~~~fDlVvANIla--~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .++||+|++|...  ......+..+.++|||||+|+++.+.
T Consensus       286 d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          286 YGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             HCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             cCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            3689999998643  33566788999999999999998775

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.56  E-value=3.7e-06  Score=76.29  Aligned_cols=81  Identities=9%  Similarity=0.042  Sum_probs=48.0

Q ss_pred             CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      +|++|||+||                   +|+++.+++.|++|....       .+. ...+..      ...       
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~-------~~~-~~~~~~------~~~-------   95 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERV-------VVM-EQFNFR------NAV-------   95 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTE-------EEE-CSCCGG------GCC-------
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccc-------ccc-ccceEE------EeC-------
Confidence            4679999999                   999999999987764322       111 011110      000       


Q ss_pred             cccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          277 SHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                         ...+. ...||.+.++.....+..+++.+.+.|||||++++.
T Consensus        96 ---~~~~~-~~~~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A           96 ---LADFE-QGRPSFTSIDVSFISLDLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             ---GGGCC-SCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             ---HhHcC-cCCCCEEEEEEEhhhHHHHHHHHHHhccCCCEEEEE
Confidence               00010 112344444433333377889999999999999884

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.51  E-value=4.1e-05  Score=72.26  Aligned_cols=36  Identities=11%  Similarity=0.221  Sum_probs=26.8

Q ss_pred             CCCeeEEEEcCChH-------H--HHHHHHHHhhccCCCcEEEEe
Q 041970          286 TEEYDVVIANILLN-------P--LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       286 ~~~fDlVvANIla~-------v--L~~L~p~i~~~LkpGG~LIlS  321 (327)
                      .++||+|+||....       .  ....+..+.++|||||.|++.
T Consensus       146 ~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          146 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            46899999986531       1  114567788999999999885

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.51  E-value=6.1e-05  Score=71.00  Aligned_cols=38  Identities=13%  Similarity=0.235  Sum_probs=30.4

Q ss_pred             CCCeeEEEEcCCh--------------HHHHHHHHHHhhccCCCcEEEEeec
Q 041970          286 TEEYDVVIANILL--------------NPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       286 ~~~fDlVvANIla--------------~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      .++||+|++|...              ..+..++..+.++|||||+|++..+
T Consensus       121 ~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~  172 (290)
T 2xyq_A          121 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT  172 (290)
T ss_dssp             SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            3679999999642              2355788999999999999998654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.51  E-value=0.00011  Score=62.98  Aligned_cols=38  Identities=11%  Similarity=0.288  Sum_probs=28.1

Q ss_pred             CCCeeEEEEcCCh--------HH------HHHHHHHHhhccCCCcEEEEeec
Q 041970          286 TEEYDVVIANILL--------NP------LLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       286 ~~~fDlVvANIla--------~v------L~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      .++||+|++|...        +.      ...++..+.+.|||||+|+++-.
T Consensus       104 ~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (201)
T 2plw_A          104 DKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY  155 (201)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence            4689999998642        11      12367788999999999998643

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.50  E-value=0.00054  Score=71.72  Aligned_cols=73  Identities=23%  Similarity=0.301  Sum_probs=48.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-------
Q 041970          227 DIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-------  299 (327)
Q Consensus       227 DIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-------  299 (327)
                      |+|+.|++.|++|++++|+. +.+.+.  .+|..         ++.         .....++||+||+|++.+       
T Consensus       263 Did~~av~~A~~N~~~agv~-~~i~~~--~~D~~---------~~~---------~~~~~~~~d~Iv~NPPYG~Rlg~~~  321 (703)
T 3v97_A          263 DSDARVIQRARTNARLAGIG-ELITFE--VKDVA---------QLT---------NPLPKGPYGTVLSNPPYGERLDSEP  321 (703)
T ss_dssp             ESCHHHHHHHHHHHHHTTCG-GGEEEE--ECCGG---------GCC---------CSCTTCCCCEEEECCCCCC---CCH
T ss_pred             ECCHHHHHHHHHHHHHcCCC-CceEEE--ECChh---------hCc---------cccccCCCCEEEeCCCccccccchh
Confidence            89999999999999999997 567765  46642         110         000123799999998742       


Q ss_pred             HHHHHHHH---HhhccCCCcEEEE
Q 041970          300 PLLQLADH---IVSYAKPGAVVGI  320 (327)
Q Consensus       300 vL~~L~p~---i~~~LkpGG~LIl  320 (327)
                      .+..+...   ..+.+.|||.+++
T Consensus       322 ~l~~ly~~l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          322 ALIALHSLLGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHhhCCCCeEEE
Confidence            33444433   3444558987654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.42  E-value=0.00037  Score=66.51  Aligned_cols=83  Identities=24%  Similarity=0.326  Sum_probs=59.0

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .+..+|+||||                    .|. |..++.|+++++..+.  +||++.  .+|.+.             
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~--~rv~~~--~gD~~~-------------  239 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEE--EQIDFQ--EGDFFK-------------  239 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--C--CSEEEE--ESCTTT-------------
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhccc--Cceeee--cCcccc-------------
Confidence            45679999999                    565 8899999999876553  678875  577530             


Q ss_pred             cccccccCCCCCCCeeEEEE-cCCh----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          275 LSSHKIRGISETEEYDVVIA-NILL----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvA-NIla----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                             .  +...+|+|+. |++.    +....++..+++.|+|||++++...+
T Consensus       240 -------~--~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~  285 (353)
T 4a6d_A          240 -------D--PLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESL  285 (353)
T ss_dssp             -------S--CCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             -------C--CCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence                   0  1335798876 5654    23567889999999999988876543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.41  E-value=0.00071  Score=62.27  Aligned_cols=71  Identities=14%  Similarity=0.236  Sum_probs=47.7

Q ss_pred             hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          214 IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       214 ~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      ..+|++|||+||                  +|+|+.+++.+++|++.  .  .++++.  .+|....       ++    
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~--~--~~v~~i--~~D~~~~-------~~----   89 (255)
T 3tqs_A           27 PQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ--Q--KNITIY--QNDALQF-------DF----   89 (255)
T ss_dssp             CCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT--C--TTEEEE--ESCTTTC-------CG----
T ss_pred             CCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh--C--CCcEEE--EcchHhC-------CH----
Confidence            357889999999                  99999999999999865  1  356664  5776310       00    


Q ss_pred             ccccccCCCCCCCeeEEEEcCChHHHHHHHHH
Q 041970          276 SSHKIRGISETEEYDVVIANILLNPLLQLADH  307 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~  307 (327)
                           ......++|| ||+|+...+-..++-.
T Consensus        90 -----~~~~~~~~~~-vv~NlPY~is~~il~~  115 (255)
T 3tqs_A           90 -----SSVKTDKPLR-VVGNLPYNISTPLLFH  115 (255)
T ss_dssp             -----GGSCCSSCEE-EEEECCHHHHHHHHHH
T ss_pred             -----HHhccCCCeE-EEecCCcccCHHHHHH
Confidence                 1111135788 9999987665444333

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.38  E-value=0.00033  Score=66.03  Aligned_cols=63  Identities=14%  Similarity=0.294  Sum_probs=45.0

Q ss_pred             hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          214 IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       214 ~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      +.++++|||+||                  ||+|+.+++.|++|++.  .  .++++.  .+|..         ++    
T Consensus        48 ~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~--~--~~v~vi--~gD~l---------~~----  108 (295)
T 3gru_A           48 LTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL--Y--NNIEII--WGDAL---------KV----  108 (295)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH--C--SSEEEE--ESCTT---------TS----
T ss_pred             CCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc--C--CCeEEE--ECchh---------hC----
Confidence            356789999999                  99999999999999873  2  346664  46653         00    


Q ss_pred             ccccccCCCCCCCeeEEEEcCChHHHH
Q 041970          276 SSHKIRGISETEEYDVVIANILLNPLL  302 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~vL~  302 (327)
                            .+ +..+||+|++|+...+-.
T Consensus       109 ------~~-~~~~fD~Iv~NlPy~is~  128 (295)
T 3gru_A          109 ------DL-NKLDFNKVVANLPYQISS  128 (295)
T ss_dssp             ------CG-GGSCCSEEEEECCGGGHH
T ss_pred             ------Cc-ccCCccEEEEeCcccccH
Confidence                  11 134699999998865433

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.38  E-value=0.00013  Score=63.42  Aligned_cols=38  Identities=18%  Similarity=0.361  Sum_probs=30.4

Q ss_pred             CCCeeEEEEcCCh--HHHHHHHHHHhhccCCCcEEEEeec
Q 041970          286 TEEYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       286 ~~~fDlVvANIla--~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      .++||+|+++-..  .....++..+.+.|+|||+++++..
T Consensus       113 ~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~  152 (215)
T 2zfu_A          113 DESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEV  152 (215)
T ss_dssp             TTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEc
Confidence            5689999998543  2346778899999999999999754

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.36  E-value=3.5e-05  Score=71.83  Aligned_cols=37  Identities=14%  Similarity=0.085  Sum_probs=27.1

Q ss_pred             CCCeeEEEEcCC---h----HHH--HHHHHHHhhccCCCc--EEEEee
Q 041970          286 TEEYDVVIANIL---L----NPL--LQLADHIVSYAKPGA--VVGISG  322 (327)
Q Consensus       286 ~~~fDlVvANIl---a----~vL--~~L~p~i~~~LkpGG--~LIlSG  322 (327)
                      .++||+|++|..   .    +..  ..+++.+.++|||||  .|++.-
T Consensus       146 ~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          146 PFQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CCCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            568999999864   1    111  136788889999999  998853

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.33  E-value=0.00023  Score=75.74  Aligned_cols=74  Identities=9%  Similarity=0.126  Sum_probs=46.7

Q ss_pred             ecCCHHHHHHH--HHHHHhcCCCC--CcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH--
Q 041970          226 VDIDPQVIKSA--HQNAALNNIGP--KKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN--  299 (327)
Q Consensus       226 VDIDp~AV~~A--~eNa~lNgv~~--~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~--  299 (327)
                      +|||+.+++.|  +.|+..|++..  +...+.  .++.+         ..          .....++||+||+|++..  
T Consensus       354 vEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~--~dD~L---------~~----------~~~~~~kFDVVIgNPPYg~~  412 (878)
T 3s1s_A          354 NDIETLFLELLSIRLGLLFPQLVSSNNAPTIT--GEDVC---------SL----------NPEDFANVSVVVMNPPYVSG  412 (878)
T ss_dssp             ECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEE--CCCGG---------GC----------CGGGGTTEEEEEECCBCCSS
T ss_pred             EECCHHHHHHHHHHHHHHHhhhhcCCCcceEE--ecchh---------cc----------cccccCCCCEEEECCCcccc
Confidence            89999999999  88988765531  111222  23321         00          001146899999998741  


Q ss_pred             ------------------------------HHHHHHHHHhhccCCCcEEEE
Q 041970          300 ------------------------------PLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       300 ------------------------------vL~~L~p~i~~~LkpGG~LIl  320 (327)
                                                    ....++..+.++|+|||++.+
T Consensus       413 ~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAf  463 (878)
T 3s1s_A          413 VTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISA  463 (878)
T ss_dssp             CCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEE
T ss_pred             ccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEE
Confidence                                          122356678889999998754

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.31  E-value=4e-05  Score=70.94  Aligned_cols=37  Identities=8%  Similarity=0.155  Sum_probs=27.1

Q ss_pred             CCCeeEEEEcCC---h----HHH--HHHHHHHhhccCCCc--EEEEee
Q 041970          286 TEEYDVVIANIL---L----NPL--LQLADHIVSYAKPGA--VVGISG  322 (327)
Q Consensus       286 ~~~fDlVvANIl---a----~vL--~~L~p~i~~~LkpGG--~LIlSG  322 (327)
                      .++||+|++|..   .    +..  ..+++.+.++|||||  .|++.-
T Consensus       138 ~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          138 VERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            568999999864   1    111  136788889999999  998854

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.31  E-value=0.00016  Score=71.41  Aligned_cols=63  Identities=16%  Similarity=0.156  Sum_probs=46.4

Q ss_pred             hhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhc--CCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          213 LIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALN--NIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       213 ~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lN--gv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      .+.+|++|||+||                  +|+|+.+++.|++|++.|  |+  +++++.  .+|..         +.+
T Consensus        90 ~l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl--~~i~~i--~~Da~---------~~L  156 (410)
T 3ll7_A           90 FIREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG--KDVNIL--TGDFK---------EYL  156 (410)
T ss_dssp             GSCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT--CEEEEE--ESCGG---------GSH
T ss_pred             hcCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC--CcEEEE--ECcHH---------Hhh
Confidence            3445899999999                  999999999999999998  87  357764  46652         111


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCC
Q 041970          273 EYLSSHKIRGISETEEYDVVIANIL  297 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIl  297 (327)
                      .        .. ..++||+|++|+.
T Consensus       157 ~--------~~-~~~~fDvV~lDPP  172 (410)
T 3ll7_A          157 P--------LI-KTFHPDYIYVDPA  172 (410)
T ss_dssp             H--------HH-HHHCCSEEEECCE
T ss_pred             h--------hc-cCCCceEEEECCC
Confidence            0        00 1247999999975

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.25  E-value=0.00021  Score=68.32  Aligned_cols=96  Identities=17%  Similarity=0.227  Sum_probs=62.9

Q ss_pred             cCCCchhhHHHHHHHH-Hhh--hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEE
Q 041970          195 FGTGEHATTKLCLLLL-RSL--IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMK  251 (327)
Q Consensus       195 FGTG~H~TT~lcLe~L-e~~--~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~  251 (327)
                      |..+.+..++.....+ +.+  ..++.+|||+||                    +|+ |.+++.|+++        .+++
T Consensus       185 f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~v~  255 (372)
T 1fp1_D          185 FNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL--------SGIE  255 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEE
T ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc--------CCCE
Confidence            4444445554444433 443  345689999999                    698 8888877642        2356


Q ss_pred             EEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          252 LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       252 v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      +.  .+|..                    ..+  . .||+|+++-..+     ....++..+.+.|||||+|++..+.
T Consensus       256 ~~--~~d~~--------------------~~~--~-~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~  308 (372)
T 1fp1_D          256 HV--GGDMF--------------------ASV--P-QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI  308 (372)
T ss_dssp             EE--ECCTT--------------------TCC--C-CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EE--eCCcc--------------------cCC--C-CCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            54  45542                    011  2 399999975432     2347889999999999999987643

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.24  E-value=0.00023  Score=67.42  Aligned_cols=96  Identities=23%  Similarity=0.324  Sum_probs=62.9

Q ss_pred             cCCCchhhHHHHHHHHHhh---hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEE
Q 041970          195 FGTGEHATTKLCLLLLRSL---IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMK  251 (327)
Q Consensus       195 FGTG~H~TT~lcLe~Le~~---~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~  251 (327)
                      |..+.+..++.....++.+   ..++.+|||+||                    +|+ |.+++.|+++      .  +++
T Consensus       164 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~  234 (352)
T 1fp2_A          164 FNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------N--NLT  234 (352)
T ss_dssp             HHHHHHHTHHHHHHHHHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------T--TEE
T ss_pred             HHHHHHhcchhhhhHHHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------C--CcE
Confidence            4444444444443334444   456789999999                    899 9998887652      1  255


Q ss_pred             EEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCC---CcEEEEeec
Q 041970          252 LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKP---GAVVGISGI  323 (327)
Q Consensus       252 v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~Lkp---GG~LIlSGI  323 (327)
                      +.  .+|.+                    ..+  . .||+|+++-..+     ....++..+.+.|||   ||++++...
T Consensus       235 ~~--~~d~~--------------------~~~--p-~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  289 (352)
T 1fp2_A          235 YV--GGDMF--------------------TSI--P-NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  289 (352)
T ss_dssp             EE--ECCTT--------------------TCC--C-CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             EE--ecccc--------------------CCC--C-CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            53  45542                    011  2 399999875432     344788999999999   999988765


Q ss_pred             c
Q 041970          324 L  324 (327)
Q Consensus       324 l  324 (327)
                      .
T Consensus       290 ~  290 (352)
T 1fp2_A          290 V  290 (352)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.22  E-value=0.00036  Score=66.85  Aligned_cols=96  Identities=18%  Similarity=0.282  Sum_probs=60.6

Q ss_pred             cCCCchhhHHHHHHHHHh-h--hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEE
Q 041970          195 FGTGEHATTKLCLLLLRS-L--IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMK  251 (327)
Q Consensus       195 FGTG~H~TT~lcLe~Le~-~--~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~  251 (327)
                      |..+.+..++...+.+.+ +  ..++.+||||||                    +|+ |.+++.|+++        .+++
T Consensus       179 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~  249 (368)
T 3reo_A          179 FNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF--------SGVE  249 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEE
T ss_pred             HHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc--------CCCE
Confidence            333334444444443333 3  235679999999                    888 8888776642        3566


Q ss_pred             EEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          252 LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       252 v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      +.  .+|.+        +            .+ +.  .|+|+++-..     .....++..+.+.|||||+|++..+.
T Consensus       250 ~~--~~d~~--------~------------~~-p~--~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          250 HL--GGDMF--------D------------GV-PK--GDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             EE--ECCTT--------T------------CC-CC--CSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             EE--ecCCC--------C------------CC-CC--CCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            64  46652        0            12 12  2999886433     23457889999999999999887654

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.22  E-value=0.00041  Score=66.42  Aligned_cols=96  Identities=18%  Similarity=0.212  Sum_probs=61.5

Q ss_pred             cCCCchhhHHHHHHHH-Hhh--hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEE
Q 041970          195 FGTGEHATTKLCLLLL-RSL--IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMK  251 (327)
Q Consensus       195 FGTG~H~TT~lcLe~L-e~~--~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~  251 (327)
                      |..+.+..++.....+ +.+  ..++.+||||||                    +|+ |.+++.|+++        .+++
T Consensus       177 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~  247 (364)
T 3p9c_A          177 FNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF--------PGVT  247 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEE
T ss_pred             HHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc--------CCeE
Confidence            4444444444444433 333  245689999999                    898 8888776542        3566


Q ss_pred             EEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcC-Ch----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          252 LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANI-LL----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       252 v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANI-la----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      +.  .+|.+                    ..++ .  .|+|++.- +.    +....++..+++.|||||+|++..++
T Consensus       248 ~~--~~D~~--------------------~~~p-~--~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  300 (364)
T 3p9c_A          248 HV--GGDMF--------------------KEVP-S--GDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI  300 (364)
T ss_dssp             EE--ECCTT--------------------TCCC-C--CSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             EE--eCCcC--------------------CCCC-C--CCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            64  46652                    0121 2  29998753 32    34567899999999999999887654

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.20  E-value=0.00011  Score=67.61  Aligned_cols=72  Identities=14%  Similarity=0.145  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee------------------ecCCH-------HHHHHHHHHHHhcCCCCCcEEEEecCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT------------------VDIDP-------QVIKSAHQNAALNNIGPKKMKLHLVPD  257 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp-------~AV~~A~eNa~lNgv~~~~v~v~~~~~  257 (327)
                      +.+..+++  ...+|.+|||+||                  +|+++       .+++.|++|++.|++. +++++.  .+
T Consensus        72 ~~~l~~a~--~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~-~ri~~~--~~  146 (258)
T 2r6z_A           72 GELIAKAV--NHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTA-ARINLH--FG  146 (258)
T ss_dssp             -CHHHHHT--TGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH-TTEEEE--ES
T ss_pred             hHHHHHHh--CcCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc-cCeEEE--EC
Confidence            44555554  2346789999999                  99999       9999999999999986 467775  35


Q ss_pred             CCCCCCccccccchhhhcccccccCCCCC--CCeeEEEEcCC
Q 041970          258 RTFPSSMNERVDGIVEYLSSHKIRGISET--EEYDVVIANIL  297 (327)
Q Consensus       258 d~~~~~~~g~~~~l~~~~~~~~~~~~~~~--~~fDlVvANIl  297 (327)
                      |..         +++.        .+ ..  ++||+|++|+.
T Consensus       147 d~~---------~~l~--------~~-~~~~~~fD~V~~dP~  170 (258)
T 2r6z_A          147 NAA---------EQMP--------AL-VKTQGKPDIVYLDPM  170 (258)
T ss_dssp             CHH---------HHHH--------HH-HHHHCCCSEEEECCC
T ss_pred             CHH---------HHHH--------hh-hccCCCccEEEECCC
Confidence            531         1110        01 12  57999999974

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.10  E-value=0.0018  Score=62.78  Aligned_cols=98  Identities=21%  Similarity=0.218  Sum_probs=70.0

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCC----CcEEEEecC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGP----KKMKLHLVP  256 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~----~~v~v~~~~  256 (327)
                      +...+...+|.  .++|++|||+++                    +|+++.-++..++|+++.++..    ..+.+.  .
T Consensus       135 ~aS~l~~~~L~--~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~--~  210 (359)
T 4fzv_A          135 AASLLPVLALG--LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVT--S  210 (359)
T ss_dssp             GGGHHHHHHHC--CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEE--C
T ss_pred             HHHHHHHHHhC--CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEE--e
Confidence            55677777775  678999999998                    8999999999999999887642    234443  3


Q ss_pred             CCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC---------------------------hHHHHHHHHHHh
Q 041970          257 DRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL---------------------------LNPLLQLADHIV  309 (327)
Q Consensus       257 ~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl---------------------------a~vL~~L~p~i~  309 (327)
                      .|..         .+.         .. ..++||.|+....                           +..-.+|+....
T Consensus       211 ~D~~---------~~~---------~~-~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~  271 (359)
T 4fzv_A          211 WDGR---------KWG---------EL-EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGL  271 (359)
T ss_dssp             CCGG---------GHH---------HH-STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHH
T ss_pred             Cchh---------hcc---------hh-ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHH
Confidence            3321         110         01 2568999998753                           112246778889


Q ss_pred             hccCCCcEEEEe
Q 041970          310 SYAKPGAVVGIS  321 (327)
Q Consensus       310 ~~LkpGG~LIlS  321 (327)
                      ++|||||+|+.|
T Consensus       272 ~~lkpGG~LVYs  283 (359)
T 4fzv_A          272 LATKPGGHVVYS  283 (359)
T ss_dssp             HTEEEEEEEEEE
T ss_pred             hcCCCCcEEEEE
Confidence            999999999987

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=96.95  E-value=0.00087  Score=69.61  Aligned_cols=69  Identities=16%  Similarity=0.243  Sum_probs=50.9

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NP  300 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~v  300 (327)
                      |+.+|.|. .|+++.+.|+.+ ++|+|.  +++.                     +.+...+++|+||+=++-     +-
T Consensus       391 VEknp~A~-~a~~~v~~N~~~-dkVtVI--~gd~---------------------eev~LPEKVDIIVSEwMG~fLl~E~  445 (637)
T 4gqb_A          391 VEKNPNAV-VTLENWQFEEWG-SQVTVV--SSDM---------------------REWVAPEKADIIVSELLGSFADNEL  445 (637)
T ss_dssp             EESCHHHH-HHHHHHHHHTTG-GGEEEE--ESCT---------------------TTCCCSSCEEEEECCCCBTTBGGGC
T ss_pred             EECCHHHH-HHHHHHHhccCC-CeEEEE--eCcc---------------------eeccCCcccCEEEEEcCcccccccC
Confidence            89999875 688999999997 788875  5664                     122336799999998753     22


Q ss_pred             HHHHHHHHhhccCCCcEEE
Q 041970          301 LLQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       301 L~~L~p~i~~~LkpGG~LI  319 (327)
                      ....+....++|||||.+|
T Consensus       446 mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          446 SPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             HHHHHHHHGGGEEEEEEEE
T ss_pred             CHHHHHHHHHhcCCCcEEc
Confidence            2345566789999999875

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=96.92  E-value=0.00092  Score=63.13  Aligned_cols=64  Identities=16%  Similarity=0.226  Sum_probs=43.4

Q ss_pred             hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      +++|.+|||+||                    +|+|+.|++.|++|++.|+   +++++.  .+|..         ++..
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g---~~v~~v--~~d~~---------~l~~   89 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLF--KVSYR---------EADF   89 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEE--ECCGG---------GHHH
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEE--ECCHH---------HHHH
Confidence            346778888888                    9999999999999999987   357764  45541         1110


Q ss_pred             hcccccccCCCCCCCeeEEEEcCC
Q 041970          274 YLSSHKIRGISETEEYDVVIANIL  297 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIl  297 (327)
                      ..     ... ...+||.|++|+.
T Consensus        90 ~l-----~~~-g~~~~D~Vl~D~g  107 (301)
T 1m6y_A           90 LL-----KTL-GIEKVDGILMDLG  107 (301)
T ss_dssp             HH-----HHT-TCSCEEEEEEECS
T ss_pred             HH-----Hhc-CCCCCCEEEEcCc
Confidence            00     000 1257999999984

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=96.84  E-value=0.0053  Score=55.45  Aligned_cols=49  Identities=10%  Similarity=0.205  Sum_probs=34.9

Q ss_pred             HHHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          205 LCLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       205 lcLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      ..++.+-+.+  .++++|||+||                  +|+|+.+++.|++|++.+    +++++.  .+|.
T Consensus        17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~----~~v~~~--~~D~   85 (244)
T 1qam_A           17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH----DNFQVL--NKDI   85 (244)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC----CSEEEE--CCCG
T ss_pred             HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccC----CCeEEE--EChH
Confidence            3444444433  46789999999                  999999999999998642    346664  5665

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=96.80  E-value=0.0044  Score=62.74  Aligned_cols=53  Identities=13%  Similarity=0.261  Sum_probs=36.4

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL  298 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla  298 (327)
                      +|+|+.+++.|+-|+.++|++..++.    .+|.+..       ..         .......+||+||+|++.
T Consensus       260 ~E~~~~~~~la~mNl~lhg~~~~~I~----~~dtL~~-------~~---------~~~~~~~~fD~Il~NPPf  312 (530)
T 3ufb_A          260 GEAKSLPYLLVQMNLLLHGLEYPRID----PENSLRF-------PL---------REMGDKDRVDVILTNPPF  312 (530)
T ss_dssp             ECCSHHHHHHHHHHHHHHTCSCCEEE----CSCTTCS-------CG---------GGCCGGGCBSEEEECCCS
T ss_pred             hhccHHHHHHHHHHHHhcCCcccccc----ccccccC-------ch---------hhhcccccceEEEecCCC
Confidence            89999999999999999998744443    4564310       00         001124579999999974

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=96.77  E-value=0.00092  Score=63.32  Aligned_cols=83  Identities=23%  Similarity=0.288  Sum_probs=56.4

Q ss_pred             HHHHhh---hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970          208 LLLRSL---IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSM  264 (327)
Q Consensus       208 e~Le~~---~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~  264 (327)
                      .+++.+   ..++.+||||||                    +|+ |.+++.|++      ..  ++++.  .+|.+    
T Consensus       182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~--~v~~~--~~d~~----  246 (358)
T 1zg3_A          182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NE--NLNFV--GGDMF----  246 (358)
T ss_dssp             HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CS--SEEEE--ECCTT----
T ss_pred             HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CC--CcEEE--eCccC----
Confidence            455554   356789999999                    698 788876654      12  35553  45542    


Q ss_pred             cccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCC---CcEEEEeecc
Q 041970          265 NERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKP---GAVVGISGIL  324 (327)
Q Consensus       265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~Lkp---GG~LIlSGIl  324 (327)
                                      ..+   ..||+|+++-..+     ....++..+.+.|+|   ||++++....
T Consensus       247 ----------------~~~---~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  295 (358)
T 1zg3_A          247 ----------------KSI---PSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDIS  295 (358)
T ss_dssp             ----------------TCC---CCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred             ----------------CCC---CCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence                            011   2499999875432     245788999999999   9999886543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=96.76  E-value=9.5e-05  Score=66.69  Aligned_cols=79  Identities=13%  Similarity=0.298  Sum_probs=53.0

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .++++|||+||                  +|+|+.+++.|++|++.    .+++++  ..+|..         ++     
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~----~~~v~~--~~~D~~---------~~-----   87 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL----NTRVTL--IHQDIL---------QF-----   87 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT----CSEEEE--CCSCCT---------TT-----
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc----CCceEE--EECChh---------hc-----
Confidence            56789999999                  99999999999998762    135665  356652         10     


Q ss_pred             cccccCCCCCCCeeEEEEcCCh----HHHHHHH--------------HHHhhccCCCcEEE
Q 041970          277 SHKIRGISETEEYDVVIANILL----NPLLQLA--------------DHIVSYAKPGAVVG  319 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla----~vL~~L~--------------p~i~~~LkpGG~LI  319 (327)
                           .+...++| .|++|+..    ..+..++              ..+.+.|+|||.|.
T Consensus        88 -----~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~  142 (245)
T 1yub_A           88 -----QFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLG  142 (245)
T ss_dssp             -----TCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHH
T ss_pred             -----CcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchh
Confidence                 11112578 89999753    3344443              44778888988754

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=96.43  E-value=0.0044  Score=65.11  Aligned_cols=75  Identities=12%  Similarity=0.185  Sum_probs=49.3

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NP  300 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~v  300 (327)
                      ||.+|.|+...+...+ |+.+ ++|++.  .++.         .++.-+.      .....+++|+||+=.+.     +.
T Consensus       452 VEknp~A~~~l~~~~~-Ng~~-d~VtVI--~gd~---------eev~lp~------~~~~~ekVDIIVSElmGsfl~nEL  512 (745)
T 3ua3_A          452 VEKNPNAIVTLKYMNV-RTWK-RRVTII--ESDM---------RSLPGIA------KDRGFEQPDIIVSELLGSFGDNEL  512 (745)
T ss_dssp             EECCHHHHHHHHHHHH-HTTT-TCSEEE--ESCG---------GGHHHHH------HHTTCCCCSEEEECCCBTTBGGGS
T ss_pred             EeCChHHHHHHHHHHh-cCCC-CeEEEE--eCch---------hhccccc------ccCCCCcccEEEEeccccccchhc
Confidence            7888988876665443 9997 678874  4554         2221000      00014789999998874     23


Q ss_pred             HHHHHHHHhhccCCCcEEE
Q 041970          301 LLQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       301 L~~L~p~i~~~LkpGG~LI  319 (327)
                      ..+++..+.++|||||.+|
T Consensus       513 ~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          513 SPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHHHHTTGGGSCTTCEEE
T ss_pred             cHHHHHHHHHhCCCCcEEE
Confidence            4467777789999999875

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=96.33  E-value=0.014  Score=53.18  Aligned_cols=68  Identities=12%  Similarity=0.282  Sum_probs=44.1

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      .++++|||+||                   +|+|+.+++.+++|   ..   .++++.  .+|...       -++    
T Consensus        30 ~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~~---~~v~~i--~~D~~~-------~~~----   90 (249)
T 3ftd_A           30 EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---GD---ERLEVI--NEDASK-------FPF----   90 (249)
T ss_dssp             CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---CC---TTEEEE--CSCTTT-------CCG----
T ss_pred             CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---cC---CCeEEE--Ecchhh-------CCh----
Confidence            46789999999                   99999999999988   21   346654  577631       000    


Q ss_pred             ccccccCCCCCCCeeEEEEcCChHHHHHHHHHHh
Q 041970          276 SSHKIRGISETEEYDVVIANILLNPLLQLADHIV  309 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~  309 (327)
                           ...  ..+| .|++|+...+-..++-.+.
T Consensus        91 -----~~~--~~~~-~vv~NlPy~i~~~il~~ll  116 (249)
T 3ftd_A           91 -----CSL--GKEL-KVVGNLPYNVASLIIENTV  116 (249)
T ss_dssp             -----GGS--CSSE-EEEEECCTTTHHHHHHHHH
T ss_pred             -----hHc--cCCc-EEEEECchhccHHHHHHHH
Confidence                 011  1244 8999998765554444433

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=96.16  E-value=0.0054  Score=56.96  Aligned_cols=60  Identities=12%  Similarity=0.102  Sum_probs=41.6

Q ss_pred             hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          214 IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       214 ~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      +.+| +|||+||                  +|+|+.+++.+++|+..     .++++.  .+|.+         ++    
T Consensus        45 ~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~-----~~v~vi--~~D~l---------~~----  103 (271)
T 3fut_A           45 PFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG-----LPVRLV--FQDAL---------LY----  103 (271)
T ss_dssp             CCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT-----SSEEEE--ESCGG---------GS----
T ss_pred             CCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC-----CCEEEE--ECChh---------hC----
Confidence            3567 9999999                  99999999999999752     346664  56753         10    


Q ss_pred             ccccccCCCCCCCeeEEEEcCChHH
Q 041970          276 SSHKIRGISETEEYDVVIANILLNP  300 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~v  300 (327)
                            .+.....+|.|++|+...+
T Consensus       104 ------~~~~~~~~~~iv~NlPy~i  122 (271)
T 3fut_A          104 ------PWEEVPQGSLLVANLPYHI  122 (271)
T ss_dssp             ------CGGGSCTTEEEEEEECSSC
T ss_pred             ------ChhhccCccEEEecCcccc
Confidence                  0111136899999986543

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=95.87  E-value=0.02  Score=54.07  Aligned_cols=114  Identities=17%  Similarity=0.197  Sum_probs=68.7

Q ss_pred             eEEEccCcccCCCc-hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHH-hc
Q 041970          186 NIILNPGLAFGTGE-HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAA-LN  243 (327)
Q Consensus       186 ~I~idPG~AFGTG~-H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~-lN  243 (327)
                      .+.||--+=+-.-. +.-+.|+.-.--..-...++||=+|-                    |||||..|+.|++-.. .|
T Consensus        52 ~L~LDg~~q~te~De~~YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~  131 (294)
T 3o4f_A           52 VMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHN  131 (294)
T ss_dssp             EEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHH
T ss_pred             EEEECCchhhccccHHHHHHHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcccc
Confidence            35555443332222 34444443322222233467777776                    9999999999999753 33


Q ss_pred             C--CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHH--HHHHHHHhhccCC
Q 041970          244 N--IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPL--LQLADHIVSYAKP  314 (327)
Q Consensus       244 g--v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL--~~L~p~i~~~Lkp  314 (327)
                      +  .+..|++++.  +|..         +.++          ...++||+|+....-     ..|  .+....+.++|+|
T Consensus       132 ~~~~~dpRv~v~~--~Dg~---------~~l~----------~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p  190 (294)
T 3o4f_A          132 AGSYDDPRFKLVI--DDGV---------NFVN----------QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNP  190 (294)
T ss_dssp             TTGGGCTTEEEEE--SCTT---------TTTS----------CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEE
T ss_pred             ccccCCCcEEEEe--chHH---------HHHh----------hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCC
Confidence            3  3346788764  5542         1110          125689999988642     111  3567789999999


Q ss_pred             CcEEEE
Q 041970          315 GAVVGI  320 (327)
Q Consensus       315 GG~LIl  320 (327)
                      ||.++.
T Consensus       191 ~Gv~v~  196 (294)
T 3o4f_A          191 GGIFVA  196 (294)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
Confidence            999886

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.79  E-value=0.0079  Score=54.80  Aligned_cols=48  Identities=21%  Similarity=0.208  Sum_probs=38.1

Q ss_pred             Cchhh---HHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCC
Q 041970          198 GEHAT---TKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNI  245 (327)
Q Consensus       198 G~H~T---T~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv  245 (327)
                      +.|||   ..|+-++|+.+..+|+.|||..|                  +|+++.+++.|++|++.|++
T Consensus       191 ~~~~~~~p~~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          191 LTHITPKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             ----CCCCHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             cCCCCCCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            56999   68888888888889999999999                  99999999999999998875

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=95.68  E-value=0.0026  Score=58.79  Aligned_cols=61  Identities=18%  Similarity=0.282  Sum_probs=39.2

Q ss_pred             cCC--Ceeeeeee------------------ecCCHHHHHHHHHH-------HHhcC-CCCCcEEEEecCCCCCCCCccc
Q 041970          215 KGG--ELFLDYGT------------------VDIDPQVIKSAHQN-------AALNN-IGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       215 ~~g--~~VLDvGc------------------VDIDp~AV~~A~eN-------a~lNg-v~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      ++|  .+|||+||                  ||+++.+.+.+++|       ++.|+ +. +++++.  .+|..      
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~-~~i~~~--~~D~~------  155 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQ-ERLQLI--HASSL------  155 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHH-HHEEEE--ESCHH------
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhh-cCEEEE--ECCHH------
Confidence            567  89999999                  99999765555555       44455 43 457764  45531      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEEEcCC
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVIANIL  297 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl  297 (327)
                         +++        ...  ..+||+|+.|+.
T Consensus       156 ---~~L--------~~~--~~~fDvV~lDP~  173 (258)
T 2oyr_A          156 ---TAL--------TDI--TPRPQVVYLDPM  173 (258)
T ss_dssp             ---HHS--------TTC--SSCCSEEEECCC
T ss_pred             ---HHH--------HhC--cccCCEEEEcCC
Confidence               111        111  237999999984

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.67  E-value=0.0072  Score=56.18  Aligned_cols=48  Identities=25%  Similarity=0.304  Sum_probs=36.7

Q ss_pred             CCCchhhH---HHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhc
Q 041970          196 GTGEHATT---KLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       196 GTG~H~TT---~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      +.+.|||+   .++-++++.+..+|+.|||.||                  +|+++.+++.|++|++..
T Consensus       212 ~~~~h~~~~p~~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          212 STKDHPAPFPLELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             ------CCSCHHHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            45679986   6777777776678999999999                  999999999999998765

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=95.65  E-value=0.047  Score=50.72  Aligned_cols=70  Identities=24%  Similarity=0.373  Sum_probs=43.5

Q ss_pred             cCCCeeeeeee----------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          215 KGGELFLDYGT----------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       215 ~~g~~VLDvGc----------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      .++++|||+||                      +|+|+.+++.|++|+     . .++++.  .+|..         ++ 
T Consensus        41 ~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~-~~v~~i--~~D~~---------~~-  102 (279)
T 3uzu_A           41 ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----G-ELLELH--AGDAL---------TF-  102 (279)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----G-GGEEEE--ESCGG---------GC-
T ss_pred             CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----C-CCcEEE--ECChh---------cC-
Confidence            45677888888                      799999999999994     1 346664  46753         00 


Q ss_pred             hhcccccccCCCC--CCCeeEEEEcCChHHHHHHHHHH
Q 041970          273 EYLSSHKIRGISE--TEEYDVVIANILLNPLLQLADHI  308 (327)
Q Consensus       273 ~~~~~~~~~~~~~--~~~fDlVvANIla~vL~~L~p~i  308 (327)
                            +......  ....+.||+|+...+-..++-.+
T Consensus       103 ------~~~~~~~~~~~~~~~vv~NlPY~iss~il~~l  134 (279)
T 3uzu_A          103 ------DFGSIARPGDEPSLRIIGNLPYNISSPLLFHL  134 (279)
T ss_dssp             ------CGGGGSCSSSSCCEEEEEECCHHHHHHHHHHH
T ss_pred             ------ChhHhcccccCCceEEEEccCccccHHHHHHH
Confidence                  0001100  01346899999877655554443

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=95.52  E-value=0.05  Score=50.90  Aligned_cols=72  Identities=8%  Similarity=0.043  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-HHHHHHHHHHhh
Q 041970          232 VIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-NPLLQLADHIVS  310 (327)
Q Consensus       232 AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-~vL~~L~p~i~~  310 (327)
                      .++.+++|++..|+..+++++.  .|+..         +.+        ... ..++||+|...--. ......+..+..
T Consensus       173 ~~~~ar~n~~~~gl~~~~I~li--~Gda~---------etL--------~~~-~~~~~d~vfIDaD~y~~~~~~Le~~~p  232 (282)
T 2wk1_A          173 SEEEVRRNFRNYDLLDEQVRFL--PGWFK---------DTL--------PTA-PIDTLAVLRMDGDLYESTWDTLTNLYP  232 (282)
T ss_dssp             CHHHHHHHHHHTTCCSTTEEEE--ESCHH---------HHS--------TTC-CCCCEEEEEECCCSHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHcCCCcCceEEE--EeCHH---------HHH--------hhC-CCCCEEEEEEcCCccccHHHHHHHHHh
Confidence            4788999999999854678875  46642         211        112 24689999976533 455677888999


Q ss_pred             ccCCCcEEEEeec
Q 041970          311 YAKPGAVVGISGI  323 (327)
Q Consensus       311 ~LkpGG~LIlSGI  323 (327)
                      +|+|||++++-.+
T Consensus       233 ~L~pGGiIv~DD~  245 (282)
T 2wk1_A          233 KVSVGGYVIVDDY  245 (282)
T ss_dssp             GEEEEEEEEESSC
T ss_pred             hcCCCEEEEEcCC
Confidence            9999999988654

>3cjs_A L11 mtase, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus}

Probab=95.35  E-value=0.029  Score=40.52  Aligned_cols=56  Identities=20%  Similarity=0.103  Sum_probs=40.7

Q ss_pred             EEEEeCCchHHHHHHHHHhcCCceEEEEcCCCCCCCCCCcEEEEEEcCCCCCHHHHHHhhhhhcCCCCCCcceeeeccch
Q 041970           76 VRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQC  155 (327)
Q Consensus        76 i~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~~~~~~~~~~v~ayfp~~~~~~~~l~~~~~~~~l~~~~~~~~~~~ee~  155 (327)
                      .++..+.+..|+....|.+.||.|+...+.           .|.+|||+..++.              . .=+++..+|+
T Consensus         4 ~~l~gt~e~~ea~~~~L~e~GA~Gleer~g-----------ev~ayF~~~~dlp--------------~-~gew~e~pD~   57 (59)
T 3cjs_A            4 YRLKGTLEALDPILPGLFDGGARGLWEREG-----------EVWAFFPAPVDLP--------------Y-EGVWEEVGDE   57 (59)
T ss_dssp             EEEESCTTTTGGGHHHHHHTTCCEEEEETT-----------EEEEEESSCCCCS--------------S-CCEEEECCCC
T ss_pred             EEecCChHHhhhhhHHHHHhcCCcceecCC-----------eEEEEcCCcccCC--------------C-CceecccCCC
Confidence            467788888899999999999999975431           3889999875432              1 1156667788


Q ss_pred             hh
Q 041970          156 NW  157 (327)
Q Consensus       156 DW  157 (327)
                      ||
T Consensus        58 DW   59 (59)
T 3cjs_A           58 DW   59 (59)
T ss_dssp             -C
T ss_pred             CC
Confidence            98

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=95.30  E-value=0.023  Score=51.96  Aligned_cols=28  Identities=11%  Similarity=0.292  Sum_probs=21.2

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      +|+|+.+++.+++|++.+    .++++.  .+|.
T Consensus        49 vEid~~~~~~a~~~~~~~----~~v~~i--~~D~   76 (252)
T 1qyr_A           49 IELDRDLAARLQTHPFLG----PKLTIY--QQDA   76 (252)
T ss_dssp             ECCCHHHHHHHHTCTTTG----GGEEEE--CSCG
T ss_pred             EECCHHHHHHHHHHhccC----CceEEE--ECch
Confidence            899999999999987543    246654  5775

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=94.24  E-value=0.057  Score=52.75  Aligned_cols=87  Identities=18%  Similarity=0.191  Sum_probs=55.0

Q ss_pred             CCCeeeeeee-------------------ecCCHHHHHHHHHHHHh-cC--CC---CCcEEEEecCCCCCCCCccccccc
Q 041970          216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAAL-NN--IG---PKKMKLHLVPDRTFPSSMNERVDG  270 (327)
Q Consensus       216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~l-Ng--v~---~~~v~v~~~~~d~~~~~~~g~~~~  270 (327)
                      +.++||=+|-                   |||||..|+.|++.... ++  .+   .+++++..  +|..         +
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii--~Da~---------~  273 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLI--EDCI---------P  273 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEE--SCHH---------H
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeeh--HHHH---------H
Confidence            4578888887                   99999999999986421 11  11   13566653  4531         1


Q ss_pred             hhhhcccccccCCCCCCCeeEEEEcCCh-----------H--HHHHHHHHHhhccCCCcEEEE
Q 041970          271 IVEYLSSHKIRGISETEEYDVVIANILL-----------N--PLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       271 l~~~~~~~~~~~~~~~~~fDlVvANIla-----------~--vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      .++.       .....++||+|+.....           .  .-.+....+.++|+|||.++.
T Consensus       274 fl~~-------~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~  329 (381)
T 3c6k_A          274 VLKR-------YAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFT  329 (381)
T ss_dssp             HHHH-------HHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             HHHh-------hhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence            1110       00114689999988532           1  124567788999999999986

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=92.50  E-value=0.63  Score=44.66  Aligned_cols=68  Identities=15%  Similarity=0.060  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--HHHHHHHH
Q 041970          229 DPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--NPLLQLAD  306 (327)
Q Consensus       229 Dp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~vL~~L~p  306 (327)
                      +-.+-..++.|++.|+++.+.+.+.-   ..                     +.  ..+.||+|+--+..  ..+...+.
T Consensus        67 s~~~~~~~~~n~~~~~~~~~~~~~~~---~~---------------------~~--~~~~~~~v~~~lpk~~~~l~~~L~  120 (375)
T 4dcm_A           67 SYISELATRENLRLNGIDESSVKFLD---ST---------------------AD--YPQQPGVVLIKVPKTLALLEQQLR  120 (375)
T ss_dssp             CHHHHHHHHHHHHHTTCCGGGSEEEE---TT---------------------SC--CCSSCSEEEEECCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCccceEecc---cc---------------------cc--cccCCCEEEEEcCCCHHHHHHHHH
Confidence            77788888999999999865566531   10                     01  15679999988764  45666778


Q ss_pred             HHhhccCCCcEEEEee
Q 041970          307 HIVSYAKPGAVVGISG  322 (327)
Q Consensus       307 ~i~~~LkpGG~LIlSG  322 (327)
                      .+...|+||+.++..|
T Consensus       121 ~l~~~l~~~~~i~~~g  136 (375)
T 4dcm_A          121 ALRKVVTSDTRIIAGA  136 (375)
T ss_dssp             HHHTTCCTTSEEEEEE
T ss_pred             HHHhhCCCCCEEEEEe
Confidence            8999999999998776

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=91.58  E-value=0.11  Score=50.31  Aligned_cols=21  Identities=10%  Similarity=0.099  Sum_probs=17.2

Q ss_pred             HHHHHHhhccCCCcEEEEeec
Q 041970          303 QLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       303 ~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      .++...++.|+|||+++++-.
T Consensus       206 ~fL~~ra~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          206 EFLRARAAEVKRGGAMFLVCL  226 (374)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhCCCCEEEEEEe
Confidence            356677999999999998754

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=91.38  E-value=0.38  Score=43.99  Aligned_cols=34  Identities=15%  Similarity=0.210  Sum_probs=26.8

Q ss_pred             CCeeEEEEcCChH------HHHHHHHHHhhccCCCcEEEE
Q 041970          287 EEYDVVIANILLN------PLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       287 ~~fDlVvANIla~------vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      .+||+|+-...+.      .-..++..++++|+|||+|+.
T Consensus       172 ~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          172 QKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             TCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             CeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence            3799999886431      135688899999999999986

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=89.63  E-value=0.34  Score=45.47  Aligned_cols=74  Identities=18%  Similarity=0.303  Sum_probs=42.1

Q ss_pred             EEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          187 IILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       187 I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      +++|-+  ||.|.|  |+..++.       +.+|+  | +|.||.|++.|++ ++.     +++.+.  +++..      
T Consensus        25 ~~VD~T--~G~GGH--S~~il~~-------~g~Vi--g-iD~Dp~Ai~~A~~-L~~-----~rv~lv--~~~f~------   76 (285)
T 1wg8_A           25 VYVDAT--LGGAGH--ARGILER-------GGRVI--G-LDQDPEAVARAKG-LHL-----PGLTVV--QGNFR------   76 (285)
T ss_dssp             EEEETT--CTTSHH--HHHHHHT-------TCEEE--E-EESCHHHHHHHHH-TCC-----TTEEEE--ESCGG------
T ss_pred             EEEEeC--CCCcHH--HHHHHHC-------CCEEE--E-EeCCHHHHHHHHh-hcc-----CCEEEE--ECCcc------
Confidence            556654  788888  3433332       22331  1 8999999999998 533     367664  45531      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEEEcCC
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVIANIL  297 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl  297 (327)
                      ..++.+.        .. ...++|.|++|+-
T Consensus        77 ~l~~~L~--------~~-g~~~vDgIL~DLG   98 (285)
T 1wg8_A           77 HLKRHLA--------AL-GVERVDGILADLG   98 (285)
T ss_dssp             GHHHHHH--------HT-TCSCEEEEEEECS
T ss_pred             hHHHHHH--------Hc-CCCCcCEEEeCCc
Confidence            1111111        11 1257999999974

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=89.49  E-value=0.26  Score=46.18  Aligned_cols=37  Identities=30%  Similarity=0.401  Sum_probs=31.2

Q ss_pred             CCeeEEEEcCC--------------hHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          287 EEYDVVIANIL--------------LNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       287 ~~fDlVvANIl--------------a~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      ++||+|+.|+-              |--+..|..+...+|+|||.+++.|.
T Consensus       210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aY  260 (324)
T 3trk_A          210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAY  260 (324)
T ss_dssp             CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEEC
T ss_pred             CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEee
Confidence            78999999995              23456788899999999999998863

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=89.38  E-value=0.23  Score=46.21  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=23.7

Q ss_pred             CCCeeEEEEcCCh-------H---HHHHHHHHHhhccCCCc-EEEE
Q 041970          286 TEEYDVVIANILL-------N---PLLQLADHIVSYAKPGA-VVGI  320 (327)
Q Consensus       286 ~~~fDlVvANIla-------~---vL~~L~p~i~~~LkpGG-~LIl  320 (327)
                      ..++|+|++.+-.       +   .+. .+.-+.++|+||| .|++
T Consensus       137 ~~~~DvVLSDMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~Fvv  181 (269)
T 2px2_A          137 SEISDTLLCDIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCI  181 (269)
T ss_dssp             CCCCSEEEECCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEE
T ss_pred             CCCCCEEEeCCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEEE
Confidence            4589999999842       1   222 3445568999999 7765

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=88.95  E-value=0.14  Score=48.12  Aligned_cols=36  Identities=14%  Similarity=0.158  Sum_probs=27.2

Q ss_pred             CCCeeEEEEcCChH-------H--HHHHHHHHhhccCCC--cEEEEe
Q 041970          286 TEEYDVVIANILLN-------P--LLQLADHIVSYAKPG--AVVGIS  321 (327)
Q Consensus       286 ~~~fDlVvANIla~-------v--L~~L~p~i~~~LkpG--G~LIlS  321 (327)
                      ..++|+|++.+..+       .  ...|+.-+...|+||  |.|++.
T Consensus       154 ~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K  200 (282)
T 3gcz_A          154 VIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK  200 (282)
T ss_dssp             CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence            57899999998643       1  224566678899999  999874

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=88.28  E-value=0.23  Score=41.70  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=28.1

Q ss_pred             CCeeEEEEcCCh--------HH------HHHHHHHHhhccCCCcEEEEeec
Q 041970          287 EEYDVVIANILL--------NP------LLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       287 ~~fDlVvANIla--------~v------L~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      ++||+|++|...        +.      ...++..+.+.|||||+|+++-.
T Consensus        96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence            579999997621        11      14678889999999999998743

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=87.78  E-value=0.43  Score=40.90  Aligned_cols=19  Identities=11%  Similarity=0.174  Sum_probs=13.0

Q ss_pred             HHHHHhhhcCCCeeeeeee
Q 041970          207 LLLLRSLIKGGELFLDYGT  225 (327)
Q Consensus       207 Le~Le~~~~~g~~VLDvGc  225 (327)
                      .++|.+...++.+||||||
T Consensus        26 aeYI~~~~~~~~rVlEVG~   44 (153)
T 2k4m_A           26 AVYIIRCSGPGTRVVEVGA   44 (153)
T ss_dssp             HHHHHHHSCSSSEEEEETC
T ss_pred             HHHHHhcCCCCCcEEEEcc
Confidence            3344444456679999999

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=85.48  E-value=1.7  Score=42.28  Aligned_cols=13  Identities=23%  Similarity=0.409  Sum_probs=11.5

Q ss_pred             hhcCCCeeeeeee
Q 041970          213 LIKGGELFLDYGT  225 (327)
Q Consensus       213 ~~~~g~~VLDvGc  225 (327)
                      .+++|++|||+||
T Consensus       208 ~l~~G~~vlDLGA  220 (375)
T 4auk_A          208 RLANGMWAVDLGA  220 (375)
T ss_dssp             HSCTTCEEEEETC
T ss_pred             cCCCCCEEEEeCc
Confidence            4678999999999

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=83.75  E-value=0.5  Score=44.32  Aligned_cols=51  Identities=24%  Similarity=0.354  Sum_probs=43.2

Q ss_pred             cCCCchhhH---HHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCC
Q 041970          195 FGTGEHATT---KLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNI  245 (327)
Q Consensus       195 FGTG~H~TT---~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv  245 (327)
                      +|.+.|||.   .++-++++....+|+.|||--|                  +|++|.+++.|+++++..+.
T Consensus       228 ~~~~~~~~~kp~~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~~  299 (323)
T 1boo_A          228 MGIKAHPARFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNI  299 (323)
T ss_dssp             TTCCCCSSCCCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             cCCCCCCCcCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhccc
Confidence            577789995   7887788777789999999888                  99999999999999866554

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=82.56  E-value=1.1  Score=45.89  Aligned_cols=41  Identities=22%  Similarity=0.365  Sum_probs=32.1

Q ss_pred             CCCCCCeeEEEEcCCh--------------HHHHHHHHHHhhccCCCcEEEEeec
Q 041970          283 ISETEEYDVVIANILL--------------NPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       283 ~~~~~~fDlVvANIla--------------~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      ++..++||+|+.|+-.              --+..|..+...+|+|||.+++.|.
T Consensus       216 ~p~~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~Y  270 (670)
T 4gua_A          216 FPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSY  270 (670)
T ss_dssp             CCCCCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             CCCCCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEe
Confidence            3345799999999953              2345677889999999999998763

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=81.07  E-value=3.8  Score=39.72  Aligned_cols=19  Identities=5%  Similarity=-0.251  Sum_probs=15.4

Q ss_pred             HHHHhhccCCCcEEEEeec
Q 041970          305 ADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       305 ~p~i~~~LkpGG~LIlSGI  323 (327)
                      +...++.|+|||+++++-.
T Consensus       208 L~~Ra~eL~pGG~mvl~~~  226 (384)
T 2efj_A          208 LRIHSEELISRGRMLLTFI  226 (384)
T ss_dssp             HHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHhccCCeEEEEEe
Confidence            4555899999999998854

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=80.14  E-value=1.2  Score=40.89  Aligned_cols=36  Identities=14%  Similarity=0.135  Sum_probs=28.0

Q ss_pred             CCCeeEEEEcCChH-----------------------HHHHHHHHHhhccCCCcEEEEe
Q 041970          286 TEEYDVVIANILLN-----------------------PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       286 ~~~fDlVvANIla~-----------------------vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      .++||+||+|+...                       .+..++..+.++|||||.+++.
T Consensus        38 ~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           38 EASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             TTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            57899999998631                       1345677889999999998775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	327
d2nxca1	254	c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT	8e-14

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

 Score = 68.0 bits (165), Expect = 8e-14
 Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 12/178 (6%)

Query: 153 EQCNWIKKAQESFHPVEVTKGLWIVPEWNVQ---ATNIILNPGLAFGTGEHATTKLCLLL 209
              +W++  +    P        ++  W+        +++ PG+AFGTG H TT+L L  
Sbjct: 55  GDEDWLEAWRRDLKPALAPP-FVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKA 113

Query: 210 LRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVD 269
           L   ++ G+  LD GT               A   +G K + + + P     +  N + +
Sbjct: 114 LARHLRPGDKVLDLGTGSG--------VLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN 165

Query: 270 GIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 327
           G+        +        +D+++AN+       LA        PG    ++GIL ++
Sbjct: 166 GVRPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDR 223

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	327
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	100.0
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.44
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.3
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.22
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.21
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.21
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.09
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.08
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.04
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.02
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.0
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.0
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.96
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.95
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.95
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.92
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.92
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.91
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.83
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.81
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.81
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.81
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.77
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.74
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.72
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.72
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.71
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.69
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.68
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.65
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.65
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.63
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.62
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.55
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.49
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.49
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.48
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.48
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.47
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.45
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.43
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.42
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.4
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.38
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.38
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.38
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.37
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.35
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.35
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.33
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.33
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.31
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.28
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.28
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.26
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.25
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.24
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.19
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.18
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.14
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.12
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.12
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.09
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.99
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.92
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.92
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.87
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.85
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	97.82
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.75
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.72
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.43
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.32
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.17
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	97.14
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.01
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.93
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	96.65
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.57
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	96.5
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.4
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	96.24
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	96.11
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.84
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	95.77
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	95.7
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	95.53
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	95.35
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	94.06
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	93.79
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	93.3
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	92.99
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	92.8
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	92.44
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	91.68
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	91.43
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	87.81
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	86.21
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	82.35
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	81.84
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	80.68

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.2e-47  Score=355.94  Aligned_cols=200  Identities=26%  Similarity=0.391  Sum_probs=166.3

Q ss_pred             EEEEEeCCchHHHHHHHHHhcCCceEEEEcCCCCCCCCCCcEEEEEEcCCCCCHHHHHHhhhhhcCCCCCCcceeeeccc
Q 041970           75 LVRICCQKHALDMFSEAPLCFGASSTSVDEHDNDADENSDEIYIDSIFPECKDVDECILNTANSIGLKEIPRYEVKMGEQ  154 (327)
Q Consensus        75 ei~i~~~~e~~d~v~~~L~e~Ga~gv~ied~~~~~~~~~~~~~v~ayfp~~~~~~~~l~~~~~~~~l~~~~~~~~~~~ee  154 (327)
                      -.++.++.++.|++.+.|.++|+.|+..++.           .+.+||+++.+.             .  ..+.++.+++
T Consensus         3 ~~~l~~~~e~~d~~~~~l~e~g~~g~~e~~~-----------~~~a~~~~~~~~-------------~--~~~~~~~i~~   56 (254)
T d2nxca1           3 VYRLKGTLEALDPILPGLFDGGARGLWEREG-----------EVWAFFPAPVDL-------------P--YEGVWEEVGD   56 (254)
T ss_dssp             EEEEESCHHHHGGGHHHHHHTTCCEEEEETT-----------EEEEEESSCCCC-------------S--SCCEEEECCH
T ss_pred             EEEecCCcchhhHHHHHHHhcCCceEEEEcC-----------eEEEEecCCCCC-------------c--cccEEEEcCc
Confidence            4678999999999999999999999875431           367999986432             1  1345677889


Q ss_pred             hhhHHHHhhcCceEEEcCcEEEEcCCC---CCceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee------
Q 041970          155 CNWIKKAQESFHPVEVTKGLWIVPEWN---VQATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT------  225 (327)
Q Consensus       155 ~DW~~~Wk~~f~P~~vg~~l~I~P~W~---~~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc------  225 (327)
                      +||+++||++|+|+++| +++|+|+|+   +++++|.||||||||||+||||+|||++|+++.++|++|||+||      
T Consensus        57 ~dW~~~w~~~~~p~~~~-~~~v~~~~~~~~~~~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~  135 (254)
T d2nxca1          57 EDWLEAWRRDLKPALAP-PFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLA  135 (254)
T ss_dssp             HHHHHHHHHHCCCEEET-TEEEECTTCCCCSSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHH
T ss_pred             chHHHHHHhhCCCEEEC-CEEEEeccccCCCcceEEEEccccccCccccchhhHHHHHHHhhcCccCEEEEcccchhHHH
Confidence            99999999999999997 688999998   34688999999999999999999999999999999999999999      


Q ss_pred             ------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEE
Q 041970          226 ------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVI  293 (327)
Q Consensus       226 ------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVv  293 (327)
                                  +|+||.|++.|++|+++|++. .+  +.  .++.         .+.           . +.++||+|+
T Consensus       136 i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~-~~--~~--~~d~---------~~~-----------~-~~~~fD~V~  189 (254)
T d2nxca1         136 IAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR-PR--FL--EGSL---------EAA-----------L-PFGPFDLLV  189 (254)
T ss_dssp             HHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC-CE--EE--ESCH---------HHH-----------G-GGCCEEEEE
T ss_pred             HHHHhcCCEEEEEECChHHHHHHHHHHHHcCCc-ee--EE--eccc---------ccc-----------c-cccccchhh
Confidence                        999999999999999999996 33  32  2443         111           1 257899999


Q ss_pred             EcCChHHHHHHHHHHhhccCCCcEEEEeeccCCC
Q 041970          294 ANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ  327 (327)
Q Consensus       294 ANIla~vL~~L~p~i~~~LkpGG~LIlSGIl~~Q  327 (327)
                      ||++++++..+++.+.++|||||+|++|||+.+|
T Consensus       190 ani~~~~l~~l~~~~~~~LkpGG~lilSgil~~~  223 (254)
T d2nxca1         190 ANLYAELHAALAPRYREALVPGGRALLTGILKDR  223 (254)
T ss_dssp             EECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGG
T ss_pred             hccccccHHHHHHHHHHhcCCCcEEEEEecchhh
Confidence            9999999999999999999999999999998765

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.44  E-value=2.1e-13  Score=118.26  Aligned_cols=113  Identities=18%  Similarity=0.252  Sum_probs=87.2

Q ss_pred             ceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCC
Q 041970          184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNI  245 (327)
Q Consensus       184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv  245 (327)
                      +..+.-.||+..-.+.-+.|+++++.|.  ..++++|||+||                  +|+|+.|++.|++|+++|++
T Consensus        22 ~~~~~t~~gvF~~~~~d~~t~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l   99 (194)
T d1dusa_          22 KLKFKTDSGVFSYGKVDKGTKILVENVV--VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNL   99 (194)
T ss_dssp             EEEEEEETTSTTTTSCCHHHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             eEEEEcCCCccCCCCcCHHHHHHHHhCC--cCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCC
Confidence            3446668888433345678999888765  457899999999                  99999999999999999999


Q ss_pred             CCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh----HHHHHHHHHHhhccCCCcEEEEe
Q 041970          246 GPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL----NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       246 ~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla----~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ...++++.  .+|..                    ..+ .+++||+|++|...    +.+..++..+.++|+|||++++.
T Consensus       100 ~~~~i~~~--~~d~~--------------------~~~-~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         100 DNYDIRVV--HSDLY--------------------ENV-KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             TTSCEEEE--ECSTT--------------------TTC-TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceEEEE--Ecchh--------------------hhh-ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            86567764  45542                    012 25789999999763    45677899999999999998764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.30  E-value=1.5e-12  Score=112.11  Aligned_cols=96  Identities=19%  Similarity=0.288  Sum_probs=77.4

Q ss_pred             HHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970          204 KLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN  265 (327)
Q Consensus       204 ~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~  265 (327)
                      .+.+.+|.  +++|++|||+||                  +|+|+.+++.|++|++.||+. +++++.  .+|..     
T Consensus        23 ~~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~-~~v~~~--~gda~-----   92 (186)
T d1l3ia_          23 CLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLG-DNVTLM--EGDAP-----   92 (186)
T ss_dssp             HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC-TTEEEE--ESCHH-----
T ss_pred             HHHHHhcC--CCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCC-cceEEE--ECchh-----
Confidence            44444442  578999999999                  999999999999999999997 578875  45541     


Q ss_pred             ccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                          +..           .....||+|++|.....+..++..+.++|||||+++++.+.
T Consensus        93 ----~~~-----------~~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          93 ----EAL-----------CKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             ----HHH-----------TTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             ----hcc-----------cccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeec
Confidence                111           12568999999998888899999999999999999998764

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.22  E-value=1.4e-11  Score=115.67  Aligned_cols=121  Identities=13%  Similarity=0.080  Sum_probs=97.6

Q ss_pred             CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhc
Q 041970          183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      +.+...+|+...+-||.+.-.|.+.+++.+.+.+|++|||++|                   ||+++.|++.|++|+++|
T Consensus       111 ~Gl~f~vdl~~g~ktGlflDqR~~r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n  190 (317)
T d2b78a2         111 NGISYNVFLNDGLMTGIFLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEAN  190 (317)
T ss_dssp             TTEEEEECSSSSSCCSSCGGGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHT
T ss_pred             CCEEEEEEcccccccCCcHHHHHHHHHHHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHh
Confidence            4567889999999999999999998887777788999999999                   999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhc
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSY  311 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~  311 (327)
                      +++.+++++.  .+|++         +.+..       .....++||+|+.+++.            .-+.+|+....++
T Consensus       191 ~l~~~~~~~i--~~d~~---------~~l~~-------~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~l  252 (317)
T d2b78a2         191 HLDMANHQLV--VMDVF---------DYFKY-------ARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEI  252 (317)
T ss_dssp             TCCCTTEEEE--ESCHH---------HHHHH-------HHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHT
T ss_pred             cccCcceEEE--EccHH---------HHHHH-------HHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHH
Confidence            9976677764  46653         11110       00125689999999873            3466788899999


Q ss_pred             cCCCcEEEEe
Q 041970          312 AKPGAVVGIS  321 (327)
Q Consensus       312 LkpGG~LIlS  321 (327)
                      |+|||+|++|
T Consensus       253 l~pgG~l~~~  262 (317)
T d2b78a2         253 LSENGLIIAS  262 (317)
T ss_dssp             EEEEEEEEEE
T ss_pred             cCCCCEEEEE
Confidence            9999999986

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.21  E-value=1e-11  Score=116.35  Aligned_cols=111  Identities=23%  Similarity=0.293  Sum_probs=89.5

Q ss_pred             cccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970          193 LAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLH  253 (327)
Q Consensus       193 ~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~  253 (327)
                      -.+-||....++...+++.+++++|++|||+||                   +|+++.+++.|++|+++||+. +++++.
T Consensus       122 ~~~~tG~flDqr~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~-~~~~~~  200 (324)
T d2as0a2         122 RGQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE-DRMKFI  200 (324)
T ss_dssp             SSSSSCCCSTTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEE
T ss_pred             cccccCcccchhhHHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCC-ccceee
Confidence            356899999999999999999999999999999                   999999999999999999997 567764


Q ss_pred             ecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                        .+|.+         +....       ......+||+|++|++.            ..+.+++....++|+|||+|+++
T Consensus       201 --~~d~~---------~~~~~-------~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~  262 (324)
T d2as0a2         201 --VGSAF---------EEMEK-------LQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTC  262 (324)
T ss_dssp             --ESCHH---------HHHHH-------HHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             --echhh---------hhhHH-------HHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence              46642         11100       00125689999999873            34667889999999999999986


Q ss_pred             e
Q 041970          322 G  322 (327)
Q Consensus       322 G  322 (327)
                      -
T Consensus       263 s  263 (324)
T d2as0a2         263 S  263 (324)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1.6e-11  Score=109.06  Aligned_cols=99  Identities=18%  Similarity=0.219  Sum_probs=79.3

Q ss_pred             hhHHHHHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 041970          201 ATTKLCLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRT  259 (327)
Q Consensus       201 ~TT~lcLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~  259 (327)
                      |+|.-.+..|.+.  +++|++||||||                   ||+++.+++.|++|++.+|++ +++++.  .+|.
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~-~~v~~~--~~d~   92 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS-ERVHFI--HNDA   92 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEE--ESCC
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhcc-ccchhh--hhHH
Confidence            4566677777777  578999999999                   999999999999999999997 678875  3554


Q ss_pred             CCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEeec
Q 041970          260 FPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       260 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      .                     ....+++||+|++.-....   ...+++.+.+.|||||+++++-.
T Consensus        93 ~---------------------~~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_          93 A---------------------GYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             T---------------------TCCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             h---------------------hccccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence            2                     1113678999999865443   36788999999999999998754

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.09  E-value=1.7e-10  Score=101.42  Aligned_cols=98  Identities=11%  Similarity=0.206  Sum_probs=75.0

Q ss_pred             chhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970          199 EHATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       199 ~H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~  260 (327)
                      ||-.+.+.++.++  +++|++|||+||                  ||+++.+++.|++++..+++.  ++.+.  .+|..
T Consensus         1 ~~~~~~~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~--~~~~~--~~d~~   74 (234)
T d1xxla_           1 HHHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVE--NVRFQ--QGTAE   74 (234)
T ss_dssp             CHHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCC--SEEEE--ECBTT
T ss_pred             CchHHHHHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccc--ccccc--ccccc
Confidence            4556666666655  689999999999                  999999999999999999885  46654  34431


Q ss_pred             CCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEee
Q 041970          261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                               ++          ++ ++++||+|+|+-..+   -...++..+.++|||||+++++-
T Consensus        75 ---------~~----------~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          75 ---------SL----------PF-PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             ---------BC----------CS-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------cc----------cc-cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence                     11          12 367899999986543   25678899999999999998863

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.08  E-value=2e-10  Score=107.54  Aligned_cols=121  Identities=12%  Similarity=0.098  Sum_probs=94.6

Q ss_pred             CceeEEEccCcccCCCchhhHHHHHHHHHhhhc---CCCeeeeeee------------------ecCCHHHHHHHHHHHH
Q 041970          183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIK---GGELFLDYGT------------------VDIDPQVIKSAHQNAA  241 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~---~g~~VLDvGc------------------VDIDp~AV~~A~eNa~  241 (327)
                      +.+.+.++|.-...||..+..+..-+++.+++.   +|++|||++|                  ||+++.|++.|++|++
T Consensus        96 ~gl~f~v~~~~~~~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~  175 (309)
T d2igta1          96 LGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQV  175 (309)
T ss_dssp             TTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHH
T ss_pred             eEEEEEEeccCCCccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhh
Confidence            457788999889999999999999998887753   5789999999                  9999999999999999


Q ss_pred             hcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------HHHHHHHHHH
Q 041970          242 LNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------NPLLQLADHI  308 (327)
Q Consensus       242 lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------~vL~~L~p~i  308 (327)
                      +||+...++++.  .+|++         +.+..       ......+||+||.|+.+             +-+..|+..+
T Consensus       176 ln~~~~~~~~~i--~~D~~---------~~l~~-------~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~  237 (309)
T d2igta1         176 LAGLEQAPIRWI--CEDAM---------KFIQR-------EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDIC  237 (309)
T ss_dssp             HHTCTTSCEEEE--CSCHH---------HHHHH-------HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHH
T ss_pred             hhcccCCcEEEE--eCCHH---------HhHHH-------HhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHH
Confidence            999986667764  56653         11110       01125689999999863             3456678888


Q ss_pred             hhccCCCcEEEEe
Q 041970          309 VSYAKPGAVVGIS  321 (327)
Q Consensus       309 ~~~LkpGG~LIlS  321 (327)
                      ..+|+|||.+++.
T Consensus       238 ~~ll~~~g~~ll~  250 (309)
T d2igta1         238 REILSPKALGLVL  250 (309)
T ss_dssp             HHTBCTTCCEEEE
T ss_pred             HHhcCCCCCEEEE
Confidence            9999999975554

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.04  E-value=2.8e-10  Score=103.69  Aligned_cols=114  Identities=16%  Similarity=0.208  Sum_probs=85.3

Q ss_pred             CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhc
Q 041970          183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      ....+.+||...|-.-.+.+.+..   |.+.+++|++|||+||                   +|++|.|++.+++|+++|
T Consensus        77 ~g~~~~~d~~~~~f~~~~~~er~r---i~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n  153 (260)
T d2frna1          77 NGIKYKLDVAKIMFSPANVKERVR---MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN  153 (260)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHHH---HHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHT
T ss_pred             cCeeEEeccccccEecCCHHHHHH---HHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHh
Confidence            446788999765444445555543   4445789999999999                   999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      +++ +++++.  .+|..                     .+...+.||.|++|.+.... .+++.+.+.|++||++.+-++
T Consensus       154 ~l~-~~v~~~--~~D~~---------------------~~~~~~~~D~Ii~~~p~~~~-~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         154 KVE-DRMSAY--NMDNR---------------------DFPGENIADRILMGYVVRTH-EFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             TCT-TTEEEE--CSCTT---------------------TCCCCSCEEEEEECCCSSGG-GGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCC-ceEEEE--EcchH---------------------HhccCCCCCEEEECCCCchH-HHHHHHHhhcCCCCEEEEEec
Confidence            998 678874  56652                     12235689999999875432 356677788999999877665


Q ss_pred             c
Q 041970          324 L  324 (327)
Q Consensus       324 l  324 (327)
                      .
T Consensus       209 ~  209 (260)
T d2frna1         209 V  209 (260)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=5.4e-10  Score=102.77  Aligned_cols=108  Identities=16%  Similarity=0.244  Sum_probs=80.5

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHH-HhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLL-RSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~L-e~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      ..+.++||+-==   -|.|...+++. ......+.+|||+||                    +|+++.|++.|++|++.|
T Consensus        79 ~~~~v~~~VlIP---RpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~  155 (274)
T d2b3ta1          79 LPLFVSPATLIP---RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL  155 (274)
T ss_dssp             EEEECCTTSCCC---CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH
T ss_pred             eEEEEecccccc---ccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHh
Confidence            456666665221   35677666654 444455678999999                    999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------  298 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------  298 (327)
                      ++.  ++.+.  .+|.+        +            .+ ...+||+||+|++.                         
T Consensus       156 ~~~--~v~~~--~~d~~--------~------------~~-~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~  210 (274)
T d2b3ta1         156 AIK--NIHIL--QSDWF--------S------------AL-AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAAD  210 (274)
T ss_dssp             TCC--SEEEE--CCSTT--------G------------GG-TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHH
T ss_pred             Ccc--cceee--ecccc--------c------------cc-CCCceeEEEecchhhhhhhhcccccccccchhhhccccc
Confidence            985  46664  67764        1            11 24689999999752                         


Q ss_pred             ---HHHHHHHHHHhhccCCCcEEEE
Q 041970          299 ---NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       299 ---~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                         ..+.+++....++|+|||.+++
T Consensus       211 dGl~~~~~i~~~a~~~L~~~G~l~l  235 (274)
T d2b3ta1         211 SGMADIVHIIEQSRNALVSGGFLLL  235 (274)
T ss_dssp             HHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ccchHHHHHHHHHHHhcCCCCEEEE
Confidence               3567789999999999999988

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.00  E-value=9.6e-10  Score=96.06  Aligned_cols=102  Identities=17%  Similarity=0.205  Sum_probs=79.3

Q ss_pred             CchhhHHHHHHHHHhhhcCCCeeeeeee----------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEec
Q 041970          198 GEHATTKLCLLLLRSLIKGGELFLDYGT----------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLV  255 (327)
Q Consensus       198 G~H~TT~lcLe~Le~~~~~g~~VLDvGc----------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~  255 (327)
                      |.....+++..++.++.+++.+|||+||                      +|+++.+++.|+++++.++.. .++.+.  
T Consensus        21 ~Y~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~-~~~~~~--   97 (225)
T d1im8a_          21 GYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEIL--   97 (225)
T ss_dssp             THHHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCS-SCEEEE--
T ss_pred             CHHHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhccc-chhhhc--
Confidence            3455677888888889999999999999                      999999999999999887765 455543  


Q ss_pred             CCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          256 PDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .+|..                     .. +...+|+|+++...+     -...++..+.+.|||||.|+++-+.
T Consensus        98 ~~d~~---------------------~~-~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_          98 CNDIR---------------------HV-EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             CSCTT---------------------TC-CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cchhh---------------------cc-ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence            34431                     12 246799999986543     3457899999999999999998643

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.00  E-value=3.8e-10  Score=96.35  Aligned_cols=103  Identities=14%  Similarity=0.134  Sum_probs=72.5

Q ss_pred             cCCCchhhHHHHHHHH----HhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEE
Q 041970          195 FGTGEHATTKLCLLLL----RSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKL  252 (327)
Q Consensus       195 FGTG~H~TT~lcLe~L----e~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v  252 (327)
                      ++.++.|||.++-|.|    ...+..|.+|||+||                  +|+|+.|++.|++|++.|++. +++..
T Consensus        16 ~~~~~Rpt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~-~~v~~   94 (171)
T d1ws6a1          16 VPASARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLG-ARVVA   94 (171)
T ss_dssp             CCTTCCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCC-CEEEC
T ss_pred             CCCCCCCCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccc-cceee
Confidence            3456899999988754    444567899999999                  999999999999999999997 44432


Q ss_pred             EecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC-----hHHHHHHHHHHhhccCCCcEEEE
Q 041970          253 HLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       253 ~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl-----a~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                          .+.         +.....       .....++||+|++|++     ...+..++.  ..+|+|||++++
T Consensus        95 ----~~~---------d~~~~~-------~~~~~~~fD~If~DPPY~~~~~~~l~~l~~--~~ll~~~g~ivi  145 (171)
T d1ws6a1          95 ----LPV---------EVFLPE-------AKAQGERFTVAFMAPPYAMDLAALFGELLA--SGLVEAGGLYVL  145 (171)
T ss_dssp             ----SCH---------HHHHHH-------HHHTTCCEEEEEECCCTTSCTTHHHHHHHH--HTCEEEEEEEEE
T ss_pred             ----eeh---------hccccc-------ccccCCccceeEEccccccCHHHHHHHHHH--cCCcCCCeEEEE
Confidence                221         111000       0012568999999985     244444443  358999999886

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.96  E-value=1.2e-09  Score=96.36  Aligned_cols=91  Identities=12%  Similarity=0.135  Sum_probs=68.7

Q ss_pred             HHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          205 LCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       205 lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      ..++.+.++..++++|||+||                  +|+++.+++.|++++..++..   +++.  .+|..      
T Consensus        26 ~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~---v~~~--~~d~~------   94 (246)
T d1y8ca_          26 FIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLK---PRLA--CQDIS------   94 (246)
T ss_dssp             HHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCC---CEEE--CCCGG------
T ss_pred             HHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCcc---ceee--ccchh------
Confidence            455666666556789999999                  999999999999999888864   5553  45541      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEEE--cCC-----hHHHHHHHHHHhhccCCCcEEEEe
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVIA--NIL-----LNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvA--NIl-----a~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                                     .+...++||+|+|  |.+     ..-+..++..++++|||||.|+++
T Consensus        95 ---------------~~~~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          95 ---------------NLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             ---------------GCCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ---------------hhcccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence                           1222568999998  332     235667899999999999999874

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.95  E-value=1e-09  Score=95.09  Aligned_cols=91  Identities=18%  Similarity=0.219  Sum_probs=68.8

Q ss_pred             HHHHhh-hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccc
Q 041970          208 LLLRSL-IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERV  268 (327)
Q Consensus       208 e~Le~~-~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~  268 (327)
                      ++|+.. ++++++||||||                  +|+++.+++.|+++++.++..  ++++.  .+|..        
T Consensus         6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~--~i~~~--~~d~~--------   73 (231)
T d1vl5a_           6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQ--QVEYV--QGDAE--------   73 (231)
T ss_dssp             HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEE--ECCC---------
T ss_pred             HHHHhcCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccc--ccccc--ccccc--------
Confidence            344443 478899999999                  999999999999999999874  57765  34531        


Q ss_pred             cchhhhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEee
Q 041970          269 DGIVEYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       269 ~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSG  322 (327)
                       ++          ++ +.++||+|+++-..+.   ...++.++.++|||||+|++..
T Consensus        74 -~l----------~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          74 -QM----------PF-TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             -CC----------CS-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -cc----------cc-cccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence             11          12 3678999999865432   4567899999999999999853

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.95  E-value=1.3e-09  Score=93.46  Aligned_cols=91  Identities=21%  Similarity=0.198  Sum_probs=68.2

Q ss_pred             HHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcccc
Q 041970          206 CLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNER  267 (327)
Q Consensus       206 cLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~  267 (327)
                      +-..++++++++.+||||||                  +|+++.+++.|++++...+..   +.+.  .+|..       
T Consensus        27 ~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~---~~~~--~~d~~-------   94 (226)
T d1ve3a1          27 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESN---VEFI--VGDAR-------   94 (226)
T ss_dssp             HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---CEEE--ECCTT-------
T ss_pred             HHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccccc---cccc--ccccc-------
Confidence            34466677788899999999                  999999999999998887754   2332  24431       


Q ss_pred             ccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEe
Q 041970          268 VDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       268 ~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                        ++          .. ..++||+|+++-..+     .+..++..+.++|||||+|++.
T Consensus        95 --~l----------~~-~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1          95 --KL----------SF-EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             --SC----------CS-CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --cc----------cc-cCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence              11          11 257899999985432     4667899999999999999876

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.92  E-value=1.7e-09  Score=96.26  Aligned_cols=91  Identities=24%  Similarity=0.330  Sum_probs=69.8

Q ss_pred             HHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcccccc
Q 041970          209 LLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVD  269 (327)
Q Consensus       209 ~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~  269 (327)
                      +++++.++|++|||+||                   ||+++.+++.|++.+..++.. .++.+.  .+|...        
T Consensus        17 lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~-~~v~f~--~~D~~~--------   85 (252)
T d1ri5a_          17 LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR-FKVFFR--AQDSYG--------   85 (252)
T ss_dssp             HHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS-SEEEEE--ESCTTT--------
T ss_pred             HHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCC-cceEEE--Ecchhh--------
Confidence            46677889999999999                   999999999999998887765 456664  355420        


Q ss_pred             chhhhcccccccCCCCCCCeeEEEEcCChH-------HHHHHHHHHhhccCCCcEEEEe
Q 041970          270 GIVEYLSSHKIRGISETEEYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       270 ~l~~~~~~~~~~~~~~~~~fDlVvANIla~-------vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                                 ......++||+|+++-..+       -+..++..+.++|||||+||++
T Consensus        86 -----------~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          86 -----------RHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             -----------SCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -----------hcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence                       0112256899999986543       3467889999999999999875

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.92  E-value=1.1e-09  Score=102.15  Aligned_cols=118  Identities=19%  Similarity=0.268  Sum_probs=87.5

Q ss_pred             CceeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcC
Q 041970          183 QATNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNN  244 (327)
Q Consensus       183 ~~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNg  244 (327)
                      +.+...+++....-||..--.|..-.+++ . ..|++|||+||                  +|+++.|++.|++|+++||
T Consensus       114 ~G~~f~v~l~~~~~tG~flDqr~~r~~~~-~-~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ng  191 (318)
T d1wxxa2         114 GRVRYLVDLRAGQKTGAYLDQRENRLYME-R-FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNG  191 (318)
T ss_dssp             TTEEEEEECSTTSCCCCCGGGHHHHHHGG-G-CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEechhccccccchhhhhhHHHHH-H-hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcC
Confidence            34567888888899998777776654443 2 36899999999                  9999999999999999999


Q ss_pred             CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhcc
Q 041970          245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSYA  312 (327)
Q Consensus       245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~L  312 (327)
                      ++  .+++.  .+|.+         +..+.       .....++||+|++|+..            ..+..++....++|
T Consensus       192 l~--~~~~i--~~d~~---------~~~~~-------~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lL  251 (318)
T d1wxxa2         192 LG--NVRVL--EANAF---------DLLRR-------LEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLL  251 (318)
T ss_dssp             CT--TEEEE--ESCHH---------HHHHH-------HHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTE
T ss_pred             CC--Cccee--eccHH---------HHhhh-------hHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHc
Confidence            96  35553  45542         11110       00125789999999863            33457888899999


Q ss_pred             CCCcEEEEee
Q 041970          313 KPGAVVGISG  322 (327)
Q Consensus       313 kpGG~LIlSG  322 (327)
                      +|||.|+++.
T Consensus       252 kpGG~Lv~~s  261 (318)
T d1wxxa2         252 KEGGILATAS  261 (318)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCCEEEEEe
Confidence            9999999864

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.91  E-value=2.6e-09  Score=96.49  Aligned_cols=88  Identities=17%  Similarity=0.246  Sum_probs=70.1

Q ss_pred             hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          214 IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       214 ~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      +.+|.+||||||                   +|+++.+++.|+++++..|+. +++++.  .+|..         ++   
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~-~~v~~~--~~d~~---------~l---  129 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA-DNITVK--YGSFL---------EI---  129 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT-TTEEEE--ECCTT---------SC---
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccc-cccccc--ccccc---------cc---
Confidence            467899999999                   999999999999999999997 678875  35542         11   


Q ss_pred             cccccccCCCCCCCeeEEEEcCChH---HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          275 LSSHKIRGISETEEYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla~---vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                             ++ +.++||+|+++-...   -...++..+.++|||||+|+++.+.
T Consensus       130 -------~~-~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~  174 (282)
T d2o57a1         130 -------PC-EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM  174 (282)
T ss_dssp             -------SS-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -------cc-cccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEee
Confidence                   12 357899999986442   2467889999999999999998654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=1.2e-08  Score=94.14  Aligned_cols=112  Identities=9%  Similarity=0.087  Sum_probs=81.3

Q ss_pred             EEEccCcccCCCch--------hhHHHHHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHH
Q 041970          187 IILNPGLAFGTGEH--------ATTKLCLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAH  237 (327)
Q Consensus       187 I~idPG~AFGTG~H--------~TT~lcLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~  237 (327)
                      +.|+|.|.+.+|.-        +..+--++++.+.  +++|++||||||                   +++++..++.|+
T Consensus        22 ~~Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~  101 (291)
T d1kpia_          22 LWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK  101 (291)
T ss_dssp             HHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH
T ss_pred             HhcCCCCCeeeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH
Confidence            34666666544432        2223334444333  468999999999                   999999999999


Q ss_pred             HHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------------HHHHHH
Q 041970          238 QNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------------PLLQLA  305 (327)
Q Consensus       238 eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------------vL~~L~  305 (327)
                      +.++..|+. +++.+..  .|.                     +.  .+++||.|++.=..+            .+..++
T Consensus       102 ~~~~~~~l~-~~v~~~~--~d~---------------------~~--~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f  155 (291)
T d1kpia_         102 AMFDEVDSP-RRKEVRI--QGW---------------------EE--FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFF  155 (291)
T ss_dssp             HHHHHSCCS-SCEEEEE--CCG---------------------GG--CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHH
T ss_pred             HHHHhhccc-hhhhhhh--hcc---------------------cc--cccccceEeechhHHhcchhhhhhHHHHHHHHH
Confidence            999999987 6777643  221                     11  267899999986543            357899


Q ss_pred             HHHhhccCCCcEEEEeecc
Q 041970          306 DHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       306 p~i~~~LkpGG~LIlSGIl  324 (327)
                      ..+.++|||||++++..|.
T Consensus       156 ~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         156 KKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             HHHHHTSCTTCEEEEEEEE
T ss_pred             HHHHHhCCCCCceEEEEEe
Confidence            9999999999999998875

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.81  E-value=1.4e-08  Score=92.93  Aligned_cols=108  Identities=16%  Similarity=0.283  Sum_probs=74.7

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHHHhhhc--CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhc
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIK--GGELFLDYGT-------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~--~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      ..+.++||+-=   --|.|.+.++++.++.+  +..+|+|+||                   +|+++.|++.|++|+++|
T Consensus        80 ~~f~v~~~vlI---PRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~  156 (271)
T d1nv8a_          80 LSFLVEEGVFV---PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH  156 (271)
T ss_dssp             EEEECCTTSCC---CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             eEEEEecCccC---chhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHc
Confidence            45556665421   13567777777666543  3458999999                   999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-------------------------
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-------------------------  298 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-------------------------  298 (327)
                      ++. +++.+.  .++.+        +..           ....++||+||+|++.                         
T Consensus       157 ~~~-~~~~i~--~~~~~--------~~~-----------~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dG  214 (271)
T d1nv8a_         157 GVS-DRFFVR--KGEFL--------EPF-----------KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDG  214 (271)
T ss_dssp             TCT-TSEEEE--ESSTT--------GGG-----------GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTS
T ss_pred             CCC-ceeEEe--ecccc--------ccc-----------ccccCcccEEEEcccccCcccccceeeeeccccccccccch
Confidence            997 567664  35542        111           0114689999999751                         


Q ss_pred             -HHHHHHHHHHhhccCCCcEEEE
Q 041970          299 -NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       299 -~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                       +.+.++   +.++|+|||++++
T Consensus       215 l~~~r~i---~~~~L~~~G~l~~  234 (271)
T d1nv8a_         215 LDFYREF---FGRYDTSGKIVLM  234 (271)
T ss_dssp             CHHHHHH---HHHCCCTTCEEEE
T ss_pred             HHHHHHH---HHHhcCCCCEEEE
Confidence             334444   4578999999887

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.3e-09  Score=92.48  Aligned_cols=106  Identities=16%  Similarity=0.207  Sum_probs=77.8

Q ss_pred             ccCCCchhhHHHHHHHHHhhh------cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCC
Q 041970          194 AFGTGEHATTKLCLLLLRSLI------KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPK  248 (327)
Q Consensus       194 AFGTG~H~TT~lcLe~Le~~~------~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~  248 (327)
                      .||..+....+....+|.+.+      .++.+|||+||                   ||+++.+|+.|+++++.++..  
T Consensus        32 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~--  109 (222)
T d2ex4a1          32 GYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR--  109 (222)
T ss_dssp             TCGGGHHHHHHHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGG--
T ss_pred             CccccchhhHHHHHHHHHHHHHhccCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccc--
Confidence            466666666666667777653      34579999999                   999999999999999888764  


Q ss_pred             cEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEeec
Q 041970          249 KMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       249 ~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      ++++.  ++|..         ++          .. +.++||+|+++-..+     .+..++..+.+.|||||.++++.-
T Consensus       110 ~~~f~--~~d~~---------~~----------~~-~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~  167 (222)
T d2ex4a1         110 VRNYF--CCGLQ---------DF----------TP-EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  167 (222)
T ss_dssp             EEEEE--ECCGG---------GC----------CC-CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccc--ccccc---------cc----------cc-ccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence            45654  34541         11          11 367899999985442     346789999999999999998743

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.81  E-value=7.2e-09  Score=88.76  Aligned_cols=85  Identities=19%  Similarity=0.320  Sum_probs=65.2

Q ss_pred             hcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          214 IKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       214 ~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      +++| +|||+||                  +|+++.+++.|+++++..+++  .+++..  .|..               
T Consensus        29 ~~~g-rvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~--~d~~---------------   88 (198)
T d2i6ga1          29 VAPG-RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLD--NLQTDL--VDLN---------------   88 (198)
T ss_dssp             SCSC-EEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCT--TEEEEE--CCTT---------------
T ss_pred             CCCC-cEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhcccc--chhhhh--eecc---------------
Confidence            3444 8999999                  999999999999999999886  466542  4431               


Q ss_pred             ccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          276 SSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                            .....++||+|+|+...+     .+..++..+.+.|+|||++++....
T Consensus        89 ------~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          89 ------TLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             ------TCCCCCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             ------cccccccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence                  111267899999986543     4567899999999999999987543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.77  E-value=7.6e-09  Score=94.76  Aligned_cols=113  Identities=12%  Similarity=0.118  Sum_probs=80.4

Q ss_pred             EEEccCcccCCCchh--------hHHHHHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHH
Q 041970          187 IILNPGLAFGTGEHA--------TTKLCLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAH  237 (327)
Q Consensus       187 I~idPG~AFGTG~H~--------TT~lcLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~  237 (327)
                      +.|||.|-+.+|.-+        ...-.++.+.+.  +++|++||||||                   +|+++..++.|+
T Consensus        13 ~~ld~~m~YS~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~   92 (280)
T d2fk8a1          13 LFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE   92 (280)
T ss_dssp             TTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH
T ss_pred             HhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHH
Confidence            457777876554321        122233433333  468999999999                   999999999999


Q ss_pred             HHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhcc
Q 041970          238 QNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYA  312 (327)
Q Consensus       238 eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~L  312 (327)
                      +.++..++. .++.+..  .|.                     ..+  .++||.|++--..+     -+..++..+.+.|
T Consensus        93 ~~~~~~~l~-~~~~~~~--~d~---------------------~~~--~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~L  146 (280)
T d2fk8a1          93 QVLASIDTN-RSRQVLL--QGW---------------------EDF--AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIM  146 (280)
T ss_dssp             HHHHTSCCS-SCEEEEE--SCG---------------------GGC--CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHS
T ss_pred             HHHHhhccc-cchhhhh--hhh---------------------hhh--ccchhhhhHhhHHHHhhhhhHHHHHHHHHhcc
Confidence            999999986 5566532  222                     112  57899999875543     3467899999999


Q ss_pred             CCCcEEEEeeccC
Q 041970          313 KPGAVVGISGILS  325 (327)
Q Consensus       313 kpGG~LIlSGIl~  325 (327)
                      ||||++++..|+.
T Consensus       147 kpgG~~~i~~i~~  159 (280)
T d2fk8a1         147 PADGRMTVQSSVS  159 (280)
T ss_dssp             CTTCEEEEEEEEC
T ss_pred             CCCceEEEEEeec
Confidence            9999999977653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.74  E-value=1.1e-08  Score=89.57  Aligned_cols=80  Identities=20%  Similarity=0.331  Sum_probs=59.6

Q ss_pred             CCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhccc
Q 041970          216 GGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSS  277 (327)
Q Consensus       216 ~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~  277 (327)
                      ++++|||+||                  ||+++.+++.|++|++.++..   +.+.  .+|..                 
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~---i~~~--~~d~~-----------------   98 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLK---IEFL--QGDVL-----------------   98 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---CEEE--ESCGG-----------------
T ss_pred             CCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccccccccccc---chhe--ehhhh-----------------
Confidence            4457888888                  999999999999999988764   5554  34431                 


Q ss_pred             ccccCCCCCCCeeEEEEcC--Ch----HHHHHHHHHHhhccCCCcEEEEe
Q 041970          278 HKIRGISETEEYDVVIANI--LL----NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       278 ~~~~~~~~~~~fDlVvANI--la----~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                          .+...++||+|++.-  +.    .-....+..+.++|||||+++++
T Consensus        99 ----~l~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1          99 ----EIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             ----GCCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----hcccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence                122256899999853  21    23567889999999999999885

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.72  E-value=4.3e-09  Score=92.57  Aligned_cols=87  Identities=18%  Similarity=0.294  Sum_probs=63.6

Q ss_pred             HHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCC
Q 041970          205 LCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSS  263 (327)
Q Consensus       205 lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~  263 (327)
                      .++++|+  +++|++|||+||                     +|+++..++.|++|++.+++.  ++.+.  .+|..   
T Consensus        66 ~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~--n~~~~--~~d~~---  136 (213)
T d1dl5a1          66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE--NVIFV--CGDGY---  136 (213)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC--SEEEE--ESCGG---
T ss_pred             HHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc--ccccc--cCchH---
Confidence            3455554  789999999999                     999999999999999999986  34443  35541   


Q ss_pred             ccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          264 MNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       264 ~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                            +           .....++||+|+++-....   +.+.+.+.|||||+|++
T Consensus       137 ------~-----------~~~~~~~fD~I~~~~~~~~---~p~~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         137 ------Y-----------GVPEFSPYDVIFVTVGVDE---VPETWFTQLKEGGRVIV  173 (213)
T ss_dssp             ------G-----------CCGGGCCEEEEEECSBBSC---CCHHHHHHEEEEEEEEE
T ss_pred             ------H-----------ccccccchhhhhhhccHHH---hHHHHHHhcCCCcEEEE
Confidence                  0           1122568999999865432   22356778999999987

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.9e-09  Score=94.63  Aligned_cols=93  Identities=18%  Similarity=0.267  Sum_probs=67.9

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCC---CCcEEEEecCCC
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIG---PKKMKLHLVPDR  258 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~---~~~v~v~~~~~d  258 (327)
                      ...+|++|...+++|++|||+||                     +|+++.+++.|++|++.+++.   ..++.+.  .+|
T Consensus        63 ~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~--~gD  140 (224)
T d1i1na_          63 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV--VGD  140 (224)
T ss_dssp             HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE--ESC
T ss_pred             HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEE--Eee
Confidence            45667777666789999999999                     999999999999999887653   1345554  355


Q ss_pred             CCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          259 TFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       259 ~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      ..    .                .....++||+|+.+-....   +...+.+.|||||+|++
T Consensus       141 ~~----~----------------~~~~~~~fD~I~~~~~~~~---ip~~l~~~LkpGG~LV~  179 (224)
T d1i1na_         141 GR----M----------------GYAEEAPYDAIHVGAAAPV---VPQALIDQLKPGGRLIL  179 (224)
T ss_dssp             GG----G----------------CCGGGCCEEEEEECSBBSS---CCHHHHHTEEEEEEEEE
T ss_pred             cc----c----------------ccchhhhhhhhhhhcchhh---cCHHHHhhcCCCcEEEE
Confidence            42    0                1123568999999864432   22457789999999987

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.7e-08  Score=88.72  Aligned_cols=52  Identities=21%  Similarity=0.236  Sum_probs=42.6

Q ss_pred             hhHHHHHHHHHhhhc-------CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970          201 ATTKLCLLLLRSLIK-------GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLH  253 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~-------~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~  253 (327)
                      ||...-.+++++++.       ...++||+||                    +|||+.|++.|++|+++|++. +++.+.
T Consensus        39 ~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~-~~~~~~  117 (250)
T d2h00a1          39 PLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVV  117 (250)
T ss_dssp             HHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEE
T ss_pred             CCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCC-cceeee
Confidence            555666778887652       2348999999                    999999999999999999998 678765

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.69  E-value=9.4e-09  Score=93.09  Aligned_cols=83  Identities=25%  Similarity=0.227  Sum_probs=64.2

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      +++|++|||+||                     +|+++.+++.|++|++.++.. .++++.  .+|..         +  
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~-~nv~~~--~~Di~---------~--  148 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTS--RSDIA---------D--  148 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEE--CSCTT---------T--
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCC-CceEEE--Eeeee---------c--
Confidence            467778888887                     999999999999999988664 567765  45642         1  


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                               .+ .+..||.|+.|+....  ..++.+.+.|||||+|++..
T Consensus       149 ---------~~-~~~~fD~V~ld~p~p~--~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         149 ---------FI-SDQMYDAVIADIPDPW--NHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             ---------CC-CSCCEEEEEECCSCGG--GSHHHHHHTEEEEEEEEEEE
T ss_pred             ---------cc-ccceeeeeeecCCchH--HHHHHHHHhcCCCceEEEEe
Confidence                     11 2568999999987543  46788999999999998764

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.5e-08  Score=86.52  Aligned_cols=95  Identities=14%  Similarity=0.058  Sum_probs=63.7

Q ss_pred             cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCc--------------------------
Q 041970          215 KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKK--------------------------  249 (327)
Q Consensus       215 ~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~--------------------------  249 (327)
                      .+|++|||+||                   +|+++.+++.|++|++.++.....                          
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            45679999999                   999999999999999877643110                          


Q ss_pred             -EEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-------HHHHHHHHhhccCCCcEEEEe
Q 041970          250 -MKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       250 -v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-------L~~L~p~i~~~LkpGG~LIlS  321 (327)
                       +.-.. ..+..       .+..         ......++||+|+++-..+.       +..++..+.++|||||+||++
T Consensus       130 ~~~~~~-~~~~~-------~~~~---------~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~  192 (257)
T d2a14a1         130 AVKRVL-KCDVH-------LGNP---------LAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT  192 (257)
T ss_dssp             HEEEEE-ECCTT-------SSST---------TTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhhccc-ccccc-------cccc---------cccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEE
Confidence             00000 00000       0000         01113678999999866543       456788999999999999999


Q ss_pred             eccCC
Q 041970          322 GILSE  326 (327)
Q Consensus       322 GIl~~  326 (327)
                      +++..
T Consensus       193 ~~~~~  197 (257)
T d2a14a1         193 VTLRL  197 (257)
T ss_dssp             EESSC
T ss_pred             Eeccc
Confidence            98753

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.65  E-value=7e-08  Score=88.63  Aligned_cols=85  Identities=13%  Similarity=0.097  Sum_probs=68.9

Q ss_pred             hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          214 IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       214 ~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      +++|++||||||                   +++++.-++.|++.++..|+. +++++..  +|.               
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~-~~v~~~~--~d~---------------  121 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL-RSKRVLL--AGW---------------  121 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCC-SCEEEEE--SCG---------------
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhh-hhhHHHH--hhh---------------
Confidence            468999999999                   999999999999999999987 6788753  332               


Q ss_pred             cccccccCCCCCCCeeEEEEcCChHH-----HHHHHHHHhhccCCCcEEEEeecc
Q 041970          275 LSSHKIRGISETEEYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla~v-----L~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                            ..+  +++||.|++--..+.     ...++..+.++|||||++++.-|.
T Consensus       122 ------~~~--~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         122 ------EQF--DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             ------GGC--CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ------hcc--cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence                  112  578999999755433     467899999999999999987764

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=2.7e-08  Score=85.32  Aligned_cols=102  Identities=14%  Similarity=0.145  Sum_probs=70.4

Q ss_pred             CCCchhhHHHHHHHHHhhh---cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970          196 GTGEHATTKLCLLLLRSLI---KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLH  253 (327)
Q Consensus       196 GTG~H~TT~lcLe~Le~~~---~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~  253 (327)
                      |.+++|||..+-|.|-..+   -.+.+|||++|                   ||+|+.|++.+++|++.+++.  .+++.
T Consensus        20 ~~~~RPt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~--~~~ii   97 (183)
T d2fpoa1          20 SPGLRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG--NARVV   97 (183)
T ss_dssp             C------CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC--SEEEE
T ss_pred             CCCcCcCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcccc--ceeee
Confidence            5688999998888776554   36789999999                   999999999999999998875  35553


Q ss_pred             ecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--HHHHHHHHHHh--hccCCCcEEEE
Q 041970          254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--NPLLQLADHIV--SYAKPGAVVGI  320 (327)
Q Consensus       254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~vL~~L~p~i~--~~LkpGG~LIl  320 (327)
                        .+|++         +.+.        .  ...+||+|+++++.  ..+..++..+.  ..|+++|.+++
T Consensus        98 --~~d~~---------~~l~--------~--~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIii  147 (183)
T d2fpoa1          98 --NSNAM---------SFLA--------Q--KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYV  147 (183)
T ss_dssp             --CSCHH---------HHHS--------S--CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             --eeccc---------cccc--------c--cccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEE
Confidence              45542         1111        1  25789999999873  33455555554  46999999887

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.63  E-value=1.7e-08  Score=87.29  Aligned_cols=85  Identities=15%  Similarity=0.207  Sum_probs=59.4

Q ss_pred             HHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccc
Q 041970          207 LLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERV  268 (327)
Q Consensus       207 Le~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~  268 (327)
                      .+.+.++..++.+|||+||                  +|+++.+++.|++|.    .. . + +   .++..        
T Consensus        33 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~----~~-~-~-~---~~~~~--------   94 (246)
T d2avna1          33 GSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKG----VK-N-V-V---EAKAE--------   94 (246)
T ss_dssp             HHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHT----CS-C-E-E---ECCTT--------
T ss_pred             HHHHHHhcCCCCEEEEECCCCchhcccccccceEEEEeeccccccccccccc----cc-c-c-c---ccccc--------
Confidence            3445666778889999999                  999999999999863    22 1 1 1   23321        


Q ss_pred             cchhhhcccccccCCCCCCCeeEEEEcC-ChH---HHHHHHHHHhhccCCCcEEEEe
Q 041970          269 DGIVEYLSSHKIRGISETEEYDVVIANI-LLN---PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       269 ~~l~~~~~~~~~~~~~~~~~fDlVvANI-la~---vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                       ++          .. ++++||+|+|.- ..+   -...++..+.+.|||||.++++
T Consensus        95 -~l----------~~-~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1          95 -DL----------PF-PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             -SC----------CS-CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -cc----------cc-ccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence             11          12 257899999853 222   2346788999999999999986

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.62  E-value=4.2e-08  Score=81.47  Aligned_cols=91  Identities=11%  Similarity=0.154  Sum_probs=66.2

Q ss_pred             HHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccc
Q 041970          208 LLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERV  268 (327)
Q Consensus       208 e~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~  268 (327)
                      .+|..++ .|++|||+||                   ||+|+.|++.+++|++.|++. +++++.  .+|+.        
T Consensus         7 n~l~~~~-~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~-~~~~ii--~~D~~--------   74 (152)
T d2esra1           7 NMIGPYF-NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE-NRFTLL--KMEAE--------   74 (152)
T ss_dssp             HHHCSCC-CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG-GGEEEE--CSCHH--------
T ss_pred             HHHHhhC-CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccc-cchhhh--ccccc--------
Confidence            4444443 4889999999                   999999999999999999997 677764  56642        


Q ss_pred             cchhhhcccccccCCCCCCCeeEEEEcCCh--HHHHHHHHHHh--hccCCCcEEEEe
Q 041970          269 DGIVEYLSSHKIRGISETEEYDVVIANILL--NPLLQLADHIV--SYAKPGAVVGIS  321 (327)
Q Consensus       269 ~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~vL~~L~p~i~--~~LkpGG~LIlS  321 (327)
                       +.++        .  ...+||+|++|++.  ......++.+.  ++|+|||.+++.
T Consensus        75 -~~l~--------~--~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          75 -RAID--------C--LTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             -HHHH--------H--BCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             -cccc--------c--cccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence             1111        1  25789999999873  34445555543  579999999873

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.55  E-value=7.2e-08  Score=87.35  Aligned_cols=81  Identities=16%  Similarity=0.219  Sum_probs=61.5

Q ss_pred             cCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          215 KGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       215 ~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      .++.+|||+||                     +|+++.+++.|++|++.++..   +++.  .+|..             
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~---~~f~--~~d~~-------------   87 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD---SEFL--EGDAT-------------   87 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSE---EEEE--ESCTT-------------
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccc---cccc--ccccc-------------
Confidence            45679999999                     899999999999999888753   5553  34541             


Q ss_pred             hcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEe
Q 041970          274 YLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlS  321 (327)
                              .+...++||+|+++-..+.   ...++..+.+.|||||++++.
T Consensus        88 --------~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~  130 (281)
T d2gh1a1          88 --------EIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICF  130 (281)
T ss_dssp             --------TCCCSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEE
T ss_pred             --------cccccCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEE
Confidence                    1112467999999965432   356889999999999998874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.49  E-value=3.9e-08  Score=87.50  Aligned_cols=85  Identities=22%  Similarity=0.255  Sum_probs=60.6

Q ss_pred             HHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          205 LCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       205 lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      .+|+.|+  +++|++||||||                  +|+++.+++.|++|...+    .++.+.  .+|..    . 
T Consensus        61 ~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~----~nv~~~--~~d~~----~-  127 (224)
T d1vbfa_          61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYY----NNIKLI--LGDGT----L-  127 (224)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTC----SSEEEE--ESCGG----G-
T ss_pred             HHHHHhh--hcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcc----cccccc--cCchh----h-
Confidence            3455554  689999999999                  999999999999987643    246654  35542    0 


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                                     .....++||.|+++-....   +.+.+.+.|||||+|++
T Consensus       128 ---------------g~~~~~pfD~Iiv~~a~~~---ip~~l~~qLk~GGrLV~  163 (224)
T d1vbfa_         128 ---------------GYEEEKPYDRVVVWATAPT---LLCKPYEQLKEGGIMIL  163 (224)
T ss_dssp             ---------------CCGGGCCEEEEEESSBBSS---CCHHHHHTEEEEEEEEE
T ss_pred             ---------------cchhhhhHHHHHhhcchhh---hhHHHHHhcCCCCEEEE
Confidence                           1222578999998754332   23456788999999987

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.49  E-value=9.4e-08  Score=83.17  Aligned_cols=76  Identities=20%  Similarity=0.211  Sum_probs=55.4

Q ss_pred             cCCCchhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEec
Q 041970          195 FGTGEHATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLV  255 (327)
Q Consensus       195 FGTG~H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~  255 (327)
                      |.|..|-..+++......-...|++|||+||                   +|+|+.|++.|++|++.+++.   .++.  
T Consensus        25 y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~---~~~~--   99 (201)
T d1wy7a1          25 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK---FKVF--   99 (201)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS---EEEE--
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC---ceEE--
Confidence            6677776666665444433346889999999                   999999999999999999875   3443  


Q ss_pred             CCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh
Q 041970          256 PDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL  298 (327)
Q Consensus       256 ~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla  298 (327)
                      .+|..                     .+  .++||+|++|+..
T Consensus       100 ~~d~~---------------------~~--~~~fD~Vi~nPP~  119 (201)
T d1wy7a1         100 IGDVS---------------------EF--NSRVDIVIMNPPF  119 (201)
T ss_dssp             ESCGG---------------------GC--CCCCSEEEECCCC
T ss_pred             ECchh---------------------hh--CCcCcEEEEcCcc
Confidence            23431                     12  5789999999874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.48  E-value=7e-08  Score=85.32  Aligned_cols=104  Identities=17%  Similarity=0.279  Sum_probs=73.2

Q ss_pred             eeEEEccCcccCCCchhhH-HHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcC
Q 041970          185 TNIILNPGLAFGTGEHATT-KLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNN  244 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT-~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNg  244 (327)
                      ..|.|+.|...   .-|.+ ..+|++|+  +++|++||||||                   +|+|+..++.|++|++..+
T Consensus        51 ~~l~i~~g~~i---s~P~~~a~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g  125 (215)
T d1jg1a_          51 EPLPIPAGQTV---SAPHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAG  125 (215)
T ss_dssp             SCEECSTTCEE---CCHHHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCcccchhhhh---hhhhhHHHHHHhhc--cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcC
Confidence            34555555421   22443 56677765  789999999999                   9999999999999999999


Q ss_pred             CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          245 IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       245 v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      +.  ++.+.  .+|..    .                .....++||.|+.+--...   +-..+.+.|+|||+|++
T Consensus       126 ~~--nv~~~--~gd~~----~----------------g~~~~~pfD~Iiv~~a~~~---ip~~l~~qL~~gGrLv~  174 (215)
T d1jg1a_         126 VK--NVHVI--LGDGS----K----------------GFPPKAPYDVIIVTAGAPK---IPEPLIEQLKIGGKLII  174 (215)
T ss_dssp             CC--SEEEE--ESCGG----G----------------CCGGGCCEEEEEECSBBSS---CCHHHHHTEEEEEEEEE
T ss_pred             Cc--eeEEE--ECccc----c----------------CCcccCcceeEEeeccccc---CCHHHHHhcCCCCEEEE
Confidence            85  46664  46642    0                1223678999998864432   22346678999999986

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.5e-07  Score=87.57  Aligned_cols=114  Identities=17%  Similarity=0.146  Sum_probs=78.2

Q ss_pred             EEccCcccCCCchhhHHHHH--HHHHhh-hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhc-
Q 041970          188 ILNPGLAFGTGEHATTKLCL--LLLRSL-IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALN-  243 (327)
Q Consensus       188 ~idPG~AFGTG~H~TT~lcL--e~Le~~-~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lN-  243 (327)
                      .+.++.+|++++|..+...+  +++++. ++++++|||+||                    ||+++.+++.|+++++.. 
T Consensus       120 ~l~~y~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~  199 (328)
T d1nw3a_         120 KLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFR  199 (328)
T ss_dssp             GGGCSCSSSTTCCCCCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHH
T ss_pred             HhccccCCCCCchhhhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence            36789999999986544433  345444 578899999999                    999999999999886643 


Q ss_pred             ------CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--HHHHHHHHHHhhccCCC
Q 041970          244 ------NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--NPLLQLADHIVSYAKPG  315 (327)
Q Consensus       244 ------gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~vL~~L~p~i~~~LkpG  315 (327)
                            |+...++++.  .+|...       .+..+           ....+|+|++|-..  ..+...+.++.+.||||
T Consensus       200 ~~~~~~g~~~~~i~~~--~gd~~~-------~~~~~-----------~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpG  259 (328)
T d1nw3a_         200 KWMKWYGKKHAEYTLE--RGDFLS-------EEWRE-----------RIANTSVIFVNNFAFGPEVDHQLKERFANMKEG  259 (328)
T ss_dssp             HHHHHHTCCCCCEEEE--ECCTTS-------HHHHH-----------HHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTT
T ss_pred             HHhhhccccCCceEEE--ECcccc-------ccccc-----------ccCcceEEEEcceecchHHHHHHHHHHHhCCCC
Confidence                  3333456664  567530       00000           01236899997543  34566677888999999


Q ss_pred             cEEEEe
Q 041970          316 AVVGIS  321 (327)
Q Consensus       316 G~LIlS  321 (327)
                      |++|..
T Consensus       260 g~iv~~  265 (328)
T d1nw3a_         260 GRIVSS  265 (328)
T ss_dssp             CEEEES
T ss_pred             cEEEEe
Confidence            999875

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=6.8e-08  Score=87.47  Aligned_cols=95  Identities=22%  Similarity=0.285  Sum_probs=62.8

Q ss_pred             HHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCC--cEEEEecCCCCCCCCcc
Q 041970          206 CLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPK--KMKLHLVPDRTFPSSMN  265 (327)
Q Consensus       206 cLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~--~v~v~~~~~d~~~~~~~  265 (327)
                      +++.|..  +++++|||+||                  +|+++.+++.|++|+..++....  +..+.  ..+..     
T Consensus        48 l~~~l~~--~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~--~~~~~-----  118 (292)
T d1xvaa_          48 LLGLLRQ--HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIE--EANWL-----  118 (292)
T ss_dssp             HHHHHHH--TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEE--ECCGG-----
T ss_pred             HHHHhhh--cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeee--ecccc-----
Confidence            4444443  35679999999                  99999999999999988775421  11111  12210     


Q ss_pred             ccccchhhhcccccccCCCCCCCeeEEEEc--CCh---------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          266 ERVDGIVEYLSSHKIRGISETEEYDVVIAN--ILL---------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvAN--Ila---------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                          .+.        ......++||+|++-  .+.         .-+..++..+.++|||||+||++
T Consensus       119 ----~~~--------~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         119 ----TLD--------KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             ----GHH--------HHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ----ccc--------cccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence                000        012235689999973  221         34667899999999999999985

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.45  E-value=1.2e-07  Score=84.45  Aligned_cols=82  Identities=13%  Similarity=0.256  Sum_probs=62.1

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .+.++||||||                    +|+ |.+++.|+++++..++. +++++.  .+|.+        +     
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~rv~~~--~~D~~--------~-----  141 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS-DRVDVV--EGDFF--------E-----  141 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT-TTEEEE--ECCTT--------S-----
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcc-cchhhc--cccch--------h-----
Confidence            34579999999                    787 77899999999999987 678874  46653        0     


Q ss_pred             cccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEee
Q 041970          275 LSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                             .  ...+||+|+++-..     +....++..+++.|||||+|++.-
T Consensus       142 -------~--~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         142 -------P--LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             -------C--CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -------h--cccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence                   1  13579999987443     234578899999999999988764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.43  E-value=9.6e-08  Score=79.26  Aligned_cols=100  Identities=5%  Similarity=-0.017  Sum_probs=64.0

Q ss_pred             hhhHHHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCC----------CcEE
Q 041970          200 HATTKLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGP----------KKMK  251 (327)
Q Consensus       200 H~TT~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~----------~~v~  251 (327)
                      ||.-+.|+..|.  +.+|.+|||+||                  +|+++.+++.|+++++..+...          ..+.
T Consensus         6 ~~~~~~~~~~l~--~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T d1pjza_           6 NKDLQQYWSSLN--VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE   83 (201)
T ss_dssp             THHHHHHHHHHC--CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred             HHHHHHHHHHcC--CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence            444444444443  678999999999                  9999999999999985543210          0111


Q ss_pred             EEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEee
Q 041970          252 LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       252 v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      +.  .++..         ++.          ......||+|++.-...     ....++..+.++|||||++++..
T Consensus        84 ~~--~~d~~---------~l~----------~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          84 IW--CGDFF---------ALT----------ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             EE--EECCS---------SST----------HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ee--ccccc---------ccc----------cccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            21  12211         000          00135799999875432     34578889999999999987753

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.42  E-value=2.2e-07  Score=80.89  Aligned_cols=88  Identities=14%  Similarity=0.239  Sum_probs=60.8

Q ss_pred             HHHHHHHHhhhcCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcc
Q 041970          204 KLCLLLLRSLIKGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMN  265 (327)
Q Consensus       204 ~lcLe~Le~~~~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~  265 (327)
                      +.+++.+.++.+ +++|||+||                  ||+++.+++.|+++..      +.+.+.  .++.      
T Consensus         9 ~~~~~~~~~~~~-~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~------~~~~~~--~~~~------   73 (225)
T d2p7ia1           9 PFMVRAFTPFFR-PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK------DGITYI--HSRF------   73 (225)
T ss_dssp             HHHHHHHGGGCC-SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC------SCEEEE--ESCG------
T ss_pred             HHHHHHhhhhCC-CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc------cccccc--cccc------
Confidence            355666777655 669999999                  9999999999987742      234543  3443      


Q ss_pred             ccccchhhhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHh-hccCCCcEEEEe
Q 041970          266 ERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIV-SYAKPGAVVGIS  321 (327)
Q Consensus       266 g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~-~~LkpGG~LIlS  321 (327)
                         +            ....+++||+|+++-..+.   ...++..+. ++|+|||.++++
T Consensus        74 ---~------------~~~~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          74 ---E------------DAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             ---G------------GCCCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ---c------------ccccccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence               1            1123578999999865432   234556666 789999999875

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=2.1e-07  Score=85.70  Aligned_cols=90  Identities=11%  Similarity=0.133  Sum_probs=67.1

Q ss_pred             HHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970          206 CLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSM  264 (327)
Q Consensus       206 cLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~  264 (327)
                      -.++|.+.  +.+|++|||+||                   +|.++.+ ..|++|++.|++. +++.+.  .++..    
T Consensus        21 y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~-~~v~~~--~~~~~----   92 (316)
T d1oria_          21 YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLD-HVVTII--KGKVE----   92 (316)
T ss_dssp             HHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCT-TTEEEE--ESCTT----
T ss_pred             HHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCc-cccceE--eccHH----
Confidence            34555432  457999999999                   9999865 7888999999997 678774  35542    


Q ss_pred             cccccchhhhcccccccCCCCCCCeeEEEEcCChH------HHHHHHHHHhhccCCCcEEE
Q 041970          265 NERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------PLLQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------vL~~L~p~i~~~LkpGG~LI  319 (327)
                           ++          .. +.++||+|+++++..      .+..++..+.++|||||.+|
T Consensus        93 -----~~----------~~-~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          93 -----EV----------EL-PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             -----TC----------CC-SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             -----Hc----------cc-ccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence                 11          11 257899999997642      46778889999999999987

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.38  E-value=2e-07  Score=79.89  Aligned_cols=106  Identities=16%  Similarity=0.204  Sum_probs=77.4

Q ss_pred             CCCchhhHHHHHHHHHhhhc---CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970          196 GTGEHATTKLCLLLLRSLIK---GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLH  253 (327)
Q Consensus       196 GTG~H~TT~lcLe~Le~~~~---~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~  253 (327)
                      |-++-|||...-|.|=..+.   .|.+|||++|                   ||+|+.|++.+++|++.++.. +++++.
T Consensus        18 ~~~~RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~-~~~~i~   96 (182)
T d2fhpa1          18 GDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP-EKFEVR   96 (182)
T ss_dssp             CCSSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEE
T ss_pred             CCCcCcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcc-cccccc
Confidence            44679999988888766643   6889999999                   999999999999999999986 577775


Q ss_pred             ecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--HHHHHHHHHHh--hccCCCcEEEE
Q 041970          254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--NPLLQLADHIV--SYAKPGAVVGI  320 (327)
Q Consensus       254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~vL~~L~p~i~--~~LkpGG~LIl  320 (327)
                        .+|+.         ..+..       ......+||+|+++++.  +.+..++..+.  ..|+++|.+|+
T Consensus        97 --~~D~~---------~~l~~-------~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~  149 (182)
T d2fhpa1          97 --KMDAN---------RALEQ-------FYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVC  149 (182)
T ss_dssp             --ESCHH---------HHHHH-------HHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             --cccch---------hhhhh-------hcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEE
Confidence              45542         11110       00125689999999974  23445555554  47999999886

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.8e-07  Score=80.56  Aligned_cols=105  Identities=19%  Similarity=0.279  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970          202 TTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       202 TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~  260 (327)
                      .+-..|..|-+.. ..++||++||                     +|+|+...+.|++|++..|+. ++++++  .|+..
T Consensus        46 ~~g~lL~~L~~~~-~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~-~~i~~~--~Gda~  121 (219)
T d2avda1          46 EQAQLLANLARLI-QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-HKIDLR--LKPAL  121 (219)
T ss_dssp             HHHHHHHHHHHHT-TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-TTEEEE--ESCHH
T ss_pred             HHHHHHHHHHHcc-CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc-ceEEEE--Eeehh
Confidence            3445555665554 3579999999                     999999999999999999998 688876  46642


Q ss_pred             CCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                           +...++..         ....++||+|+.+.-.+........+.++|+|||.+++..++
T Consensus       122 -----e~l~~~~~---------~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l  171 (219)
T d2avda1         122 -----ETLDELLA---------AGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVL  171 (219)
T ss_dssp             -----HHHHHHHH---------TTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             -----hcchhhhh---------hcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence                 11111110         112568999999998888888888999999999999998876

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.38  E-value=3.1e-07  Score=83.55  Aligned_cols=90  Identities=13%  Similarity=0.116  Sum_probs=65.5

Q ss_pred             HHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhc--CCCCCcEEEEecCCCCC
Q 041970          204 KLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALN--NIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       204 ~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lN--gv~~~~v~v~~~~~d~~  260 (327)
                      .+.+.+|+  +++|++|||+||                     +|+++..++.|++|++.-  +.. +++.+.  .+|..
T Consensus        86 s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~-~nv~~~--~~d~~  160 (264)
T d1i9ga_          86 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP-DNWRLV--VSDLA  160 (264)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC-TTEEEE--CSCGG
T ss_pred             HHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCC-ceEEEE--ecccc
Confidence            34444444  689999999999                     999999999999999853  332 456664  45542


Q ss_pred             CCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                               +          ..+ +++.||.|+.++...  ...++.+.+.|||||++++
T Consensus       161 ---------~----------~~~-~~~~fDaV~ldlp~P--~~~l~~~~~~LkpGG~lv~  198 (264)
T d1i9ga_         161 ---------D----------SEL-PDGSVDRAVLDMLAP--WEVLDAVSRLLVAGGVLMV  198 (264)
T ss_dssp             ---------G----------CCC-CTTCEEEEEEESSCG--GGGHHHHHHHEEEEEEEEE
T ss_pred             ---------c----------ccc-cCCCcceEEEecCCH--HHHHHHHHhccCCCCEEEE
Confidence                     0          012 267899999987543  2467889999999999875

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.37  E-value=2.2e-07  Score=84.44  Aligned_cols=89  Identities=15%  Similarity=0.224  Sum_probs=67.5

Q ss_pred             HHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCC
Q 041970          205 LCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSS  263 (327)
Q Consensus       205 lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~  263 (327)
                      +.+.+|+  +++|++|||+||                     +|+++..++.|++|++.+++. +++.+.  .+|..   
T Consensus        94 ~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~-~~v~~~--~~d~~---  165 (266)
T d1o54a_          94 FIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-ERVTIK--VRDIS---  165 (266)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-GGEEEE--CCCGG---
T ss_pred             HHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc-cCcEEE--ecccc---
Confidence            4444444  689999999999                     999999999999999999986 567664  34431   


Q ss_pred             ccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          264 MNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       264 ~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                                       ..+ ....||.|+..+...  ...++.+.+.|||||+|++-
T Consensus       166 -----------------~~~-~~~~~D~V~~d~p~p--~~~l~~~~~~LKpGG~lv~~  203 (266)
T d1o54a_         166 -----------------EGF-DEKDVDALFLDVPDP--WNYIDKCWEALKGGGRFATV  203 (266)
T ss_dssp             -----------------GCC-SCCSEEEEEECCSCG--GGTHHHHHHHEEEEEEEEEE
T ss_pred             -----------------ccc-cccceeeeEecCCCH--HHHHHHHHhhcCCCCEEEEE
Confidence                             011 256799999887543  34678999999999999864

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.6e-07  Score=81.02  Aligned_cols=87  Identities=14%  Similarity=0.208  Sum_probs=60.0

Q ss_pred             hhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          212 SLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       212 ~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      ....+|++||||||                   ||+||.+++.|+++++..+.   ++.+.  .++.         ....
T Consensus        49 ~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~---~~~~~--~~~~---------~~~~  114 (229)
T d1zx0a1          49 AASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH---KVIPL--KGLW---------EDVA  114 (229)
T ss_dssp             HHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS---EEEEE--ESCH---------HHHG
T ss_pred             hhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc---ccccc--cccc---------cccc
Confidence            34467889999999                   99999999999999877653   24432  2332         1111


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCC--------hHHHHHHHHHHhhccCCCcEEEEe
Q 041970          273 EYLSSHKIRGISETEEYDVVIANIL--------LNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIl--------a~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                              ..+ +.++||+|+.+..        .......+..+.++|||||+|++.
T Consensus       115 --------~~~-~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         115 --------PTL-PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             --------GGS-CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             --------ccc-ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence                    012 3678999986532        123455778899999999999864

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=7.2e-07  Score=79.84  Aligned_cols=41  Identities=24%  Similarity=0.421  Sum_probs=33.8

Q ss_pred             CCCeeEEEEcCChHH-------HHHHHHHHhhccCCCcEEEEeeccCC
Q 041970          286 TEEYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGILSE  326 (327)
Q Consensus       286 ~~~fDlVvANIla~v-------L~~L~p~i~~~LkpGG~LIlSGIl~~  326 (327)
                      .++||+|++.-..+.       +..++..+.++|||||+||+.|.+.+
T Consensus       155 ~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~  202 (263)
T d2g72a1         155 PLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE  202 (263)
T ss_dssp             CSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC
T ss_pred             cCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Confidence            457999999765433       46678899999999999999998764

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.33  E-value=6.5e-07  Score=82.62  Aligned_cols=93  Identities=17%  Similarity=0.182  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      |..-.++|.+.  ..+|++||||||                   +|.++. ++.|+++++.|+.. +++.+.  .++.. 
T Consensus        23 ~~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~~~~~-~~i~~i--~~~~~-   97 (328)
T d1g6q1_          23 TLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI-IEMAKELVELNGFS-DKITLL--RGKLE-   97 (328)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTH-HHHHHHHHHHTTCT-TTEEEE--ESCTT-
T ss_pred             HHHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHH-HHHHHHHHHHhCcc-ccceEE--Eeehh-
Confidence            33444455432  357999999999                   999985 58899999999987 567764  34431 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------HHHHHHHHHHhhccCCCcEEE
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------NPLLQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------~vL~~L~p~i~~~LkpGG~LI  319 (327)
                              ++          .. +.++||+|+++++.      ..+..++....++|||||.+|
T Consensus        98 --------~l----------~~-~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_          98 --------DV----------HL-PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             --------TS----------CC-SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             --------hc----------cC-cccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence                    11          11 25789999999764      345667778889999999886

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.33  E-value=6.7e-07  Score=76.05  Aligned_cols=87  Identities=10%  Similarity=0.081  Sum_probs=61.3

Q ss_pred             HHHHHHHhhhcCCCeeeeeee--------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccc
Q 041970          205 LCLLLLRSLIKGGELFLDYGT--------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDG  270 (327)
Q Consensus       205 lcLe~Le~~~~~g~~VLDvGc--------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~  270 (327)
                      -.++.+..+ .++.+||||||              ||+++.+++.|+++    +     +.+.  .+|..         +
T Consensus        26 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~~~~~~giD~s~~~~~~a~~~----~-----~~~~--~~d~~---------~   84 (208)
T d1vlma_          26 SELQAVKCL-LPEGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKR----G-----VFVL--KGTAE---------N   84 (208)
T ss_dssp             HHHHHHHHH-CCSSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHT----T-----CEEE--ECBTT---------B
T ss_pred             HHHHHHHhh-CCCCeEEEECCCCcccccccceEEEEeCChhhccccccc----c-----cccc--ccccc---------c
Confidence            345556554 45668999999              99999999998874    2     2333  24431         1


Q ss_pred             hhhhcccccccCCCCCCCeeEEEEcCChHH---HHHHHHHHhhccCCCcEEEEeec
Q 041970          271 IVEYLSSHKIRGISETEEYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       271 l~~~~~~~~~~~~~~~~~fDlVvANIla~v---L~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      +          .. .+++||+|+++-..+.   ...++..+.+.|+|||++++...
T Consensus        85 l----------~~-~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_          85 L----------PL-KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             C----------CS-CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             c----------cc-ccccccccccccccccccccccchhhhhhcCCCCceEEEEec
Confidence            1          11 3578999999865432   45678999999999999998754

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.31  E-value=1e-06  Score=76.98  Aligned_cols=86  Identities=16%  Similarity=0.083  Sum_probs=61.7

Q ss_pred             hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      +++|++|||+||                    +|++|.+++.|+++++.++    ++.+.  .++..         ....
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~----ni~~i--~~d~~---------~~~~  118 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN----NIIPL--LFDAS---------KPWK  118 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS----SEEEE--CSCTT---------CGGG
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC----CceEE--Eeecc---------Cccc
Confidence            578899999999                    9999999999999998764    24443  34431         0000


Q ss_pred             hcccccccCCCCCCCeeEEEEcCC-hHHHHHHHHHHhhccCCCcEEEEee
Q 041970          274 YLSSHKIRGISETEEYDVVIANIL-LNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIl-a~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                              .......+|+|+.++. ......++..+.+.|||||+++++-
T Consensus       119 --------~~~~~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         119 --------YSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             --------TTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------cccccceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence                    0011356889988864 4556677899999999999998863

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=5.6e-07  Score=80.88  Aligned_cols=82  Identities=20%  Similarity=0.233  Sum_probs=57.1

Q ss_pred             HHHHhh-hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          208 LLLRSL-IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       208 e~Le~~-~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      ..|.+. ..++.+|||+||                    +|+++.+++.|+++.       .++.+.  .+|..      
T Consensus        75 ~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-------~~~~~~--~~d~~------  139 (268)
T d1p91a_          75 AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------PQVTFC--VASSH------  139 (268)
T ss_dssp             HHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------TTSEEE--ECCTT------
T ss_pred             HHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-------ccccce--eeehh------
Confidence            334333 356789999999                    899999999998752       124443  34541      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEee
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                         ++          ++ .++.||+|+++-....    +.++.+.|||||+|+++.
T Consensus       140 ---~l----------~~-~~~sfD~v~~~~~~~~----~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         140 ---RL----------PF-SDTSMDAIIRIYAPCK----AEELARVVKPGGWVITAT  177 (268)
T ss_dssp             ---SC----------SB-CTTCEEEEEEESCCCC----HHHHHHHEEEEEEEEEEE
T ss_pred             ---hc----------cC-CCCCEEEEeecCCHHH----HHHHHHHhCCCcEEEEEe
Confidence               11          12 3678999999865444    357889999999999874

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.28  E-value=6.5e-07  Score=80.01  Aligned_cols=91  Identities=14%  Similarity=0.138  Sum_probs=63.8

Q ss_pred             HHHHhhh-cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCcccc
Q 041970          208 LLLRSLI-KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNER  267 (327)
Q Consensus       208 e~Le~~~-~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~  267 (327)
                      ++|+.+. .++.+|||+||                   ||+++.+++.|+++++..    ..+++.  .+++.       
T Consensus        84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~----~~~~~~--~~d~~-------  150 (254)
T d1xtpa_          84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM----PVGKFI--LASME-------  150 (254)
T ss_dssp             HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS----SEEEEE--ESCGG-------
T ss_pred             HHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc----ccceeE--Ecccc-------
Confidence            3444443 34579999999                   999999999999886432    234554  24431       


Q ss_pred             ccchhhhcccccccCCCCCCCeeEEEEcCChH-----HHHHHHHHHhhccCCCcEEEEeecc
Q 041970          268 VDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       268 ~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                        ++          .. +.++||+|+++-..+     .+..++..+.+.|+|||+++++-..
T Consensus       151 --~~----------~~-~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~  199 (254)
T d1xtpa_         151 --TA----------TL-PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC  199 (254)
T ss_dssp             --GC----------CC-CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             --cc----------cc-CCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecC
Confidence              11          11 257899999986543     3567889999999999999987543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.1e-06  Score=76.50  Aligned_cols=99  Identities=15%  Similarity=0.071  Sum_probs=66.4

Q ss_pred             HHHHHHHhhh--cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCC---------------CCCc
Q 041970          205 LCLLLLRSLI--KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNI---------------GPKK  249 (327)
Q Consensus       205 lcLe~Le~~~--~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv---------------~~~~  249 (327)
                      ...+++.+++  .+|.+|||+||                  ||+++.||+.|++++.....               ...+
T Consensus        32 ~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (229)
T d2bzga1          32 LLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN  111 (229)
T ss_dssp             HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence            3345565553  46789999999                  99999999999987654321               0123


Q ss_pred             EEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh-----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          250 MKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       250 v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla-----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      +++.  .+|.+         ++          .....+.||+|+.....     +.....+..+.++|||||++++..+.
T Consensus       112 v~~~--~~d~~---------~l----------~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         112 ISLY--CCSIF---------DL----------PRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             EEEE--ESCGG---------GG----------GGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEEE--Ecchh---------hc----------cccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            3332  23331         11          01135789999976432     45567889999999999999887654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.25  E-value=1.7e-07  Score=83.12  Aligned_cols=93  Identities=13%  Similarity=0.267  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee--------------------------ecCCHHHHHHHHHHHHhcCCC---CCcEEEE
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT--------------------------VDIDPQVIKSAHQNAALNNIG---PKKMKLH  253 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc--------------------------VDIDp~AV~~A~eNa~lNgv~---~~~v~v~  253 (327)
                      ...+|++|...+++|++||||||                          +|+++..++.|++|+..++..   ..++.+.
T Consensus        67 ~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~  146 (223)
T d1r18a_          67 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV  146 (223)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE
Confidence            34555555445789999999999                          899999999999997654321   1246554


Q ss_pred             ecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          254 LVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       254 ~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                        .+|..    .                .....++||.|+.+-....   +-..+.+.|||||+|++
T Consensus       147 --~~d~~----~----------------~~~~~~~fD~Iiv~~a~~~---~p~~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         147 --EGDGR----K----------------GYPPNAPYNAIHVGAAAPD---TPTELINQLASGGRLIV  188 (223)
T ss_dssp             --ESCGG----G----------------CCGGGCSEEEEEECSCBSS---CCHHHHHTEEEEEEEEE
T ss_pred             --ecccc----c----------------ccccccceeeEEEEeechh---chHHHHHhcCCCcEEEE
Confidence              45642    0                1123578999998865432   22456789999999986

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2e-06  Score=78.55  Aligned_cols=95  Identities=20%  Similarity=0.180  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhh--hcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCC
Q 041970          203 TKLCLLLLRSL--IKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFP  261 (327)
Q Consensus       203 T~lcLe~Le~~--~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~  261 (327)
                      |..--++|.+.  ..+|++|||+||                   +|.++.+.. |+++++.|+.. +++.+.  .++.. 
T Consensus        20 ~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~-~~i~~~--~~~~~-   94 (311)
T d2fyta1          20 TESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLE-DTITLI--KGKIE-   94 (311)
T ss_dssp             HHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCT-TTEEEE--ESCTT-
T ss_pred             HHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCC-ccceEE--EeeHH-
Confidence            34444566553  357899999999                   999999864 67777788776 677764  35541 


Q ss_pred             CCccccccchhhhcccccccCCCCCCCeeEEEEcCCh------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          262 SSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       262 ~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                              ++          .. +.++||+|+++++.      ..+..+.....++|||||+++.+
T Consensus        95 --------~l----------~~-~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~  141 (311)
T d2fyta1          95 --------EV----------HL-PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD  141 (311)
T ss_dssp             --------TS----------CC-SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             --------Hh----------cC-ccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence                    11          11 25789999998764      34566777778899999998754

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.1e-06  Score=81.84  Aligned_cols=93  Identities=15%  Similarity=0.193  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcC----------CCCCcEE
Q 041970          203 TKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNN----------IGPKKMK  251 (327)
Q Consensus       203 T~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNg----------v~~~~v~  251 (327)
                      ..+.+.+|.  +++|++|||+||                     +|+++.+++.|++|++..+          .. +++.
T Consensus        87 ~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~-~nv~  163 (324)
T d2b25a1          87 INMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP-DNVD  163 (324)
T ss_dssp             HHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC-CCEE
T ss_pred             HHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccc-ccee
Confidence            345555555  689999999999                     9999999999999998532          22 4566


Q ss_pred             EEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          252 LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       252 v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      +.  .+|..     +..            ..+ ....||.|+.++....  ..++.+.+.|||||+|++
T Consensus       164 ~~--~~di~-----~~~------------~~~-~~~~fD~V~LD~p~P~--~~l~~~~~~LKpGG~lv~  210 (324)
T d2b25a1         164 FI--HKDIS-----GAT------------EDI-KSLTFDAVALDMLNPH--VTLPVFYPHLKHGGVCAV  210 (324)
T ss_dssp             EE--ESCTT-----CCC--------------------EEEEEECSSSTT--TTHHHHGGGEEEEEEEEE
T ss_pred             EE--ecchh-----hcc------------ccc-CCCCcceEeecCcCHH--HHHHHHHHhccCCCEEEE
Confidence            64  35542     000            011 2467999998876432  357899999999999875

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.18  E-value=1.9e-06  Score=77.02  Aligned_cols=83  Identities=19%  Similarity=0.268  Sum_probs=62.3

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhh
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEY  274 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~  274 (327)
                      .+.++||||||                    +|+ |..++.|+++++..++. +++.+.  .+|.+              
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~-~ri~~~--~~d~~--------------  141 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA-DRVTVA--EGDFF--------------  141 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEE--ECCTT--------------
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCc-ceeeee--eeecc--------------
Confidence            34578999999                    898 88899999999999987 678764  35542              


Q ss_pred             cccccccCCCCCCCeeEEEEc-CCh----HHHHHHHHHHhhccCCCcEEEEeec
Q 041970          275 LSSHKIRGISETEEYDVVIAN-ILL----NPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       275 ~~~~~~~~~~~~~~fDlVvAN-Ila----~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                            ...  ...||+|++. ++.    +....++..+.+.|||||+|++...
T Consensus       142 ------~~~--p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         142 ------KPL--PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             ------SCC--SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ------ccc--cccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence                  011  3469998875 443    3356788999999999999987654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.14  E-value=5.9e-07  Score=78.34  Aligned_cols=54  Identities=31%  Similarity=0.491  Sum_probs=38.4

Q ss_pred             CCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          216 GGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       216 ~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .|++|||+||                   ||+|+.|++.|++|++.       +.+.  .+|..                
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~-------~~~~--~~D~~----------------  102 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGG-------VNFM--VADVS----------------  102 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTT-------SEEE--ECCGG----------------
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcccc-------ccEE--EEehh----------------
Confidence            5788888888                   99999999999999642       3332  34431                


Q ss_pred             cccccCCCCCCCeeEEEEcCChHHH
Q 041970          277 SHKIRGISETEEYDVVIANILLNPL  301 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~vL  301 (327)
                           .+  .++||+|++|++....
T Consensus       103 -----~l--~~~fD~Vi~NPPfg~~  120 (197)
T d1ne2a_         103 -----EI--SGKYDTWIMNPPFGSV  120 (197)
T ss_dssp             -----GC--CCCEEEEEECCCC---
T ss_pred             -----hc--CCcceEEEeCcccchh
Confidence                 12  5789999999986543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.12  E-value=2e-06  Score=76.24  Aligned_cols=85  Identities=18%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             hcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchh
Q 041970          214 IKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIV  272 (327)
Q Consensus       214 ~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~  272 (327)
                      +++|++|||+||                     +|+++.+++.|++|++.++..   ..+   ..|..      ..... 
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~---~~i---~~d~~------~~~~~-  137 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNI---VPI---LGDAT------KPEEY-  137 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTE---EEE---ECCTT------CGGGG-
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCc---eEE---EEECC------Ccccc-
Confidence            578999999999                     999999999999998766431   222   23321      00100 


Q ss_pred             hhcccccccCCCCCCCeeEEEEcCCh-HHHHHHHHHHhhccCCCcEEEEe
Q 041970          273 EYLSSHKIRGISETEEYDVVIANILL-NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       273 ~~~~~~~~~~~~~~~~fDlVvANIla-~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                               .. ....+|+|++++.. +....++..+.+.|||||+++++
T Consensus       138 ---------~~-~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         138 ---------RA-LVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             ---------TT-TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------cc-cccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence                     11 24679999999864 45566889999999999999986

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.12  E-value=2.8e-06  Score=75.31  Aligned_cols=103  Identities=17%  Similarity=0.308  Sum_probs=75.3

Q ss_pred             HHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCC
Q 041970          205 LCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSS  263 (327)
Q Consensus       205 lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~  263 (327)
                      -.|..|-+.. ..++||++||                     +|+|+...+.|++|++..|+. ++++++  .|++.   
T Consensus        49 ~~L~~L~~~~-~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~-~~i~~~--~g~a~---  121 (227)
T d1susa1          49 QFLSMLLKLI-NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-HKIDFR--EGPAL---  121 (227)
T ss_dssp             HHHHHHHHHH-TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-GGEEEE--ESCHH---
T ss_pred             HHHHHHHHhc-CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc-cceeee--ehHHH---
Confidence            3444444443 3568888888                     999999999999999999997 788876  35542   


Q ss_pred             ccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          264 MNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       264 ~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                        ....++..        .-...++||+|+.+.-..-.....+.+.++|+|||.+|+..++
T Consensus       122 --~~L~~l~~--------~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl  172 (227)
T d1susa1         122 --PVLDEMIK--------DEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTL  172 (227)
T ss_dssp             --HHHHHHHH--------CGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred             --HHHHHHHh--------ccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence              11111110        0001468999999988877888888889999999999998775

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=4e-06  Score=80.43  Aligned_cols=104  Identities=17%  Similarity=0.153  Sum_probs=67.3

Q ss_pred             chhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcC-------CCCCcEE
Q 041970          199 EHATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNN-------IGPKKMK  251 (327)
Q Consensus       199 ~H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNg-------v~~~~v~  251 (327)
                      .++.++-.++.+.  +++|++|||+||                    ||+++.+++.|++|++..+       .....+.
T Consensus       201 ~~~~i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~  278 (406)
T d1u2za_         201 LPNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE  278 (406)
T ss_dssp             CHHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred             CHHHHHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccce
Confidence            3445555444443  689999999999                    9999999999999987643       2212233


Q ss_pred             EEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCC--hHHHHHHHHHHhhccCCCcEEEEee
Q 041970          252 LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       252 v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl--a~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      +.. .++..   .....+.           .   -..+|+|++|-.  ...+...+.++.+.|||||++|.+-
T Consensus       279 ~~~-~~~f~---~~~~~d~-----------~---~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         279 FSL-KKSFV---DNNRVAE-----------L---IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             EEE-SSCST---TCHHHHH-----------H---GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             eee-eechh---hcccccc-----------c---cccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence            322 22221   0000000           0   235899998733  3566777889999999999998763

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.99  E-value=5.4e-06  Score=73.32  Aligned_cols=85  Identities=16%  Similarity=0.163  Sum_probs=56.1

Q ss_pred             hcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          214 IKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       214 ~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      +++|.+|||+||                    ||++|.+++.|+++++.++.    +...  .++..      ....   
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~n----i~~i--~~d~~------~~~~---  136 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAEREN----IIPI--LGDAN------KPQE---  136 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTT----EEEE--ECCTT------CGGG---
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcc----cceE--EEeec------cCcc---
Confidence            578889999999                    99999999999999877642    2221  23331      0000   


Q ss_pred             hcccccccCCCCCCCeeEEEEcCC-hHHHHHHHHHHhhccCCCcEEEEe
Q 041970          274 YLSSHKIRGISETEEYDVVIANIL-LNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIl-a~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                              .......+|++++.+. .+-...++..+.+.|||||+++++
T Consensus       137 --------~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~  177 (230)
T d1g8sa_         137 --------YANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             --------GTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------cccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEE
Confidence                    0101234555655543 344566788999999999999886

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.92  E-value=1.5e-05  Score=67.60  Aligned_cols=105  Identities=15%  Similarity=0.175  Sum_probs=69.9

Q ss_pred             CCchhhHHHHHHHHHhhh---cCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEe
Q 041970          197 TGEHATTKLCLLLLRSLI---KGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHL  254 (327)
Q Consensus       197 TG~H~TT~lcLe~Le~~~---~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~  254 (327)
                      .++-|||...-|.|=..+   ..|.+|||+.|                   ||.|+.|++..++|++..++......+. 
T Consensus        21 ~~~RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~-   99 (183)
T d2ifta1          21 EGLRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVI-   99 (183)
T ss_dssp             -------CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEE-
T ss_pred             CCcCcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccc-
Confidence            357899998888777665   36789999988                   9999999999999999988864455543 


Q ss_pred             cCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh--HHHHHHHHHHh--hccCCCcEEEE
Q 041970          255 VPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL--NPLLQLADHIV--SYAKPGAVVGI  320 (327)
Q Consensus       255 ~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla--~vL~~L~p~i~--~~LkpGG~LIl  320 (327)
                       ..|..         +..        .......+||+|+++++.  +....++..+.  ..|+++|.+|+
T Consensus       100 -~~d~~---------~~l--------~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liii  151 (183)
T d2ifta1         100 -NQSSL---------DFL--------KQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYV  151 (183)
T ss_dssp             -CSCHH---------HHT--------TSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             -ccccc---------ccc--------cccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEE
Confidence             23321         111        011124579999999975  34555666554  47999999886

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.5e-05  Score=70.75  Aligned_cols=82  Identities=12%  Similarity=0.033  Sum_probs=51.1

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---HHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---PLL  302 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---vL~  302 (327)
                      ||+++.+++.|+++++....- ..+.+.....+.         ++....     ........+||+|+|.-..+   -..
T Consensus        76 vD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~-----~~~~~~~~~fD~I~~~~~l~~~~d~~  140 (280)
T d1jqea_          76 VEPSAEQIAKYKELVAKISNL-ENVKFAWHKETS---------SEYQSR-----MLEKKELQKWDFIHMIQMLYYVKDIP  140 (280)
T ss_dssp             ECCCHHHHHHHHHHHTTCCSC-TTEEEEEECSCH---------HHHHHH-----HTTSSSCCCEEEEEEESCGGGCSCHH
T ss_pred             EeCcHHHHHHHHHHHhhcccc-ccccccchhhhh---------hhhcch-----hcccCCCCceeEEEEccceecCCCHH
Confidence            799999999999997654321 234443222221         111000     00111367899999975432   246


Q ss_pred             HHHHHHhhccCCCcEEEEee
Q 041970          303 QLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       303 ~L~p~i~~~LkpGG~LIlSG  322 (327)
                      .++..+.++|+|||.|++..
T Consensus       141 ~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         141 ATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             HHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHhhCCCCCEEEEEE
Confidence            78899999999999988753

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.87  E-value=1.1e-05  Score=70.00  Aligned_cols=103  Identities=16%  Similarity=0.175  Sum_probs=66.7

Q ss_pred             eeEEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCc
Q 041970          185 TNIILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSM  264 (327)
Q Consensus       185 ~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~  264 (327)
                      .+|.||=|  +|+|.+-..     +.++  .++..++  | +|+++.++..|.++++.+++.  ++.+.  .+|+.    
T Consensus        30 ~PlvLeIG--cG~G~~~~~-----lA~~--~p~~~~i--G-iD~~~~~i~~a~~~~~~~~l~--Nv~~~--~~Da~----   89 (204)
T d2fcaa1          30 NPIHIEVG--TGKGQFISG-----MAKQ--NPDINYI--G-IELFKSVIVTAVQKVKDSEAQ--NVKLL--NIDAD----   89 (204)
T ss_dssp             CCEEEEEC--CTTSHHHHH-----HHHH--CTTSEEE--E-ECSCHHHHHHHHHHHHHSCCS--SEEEE--CCCGG----
T ss_pred             CceEEEEE--ecCcHHHHH-----HHHh--CCCCcEE--E-eecchHHHHHHHHHHHHHhcc--Cchhc--ccchh----
Confidence            35666655  666655211     1111  2344443  2 799999999999999999986  46664  56652    


Q ss_pred             cccccchhhhcccccccCCCCCCCeeEEEEcCChH-----------HHHHHHHHHhhccCCCcEEEEe
Q 041970          265 NERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----------PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       265 ~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----------vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                           .+.+        .+ +.+.+|.|..|-...           +-..++..+.+.|||||.|.+.
T Consensus        90 -----~l~~--------~~-~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1          90 -----TLTD--------VF-EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             -----GHHH--------HC-CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             -----hhhc--------cc-CchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence                 1111        12 367899998885421           1146889999999999998774

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.85  E-value=2.6e-05  Score=71.17  Aligned_cols=68  Identities=24%  Similarity=0.287  Sum_probs=48.4

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------  299 (327)
                      +|+|+.+++.|+.|+.+++...   .+.  .++.+        .             .....+||+||+|++..      
T Consensus       152 ~di~~~~~~~a~~~~~~~~~~~---~~~--~~d~~--------~-------------~~~~~~fD~vi~NPPy~~~~~~~  205 (328)
T d2f8la1         152 VDVDDLLISLALVGADLQRQKM---TLL--HQDGL--------A-------------NLLVDPVDVVISDLPVGYYPDDE  205 (328)
T ss_dssp             EESCHHHHHHHHHHHHHHTCCC---EEE--ESCTT--------S-------------CCCCCCEEEEEEECCCSEESCHH
T ss_pred             ecccHHHHHHHHHHHHHhhhhh---hhh--ccccc--------c-------------ccccccccccccCCCCCCCccch
Confidence            7999999999999999998752   222  23432        0             11256899999998741      


Q ss_pred             ---------------HHHHHHHHHhhccCCCcEEE
Q 041970          300 ---------------PLLQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       300 ---------------vL~~L~p~i~~~LkpGG~LI  319 (327)
                                     .-..++....+.|+|||+++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~  240 (328)
T d2f8la1         206 NAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF  240 (328)
T ss_dssp             HHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred             hhhhcchhcccCcchHHHHHHHHHHHhcCCCCceE
Confidence                           12235777889999999754

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.82  E-value=3.7e-05  Score=66.97  Aligned_cols=82  Identities=12%  Similarity=0.246  Sum_probs=56.4

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHH--
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQ--  303 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~--  303 (327)
                      +|+++...+.|++|++..|+. ++++++  .|+..         +.+..+.    ... ...+||+|+..--.+-...  
T Consensus        87 id~~~~~~~~a~~~~~~~gl~-~~i~l~--~Gd~~---------e~l~~l~----~~~-~~~~~D~ifiD~~~~~~~~~~  149 (214)
T d2cl5a1          87 MEMNPDYAAITQQMLNFAGLQ-DKVTIL--NGASQ---------DLIPQLK----KKY-DVDTLDMVFLDHWKDRYLPDT  149 (214)
T ss_dssp             EESCHHHHHHHHHHHHHHTCG-GGEEEE--ESCHH---------HHGGGHH----HHS-CCCCEEEEEECSCGGGHHHHH
T ss_pred             EeccHHHHHHHHHHHHHcCCC-ccceee--ecccc---------ccccchh----hcc-cccccceeeecccccccccHH
Confidence            999999999999999999997 788886  45542         1111000    001 2467999998865443332  


Q ss_pred             HHHHHhhccCCCcEEEEeecc
Q 041970          304 LADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       304 L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .+....++|+|||++++-.++
T Consensus       150 ~l~~~~~lLkpGGvIv~Ddvl  170 (214)
T d2cl5a1         150 LLLEKCGLLRKGTVLLADNVI  170 (214)
T ss_dssp             HHHHHTTCEEEEEEEEESCCC
T ss_pred             HHHHHhCccCCCcEEEEeCcC
Confidence            244556789999999887765

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=0.00014  Score=66.84  Aligned_cols=116  Identities=15%  Similarity=0.158  Sum_probs=74.2

Q ss_pred             ceeEEEccCcccCCCchhhHHHHHHHHHhhhc--CCCeeeeeee------------------ecCCHHHHHHHHHHHHhc
Q 041970          184 ATNIILNPGLAFGTGEHATTKLCLLLLRSLIK--GGELFLDYGT------------------VDIDPQVIKSAHQNAALN  243 (327)
Q Consensus       184 ~~~I~idPG~AFGTG~H~TT~lcLe~Le~~~~--~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lN  243 (327)
                      .+.+.+.|+-.|=+ +.......++.+.+++.  ++++|||+-|                  +|+++.||+.|++|++.|
T Consensus       179 g~~~~i~p~sFfQ~-N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n  257 (358)
T d1uwva2         179 GLRLTFSPRDFIQV-NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLN  257 (358)
T ss_dssp             TEEEECCSSSCCCS-BHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CEEEEECCchhhcc-chhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhc
Confidence            46688888765554 44555555555555544  6789999999                  999999999999999999


Q ss_pred             CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEEe
Q 041970          244 NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       244 gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      |+.  ++++.  .++..         +.+.       .......+||+||.|+...=+...+..+.+ ++|.-.+++|
T Consensus       258 ~i~--n~~~~--~~~~~---------~~~~-------~~~~~~~~~d~vilDPPR~G~~~~~~~l~~-~~~~~ivYVS  314 (358)
T d1uwva2         258 GLQ--NVTFY--HENLE---------EDVT-------KQPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVS  314 (358)
T ss_dssp             TCC--SEEEE--ECCTT---------SCCS-------SSGGGTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEE
T ss_pred             ccc--cceee--ecchh---------hhhh-------hhhhhhccCceEEeCCCCccHHHHHHHHHH-cCCCEEEEEe
Confidence            996  36654  34431         0000       001124679999999875323334444443 2455555555

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.72  E-value=7.3e-05  Score=64.69  Aligned_cols=74  Identities=15%  Similarity=0.097  Sum_probs=54.0

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------  299 (327)
                      +|+++..+..|.++++.+++.  ++.+.  .+|+.         ++.+        .+ +...+|.|..|..-.      
T Consensus        61 id~~~~~v~~a~~~~~~~~l~--Ni~~~--~~da~---------~l~~--------~~-~~~~~~~i~i~fPdPw~K~~h  118 (204)
T d1yzha1          61 IDIQKSVLSYALDKVLEVGVP--NIKLL--WVDGS---------DLTD--------YF-EDGEIDRLYLNFSDPWPKKRH  118 (204)
T ss_dssp             EESCHHHHHHHHHHHHHHCCS--SEEEE--ECCSS---------CGGG--------TS-CTTCCSEEEEESCCCCCSGGG
T ss_pred             EeccHHHHHHHHHhhhhhccc--cceee--ecCHH---------HHhh--------hc-cCCceehhcccccccccchhh
Confidence            899999999999999999986  46664  45542         1110        12 356899999886421      


Q ss_pred             -----HHHHHHHHHhhccCCCcEEEEe
Q 041970          300 -----PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       300 -----vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                           +-..++..+.+.|||||.|+++
T Consensus       119 ~krRl~~~~~l~~~~~~LkpgG~l~i~  145 (204)
T d1yzha1         119 EKRRLTYKTFLDTFKRILPENGEIHFK  145 (204)
T ss_dssp             GGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             hhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence                 1256788999999999999874

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.43  E-value=6.4e-05  Score=64.12  Aligned_cols=35  Identities=14%  Similarity=0.357  Sum_probs=29.0

Q ss_pred             CCCeeEEEE-cCCh----HHHHHHHHHHhhccCCCcEEEE
Q 041970          286 TEEYDVVIA-NILL----NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       286 ~~~fDlVvA-NIla----~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      .++||+|+| |.+.    ..-.+++..+.+.|+|||+|++
T Consensus       130 ~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l  169 (193)
T d1af7a2         130 PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  169 (193)
T ss_dssp             CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            468999998 6543    5567899999999999999876

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.32  E-value=0.00023  Score=67.36  Aligned_cols=71  Identities=24%  Similarity=0.346  Sum_probs=50.3

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH------
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN------  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~------  299 (327)
                      +|+|+.+...|+.|+.++|+......+.  .+|.+        .             .....+||+|++|++..      
T Consensus       205 ~E~~~~~~~la~~n~~l~g~~~~~~~i~--~~d~l--------~-------------~~~~~~fD~Ii~NPPfg~~~~~~  261 (425)
T d2okca1         205 VDNTPLVVTLASMNLYLHGIGTDRSPIV--CEDSL--------E-------------KEPSTLVDVILANPPFGTRPAGS  261 (425)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSSCCSEE--ECCTT--------T-------------SCCSSCEEEEEECCCSSCCCTTC
T ss_pred             hhccHHHHHHHHhhhhhcCCccccceee--cCchh--------h-------------hhcccccceEEecCCCCCCcccc
Confidence            8999999999999999999864433332  23432        0             11256899999999742      


Q ss_pred             --------------HHHHHHHHHhhccCCCcEEE
Q 041970          300 --------------PLLQLADHIVSYAKPGAVVG  319 (327)
Q Consensus       300 --------------vL~~L~p~i~~~LkpGG~LI  319 (327)
                                    .-...+..+.+.|++||++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~  295 (425)
T d2okca1         262 VDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA  295 (425)
T ss_dssp             CCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred             chhhhhhcccccccHHHHHHHHHHHhcCCCCeEE
Confidence                          12346677888999999654

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.17  E-value=0.00038  Score=62.66  Aligned_cols=100  Identities=17%  Similarity=0.151  Sum_probs=65.6

Q ss_pred             hhhHHHHHHHHHhhhcCCCeeeeeee-------------------ecCCHHHHHHHHHHHHhcC--------CCCCcEEE
Q 041970          200 HATTKLCLLLLRSLIKGGELFLDYGT-------------------VDIDPQVIKSAHQNAALNN--------IGPKKMKL  252 (327)
Q Consensus       200 H~TT~lcLe~Le~~~~~g~~VLDvGc-------------------VDIDp~AV~~A~eNa~lNg--------v~~~~v~v  252 (327)
                      |.-+.++...........++||-+|.                   |||||..++.|++-...++        ....|+++
T Consensus        56 ~~Yhe~l~~~~l~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i  135 (276)
T d1mjfa_          56 RSYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKL  135 (276)
T ss_dssp             HHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEE
T ss_pred             hHHHHHhhcchhhcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceE
Confidence            33344444432223345678999998                   8999999999998654332        22367887


Q ss_pred             EecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH-----HH--HHHHHHHhhccCCCcEEEEe
Q 041970          253 HLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN-----PL--LQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       253 ~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~-----vL--~~L~p~i~~~LkpGG~LIlS  321 (327)
                      +.  +|+.         ..+.           ..++||+|+..+...     .|  .+....++++|+|||.+++-
T Consensus       136 ~~--~Da~---------~~l~-----------~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         136 TI--GDGF---------EFIK-----------NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             EE--SCHH---------HHHH-----------HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EE--ChHH---------HHHh-----------ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            63  5531         1111           256899999987532     11  45788899999999999873

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.00047  Score=58.97  Aligned_cols=102  Identities=20%  Similarity=0.318  Sum_probs=65.9

Q ss_pred             EEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          187 IILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       187 I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      +.||.  +||||.|  |+..|+   ++  ++.+|+   ++|.|+.|++.|+++++..+   +++.+.  .++..      
T Consensus        26 ~~lD~--t~G~Ggh--s~~il~---~~--~~~~vi---~~D~d~~~l~~a~~~l~~~~---~r~~~~--~~~f~------   82 (192)
T d1m6ya2          26 IILDC--TVGEGGH--SRAILE---HC--PGCRII---GIDVDSEVLRIAEEKLKEFS---DRVSLF--KVSYR------   82 (192)
T ss_dssp             EEEET--TCTTSHH--HHHHHH---HC--TTCEEE---EEESCHHHHHHHHHHTGGGT---TTEEEE--ECCGG------
T ss_pred             EEEEe--cCCCcHH--HHHHHh---cC--CCCeEE---EeechHHHHHHHHHhhcccc---ccccch--hHHHh------
Confidence            56775  5899998  444333   33  233442   28999999999999987764   456654  34431      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEEEcCC------------hHHHHHHHHHHhhccCCCcEEEE
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVIANIL------------LNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl------------a~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      ....+..        .. ..+++|.|+.++-            ...+...+....+.|+|||++++
T Consensus        83 ~~~~~~~--------~~-~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~i  139 (192)
T d1m6ya2          83 EADFLLK--------TL-GIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVV  139 (192)
T ss_dssp             GHHHHHH--------HT-TCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEE
T ss_pred             hHHHHHH--------Hc-CCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeee
Confidence            0111111        11 1468999998852            24566788889999999999875

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.01  E-value=0.00083  Score=61.54  Aligned_cols=85  Identities=25%  Similarity=0.367  Sum_probs=59.6

Q ss_pred             cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHh-cC--CCCCcEEEEecCCCCCCCCccccccch
Q 041970          215 KGGELFLDYGT--------------------VDIDPQVIKSAHQNAAL-NN--IGPKKMKLHLVPDRTFPSSMNERVDGI  271 (327)
Q Consensus       215 ~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~l-Ng--v~~~~v~v~~~~~d~~~~~~~g~~~~l  271 (327)
                      ...++||.+|.                    |||||..|+.|+++... |+  .+..|+++.  .+|+.         +.
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~--~~Da~---------~~  144 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLV--IDDAR---------AY  144 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEE--ESCHH---------HH
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEE--EchHH---------HH
Confidence            34579999998                    99999999999998642 22  234578875  35542         22


Q ss_pred             hhhcccccccCCCCCCCeeEEEEcCC--------hHHH--HHHHHHHhhccCCCcEEEE
Q 041970          272 VEYLSSHKIRGISETEEYDVVIANIL--------LNPL--LQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       272 ~~~~~~~~~~~~~~~~~fDlVvANIl--------a~vL--~~L~p~i~~~LkpGG~LIl  320 (327)
                      +.        .  ...+||+|+....        +..|  .++...++++|+|||.+++
T Consensus       145 l~--------~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~  193 (312)
T d1uira_         145 LE--------R--TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM  193 (312)
T ss_dssp             HH--------H--CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred             hh--------h--cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence            21        1  2568999998762        1112  4678899999999999987

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.93  E-value=0.0011  Score=62.31  Aligned_cols=116  Identities=17%  Similarity=0.313  Sum_probs=69.5

Q ss_pred             EEEcCCCC-CceeEEEccCcccCCCchhhHHHH-HHHHHhhhcCCCeeeeeee--------------------ecCCHHH
Q 041970          175 WIVPEWNV-QATNIILNPGLAFGTGEHATTKLC-LLLLRSLIKGGELFLDYGT--------------------VDIDPQV  232 (327)
Q Consensus       175 ~I~P~W~~-~~~~I~idPG~AFGTG~H~TT~lc-Le~Le~~~~~g~~VLDvGc--------------------VDIDp~A  232 (327)
                      +++|..++ ....+.-+|-|.|.       |.. +..+. . .++.+|||..|                    +|+|+.|
T Consensus        11 i~vp~~~~~~~~~vFYNp~q~~N-------RDlsvl~~~-~-~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A   81 (375)
T d2dula1          11 ILIPKAESIYDSPVFYNPRMALN-------RDIVVVLLN-I-LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDA   81 (375)
T ss_dssp             EEEC--------CCCCCGGGHHH-------HHHHHHHHH-H-HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHH
T ss_pred             EEecCCCCCCCCCcccCHHHhhh-------hHHHHHHHH-H-hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHH
Confidence            34565542 22346667777664       321 22222 2 25789999999                    8999999


Q ss_pred             HHHHHHHHHhcCCCCC-------------cEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH
Q 041970          233 IKSAHQNAALNNIGPK-------------KMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN  299 (327)
Q Consensus       233 V~~A~eNa~lNgv~~~-------------~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~  299 (327)
                      ++.+++|+++|++...             .+.+  ...|+         ..++          ......||+|.-++...
T Consensus        82 ~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~--~~~Da---------~~~~----------~~~~~~fDvIDiDPfGs  140 (375)
T d2dula1          82 YELMKRNVMLNFDGELRESKGRAILKGEKTIVI--NHDDA---------NRLM----------AERHRYFHFIDLDPFGS  140 (375)
T ss_dssp             HHHHHHHHHHHCCSCCEECSSEEEEESSSEEEE--EESCH---------HHHH----------HHSTTCEEEEEECCSSC
T ss_pred             HHHHHHHHHhcCccccccccccccccccceeEe--ehhhh---------hhhh----------HhhcCcCCcccCCCCCC
Confidence            9999999999998631             1111  11121         0111          01246799999998754


Q ss_pred             HHHHHHHHHhhccCCCcEEEEe
Q 041970          300 PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       300 vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      + ..+++...+.++.||.|.+.
T Consensus       141 ~-~pfldsAi~a~~~~Gll~vT  161 (375)
T d2dula1         141 P-MEFLDTALRSAKRRGILGVT  161 (375)
T ss_dssp             C-HHHHHHHHHHEEEEEEEEEE
T ss_pred             c-HHHHHHHHHHhccCCEEEEE
Confidence            4 33666777778999988764

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.65  E-value=0.0031  Score=57.46  Aligned_cols=94  Identities=18%  Similarity=0.254  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970          202 TTKLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       202 TT~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~  260 (327)
                      ...+...+|.  .++|++|||+++                     +|+++.-++..++|+++.|+. + +.+.  ..|..
T Consensus       104 aS~l~~~~l~--~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~-i~~~--~~d~~  177 (313)
T d1ixka_         104 SSMYPPVALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-N-VILF--HSSSL  177 (313)
T ss_dssp             HHHHHHHHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-S-EEEE--SSCGG
T ss_pred             cccchhhccc--CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-c-cccc--ccccc
Confidence            3566666664  578999999988                     999999999999999999986 2 4332  23321


Q ss_pred             CCCccccccchhhhcccccccCCCCCCCeeEEEEcCC-------------------------hHHHHHHHHHHhhccCCC
Q 041970          261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL-------------------------LNPLLQLADHIVSYAKPG  315 (327)
Q Consensus       261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl-------------------------a~vL~~L~p~i~~~LkpG  315 (327)
                               .+         ..  ...+||.|+....                         +..-.+|+....+.||||
T Consensus       178 ---------~~---------~~--~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~g  237 (313)
T d1ixka_         178 ---------HI---------GE--LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG  237 (313)
T ss_dssp             ---------GG---------GG--GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             ---------cc---------cc--ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCC
Confidence                     00         01  1568999998753                         123356778899999999


Q ss_pred             cEEEEe
Q 041970          316 AVVGIS  321 (327)
Q Consensus       316 G~LIlS  321 (327)
                      |+++.|
T Consensus       238 G~lVYs  243 (313)
T d1ixka_         238 GILVYS  243 (313)
T ss_dssp             EEEEEE
T ss_pred             cEEEEe
Confidence            999987

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.57  E-value=0.0022  Score=58.30  Aligned_cols=84  Identities=17%  Similarity=0.177  Sum_probs=58.6

Q ss_pred             CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcC--CCCCcEEEEecCCCCCCCCccccccchhh
Q 041970          216 GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNN--IGPKKMKLHLVPDRTFPSSMNERVDGIVE  273 (327)
Q Consensus       216 ~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNg--v~~~~v~v~~~~~d~~~~~~~g~~~~l~~  273 (327)
                      ..++||=+|.                    |||||..++.|++....|.  .+..|++++.  +|+.         +.+.
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~--~Da~---------~~l~  157 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI--ANGA---------EYVR  157 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE--SCHH---------HHGG
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh--hhHH---------HHHh
Confidence            3468888888                    9999999999999776543  3446788763  5542         1221


Q ss_pred             hcccccccCCCCCCCeeEEEEcCChH---H---H--HHHHHHHhhccCCCcEEEE
Q 041970          274 YLSSHKIRGISETEEYDVVIANILLN---P---L--LQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       274 ~~~~~~~~~~~~~~~fDlVvANIla~---v---L--~~L~p~i~~~LkpGG~LIl  320 (327)
                              .  ..++||+|+......   +   |  .+....+.++|+|||.++.
T Consensus       158 --------~--~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~  202 (295)
T d1inla_         158 --------K--FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA  202 (295)
T ss_dssp             --------G--CSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred             --------c--CCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEE
Confidence                    1  256899999986532   1   1  4677889999999999887

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0025  Score=57.30  Aligned_cols=96  Identities=20%  Similarity=0.256  Sum_probs=68.6

Q ss_pred             hhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970          201 ATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       201 ~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~  260 (327)
                      +..++...+|.  .++|++|||+++                    +|+++.-++..++|+++.|+..  +.+.  ..+..
T Consensus        89 ~sS~l~~~~L~--~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~--~~~~--~~~~~  162 (284)
T d1sqga2          89 ASAQGCMTWLA--PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA--TVKQ--GDGRY  162 (284)
T ss_dssp             HHHHTHHHHHC--CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC--EEEE--CCTTC
T ss_pred             ccccccccccC--ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc--eeee--ccccc
Confidence            44566666664  567889999987                    8999999999999999999863  3332  12210


Q ss_pred             CCCccccccchhhhcccccccCCCCCCCeeEEEEcCC-------------------------hHHHHHHHHHHhhccCCC
Q 041970          261 PSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANIL-------------------------LNPLLQLADHIVSYAKPG  315 (327)
Q Consensus       261 ~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIl-------------------------a~vL~~L~p~i~~~LkpG  315 (327)
                             ...            ....+.||.|+....                         ...-.+|+....+.||||
T Consensus       163 -------~~~------------~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~g  223 (284)
T d1sqga2         163 -------PSQ------------WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG  223 (284)
T ss_dssp             -------THH------------HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred             -------cch------------hcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCC
Confidence                   000            112468999999863                         123356788899999999


Q ss_pred             cEEEEe
Q 041970          316 AVVGIS  321 (327)
Q Consensus       316 G~LIlS  321 (327)
                      |+|+.|
T Consensus       224 G~lvYs  229 (284)
T d1sqga2         224 GTLVYA  229 (284)
T ss_dssp             EEEEEE
T ss_pred             ceEEEe
Confidence            999987

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.40  E-value=0.0014  Score=58.82  Aligned_cols=75  Identities=17%  Similarity=0.216  Sum_probs=52.3

Q ss_pred             ecCCHHHHHHHHHHHHhcC--CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH----
Q 041970          226 VDIDPQVIKSAHQNAALNN--IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN----  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNg--v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~----  299 (327)
                      |||||..++.|++....|.  .+..|++++.  +|+.         ..+.        .  ...+||+|+..+...    
T Consensus       105 VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~--~D~~---------~~l~--------~--~~~~yDvIi~D~~~p~~~~  163 (274)
T d1iy9a_         105 VDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV--DDGF---------MHIA--------K--SENQYDVIMVDSTEPVGPA  163 (274)
T ss_dssp             EESCHHHHHHHHHHCHHHHTTTTSTTEEEEE--SCSH---------HHHH--------T--CCSCEEEEEESCSSCCSCC
T ss_pred             ecCCHHHHHHHHHhChhhcccccCCCeEEEe--chHH---------HHHh--------h--cCCCCCEEEEcCCCCCCcc
Confidence            8999999999999865542  3345787753  5542         1221        1  256899999996431    


Q ss_pred             ---HHHHHHHHHhhccCCCcEEEEe
Q 041970          300 ---PLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       300 ---vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                         .-.+....+.++|+|||.++.-
T Consensus       164 ~~L~t~eFy~~~~~~L~~~Gv~v~q  188 (274)
T d1iy9a_         164 VNLFTKGFYAGIAKALKEDGIFVAQ  188 (274)
T ss_dssp             CCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhccHHHHHHHHhhcCCCceEEEe
Confidence               1246778899999999998874

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0045  Score=55.81  Aligned_cols=75  Identities=19%  Similarity=0.266  Sum_probs=50.8

Q ss_pred             ecCCHHHHHHHHHHHHhc--CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH----
Q 041970          226 VDIDPQVIKSAHQNAALN--NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN----  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lN--gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~----  299 (327)
                      |||||..++.|++-...|  .....|++++.  +|+.         +.++        .  ..++||+|+......    
T Consensus       108 vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~--~Da~---------~~l~--------~--~~~~yDvIi~D~~~p~~~~  166 (285)
T d2o07a1         108 CEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV--GDGF---------EFMK--------Q--NQDAFDVIITDSSDPMGPA  166 (285)
T ss_dssp             EESCHHHHHHHHHHCHHHHGGGGCTTEEEEE--SCHH---------HHHH--------T--CSSCEEEEEEECC------
T ss_pred             ccCCHHHHHHHHhhchhhccccCCCCceEEE--ccHH---------HHHh--------c--CCCCCCEEEEcCCCCCCcc
Confidence            899999999999876543  23346788763  5531         2221        1  256899999997531    


Q ss_pred             -HH--HHHHHHHhhccCCCcEEEEe
Q 041970          300 -PL--LQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       300 -vL--~~L~p~i~~~LkpGG~LIlS  321 (327)
                       .|  .+....++++|+|||.+++-
T Consensus       167 ~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         167 ESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             -----CHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccHHHHHHHHHhcCCCCeEEEe
Confidence             11  24677899999999999874

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.015  Score=52.08  Aligned_cols=46  Identities=22%  Similarity=0.198  Sum_probs=35.7

Q ss_pred             HHHHHHHHhhhcCCCeeeeeee---------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEE
Q 041970          204 KLCLLLLRSLIKGGELFLDYGT---------------------VDIDPQVIKSAHQNAALNNIGPKKMKLH  253 (327)
Q Consensus       204 ~lcLe~Le~~~~~g~~VLDvGc---------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~  253 (327)
                      .+...+|+  .++|++|||+++                     +|+++.-++..++|+++.|+.  .+.+.
T Consensus        84 ~l~~~~L~--~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~--~~~~~  150 (293)
T d2b9ea1          84 CLPAMLLD--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS--CCELA  150 (293)
T ss_dssp             GHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEE
T ss_pred             cccccccC--CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc--ceeee
Confidence            44445553  467888888888                     999999999999999999986  35553

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.84  E-value=0.0041  Score=56.97  Aligned_cols=115  Identities=16%  Similarity=0.145  Sum_probs=69.6

Q ss_pred             eEEEccCcccCCCc-hhhHHHHHHHHHhhhcCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcC
Q 041970          186 NIILNPGLAFGTGE-HATTKLCLLLLRSLIKGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNN  244 (327)
Q Consensus       186 ~I~idPG~AFGTG~-H~TT~lcLe~Le~~~~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNg  244 (327)
                      .+.||--+-+-+-. +.-+.+....-.......++||-+|-                    |||||..|+.|++....|+
T Consensus        75 ~L~LDg~~q~~e~de~~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~  154 (312)
T d2b2ca1          75 VLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS  154 (312)
T ss_dssp             EEEETTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTS
T ss_pred             EEEECCceeeecccHHHHHHHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhc
Confidence            45566555554443 22233332221112234578998888                    9999999999999865543


Q ss_pred             --CCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHH-----H--HHHHHHHhhccCCC
Q 041970          245 --IGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNP-----L--LQLADHIVSYAKPG  315 (327)
Q Consensus       245 --v~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~v-----L--~~L~p~i~~~LkpG  315 (327)
                        .+..|++++  .+|..         +.+.        .  ..++||+|+.+.....     |  .+....+.++|+||
T Consensus       155 ~~~~dprv~i~--i~Da~---------~~l~--------~--~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~  213 (312)
T d2b2ca1         155 CGFSHPKLDLF--CGDGF---------EFLK--------N--HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKED  213 (312)
T ss_dssp             GGGGCTTEEEE--CSCHH---------HHHH--------H--CTTCEEEEEECCC-------------HHHHHHHHEEEE
T ss_pred             cccCCCCeEEE--EchHH---------HHHH--------h--CCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCC
Confidence              334678775  35531         2221        1  2568999999875321     1  34677899999999


Q ss_pred             cEEEEe
Q 041970          316 AVVGIS  321 (327)
Q Consensus       316 G~LIlS  321 (327)
                      |.++.-
T Consensus       214 Gi~v~q  219 (312)
T d2b2ca1         214 GILSSQ  219 (312)
T ss_dssp             EEEEEE
T ss_pred             cEEEEe
Confidence            999874

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.77  E-value=0.00028  Score=59.51  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=25.1

Q ss_pred             CCCeeEEEEcCChH--------------------------------HHHHHHHHHhhccCCCcEEEE
Q 041970          286 TEEYDVVIANILLN--------------------------------PLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       286 ~~~fDlVvANIla~--------------------------------vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      ..+||+|++|+...                                ....++....+.|+|||++++
T Consensus        76 ~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~  142 (223)
T d2ih2a1          76 GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  142 (223)
T ss_dssp             SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence            56899999997620                                123455677889999998643

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.012  Score=56.81  Aligned_cols=74  Identities=18%  Similarity=0.237  Sum_probs=47.7

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcE---EEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH---
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKM---KLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN---  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v---~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~---  299 (327)
                      +|+++.+.+.|+.|+.+++......   .+.  .++.+      . .            ......+||+|++|++..   
T Consensus       212 ~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~--~~~~l------~-~------------d~~~~~kfD~Ii~NPPfg~~~  270 (524)
T d2ar0a1         212 LELVPGTRRLALMNCLLHDIEGNLDHGGAIR--LGNTL------G-S------------DGENLPKAHIVATNPPFGSAA  270 (524)
T ss_dssp             EESCHHHHHHHHHHHHTTTCCCBGGGTBSEE--ESCTT------S-H------------HHHTSCCEEEEEECCCCTTCS
T ss_pred             hccCHHHHHHHHHHHHhhcccccccccchhh--hhhhh------h-h------------cccccccceeEEecCCccccc
Confidence            7999999999999999998753100   010  12211      0 0            001246899999999742   


Q ss_pred             --------------HHHHHHHHHhhccCCCcEEEE
Q 041970          300 --------------PLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       300 --------------vL~~L~p~i~~~LkpGG~LIl  320 (327)
                                    .-..++..+.+.|++||++.+
T Consensus       271 ~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ai  305 (524)
T d2ar0a1         271 GTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV  305 (524)
T ss_dssp             SCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccchhhhccccccccHHHHHHHHHhccccCcEEE
Confidence                          122367778899999997543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.014  Score=50.04  Aligned_cols=79  Identities=16%  Similarity=0.185  Sum_probs=57.7

Q ss_pred             CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          216 GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       216 ~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      ++++++|+||                    +|-...-+...++=++.-++.  ++++.  .++.         .      
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~--nv~v~--~~R~---------E------  125 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE--NIEPV--QSRV---------E------  125 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS--SEEEE--ECCT---------T------
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc--ceeee--ccch---------h------
Confidence            4568999999                    999999888888877776775  36654  2332         1      


Q ss_pred             ccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          276 SSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                            ......+||+|+|--++. +..++.-...++++||.+++
T Consensus       126 ------~~~~~~~fD~V~sRA~~~-~~~ll~~~~~~l~~~g~~~~  163 (207)
T d1jsxa_         126 ------EFPSEPPFDGVISRAFAS-LNDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             ------TSCCCSCEEEEECSCSSS-HHHHHHHHTTSEEEEEEEEE
T ss_pred             ------hhccccccceehhhhhcC-HHHHHHHHHHhcCCCcEEEE
Confidence                  112256899999988754 44577888999999998875

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.35  E-value=0.0036  Score=56.61  Aligned_cols=76  Identities=18%  Similarity=0.243  Sum_probs=51.8

Q ss_pred             ecCCHHHHHHHHHHHHhc--CCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChH----
Q 041970          226 VDIDPQVIKSAHQNAALN--NIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLN----  299 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lN--gv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~----  299 (327)
                      |||||..++.|++....|  ..+..|+++..  +|..         +.+.        .. ..++||+|+......    
T Consensus       110 VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~--~Da~---------~~l~--------~~-~~~~yDvIi~D~~dp~~~~  169 (290)
T d1xj5a_         110 CEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI--GDGV---------AFLK--------NA-AEGSYDAVIVDSSDPIGPA  169 (290)
T ss_dssp             EESCHHHHHHHHHHCHHHHGGGGSTTEEEEE--SCHH---------HHHH--------TS-CTTCEEEEEECCCCTTSGG
T ss_pred             ecCCHHHHHHHHHhchhhhccccCCCcEEEE--ccHH---------HHHh--------hc-cccCccEEEEcCCCCCCcc
Confidence            999999999999965443  23446788753  4531         1111        11 245899999987531    


Q ss_pred             -HH--HHHHHHHhhccCCCcEEEEe
Q 041970          300 -PL--LQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       300 -vL--~~L~p~i~~~LkpGG~LIlS  321 (327)
                       .|  .+....++++|+|||.++.-
T Consensus       170 ~~L~t~eF~~~~~~~L~~~Gi~v~q  194 (290)
T d1xj5a_         170 KELFEKPFFQSVARALRPGGVVCTQ  194 (290)
T ss_dssp             GGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhCCHHHHHHHHHhcCCCcEEEEe
Confidence             11  45788899999999999873

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=94.06  E-value=0.096  Score=45.30  Aligned_cols=68  Identities=12%  Similarity=0.232  Sum_probs=45.0

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      +++++||+|||                  ||+|+..++..+++...+    .++++.  .+|.+         ++     
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~----~n~~i~--~~D~l---------~~-----   79 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH----DNFQVL--NKDIL---------QF-----   79 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC----CSEEEE--CCCGG---------GC-----
T ss_pred             CCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcc----cchhhh--hhhhh---------hc-----
Confidence            56788888888                  999999999998876433    356664  67764         10     


Q ss_pred             cccccCCCCCCCeeEEEEcCChHHHHHHHHHH
Q 041970          277 SHKIRGISETEEYDVVIANILLNPLLQLADHI  308 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i  308 (327)
                           .+. ......||+|+..++-..++-.+
T Consensus        80 -----~~~-~~~~~~vv~NLPYnIss~il~~l  105 (235)
T d1qama_          80 -----KFP-KNQSYKIFGNIPYNISTDIIRKI  105 (235)
T ss_dssp             -----CCC-SSCCCEEEEECCGGGHHHHHHHH
T ss_pred             -----ccc-ccccceeeeeehhhhhHHHHHHH
Confidence                 111 23345789999876655544443

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=93.79  E-value=0.065  Score=46.57  Aligned_cols=96  Identities=16%  Similarity=0.178  Sum_probs=61.5

Q ss_pred             cCCCchhhHHHHHHHHHhhh---cCCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEE
Q 041970          195 FGTGEHATTKLCLLLLRSLI---KGGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMK  251 (327)
Q Consensus       195 FGTG~H~TT~lcLe~Le~~~---~~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~  251 (327)
                      |..+.+..++.....+-+..   .+..+||||||                    .|. |..++       ..+.. +|++
T Consensus        57 F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~-~ri~  127 (244)
T d1fp1d2          57 FNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPPL-SGIE  127 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCC-TTEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCCC-CCeE
Confidence            66666666777666555432   23479999999                    776 44432       22222 6777


Q ss_pred             EEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEE-cCCh----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          252 LHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIA-NILL----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       252 v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvA-NIla----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      +.  .+|.+        +            .   ...+|+++. |++.    +.-..++..+++.|+|||++++...+
T Consensus       128 ~~--~gd~~--------~------------~---~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v  180 (244)
T d1fp1d2         128 HV--GGDMF--------A------------S---VPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI  180 (244)
T ss_dssp             EE--ECCTT--------T------------C---CCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             Ee--cCCcc--------c------------c---cccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence            64  56653        1            1   224687765 5554    34567899999999999988887654

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.17  Score=44.92  Aligned_cols=59  Identities=12%  Similarity=0.262  Sum_probs=41.1

Q ss_pred             ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCChHHHHHHH
Q 041970          226 VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILLNPLLQLA  305 (327)
Q Consensus       226 VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla~vL~~L~  305 (327)
                      |++|+..++..+++...+... +++++.  .+|.+                     ... ...++.||+|+...+-..++
T Consensus        49 iE~D~~l~~~L~~~~~~~~~~-~~~~~i--~~D~l---------------------~~~-~~~~~~vV~NLPY~Iss~il  103 (278)
T d1zq9a1          49 CELDPRLVAELHKRVQGTPVA-SKLQVL--VGDVL---------------------KTD-LPFFDTCVANLPYQISSPFV  103 (278)
T ss_dssp             EESCHHHHHHHHHHHTTSTTG-GGEEEE--ESCTT---------------------TSC-CCCCSEEEEECCGGGHHHHH
T ss_pred             EEEccchhHHHHHHHhhhccc-cchhhh--HHHHh---------------------hhh-hhhhhhhhcchHHHHHHHHH
Confidence            999999999999988776554 567764  46653                     011 23467899999987766655


Q ss_pred             HHHh
Q 041970          306 DHIV  309 (327)
Q Consensus       306 p~i~  309 (327)
                      -.+.
T Consensus       104 ~~~~  107 (278)
T d1zq9a1         104 FKLL  107 (278)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=92.99  E-value=0.12  Score=42.80  Aligned_cols=36  Identities=11%  Similarity=0.131  Sum_probs=26.4

Q ss_pred             CCCeeEEEEcCCh--------------HHHHHHHHHHhhccCCCcEEEEe
Q 041970          286 TEEYDVVIANILL--------------NPLLQLADHIVSYAKPGAVVGIS  321 (327)
Q Consensus       286 ~~~fDlVvANIla--------------~vL~~L~p~i~~~LkpGG~LIlS  321 (327)
                      ..++|+|+|.+..              ..+...+.-..+.|++||.+++-
T Consensus        86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K  135 (180)
T d1ej0a_          86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence            5689999999753              22334455677899999999873

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=92.80  E-value=0.099  Score=45.94  Aligned_cols=79  Identities=13%  Similarity=0.176  Sum_probs=54.7

Q ss_pred             ecCCHHHHHHH---HHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcccccccCCCCCCCeeEEEEcCCh----
Q 041970          226 VDIDPQVIKSA---HQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLSSHKIRGISETEEYDVVIANILL----  298 (327)
Q Consensus       226 VDIDp~AV~~A---~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla----  298 (327)
                      .|+|+.|++.|   ++|++..|++ +.+.+.  ..|.+.   .   ...         ........+++||+|+..    
T Consensus       120 ~D~d~~ai~~A~~~r~n~~~Agl~-~~i~i~--~~d~f~---~---~~~---------~~~~~~~~~GlIVtNPPYGERl  181 (249)
T d1o9ga_         120 KPSYLEAAQAARRLRERLTAEGGA-LPCAIR--TADVFD---P---RAL---------SAVLAGSAPDVVLTDLPYGERT  181 (249)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSS-CCEEEE--ECCTTC---G---GGH---------HHHHTTCCCSEEEEECCGGGSS
T ss_pred             cccCHHHHHHHHHHHHHHHHcCCC-ceeeee--ecchhc---c---Ccc---------hhccCCCCCCEEEeCCCccccc
Confidence            69999999999   5799999997 567764  345430   0   000         011124568999999863    


Q ss_pred             --------HHHHHHHHHHhhccCCCcEEEEee
Q 041970          299 --------NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       299 --------~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                              ..+..+...+.+.+.....+++++
T Consensus       182 ~~~~~~~~~~~~~~~~~l~~~~p~~s~~~it~  213 (249)
T d1o9ga_         182 HWEGQVPGQPVAGLLRSLASALPAHAVIAVTD  213 (249)
T ss_dssp             SSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cccccchHHHHHHHHHHHHccCCCCcEEEEeC
Confidence                    457788888999887777777765

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.44  E-value=0.22  Score=41.36  Aligned_cols=99  Identities=16%  Similarity=0.294  Sum_probs=60.8

Q ss_pred             EEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          187 IILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       187 I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      ++||  ..||.|.|  |+..|   ++    +.+|+  | +|.||.|++.|++.     . ..++.+.  +++..      
T Consensus        21 ~~vD--~T~G~GGh--s~~iL---~~----~~~vi--a-iD~D~~ai~~a~~~-----~-~~~~~~~--~~~f~------   72 (182)
T d1wg8a2          21 VYVD--ATLGGAGH--ARGIL---ER----GGRVI--G-LDQDPEAVARAKGL-----H-LPGLTVV--QGNFR------   72 (182)
T ss_dssp             EEEE--TTCTTSHH--HHHHH---HT----TCEEE--E-EESCHHHHHHHHHT-----C-CTTEEEE--ESCGG------
T ss_pred             EEEE--eCCCCcHH--HHHHh---cc----cCcEE--E-EhhhhhHHHHHhhc-----c-ccceeEe--ehHHH------
Confidence            5677  56999999  44333   32    23553  2 79999999988752     1 2456654  33321      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEEEcCCh------------HHHHHHHHHHhhccCCCcEEEEee
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGISG  322 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANIla------------~vL~~L~p~i~~~LkpGG~LIlSG  322 (327)
                      ...+.+.        .. ..+++|.|++++=.            ..+...+......|+|||.+++-.
T Consensus        73 ~~~~~l~--------~~-~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~  131 (182)
T d1wg8a2          73 HLKRHLA--------AL-GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA  131 (182)
T ss_dssp             GHHHHHH--------HT-TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHH--------Hc-CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence            1111111        11 24679999998721            344556778889999999987643

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=91.68  E-value=0.11  Score=44.68  Aligned_cols=34  Identities=12%  Similarity=0.055  Sum_probs=25.3

Q ss_pred             EEEEcCCh----HHHHHHHHHHhhccCCCcEEEEeecc
Q 041970          291 VVIANILL----NPLLQLADHIVSYAKPGAVVGISGIL  324 (327)
Q Consensus       291 lVvANIla----~vL~~L~p~i~~~LkpGG~LIlSGIl  324 (327)
                      .++.|++.    +....++..+++.|+|||++++...+
T Consensus       143 ~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~  180 (243)
T d1kyza2         143 VFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI  180 (243)
T ss_dssp             EECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred             EEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence            44567764    34567889999999999988876543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=91.43  E-value=0.27  Score=42.66  Aligned_cols=83  Identities=18%  Similarity=0.182  Sum_probs=52.9

Q ss_pred             CCCeeeeeee--------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhc
Q 041970          216 GGELFLDYGT--------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYL  275 (327)
Q Consensus       216 ~g~~VLDvGc--------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~  275 (327)
                      .+.+++|+||                    +|-...-+..-++=++.-++.  .+.+.  .+.+         +++.   
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~--n~~i~--~~R~---------E~~~---  133 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE--NTTFC--HDRA---------ETFG---  133 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS--SEEEE--ESCH---------HHHT---
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC--CcEEE--eehh---------hhcc---
Confidence            4568899999                    888877766655545555554  24443  1221         1110   


Q ss_pred             ccccccCCCCCCCeeEEEEcCChHHHHHHHHHHhhccCCCcEEEE
Q 041970          276 SSHKIRGISETEEYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       276 ~~~~~~~~~~~~~fDlVvANIla~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                           ......++||+|+|=-++. +..++.-...++++||.+++
T Consensus       134 -----~~~~~~~~~D~v~sRAva~-l~~ll~~~~~~l~~~g~~i~  172 (239)
T d1xdza_         134 -----QRKDVRESYDIVTARAVAR-LSVLSELCLPLVKKNGLFVA  172 (239)
T ss_dssp             -----TCTTTTTCEEEEEEECCSC-HHHHHHHHGGGEEEEEEEEE
T ss_pred             -----ccccccccceEEEEhhhhC-HHHHHHHHhhhcccCCEEEE
Confidence                 0001146899999988764 45578888999999998775

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=87.81  E-value=0.52  Score=40.43  Aligned_cols=36  Identities=19%  Similarity=0.192  Sum_probs=25.6

Q ss_pred             CeeEEEE-cCCh----HHHHHHHHHHhhccCCC---cEEEEeec
Q 041970          288 EYDVVIA-NILL----NPLLQLADHIVSYAKPG---AVVGISGI  323 (327)
Q Consensus       288 ~fDlVvA-NIla----~vL~~L~p~i~~~LkpG---G~LIlSGI  323 (327)
                      .+|+++. |++.    +.-.+++..+++.|+||   |++++...
T Consensus       138 ~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         138 NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             CCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence            5798875 5553    34467888999999998   66665543

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=86.21  E-value=0.052  Score=47.44  Aligned_cols=59  Identities=15%  Similarity=0.354  Sum_probs=38.6

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccccccchhhhcc
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNERVDGIVEYLS  276 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g~~~~l~~~~~  276 (327)
                      .++++||+|||                  ||+|+..++.++++...+    .++++  ..+|.+         ++     
T Consensus        28 ~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~----~n~~i--i~~D~l---------~~-----   87 (245)
T d1yuba_          28 KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLN----TRVTL--IHQDIL---------QF-----   87 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTC----SEEEE--CCSCCT---------TT-----
T ss_pred             CCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhc----cchhh--hhhhhh---------cc-----
Confidence            46678888888                  999999988876654321    34554  467764         11     


Q ss_pred             cccccCCCCCCCeeEEEEcCChH
Q 041970          277 SHKIRGISETEEYDVVIANILLN  299 (327)
Q Consensus       277 ~~~~~~~~~~~~fDlVvANIla~  299 (327)
                           .+ +..+++.||+|+..+
T Consensus        88 -----~~-~~~~~~~vv~NLPY~  104 (245)
T d1yuba_          88 -----QF-PNKQRYKIVGNIPYH  104 (245)
T ss_dssp             -----TC-CCSSEEEEEEECCSS
T ss_pred             -----cc-ccceeeeEeeeeehh
Confidence                 12 245778999998743

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=82.35  E-value=0.59  Score=40.58  Aligned_cols=40  Identities=13%  Similarity=0.381  Sum_probs=28.1

Q ss_pred             cCCCeeeeeee------------------ecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCC
Q 041970          215 KGGELFLDYGT------------------VDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTF  260 (327)
Q Consensus       215 ~~g~~VLDvGc------------------VDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~  260 (327)
                      .+++.||+|||                  ||+|+..++..++....+    +++++.  .+|.+
T Consensus        20 ~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~----~~~~ii--~~D~l   77 (252)
T d1qyra_          20 QKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLG----PKLTIY--QQDAM   77 (252)
T ss_dssp             CTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTG----GGEEEE--CSCGG
T ss_pred             CCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhc----cchhHH--hhhhh
Confidence            45778888888                  999999999887643222    356664  56753

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=81.84  E-value=0.47  Score=41.68  Aligned_cols=35  Identities=11%  Similarity=0.210  Sum_probs=26.1

Q ss_pred             CCCeeEEEEcCCh---------HHHHHHHHHHhhccCCCcEEEE
Q 041970          286 TEEYDVVIANILL---------NPLLQLADHIVSYAKPGAVVGI  320 (327)
Q Consensus       286 ~~~fDlVvANIla---------~vL~~L~p~i~~~LkpGG~LIl  320 (327)
                      .++.|+|+|.|--         .-..+++..+.+.|+|||.|++
T Consensus       130 ~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv  173 (257)
T d2p41a1         130 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV  173 (257)
T ss_dssp             CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence            5789999999842         1123566777889999998876

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=80.68  E-value=1.3  Score=37.82  Aligned_cols=102  Identities=10%  Similarity=0.068  Sum_probs=52.5

Q ss_pred             EEEccCcccCCCchhhHHHHHHHHHhhhcCCCeeeeeeeecCCHHHHHHHHHHHHhcCCCCCcEEEEecCCCCCCCCccc
Q 041970          187 IILNPGLAFGTGEHATTKLCLLLLRSLIKGGELFLDYGTVDIDPQVIKSAHQNAALNNIGPKKMKLHLVPDRTFPSSMNE  266 (327)
Q Consensus       187 I~idPG~AFGTG~H~TT~lcLe~Le~~~~~g~~VLDvGcVDIDp~AV~~A~eNa~lNgv~~~~v~v~~~~~d~~~~~~~g  266 (327)
                      ..|+=|.+.|    .+|.+..++++.+-..+ +|.   |+|||+.....+.     +.  ..++++.  .+|..      
T Consensus        83 ~ILEIGv~~G----gS~~~~a~~l~~~~~~~-kI~---giDId~~~~~~~~-----~~--~~~I~~i--~gDs~------  139 (232)
T d2bm8a1          83 TIVELGVYNG----GSLAWFRDLTKIMGIDC-QVI---GIDRDLSRCQIPA-----SD--MENITLH--QGDCS------  139 (232)
T ss_dssp             EEEEECCTTS----HHHHHHHHHHHHTTCCC-EEE---EEESCCTTCCCCG-----GG--CTTEEEE--ECCSS------
T ss_pred             EEEEECCCCc----hHHHHHHHHHHhcCCCc-eEE---ecCcChhhhhhhh-----cc--ccceeee--ecccc------
Confidence            5566677666    35555556665443222 332   2788774332211     11  2467764  46542      


Q ss_pred             cccchhhhcccccccCCCCCCCeeEEEEcC---ChHHHHHHHHHHhhccCCCcEEEEeec
Q 041970          267 RVDGIVEYLSSHKIRGISETEEYDVVIANI---LLNPLLQLADHIVSYAKPGAVVGISGI  323 (327)
Q Consensus       267 ~~~~l~~~~~~~~~~~~~~~~~fDlVvANI---la~vL~~L~p~i~~~LkpGG~LIlSGI  323 (327)
                      . .+..        ..+ ....+|+|+-.-   -..++..+  .+...|++||++|+-.+
T Consensus       140 ~-~~~~--------~~l-~~~~~dlIfID~~H~~~~v~~~~--~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         140 D-LTTF--------EHL-REMAHPLIFIDNAHANTFNIMKW--AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             C-SGGG--------GGG-SSSCSSEEEEESSCSSHHHHHHH--HHHHTCCTTCEEEECSC
T ss_pred             c-HHHH--------HHH-HhcCCCEEEEcCCcchHHHHHHH--HHhcccCcCCEEEEEcC
Confidence            0 0111        112 134578877532   23444444  35689999999987543