Citrus Sinensis ID: 041979

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAPPSKIKAEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARHDDMSCRAATTSSGETYKKPVRNSIGSDNSLERSPMHNQARNPRRGSLDSSSPSWEGKSVYTNSHGTPGRSRMRPNPRVDESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAGRAGMQSPSTQRNYHRPTNNDGVKSCCFPWGKK
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEEHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccHHHHccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maqrshvpkfgnwenednvpytmyfdkarkgrtggtminpndpqenpdllsdyeaqapappskikaepekplgqeAVRTTYERWRnkeggdlrqsrdsparhddmscraattssgetykkpvrnsigsdnslerspmhnqarnprrgsldssspswegksvytnshgtpgrsrmrpnprvdespdkgaavpkfgdwdennpssadgyTHIFNQVREERnsagragmqspstqrnyhrptnndgvksccfpwgkk
Flexible Loop (DISEMBL)
maqrshvpkfgnwenednvpYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPappskikaepekplgqeAVRTTyerwrnkeggdlrqsrdsparhddmscraattssgetykkpvrnsigsdnslerspmhnqarnprrgsldssspswegksvytnshgtpgrsrmrpnprvdespdKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSagragmqspstqrnyhrptnndgvksccfpwgkk
Low Complexity Region (SEG)
MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAPPSKIKAEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARHDDMSCRAATTSSGETYKKPVRNSIGSDNSLERSPMHNQARNPRRGSLDSSSPSWEGKSVYTNSHGTPGRSRMRPNPRVDESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAGRAGMQSPSTQRNYHRPTNNDGVKSCCFPWGKK
Disordered region (IsUnstruct)
*****************NVPYTMYF*****************************************************************************************************************************************************************************************************************************CCF*****
Disordered Region (DISOPRED)
****SHV*KFGNWENEDNVPYTMYFDK**************************************************************************************************************************************************************************ENNPSSADGYTHIF************************************CFPWGKK
Disordered Region (DISEMBL)
MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAPPSKIKAEPEKPLGQEAVRTTYERWRNK***************************GETYKKPVRNSIGSDNSL******************************************************GAAVPKFGDWDENNPSSADGYTHIFNQVREE******************HRPTNNDGVKSCCFPWGKK
Disordered Region (DISPRO)
******VPKFGNWENEDNVPYTMYFDKARKG******I*****************************************************************************************************************************************************AAVPKFGDWDENNPSSADGYTHIFNQVR******************************S********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAPPSKIKAEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARHDDMSCRAATTSSGETYKKPVRNSIGSDNSLERSPMHNQARNPRRGSLDSSSPSWEGKSVYTNSHGTPGRSRMRPNPRVDESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAGRAGMQSPSTQRNYHRPTNNDGVKSCCFPWGKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
Q8GYN5	211	RPM1-interacting protein	yes	no	0.811	0.976	0.433	2e-38
Q8S3M3	228	NOI-like protein OS=Elaei	N/A	no	0.192	0.214	0.529	4e-08

>sp|Q8GYN5|RIN4_ARATH RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/254 (43%), Positives = 140/254 (55%), Gaps = 48/254 (18%)

Query: 4   RSHVPKFGNWENEDNVPYTMYFDKARKGRT-GGTMINPNDPQENPDLLSDYEAQAPAPPS 62
           RS+VPKFGNWE E+NVPYT YFDKARK R  G  ++NPNDP+ N    SD ++QAP  P 
Sbjct: 3   RSNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYN----SDSQSQAPPHPP 58

Query: 63  KIKAEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARHDDMSCRAATTSSGETYKKPV 122
             + +PE+    + VR + E  R++E  +L+Q  D            A  SS E   K  
Sbjct: 59  SSRTKPEQ---VDTVRRSREHMRSREESELKQFGD------------AGGSSNEAANK-- 101

Query: 123 RNSIGSDNSLERSPMHNQARNPRRGSLDSSSPSWEGKSVYTNSHGTPGRSRMRP-NPRVD 181
                            Q R  +  S D+ SP      ++ NS+   G+SR +P N R D
Sbjct: 102 ----------------RQGRASQNNSYDNKSP------LHKNSYDGTGKSRPKPTNLRAD 139

Query: 182 ESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNS-AGRAGMQSPSTQRNYHRPTN 240
           ESP+K   VPKFGDWDENNPSSADGYTHIFN+VREER+S A  +G     T ++   P N
Sbjct: 140 ESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSRNPNN 199

Query: 241 NDGVKSCCFPWGKK 254
                 CCF +G K
Sbjct: 200 TSSC--CCFGFGGK 211

Essential regulator of plant defense, which plays a central role in resistance in case of infection by a pathogen. It is a common target for both type III avirulence proteins from P.syringae (AvrB, AvrRpm1 and AvrRpt2) and for the plant Resistance (R) proteins RPM1 and RPS2. In strains carrying the appropriate R gene for avirulence proteins of the pathogen, its association with avirulence proteins triggers a defense system including the hypersensitive response, which limits the spread of disease. In contrast, in plants lacking appropriate R genes, its association with avirulence proteins of the pathogen impairs the defense system and leads to the pathogen multiplication.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3M3|NOIL_ELAOL NOI-like protein OS=Elaeis oleifera PE=2 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 2/51 (3%)

Query: 1  MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMI-NPNDPQENPDLL 50
          MAQ +HVPKFGNW+ E N+ YT YF+   + +  G+ I NPNDP+ENP   
Sbjct: 1  MAQPAHVPKFGNWDGE-NISYTTYFETVHRDKGDGSKIFNPNDPEENPQAF 50

Elaeis oleifera (taxid: 80265)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
224065399	264	predicted protein [Populus trichocarpa]	0.984	0.946	0.597	2e-78
359496001	261	PREDICTED: RPM1-interacting protein 4-li	0.956	0.931	0.606	6e-75
147788436	599	hypothetical protein VITISV_002333 [Viti	0.917	0.388	0.588	3e-68
215789967	241	RIN4-like protein [Malus x domestica]	0.913	0.962	0.562	2e-67
217071664	260	unknown [Medicago truncatula]	0.980	0.957	0.550	7e-67
388500428	260	unknown [Medicago truncatula]	0.980	0.957	0.547	2e-66
215789965	239	RIN4-like protein [Malus x domestica]	0.913	0.970	0.551	5e-66
388514385	250	unknown [Lotus japonicus]	0.964	0.98	0.540	8e-66
351724035	248	RIN4d protein [Glycine max] gi|255648162	0.964	0.987	0.525	5e-62
217071162	248	unknown [Medicago truncatula]	0.960	0.983	0.513	1e-59

>gi|224065399|ref|XP_002301798.1| predicted protein [Populus trichocarpa] gi|222843524|gb|EEE81071.1| predicted protein [Populus trichocarpa]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/266 (59%), Positives = 192/266 (72%), Gaps = 16/266 (6%)

Query: 1   MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAP 60
           MAQRSHVPKFGNWE+E+NVPYT YFDKARKGRTGG MINPNDPQENPDL+SDY A   AP
Sbjct: 1   MAQRSHVPKFGNWESEENVPYTAYFDKARKGRTGGKMINPNDPQENPDLVSDYAAPDQAP 60

Query: 61  PSKIKAEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARHDDMSCRAATT-------- 112
           P + KA PE+  GQ AVR  +E   ++E  DL+Q  +SPAR+++++ RA+          
Sbjct: 61  PFRAKAPPEEAAGQGAVRQAHEHRTSREESDLKQFANSPARNENLNRRASYEPAPQRYGG 120

Query: 113 ---SSGETYKKPVRNSIGSDNSLERSPMHNQARNPRRGSLDSSSPSWEGKSVYTNSHGTP 169
              S GE +K+P R SIGS+NS+E+SP+HN AR   R S  + SPSWEGK+    SHGTP
Sbjct: 121 RGPSFGEAHKRPARYSIGSENSMEQSPIHNHARISGRNS-GAPSPSWEGKNSNDGSHGTP 179

Query: 170 GRSRMRPNPRVDESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERN--SAGRAGMQ 227
           GRSR+R  P+ DESPDKGAAVPKFGDWDENNPSSADGYTHIFN+VREE+        GM 
Sbjct: 180 GRSRLR--PKGDESPDKGAAVPKFGDWDENNPSSADGYTHIFNKVREEKQIGEGKMPGMP 237

Query: 228 SPSTQRNYHRPTNNDGVKSCCFPWGK 253
           + S+     + T +D  K CCFPWG+
Sbjct: 238 TESSNAYVRKQTPSDSAKCCCFPWGR 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496001|ref|XP_002265336.2| PREDICTED: RPM1-interacting protein 4-like [Vitis vinifera]

 Score =  286 bits (732), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 165/272 (60%), Positives = 197/272 (72%), Gaps = 29/272 (10%)

Query: 1   MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAP 60
           MAQRSHVPKFGNWE+E+NVPYT YFDKARKGRTG  +INPNDPQENPD+ SD  ++A +P
Sbjct: 1   MAQRSHVPKFGNWESEENVPYTAYFDKARKGRTGTKIINPNDPQENPDMFSDNASEARSP 60

Query: 61  PSKIKAEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARHDDMSCRAATTS------- 113
           P + +AE E+ +GQ+    T+E   +KE GD +Q  DSPAR+D++  R +T S       
Sbjct: 61  P-RTRAEQEESIGQQV---THEHRLSKEDGDQKQVTDSPARNDNLGRRPSTESTHQRQGG 116

Query: 114 ----SGETYKKPVRNSIGSDNSLERSPM--HNQARNPRRGSLDSSSPSWEGK-SVYTNSH 166
               SGETY+KP R S GS++S++RSP+  H+QAR   RG   + SPSWEGK S Y +SH
Sbjct: 117 RGMNSGETYRKP-RTSGGSEHSIDRSPLHPHHQARIAGRG---TGSPSWEGKGSSYDSSH 172

Query: 167 GTPGRSRMRPNPRVDESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAGRA-- 224
           GTPGRSRM+P  R DESPDKGAAVPKFGDWDENNPSSADGYTHIFN+VREER +      
Sbjct: 173 GTPGRSRMKPT-RGDESPDKGAAVPKFGDWDENNPSSADGYTHIFNKVREERQTGAATRV 231

Query: 225 -GMQS-PSTQRNYHRPTNNDGVKSCCFPWGKK 254
            GM S PS Q N  R  N    KSCCFPWG+K
Sbjct: 232 PGMASEPSYQTN--RKHNTSSSKSCCFPWGRK 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147788436|emb|CAN63304.1| hypothetical protein VITISV_002333 [Vitis vinifera]

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 153/260 (58%), Positives = 187/260 (71%), Gaps = 27/260 (10%)

Query: 3   QRSHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAPPS 62
           QRSHVPKFGNWE+E+NVPYT YFDKARKGRTG  +INPNDPQENPD+ SD  ++A +PP 
Sbjct: 10  QRSHVPKFGNWESEENVPYTAYFDKARKGRTGTKIINPNDPQENPDMFSDNASEARSPP- 68

Query: 63  KIKAEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARHDDMSCRAATTS--------- 113
           + +AE E+ +GQ+    T+E   +KE GD +Q  DSPAR+D++  R +T S         
Sbjct: 69  RTRAEQEESIGQQV---THEHRLSKEDGDQKQVTDSPARNDNLGRRPSTESTHQRQGGRG 125

Query: 114 --SGETYKKPVRNSIGSDNSLERSPM--HNQARNPRRGSLDSSSPSWEGK-SVYTNSHGT 168
             SGETY+KP R S GS++S++RSP+  H+QAR   RG   + SPSWEGK S Y +SHGT
Sbjct: 126 MNSGETYRKP-RTSGGSEHSIDRSPLHPHHQARIAGRG---TGSPSWEGKGSSYDSSHGT 181

Query: 169 PGRSRMRPNPRVDESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAGRA---G 225
           PGRSRM+P  R DESPDKGAAVPKFGDWDENNPSSADGYTHIFN+VREER +       G
Sbjct: 182 PGRSRMKPT-RGDESPDKGAAVPKFGDWDENNPSSADGYTHIFNKVREERQTGAATRVPG 240

Query: 226 MQS-PSTQRNYHRPTNNDGV 244
           M S PS Q N    T++  +
Sbjct: 241 MASEPSYQTNRKHNTSSSKI 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|215789967|gb|ACJ70053.1| RIN4-like protein [Malus x domestica]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 148/263 (56%), Positives = 183/263 (69%), Gaps = 31/263 (11%)

Query: 1   MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTG--GTMINPNDPQENPDLLSDYEAQAP 58
           MAQRSHVPKFGNWE E++VPYT YFDKARK RTG  G MINPNDPQENPD+LSD  A +P
Sbjct: 1   MAQRSHVPKFGNWEGEESVPYTAYFDKARKDRTGVGGKMINPNDPQENPDILSDISASSP 60

Query: 59  APPSKIKAEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARHDD------MSCRAATT 112
               K++ EPEKP+        +E+ R++E  DLR + +SPA+  +         R    
Sbjct: 61  P---KVRPEPEKPV--------HEQRRSREDNDLRFA-NSPAQRRNSGESAHQPSRGRGV 108

Query: 113 SSGETYKKPVRNSIGSDNSLERSPMHNQARNPRRGSLDSSSPSWEGKSVYTNSHGTPGRS 172
           SSGET ++P R S GS+NS+ERSP+H  AR   R      SPSWEGK+ Y  SHGTPGRS
Sbjct: 109 SSGETRRRPARPSAGSENSVERSPLHRNARVTGR-----DSPSWEGKASYETSHGTPGRS 163

Query: 173 RMRPNPRVDESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAGRA-GMQSPST 231
           R++P    DESP+KGAAVPKFG+WDEN+P+SADG+THIFN+VREER  AG+  G  S  +
Sbjct: 164 RLKPR---DESPEKGAAVPKFGEWDENDPASADGFTHIFNKVREER--AGKVPGTPSQPS 218

Query: 232 QRNYHRPTNNDGVKSCCFPWGKK 254
            ++  R  +ND  KSCCFPW +K
Sbjct: 219 YQDARRQGSNDSAKSCCFPWSRK 241

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071664|gb|ACJ84192.1| unknown [Medicago truncatula]

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 146/265 (55%), Positives = 180/265 (67%), Gaps = 16/265 (6%)

Query: 1   MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAP 60
           MAQR+HVPKFGNWE+ DNVPYT YFD+ARKGRTG  MINPNDP+EN DL+ D  +    P
Sbjct: 1   MAQRTHVPKFGNWESNDNVPYTAYFDEARKGRTGTKMINPNDPEENVDLVLDNSSSDHPP 60

Query: 61  PSKIK--AEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARHDDMSCRAATTS----- 113
           PS  K  A  E   G+  VR+T E  ++ +G D +Q  DSPARHD+ S R++  S     
Sbjct: 61  PSNTKPRANSEDLSGKGLVRSTIESHKSLDG-DPKQYVDSPARHDNASNRSSNDSTPRPG 119

Query: 114 --SGETYKKPVRNSI-GSDNSLERSPMHNQARNPRRGSLDSSSPSWEGKS-VYTNSHGTP 169
             S +  ++P R S  GS++S+ERSP+H QAR P        SPSWEGK+  Y +SHGTP
Sbjct: 120 VGSADNRRRPSRQSTAGSEHSVERSPLHRQARAP----AGRDSPSWEGKNNSYDSSHGTP 175

Query: 170 GRSRMRPNPRVDESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAGRAGMQSP 229
           GRSR+RP  R DE+PDKGAAVPKFGDWD +NP+SADGYTHIFN+VREER         +P
Sbjct: 176 GRSRLRPANRGDETPDKGAAVPKFGDWDVSNPASADGYTHIFNKVREERQGGAGHAPGTP 235

Query: 230 STQRNYHRPTNNDGVKSCCFPWGKK 254
           + + +  R  NND  + CCF WGKK
Sbjct: 236 NERPHVIRNQNNDKAQCCCFAWGKK 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500428|gb|AFK38280.1| unknown [Medicago truncatula]

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 145/265 (54%), Positives = 180/265 (67%), Gaps = 16/265 (6%)

Query: 1   MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAP 60
           MAQR+HVPKFGNWE+ DNVPYT YFDKARKGRTG  MINP+DP+EN DL+ D  +    P
Sbjct: 1   MAQRTHVPKFGNWESNDNVPYTAYFDKARKGRTGTKMINPSDPEENVDLVLDNSSSDHPP 60

Query: 61  PSKIK--AEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARHDDMSCRAATTS----- 113
           PS  K  A  E   G+  VR+T E  ++ +G D +Q  DSPARHD+ S R++  S     
Sbjct: 61  PSNTKPRANSEDLSGKGLVRSTIESHKSLDG-DPKQYVDSPARHDNASNRSSNDSTPRLG 119

Query: 114 --SGETYKKPVRNSI-GSDNSLERSPMHNQARNPRRGSLDSSSPSWEGKS-VYTNSHGTP 169
             S +  ++P R S  GS++S+ERSP+H QAR P        SPSWEGK+  Y +SHGTP
Sbjct: 120 VGSADNRRRPSRQSTAGSEHSVERSPLHRQARAP----AGRDSPSWEGKNNSYDSSHGTP 175

Query: 170 GRSRMRPNPRVDESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAGRAGMQSP 229
           GRSR+RP  R DE+PDKGAAVPKFGDWD +NP+SADGYTHIFN+VREER         +P
Sbjct: 176 GRSRLRPANRGDETPDKGAAVPKFGDWDVSNPASADGYTHIFNKVREERQGGAGHAPGTP 235

Query: 230 STQRNYHRPTNNDGVKSCCFPWGKK 254
           + + +  R  NND  + CCF WGK+
Sbjct: 236 NERPHVIRNQNNDKAQCCCFAWGKE 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|215789965|gb|ACJ70052.1| RIN4-like protein [Malus x domestica]

 Score =  256 bits (655), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 144/261 (55%), Positives = 185/261 (70%), Gaps = 29/261 (11%)

Query: 1   MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTG--GTMINPNDPQENPDLLSDYEAQAP 58
           MAQRSHVPKFGNWE++++VPYT YFDKARKGRTG  G MINPNDP+ENPD+LSD  A +P
Sbjct: 1   MAQRSHVPKFGNWEDQESVPYTAYFDKARKGRTGVGGKMINPNDPEENPDILSDTSASSP 60

Query: 59  APPSKIKAEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARH----DDMSCRAATTSS 114
               K++ EP KP+        +ER R++E  DLR + +SPA+     +    R    SS
Sbjct: 61  P---KVRPEPGKPV--------HERRRSREDNDLRFA-NSPAQRRSSGEHQPNRGRGVSS 108

Query: 115 GETYKKPVRNSIGSDNSLERSPMHNQARNPRRGSLDSSSPSWEGKSVYTNSHGTPGRSRM 174
           GET+++  R S GS+NS+ERSP+H  AR   R      SPSWEGK+ Y +SHGTP RSR+
Sbjct: 109 GETHRRAARPSAGSENSVERSPLHRNARVSGR-----DSPSWEGKASYESSHGTPARSRL 163

Query: 175 RPNPRVDESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAGRA-GMQSPSTQR 233
           +P    DESP+KGAAVPKFG+WDEN+P+SADG+THIFN+VREE+  AG+A G  S  + +
Sbjct: 164 KPR---DESPEKGAAVPKFGEWDENDPASADGFTHIFNKVREEK--AGKAPGTPSHPSYQ 218

Query: 234 NYHRPTNNDGVKSCCFPWGKK 254
           +  +  +ND  K CCFPWG+K
Sbjct: 219 DARKQGSNDSAKCCCFPWGRK 239

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514385|gb|AFK45254.1| unknown [Lotus japonicus]

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 140/259 (54%), Positives = 171/259 (66%), Gaps = 14/259 (5%)

Query: 1   MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAP 60
           MAQRSHVPKFGNW+ EDNVPYT YFDKARK RTG  MINPNDP+EN DL+ D       P
Sbjct: 1   MAQRSHVPKFGNWDGEDNVPYTAYFDKARKDRTGTKMINPNDPEENSDLVLDNNL----P 56

Query: 61  PSKIK--AEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARHDDMSC---RAATTSSG 115
           PSK K   + E P G+ + R+TYE  R+   GD +Q  DSPAR  + S          S 
Sbjct: 57  PSKSKPGVDSEDPSGKGSARSTYESHRSMADGDPKQFVDSPARQANDSAPRYGGQGVGSA 116

Query: 116 ETYKKPVRNSIGSDNSLERSPMHNQARNPRRGSLDSSSPSWEGKSVYTNSHGTPGRSRMR 175
           +  K+P R S GS+ S+ERSP+H QA+ P R      SPSWEGKS Y ++HGTPGRSR+R
Sbjct: 117 DNRKRPSRQSTGSEYSIERSPLHRQAKTPGR-----DSPSWEGKSSYDSNHGTPGRSRLR 171

Query: 176 PNPRVDESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAGRAGMQSPSTQRNY 235
           P  R DE+P+KGAAVPKFG+WD +NP+SADG+THIFN+VREER       + +P      
Sbjct: 172 PVNRGDETPEKGAAVPKFGEWDVSNPASADGFTHIFNKVREERQGGAGNALGTPERPHVI 231

Query: 236 HRPTNNDGVKSCCFPWGKK 254
               +ND V+ CCF + KK
Sbjct: 232 RSQPSNDKVQCCCFGFSKK 250

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724035|ref|NP_001235252.1| RIN4d protein [Glycine max] gi|255648162|gb|ACU24535.1| unknown [Glycine max] gi|300079889|gb|ADJ67470.1| RIN4d protein [Glycine max]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 135/257 (52%), Positives = 173/257 (67%), Gaps = 12/257 (4%)

Query: 1   MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAP 60
           MAQ S+VPKFGN E+EDNV  T + DKA+KG++G  MINPND +EN D++S     A  P
Sbjct: 1   MAQHSNVPKFGNQESEDNVLDTAHSDKAQKGQSGSKMINPNDTKENSDIVS----SADLP 56

Query: 61  PSKIKAEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARHD--DMSCRAATTSSGETY 118
            SK +   E P G+ +VRTT+E  +++E GD +Q  DSPARH   D S R     S +  
Sbjct: 57  HSKPRVHSEDPSGKGSVRTTHELQKSREDGDPKQFTDSPARHGGGDSSHRGHGVGSADNR 116

Query: 119 KKPVRNSIGSDNSLERSPMHNQARNPRRGSLDSSSPSWEGKSVYTNSHGTPGRSRMRPNP 178
           K+P R S G +++++RSP+H QA+ P R      SPSWEGK+ Y +SHGTPGRSR+RP+ 
Sbjct: 117 KRPSRQSTGPEHNIDRSPLHRQAKTPGR-----DSPSWEGKNSYDSSHGTPGRSRLRPSY 171

Query: 179 RVDESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERN-SAGRAGMQSPSTQRNYHR 237
           R DE+PD+GAAVPKFG+WDE+NP+SADGYTHIFN+VREE+   AG         Q     
Sbjct: 172 RGDETPDEGAAVPKFGEWDESNPASADGYTHIFNKVREEKQVGAGHVPGTPNGRQYAARN 231

Query: 238 PTNNDGVKSCCFPWGKK 254
              ND  +SCCF WGKK
Sbjct: 232 QRANDKAQSCCFCWGKK 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071162|gb|ACJ83941.1| unknown [Medicago truncatula]

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/257 (51%), Positives = 167/257 (64%), Gaps = 13/257 (5%)

Query: 1   MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAP 60
             QRSHVPKFGNWE ED+VPYT+YFDKARK R G  MINPNDP+ENPDL+    +     
Sbjct: 2   TTQRSHVPKFGNWEGEDDVPYTVYFDKARKSRPGSKMINPNDPEENPDLVLQNSSSDDVI 61

Query: 61  PSKIKAEPEKPLGQEAVRTTY-ERWRNKEGGDLRQSRDSPARHDDMSCRAATTSSGETYK 119
           P K +   E    +  VR T+ +  +NKE GD++ S +SPAR            S ++ +
Sbjct: 62  PPKPRVSSENQSEKGTVRLTHNDLQKNKEEGDVKHSVNSPARPG-----GHGVGSADSRR 116

Query: 120 KPVRNSIGS-DNSLERSPMHNQARNPRRGSLDSSSPSWEGKSVYTNSHGTPGRSRMRPNP 178
           +P R S  S + S+ERSP+H QA+ P R      SPSWEGKS Y +SHGTPGRSR+RP  
Sbjct: 117 RPSRQSTASSEYSVERSPLHRQAKTPGR-----DSPSWEGKSTYDSSHGTPGRSRLRPVN 171

Query: 179 RVDESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAGRAGMQSPSTQRNYHR- 237
           R DE PDK AAVPKFG+WDE++P+SADGYTHIFN+VREE++ A      +P+ +    R 
Sbjct: 172 RDDEIPDKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNTPGTPNGRSYVIRN 231

Query: 238 PTNNDGVKSCCFPWGKK 254
              ND  + CCF WG+K
Sbjct: 232 QPANDKAQGCCFFWGRK 248

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:2090250	211	RIN4 "RPM1 interacting protein	0.444	0.535	0.512	4.6e-25
TAIR|locus:2176620	130	NOI "AT5G55850" [Arabidopsis t	0.188	0.369	0.479	1.2e-09
TAIR|locus:2058284	73	AT2G04410 "AT2G04410" [Arabido	0.196	0.684	0.471	2.7e-09
TAIR|locus:505006667	73	AT5G40645 "AT5G40645" [Arabido	0.279	0.972	0.358	5.9e-09
TAIR|locus:2162002	80	AT5G63270 "AT5G63270" [Arabido	0.228	0.725	0.459	7.8e-09
TAIR|locus:2101185	89	AT3G48450 "AT3G48450" [Arabido	0.228	0.651	0.409	1.4e-07
TAIR|locus:2827881	69	AT2G17660 "AT2G17660" [Arabido	0.240	0.884	0.414	1.8e-07
TAIR|locus:504955684	225	AT3G07195 "AT3G07195" [Arabido	0.822	0.928	0.261	2.4e-07
TAIR|locus:4010713927	68	AT4G35655 "AT4G35655" [Arabido	0.188	0.705	0.428	2.3e-06

TAIR|locus:2090250 RIN4 "RPM1 interacting protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 61/119 (51%), Positives = 78/119 (65%)

Query:   139 NQARNPRRGSLDSSSPSWEGKS-VYTNSHGTPGRSRMRP-NPRVDESPDKGAAVPKFGDW 196
             N+A N R+G   S + S++ KS ++ NS+   G+SR +P N R DESP+K   VPKFGDW
Sbjct:    96 NEAANKRQGRA-SQNNSYDNKSPLHKNSYDGTGKSRPKPTNLRADESPEKVTVVPKFGDW 154

Query:   197 DENNPSSADGYTHIFNQVREERNS-AGRAGMQSPSTQRNYHRPTNNDGVKSCCFPWGKK 254
             DENNPSSADGYTHIFN+VREER+S A  +G     T ++   P N      CCF +G K
Sbjct:   155 DENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSRNPNNTSSC--CCFGFGGK 211

GO:0005634 "nucleus" evidence=ISM

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA;IMP

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0034051 "negative regulation of plant-type hypersensitive response" evidence=IMP

GO:0019897 "extrinsic to plasma membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2176620 NOI "AT5G55850" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 23/48 (47%), Positives = 36/48 (75%)

Query:   185 DKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAGRAGMQSPSTQ 232
             DKG  +PKFG+WD N+P+SA+G+T IFN+ R+E+ + G+ G    S++
Sbjct:    19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSE 66

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010167 "response to nitrate" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2058284 AT2G04410 "AT2G04410" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 25/53 (47%), Positives = 35/53 (66%)

Query:   185 DKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAGRA---GMQSPSTQRN 234
             DKG  +PKFG+WD N+PSSA+G+T IFN+ R E+   G++   G   P   +N
Sbjct:     3 DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKN 55

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:505006667 AT5G40645 "AT5G40645" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query:   174 MRPNPRVDESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREER--NSAGRAGMQSPST 231
             M  N +  +  D+   +PKFG+WD N+P+SA+G+T IF + R+++  N++GRA  Q    
Sbjct:     1 MASNNQQRQQQDR--PLPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRAASQRRDN 58

Query:   232 QRNYHRPTNNDGVKSCCF 249
              ++   PT     + CCF
Sbjct:    59 NKSQDEPTKK---RFCCF 73

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010167 "response to nitrate" evidence=ISS

TAIR|locus:2162002 AT5G63270 "AT5G63270" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 7.8e-09, P = 7.8e-09
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query:   185 DKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNS--AGRAGMQS-PSTQRNYHRPTNN 241
             +KG  +PKFG+WD NNP+SA+G+T IF++  +E+ +  A  AG  S  S QRN +   NN
Sbjct:     4 NKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSDQNN 63

Query:   242 D 242
             +
Sbjct:    64 N 64

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010167 "response to nitrate" evidence=ISS

TAIR|locus:2101185 AT3G48450 "AT3G48450" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query:   185 DKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNS--AGRAGMQS-PSTQRNYHRPTNN 241
             ++   +PKFG+WD  NP SA+G+T IFN+ R+++ +     AG +S  S  RN   P NN
Sbjct:     5 NRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKTMKTAVAGPESIVSPPRNEEPPKNN 64

Query:   242 D 242
             +
Sbjct:    65 N 65

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010167 "response to nitrate" evidence=ISS

TAIR|locus:2827881 AT2G17660 "AT2G17660" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 29/70 (41%), Positives = 44/70 (62%)

Query:   183 SPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAGRAGMQSPSTQRNYHRPTNND 242
             S + G A+PKFG+WD N+P++ADG+T IF++  E++ + GR+     ST+ N  R  + D
Sbjct:     3 SNEAGRALPKFGEWDVNDPATADGFTVIFSKAGEDKKT-GRS-----STKTNSQRKQDGD 56

Query:   243 --GVKS-CCF 249
                VK   CF
Sbjct:    57 KPAVKKWLCF 66

GO:0003674 "molecular_function" evidence=ND

GO:0010167 "response to nitrate" evidence=ISS

TAIR|locus:504955684 AT3G07195 "AT3G07195" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 59/226 (26%), Positives = 92/226 (40%)

Query:     1 MAQRSHVPKFGNWENEDNVPYTMYFDKARKGRTGGTMINPNDPQENPDLLSDYEAQAPAP 60
             MA R HVPKFG+W N+D  P+T+ FD AR  +      +   P+  P  L+      P P
Sbjct:     1 MANRPHVPKFGDWNNQDQ-PFTVVFDNARTNKRQDLYESIEKPETKPQELAP---PPPQP 56

Query:    61 PSKI-KAEPEKPLGQEAVRTTYERWRNKEGGDLRQSRDSPARHDDMSCRAATTSSGETYK 119
               +I K E  KP+ Q+  R      +N+                    R+ + S+G  Y 
Sbjct:    57 ARRIQKPEAPKPVKQDTPRAPPPTEKNRVKAPPADQLYGGGGSGGGG-RSGSGSAGGLYG 115

Query:   120 KPVRNSIGSDNSLERSPMHNQARNPRRGSLDSSSPSWEGKSV--YTNSHGTPG-RSRMRP 176
                  S+G+    +R P   +   PR+ +L   +    G ++  +  S G  G  S  + 
Sbjct:   116 GYGGGSVGN----QRQPPAPRPTQPRQ-NLRGGNNGRGGTTIPPFPGSVGAGGDMSYTQI 170

Query:   177 NPRVDESPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAG 222
               +V E  ++G   P  G    N PS      H  +Q   + +S G
Sbjct:   171 FEKVKEERNEGVIRPN-GGTAGNTPSRPINSQH--DQSTNQTSSKG 213

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713927 AT4G35655 "AT4G35655" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 24/56 (42%), Positives = 39/56 (69%)

Query:   190 VPKFGDWDENNPSSADGYTHIFNQVREERNSAGRAGMQSPSTQRNYHRPTNNDGVK 245
             +PKFG+WD N+P++A+G+T IF++  E++ + GR+  ++PS QR        DGVK
Sbjct:    10 LPKFGEWDVNDPATAEGFTVIFSKAGEDKKT-GRSSSKAPS-QRK------QDGVK 57


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.127   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      254       254   0.00084  114 3  11 23  0.43    34
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  221 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.03u 0.17s 29.20t   Elapsed:  00:00:01
  Total cpu time:  29.03u 0.17s 29.20t   Elapsed:  00:00:01
  Start:  Sat May 11 14:51:04 2013   End:  Sat May 11 14:51:05 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYN5	RIN4_ARATH	No assigned EC number	0.4330	0.8110	0.9763	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
pfam05627	39	pfam05627, AvrRpt-cleavage, Cleavage site for path	2e-11

>gnl|CDD|203293 pfam05627, AvrRpt-cleavage, Cleavage site for pathogenic type III effector avirulence factor Avr

 Score = 57.2 bits (138), Expect = 2e-11
 Identities = 22/39 (56%), Positives = 32/39 (82%)

Query: 183 SPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSA 221
           +   G+AVPKFG+WDENNP+SA+G+T IFN+ R+E+ + 
Sbjct: 1   TQVAGSAVPKFGEWDENNPASAEGFTVIFNKARDEKKTG 39

This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function. It is found both in the plant RIN4 (resistance R membrane-bound host-target protein) where it appears to contribute to the binding of the protein to both RCS (AvrRpt2 auto-cleavage site) and AvrB, the virulence factor from the infecting bacterium. The cleavage site for the AvrRpt2 avirulence protein would appear to be the sequence motifs VPQFGDW and LPKFGEW, both of which are highly conserved within the domain. Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
PF05627	39	AvrRpt-cleavage: Cleavage site for pathogenic type	99.72
PF05627	39	AvrRpt-cleavage: Cleavage site for pathogenic type	99.31

>PF05627 AvrRpt-cleavage: Cleavage site for pathogenic type III effector avirulence factor Avr; InterPro: IPR008700 This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function

Probab=99.72  E-value=6.4e-19  Score=120.05  Aligned_cols=38  Identities=63%  Similarity=1.235  Sum_probs=13.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCceehhHHHHHHHhhc
Q 041979          184 PDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSA  221 (254)
Q Consensus       184 ~~~~~~vPkFG~WD~~np~s~~~yT~iF~k~r~ekk~~  221 (254)
                      +.++.+|||||+||++||++|++|||||+|||+|||++
T Consensus         2 ~~~~~~vPkFG~WD~~~~~~~~~yT~iF~kar~~Kk~~   39 (39)
T PF05627_consen    2 PQKGSHVPKFGEWDENNPASAEGYTVIFEKAREEKKTG   39 (39)
T ss_dssp             ----------SGGGTT-TT---SS-EEEE---------
T ss_pred             CcCCCCCCCCCcccCCCCCCCCCeeehHHHHhhhccCC
Confidence            56789999999999999999999999999999999974

It is found both in the plant RIN4 (resistance R membrane-bound host-target protein) where it appears to contribute to the binding of the protein to both RCS (AvrRpt2 auto-cleavage site) and AvrB, the virulence factor from the infecting bacterium []. The cleavage site for the AvrRpt2 avirulence protein would appear to be the sequence motifs VPQFGDW and LPKFGEW, both of which are highly conserved within the domain []. ; PDB: 2NUD_C.

>PF05627 AvrRpt-cleavage: Cleavage site for pathogenic type III effector avirulence factor Avr; InterPro: IPR008700 This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function

Probab=99.31  E-value=4.4e-13  Score=91.53  Aligned_cols=31  Identities=48%  Similarity=1.045  Sum_probs=11.9

Q ss_pred             CCCCCCCCccCCCCcc---ceeeecccccCCCCC
Q 041979            5 SHVPKFGNWENEDNVP---YTMYFDKARKGRTGG   35 (254)
Q Consensus         5 ~~vPkFG~Wd~~~~~p---yT~~Fe~aR~~k~~g   35 (254)
                      ++|||||+||.++..+   ||+||++||++|++|
T Consensus         6 ~~vPkFG~WD~~~~~~~~~yT~iF~kar~~Kk~~   39 (39)
T PF05627_consen    6 SHVPKFGEWDENNPASAEGYTVIFEKAREEKKTG   39 (39)
T ss_dssp             ------SGGGTT-TT---SS-EEEE---------
T ss_pred             CCCCCCCcccCCCCCCCCCeeehHHHHhhhccCC
Confidence            5899999999987655   999999999999864

It is found both in the plant RIN4 (resistance R membrane-bound host-target protein) where it appears to contribute to the binding of the protein to both RCS (AvrRpt2 auto-cleavage site) and AvrB, the virulence factor from the infecting bacterium []. The cleavage site for the AvrRpt2 avirulence protein would appear to be the sequence motifs VPQFGDW and LPKFGEW, both of which are highly conserved within the domain []. ; PDB: 2NUD_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	254
2nud_C	35	The Structure Of The Type Iii Effector Avrb Complex		2e-12

>pdb|2NUD|C Chain C, The Structure Of The Type Iii Effector Avrb Complexed With A High-Affinity Rin4 Peptide Length = 35

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/35 (85%), Positives = 32/35 (91%)
Query: 184 PDKGAAVPKFGDWDENNPSSADGYTHIFNQVREER 218
           P+K   VPKFGDWDENNPSSADGYTHIFN+VREER
Sbjct: 1   PEKVTVVPKFGDWDENNPSSADGYTHIFNKVREER 35

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
2nud_C	35	RIN4, RPM1-interacting protein 4; AVRB RIN4 high-a	1e-11

>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV} Length = 35

 Score = 57.0 bits (137), Expect = 1e-11
 Identities = 30/35 (85%), Positives = 32/35 (91%)

Query: 184 PDKGAAVPKFGDWDENNPSSADGYTHIFNQVREER 218
           P+K   VPKFGDWDENNPSSADGYTHIFN+VREER
Sbjct: 1   PEKVTVVPKFGDWDENNPSSADGYTHIFNKVREER 35

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
2nud_C	35	RIN4, RPM1-interacting protein 4; AVRB RIN4 high-a	99.74
2nud_C	35	RIN4, RPM1-interacting protein 4; AVRB RIN4 high-a	98.85

>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}

Probab=99.74  E-value=1e-19  Score=120.41  Aligned_cols=35  Identities=86%  Similarity=1.443  Sum_probs=22.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCceehhHHHHHHH
Q 041979          184 PDKGAAVPKFGDWDENNPSSADGYTHIFNQVREER  218 (254)
Q Consensus       184 ~~~~~~vPkFG~WD~~np~s~~~yT~iF~k~r~ek  218 (254)
                      |+++++|||||+||++||+++++|||||+||||||
T Consensus         1 ~~~~~~vPkFG~WD~~n~~s~~~yT~iF~k~re~K   35 (35)
T 2nud_C            1 PEKVTVVPKFGDWDENNPSSADGYTHIFNKVREER   35 (35)
T ss_dssp             --------CCSGGGTTCTTCCCSSCEEEECC----
T ss_pred             CCCCCCCCCCCcccCCCCCCCCCEeehhhhhhhcC
Confidence            46789999999999999999999999999999997

>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}

Probab=98.85  E-value=6.4e-10  Score=73.57  Aligned_cols=29  Identities=41%  Similarity=0.852  Sum_probs=17.5

Q ss_pred             CCCCCCCCCccCCC---CccceeeecccccCC
Q 041979            4 RSHVPKFGNWENED---NVPYTMYFDKARKGR   32 (254)
Q Consensus         4 ~~~vPkFG~Wd~~~---~~pyT~~Fe~aR~~k   32 (254)
                      ..+|||||+||.++   ...||++|++||..|
T Consensus         4 ~~~vPkFG~WD~~n~~s~~~yT~iF~k~re~K   35 (35)
T 2nud_C            4 VTVVPKFGDWDENNPSSADGYTHIFNKVREER   35 (35)
T ss_dssp             -----CCSGGGTTCTTCCCSSCEEEECC----
T ss_pred             CCCCCCCCcccCCCCCCCCCEeehhhhhhhcC
Confidence            35899999999764   357999999999876

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00