Citrus Sinensis ID: 042033

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490

MAIRFQAPKLLKNLRYFTRALNSASTTSISAVSPLNFDEKPEPTIEKPAANRLGSSVLDINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQLMRKELMRRVNAAVM

cccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHHcccccccEEEEEEcccccccHHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHccc

cccEEccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccHHHHHHHHHHHHHHHccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHHHHccccccccEHHHHHHHHHHHcHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHccccccccEEEHHHcccccHcHHHHHcccccEEEEcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccc

mairfqapKLLKNLRYFTRALnsasttsisavsplnfdekpeptiekpaanrlgssvldindHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFyehfcagenapeatDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQsakslppesaSFVIAKISAICPMSLLQRVSDLLRWqqrdpsfnlpwklnnfplfsdcsplyhtlqkpepltlqEENELQSAHQRLQKLCQECLEanvpltvdaedtfvqPAIDYLTYNaalsnnkagkpivYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAAslgfdspihnsiqETHACYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKatdlgikgdqKLEFAQLYGMAEALSYGLrnagfqvskympfgpvdkiiPYLLRRAEenrgflsasnLDRQLMRKELMRRVNAAVM

mairfqapkLLKNLRYFTRALNsasttsisavsplnfdEKPEPTIEKPAANRLGSSVLDINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCagenapeatDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAalsnnkagkpIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRgflsasnldrqlmrKELMRRVNAAVM

********KLLKNLRYFTRAL***********************************VLDINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTV**********ASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQ******************RLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGF************************

********KL**************************************************NDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQK*****LQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQLMRKELMRRVNAAV*

**IRFQAPKLLKNLRYFT**************************************VLDINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQLMRKELMRRVNAA**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MAIRFQAPKLLKNLRYFTRALNSASTTSISAVSPLNFDEKPEPTIEKPAANRLGSSVLDINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLxxxxxxxxxxxxxxxxxxxxxCLEANVPLTVDAEDTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQLMRKELMRRVNAAVM

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		490	2.2.26 [Sep-21-2011]
Q6NKX1		476	Proline dehydrogenase 2,	yes	no	0.961	0.989	0.558	1e-158
P92983		499	Proline dehydrogenase 1,	no	no	0.948	0.931	0.572	1e-153
Q86H28		572	Proline dehydrogenase 1,	yes	no	0.730	0.625	0.325	8e-51
Q9UF12		536	Probable proline dehydrog	yes	no	0.830	0.759	0.331	2e-44
A6QQ74		461	Probable proline dehydrog	yes	no	0.820	0.872	0.318	3e-44
Q9WU79		599	Proline dehydrogenase 1,	yes	no	0.506	0.414	0.384	5e-44
Q8VCZ9		456	Probable proline dehydrog	no	no	0.812	0.872	0.333	3e-42
Q148G5		593	Proline dehydrogenase 1,	no	no	0.481	0.397	0.384	6e-42
Q2V057		456	Probable proline dehydrog	no	no	0.826	0.888	0.322	5e-41
O43272		600	Proline dehydrogenase 1,	no	no	0.467	0.381	0.398	4e-40

>sp\|Q6NKX1\|PROD2_ARATH Proline dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=POX2 PE=2 SV=1	Back alignment and function desciption

 Score =  558 bits (1438), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 274/491 (55%), Positives = 368/491 (74%), Gaps = 20/491 (4%)

Query: 1   MAIRFQAPKLLKNLRYFTRALNSASTTSISAVSPLNFDEKPEPTIEKPAANRLGSSVLDI 60
           MA RF  P L+   R+ T +     TT I  +  L+FD+ P+P ++           LD+
Sbjct: 1   MANRFLRPNLIH--RFSTVSPVGPPTTIIPEI--LSFDQ-PKPEVD-----------LDL 44

Query: 61  NDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSF 120
           +D  +LF+ +  + L+R+ A LH  ++ P+VD G W+M+S+LMD  + R++V+  V+ +F
Sbjct: 45  SDQARLFASVPISTLLRSTAILHATSIGPMVDLGSWLMSSKLMDTTVTRDLVLRIVKGTF 104

Query: 121 YEHFCAGENAPEATDCVRRVNDA-GLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSL 179
           Y+HFCAGE+A  A   V  V ++ GL+GMLVY VEH +D   C++N+Q F++TV++AK+L
Sbjct: 105 YDHFCAGEDAAAAARRVSSVYESTGLKGMLVYGVEHAEDGGACDENIQKFIETVEAAKTL 164

Query: 180 PPESASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQ 239
           P    S V+ KI+AICPM++L+RVSDLLRWQ ++P+F LPWKLN+FP+FS  SPLYHT  
Sbjct: 165 PSSHLSSVVVKITAICPMNVLKRVSDLLRWQYKNPNFKLPWKLNSFPVFSGLSPLYHTTS 224

Query: 240 KPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTY-NAALSNN 298
           +PEPLT++EE EL+ AH+RL+ +C  C E+NVPL +DAEDT +QPAIDY+ Y +A + N+
Sbjct: 225 EPEPLTVEEERELEKAHERLKSVCLRCQESNVPLLIDAEDTILQPAIDYMAYWSAIMFNS 284

Query: 299 KAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDS 358
              +PIVYNTIQAYLKDA ERL LA   +EKM VP+GFKLVRGAYMSSE+KLA SLG+ S
Sbjct: 285 DKDRPIVYNTIQAYLKDAGERLHLALRESEKMNVPIGFKLVRGAYMSSEAKLADSLGYKS 344

Query: 359 PIHNSIQETHACYNDCASYMLEKIADGSG-AVVLATHNVESGQLAAAKATDLGI-KGDQK 416
           P+H++IQ TH CYNDC S+++EK ++GSG AV+LATHN +SG+L A KA++LGI K + K
Sbjct: 345 PVHDTIQNTHDCYNDCMSFLMEKASNGSGIAVILATHNTDSGKLGARKASELGINKENGK 404

Query: 417 LEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQL 476
           +EFAQLYGM++ALS+GL+ AGF VSKYMP+GPVD  IPYL+RRA ENRG +S   LDRQL
Sbjct: 405 IEFAQLYGMSDALSFGLKRAGFNVSKYMPYGPVDTAIPYLIRRAYENRGMMSTGALDRQL 464

Query: 477 MRKELMRRVNA 487
           MRKEL RRV A
Sbjct: 465 MRKELKRRVMA 475

Converts proline to delta-1-pyrroline-5-carboxylate.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 5EC: .EC: 9EC: 9EC: .EC: 8

>sp\|P92983\|PROD1_ARATH Proline dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=POX1 PE=1 SV=2	Back alignment and function description

>sp\|Q86H28\|PROD_DICDI Proline dehydrogenase 1, mitochondrial OS=Dictyostelium discoideum GN=prodh PE=3 SV=1	Back alignment and function description

>sp\|Q9UF12\|PROD2_HUMAN Probable proline dehydrogenase 2 OS=Homo sapiens GN=PRODH2 PE=2 SV=1	Back alignment and function description

>sp\|A6QQ74\|PROD2_BOVIN Probable proline dehydrogenase 2 OS=Bos taurus GN=PRODH2 PE=2 SV=1	Back alignment and function description

>sp\|Q9WU79\|PROD_MOUSE Proline dehydrogenase 1, mitochondrial OS=Mus musculus GN=Prodh PE=2 SV=2	Back alignment and function description

>sp\|Q8VCZ9\|PROD2_MOUSE Probable proline dehydrogenase 2 OS=Mus musculus GN=Prodh2 PE=2 SV=1	Back alignment and function description

>sp\|Q148G5\|PROD_BOVIN Proline dehydrogenase 1, mitochondrial OS=Bos taurus GN=PRODH PE=2 SV=1	Back alignment and function description

>sp\|Q2V057\|PROD2_RAT Probable proline dehydrogenase 2 OS=Rattus norvegicus GN=Prodh2 PE=2 SV=1	Back alignment and function description

>sp\|O43272\|PROD_HUMAN Proline dehydrogenase 1, mitochondrial OS=Homo sapiens GN=PRODH PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		490
225451907		500	PREDICTED: proline dehydrogenase 2, mito	0.993	0.974	0.645	0.0
224077536		435	predicted protein [Populus trichocarpa]	0.883	0.995	0.717	0.0
388496156		489	unknown [Medicago truncatula]	0.991	0.993	0.606	1e-180
217072600		489	unknown [Medicago truncatula]	0.991	0.993	0.604	1e-179
356545588		495	PREDICTED: proline dehydrogenase 2, mito	0.991	0.981	0.607	1e-178
224127580		440	predicted protein [Populus trichocarpa]	0.883	0.984	0.689	1e-177
351723697		497	proline dehydrogenase [Glycine max] gi\|4	0.989	0.975	0.602	1e-175
356568869		489	PREDICTED: proline dehydrogenase 2, mito	0.987	0.989	0.610	1e-175
356526593		494	PREDICTED: proline dehydrogenase 2, mito	0.985	0.977	0.594	1e-174
118430824		508	proline dehydrogenase [Actinidia delicio	0.997	0.962	0.605	1e-174

>gi\|225451907\|ref\|XP_002282769.1\| PREDICTED: proline dehydrogenase 2, mitochondrial [Vitis vinifera] gi\|298204407\|emb\|CBI16887.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/499 (64%), Positives = 402/499 (80%), Gaps = 12/499 (2%)

Query: 1   MAIRFQAPKLLKNLRYFTRALNSASTTSISAVSPLNFDEKPE------PTIEKPAANRLG 54
           MA R  +P    NLR F R L+S S +SI+ VSPLN  EKPE      PT    A +   
Sbjct: 1   MANRLVSPSKFLNLRCFVRTLHS-SPSSITDVSPLNLAEKPEETTLLSPTFATGATS--S 57

Query: 55  SSVLDINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMC 114
           +S +D++D + LFS +ST KL+R++ NLHLA +EP+VD G+WVM SR+++  + RE+V+ 
Sbjct: 58  TSTIDLHDVKGLFSSMSTAKLLRSSVNLHLATLEPMVDVGMWVMKSRVLETAVLREIVLG 117

Query: 115 TVRHSFYEHFCAGENAPEATDCVRRV-NDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTV 173
           T+RH+FYEHFCAG++  EA    R + N AGLRGMLVYA+EHT D +  ++NL+GF++TV
Sbjct: 118 TIRHTFYEHFCAGQDVEEACWTARTIWNSAGLRGMLVYALEHTTDNATSDRNLEGFIRTV 177

Query: 174 QSAKSLPPESASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSP 233
           + AK LPP S SFVIAK++AIC + LL+RVSDLLRWQ RDPSF+LPW+ N FP+F+D SP
Sbjct: 178 EGAKRLPPSSVSFVIAKMTAICSIDLLKRVSDLLRWQHRDPSFHLPWRQNCFPIFADSSP 237

Query: 234 LYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNA 293
            YHTL++P+PLT QEE +LQ A QRL KLCQ+C+EAN+PL+VDAE T VQPAIDYLTY+A
Sbjct: 238 FYHTLERPDPLTPQEEKDLQLALQRLFKLCQKCVEANLPLSVDAEYTSVQPAIDYLTYSA 297

Query: 294 ALSNNK-AGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAA 352
           A+  NK    PIVY TIQAYLKDAKERL LA +AA+KMGVP+GFKLVRGAY+SSE++LA+
Sbjct: 298 AIQYNKDKNNPIVYGTIQAYLKDAKERLLLAVQAADKMGVPIGFKLVRGAYISSETQLAS 357

Query: 353 SLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGI- 411
           SLG+DSP+HNSI+ETHAC+N CAS++LE+IA GSGAVVLATHN+ESG+L A KA DLGI 
Sbjct: 358 SLGYDSPVHNSIEETHACFNGCASFLLERIAGGSGAVVLATHNLESGKLLATKARDLGIS 417

Query: 412 KGDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASN 471
           K D K++FAQLYGM+E+LS+GLRNAGFQVSKYM FGPV+K++PYLLRRAEENRG LS S 
Sbjct: 418 KEDHKVQFAQLYGMSESLSFGLRNAGFQVSKYMAFGPVEKVMPYLLRRAEENRGLLSTST 477

Query: 472 LDRQLMRKELMRRVNAAVM 490
           LDR LMRKEL RR+ AAV+
Sbjct: 478 LDRHLMRKELKRRIKAAVL 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224077536\|ref\|XP_002305291.1\| predicted protein [Populus trichocarpa] gi\|222848255\|gb\|EEE85802.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|388496156\|gb\|AFK36144.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|217072600\|gb\|ACJ84660.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356545588\|ref\|XP_003541221.1\| PREDICTED: proline dehydrogenase 2, mitochondrial-like [Glycine max]	Back alignment and taxonomy information

>gi\|224127580\|ref\|XP_002329313.1\| predicted protein [Populus trichocarpa] gi\|222870767\|gb\|EEF07898.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|351723697\|ref\|NP_001237288.1\| proline dehydrogenase [Glycine max] gi\|40457261\|gb\|AAR86686.1\| proline dehydrogenase [Glycine max]	Back alignment and taxonomy information

>gi\|356568869\|ref\|XP_003552630.1\| PREDICTED: proline dehydrogenase 2, mitochondrial-like [Glycine max]	Back alignment and taxonomy information

>gi\|356526593\|ref\|XP_003531901.1\| PREDICTED: proline dehydrogenase 2, mitochondrial-like [Glycine max]	Back alignment and taxonomy information

>gi\|118430824\|gb\|ABK91948.1\| proline dehydrogenase [Actinidia deliciosa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		490
TAIR\|locus:2089706		499	ERD5 "EARLY RESPONSIVE TO DEHY	0.948	0.931	0.572	2.8e-144
TAIR\|locus:2166645		476	AT5G38710 [Arabidopsis thalian	0.961	0.989	0.558	3.3e-143
RGD\|1590932		599	Prodh "proline dehydrogenase (	0.495	0.405	0.384	4.5e-51
DICTYBASE\|DDB_G0275669		572	DDB_G0275669 "proline dehydrog	0.867	0.743	0.313	2.2e-50
UNIPROTKB\|F1PJZ8		464	PRODH2 "Uncharacterized protei	0.838	0.885	0.336	1.2e-49
UNIPROTKB\|O43272		600	PRODH "Proline dehydrogenase 1	0.495	0.405	0.404	2.6e-49
WB\|WBGene00007197		616	B0513.5 [Caenorhabditis elegan	0.495	0.394	0.350	4.3e-49
UNIPROTKB\|O45228		616	B0513.5 "Proline dehydrogenase	0.495	0.394	0.350	4.3e-49
UNIPROTKB\|E7EQL6		492	PRODH "Proline dehydrogenase 1	0.495	0.493	0.404	8.7e-49
UNIPROTKB\|F1RLH1		460	PRODH2 "Uncharacterized protei	0.834	0.889	0.332	4.7e-48

TAIR\|locus:2089706 ERD5 "EARLY RESPONSIVE TO DEHYDRATION 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1410 (501.4 bits), Expect = 2.8e-144, P = 2.8e-144
 Identities = 270/472 (57%), Positives = 360/472 (76%)

Query:    25 STTSISAVSP--LNFDEK-PEPTIEKPAANRLGSSVLDINDHEKLFSLLSTTKLIRAAAN 81
             + T+ +AV P  L+F ++ PEP +  P         LD++D  +LFS + T+ L+R+ A 
Sbjct:    27 TVTASTAVVPEILSFGQQAPEPPLHHPKPTEQSHDGLDLSDQARLFSSIPTSDLLRSTAV 86

Query:    82 LHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGENAPEATDCVRRVN 141
             LH AA+ P+VD G WVM+S+LMD  + R +V+  V+ +FY+HFCAGE+A  A + VR V 
Sbjct:    87 LHAAAIGPMVDLGTWVMSSKLMDASVTRGMVLGLVKSTFYDHFCAGEDADAAAERVRSVY 146

Query:   142 DA-GLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLL 200
             +A GL+GMLVY VEH DD   C+ N+Q F++T+++AKSLP    S V+ KI+AICP+SLL
Sbjct:   147 EATGLKGMLVYGVEHADDAVSCDDNMQQFIRTIEAAKSLPTSHFSSVVVKITAICPISLL 206

Query:   201 QRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQ 260
             +RVSDLLRW+ + P+F L WKL +FP+FS+ SPLYHT  +PEPLT +EE EL++AH R+Q
Sbjct:   207 KRVSDLLRWEYKSPNFKLSWKLKSFPVFSESSPLYHTNSEPEPLTAEEERELEAAHGRIQ 266

Query:   261 KLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALS-NNKAGKPIVYNTIQAYLKDAKER 319
             ++C++C E+NVPL +DAEDT +QPAIDY+ Y++A+  N    +PIVYNTIQAYL+DA ER
Sbjct:   267 EICRKCQESNVPLLIDAEDTILQPAIDYMAYSSAIMFNADKDRPIVYNTIQAYLRDAGER 326

Query:   320 LFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYML 379
             L LA + AEK  VPMGFKLVRGAYMSSE+ LA SLG  SP+H++IQ+TH+CYNDC ++++
Sbjct:   327 LHLAVQNAEKENVPMGFKLVRGAYMSSEASLADSLGCKSPVHDTIQDTHSCYNDCMTFLM 386

Query:   380 EKIADGSG-AVVLATHNVESGQLAAAKATDLGI-KGDQKLEFAQLYGMAEALSYGLRNAG 437
             EK ++GSG  VVLATHN +SG+LA+ KA+DLGI K + K+EFAQLYGM++ALS+GL+ AG
Sbjct:   387 EKASNGSGFGVVLATHNADSGRLASRKASDLGIDKQNGKIEFAQLYGMSDALSFGLKRAG 446

Query:   438 FQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQLMRKELMRRVNAAV 489
             F VSKYMPFGPV   IPYLLRRA ENRG ++    DRQLMR EL RR+ A +
Sbjct:   447 FNVSKYMPFGPVATAIPYLLRRAYENRGMMATGAHDRQLMRMELKRRLIAGI 498

GO:0004657 "proline dehydrogenase activity" evidence=IEA;ISS;IMP

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006537 "glutamate biosynthetic process" evidence=IEA;ISS

GO:0006562 "proline catabolic process" evidence=IEA;IGI;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IGI

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR\|locus:2166645 AT5G38710 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

RGD\|1590932 Prodh "proline dehydrogenase (oxidase) 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0275669 DDB_G0275669 "proline dehydrogenase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PJZ8 PRODH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|O43272 PRODH "Proline dehydrogenase 1, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

WB\|WBGene00007197 B0513.5 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|O45228 B0513.5 "Proline dehydrogenase 1, mitochondrial" [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|E7EQL6 PRODH "Proline dehydrogenase 1, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RLH1 PRODH2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A6QQ74	PROD2_BOVIN	1, ., 5, ., 9, 9, ., 8	0.3186	0.8204	0.8720	yes	no
Q6NKX1	PROD2_ARATH	1, ., 5, ., 9, 9, ., 8	0.5580	0.9612	0.9894	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.5.99.8	0.946
3rd Layer	1.5.99	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		490
PLN02681		455	PLN02681, PLN02681, proline dehydrogenase	0.0
pfam01619		341	pfam01619, Pro_dh, Proline dehydrogenase	2e-70
PRK11904		1038	PRK11904, PRK11904, bifunctional proline dehydroge	8e-14
COG0506		391	COG0506, PutA, Proline dehydrogenase [Amino acid t	7e-07
PRK11905		1208	PRK11905, PRK11905, bifunctional proline dehydroge	8e-07

>gnl\|CDD\|215366 PLN02681, PLN02681, proline dehydrogenase	Back alignment and domain information

 Score =  642 bits (1659), Expect = 0.0
 Identities = 256/451 (56%), Positives = 331/451 (73%), Gaps = 7/451 (1%)

Query: 41  PEPTIEKPAANRLGSSVLDINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNS 100
           P               VLD +DH  LF+ LST++L+R+   L L A+ PLVD G W++ S
Sbjct: 9   PPAVTSTTTPAS--DDVLDFSDHAALFAGLSTSELLRSLLVLQLCAIGPLVDLGEWLLTS 66

Query: 101 RLMDIDLAREVVMCTVRHSFYEHFCAGENAPEATDCVRRVNDAGLRGMLVYAVEHTDDVS 160
            LM   L R +V+  V+ +FY HFCAGE+A EA   VRR+ + GL G+L YA E   D +
Sbjct: 67  PLMV--LGRAIVLALVKATFYSHFCAGEDAEEAARTVRRLWELGLGGILDYAAEDAGDNA 124

Query: 161 ECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPW 220
            C++NL+ FL  +++A +LPP S S    KI+A+CP SLL+RVSDLLRWQ RDP+  LPW
Sbjct: 125 ACDRNLEKFLAAIRAAATLPPSS-SSAAVKITALCPPSLLERVSDLLRWQDRDPNGKLPW 183

Query: 221 KLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDT 280
           K  +FPLF+D SPLYH   +PEPLT +EE  L+ AH+RLQKLC+   +  VPL +DAE T
Sbjct: 184 KQWSFPLFADSSPLYHATSEPEPLTAEEERLLELAHERLQKLCERAAQLGVPLLIDAEYT 243

Query: 281 FVQPAIDYLTYNAALSNNK-AGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLV 339
            +QPAIDY+TY+ A   NK   +PIVY T QAYLKDA+ERL L  E +E+ GVP+G KLV
Sbjct: 244 SLQPAIDYITYDLAREFNKGKDRPIVYGTYQAYLKDARERLRLDLERSEREGVPLGAKLV 303

Query: 340 RGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGAVVLATHNVESG 399
           RGAY+S E +LAASLG  SP+H++IQ+THACYN CA ++LEK ++G G V+LATHNVESG
Sbjct: 304 RGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGDGEVMLATHNVESG 363

Query: 400 QLAAAKATDLGI-KGDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDKIIPYLLR 458
           +LAAAK  +LG+ KGD +++FAQL GM++ LS+GL NAGF+VSKY+P+GPV+++IPYLLR
Sbjct: 364 ELAAAKMNELGLHKGDPRVQFAQLLGMSDNLSFGLGNAGFRVSKYLPYGPVEEVIPYLLR 423

Query: 459 RAEENRGFLSASNLDRQLMRKELMRRVNAAV 489
           RAEENRG LS S +DRQL+RKEL RR+ AAV
Sbjct: 424 RAEENRGLLSGSAIDRQLLRKELKRRLKAAV 454

Length = 455

>gnl\|CDD\|216609 pfam01619, Pro_dh, Proline dehydrogenase	Back alignment and domain information

>gnl\|CDD\|237017 PRK11904, PRK11904, bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	Back alignment and domain information

>gnl\|CDD\|223580 COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|237018 PRK11905, PRK11905, bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		490
PLN02681		455	proline dehydrogenase	100.0
KOG0186		506	consensus Proline oxidase [Amino acid transport an	100.0
PF01619		313	Pro_dh: Proline dehydrogenase; InterPro: IPR002872	100.0
PRK11904		1038	bifunctional proline dehydrogenase/pyrroline-5-car	100.0
PRK11905		1208	bifunctional proline dehydrogenase/pyrroline-5-car	100.0
PRK11809		1318	putA trifunctional transcriptional regulator/proli	100.0
COG0506		391	PutA Proline dehydrogenase [Amino acid transport a	99.94
COG0506		391	PutA Proline dehydrogenase [Amino acid transport a	99.79
COG4230		769	Delta 1-pyrroline-5-carboxylate dehydrogenase [Ene	96.58
KOG0186		506	consensus Proline oxidase [Amino acid transport an	95.89
PF14850		114	Pro_dh-DNA_bdg: DNA-binding domain of Proline dehy	90.23
PRK13210		284	putative L-xylulose 5-phosphate 3-epimerase; Revie	86.33
TIGR00542		279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	85.26
PRK13209		283	L-xylulose 5-phosphate 3-epimerase; Reviewed	82.1
PF01261		213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	81.24

>PLN02681 proline dehydrogenase	Back alignment and domain information

Probab=100.00  E-value=7.7e-117  Score=934.07  Aligned_cols=433  Identities=59%  Similarity=0.988  Sum_probs=412.8

Q ss_pred             CCcccccCChhhHhhcCCHHHHHHHHHhhhhccCcchhhhhHHhhhhhhcCchHHhHHHHHHHHHHhhcceeccCChHHH
Q 042033           54 GSSVLDINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGENAPEA  133 (490)
Q Consensus        54 ~~~~l~F~d~~~af~~~st~~Llrs~~v~~l~s~~~lv~~~~~ll~~~~~~~~~~~~~~~~~~k~Tf~~~FvaGEt~~e~  133 (490)
                      .+..++|+|++.+|+.+|||+|+||++||++|++++||++|.++|+..+.  ..++.+++++||+|||+|||||||.+|+
T Consensus        20 ~~~~~~f~d~~~~f~~~s~~~Llr~~~v~~~~s~~~lv~~~~~~~~~~~~--~~~~~~~~~~~k~t~y~~F~aGEt~~e~   97 (455)
T PLN02681         20 SDDVLDFSDHAALFAGLSTSELLRSLLVLQLCAIGPLVDLGEWLLTSPLM--VLGRAIVLALVKATFYSHFCAGEDAEEA   97 (455)
T ss_pred             CCCCCCcCchHHHHhcCCHHHHHHHHHHHHHhcchHHhhhhHHHHHHHHh--hcccHHHHHHHHHHHHhheecCCCHHHH
Confidence            46688999999999999999999999999999999999999999985322  3344579999999999999999999999


Q ss_pred             HHHHHHHHhCCceeecccccccCCChHHHHHHHHHHHHHHHHhhCCCCCCCCeEEEEeCCcCchhHHHHhHHHhhhhhcC
Q 042033          134 TDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICPMSLLQRVSDLLRWQQRD  213 (490)
Q Consensus       134 ~~~i~~L~~~Gi~~iLdy~~E~~~~~~~~d~~~~~~l~~I~~~~~~~~~~~~~vsvKlTaLg~~~ll~~~s~~l~~~~~~  213 (490)
                      ++++++|++.|+++||||++|++.++++||++++.|+++|+.++..+.++ ++|+||+||||+++||+++|++++|.+.+
T Consensus        98 ~~~i~~L~~~G~~~iLdy~~E~~~~e~~~d~~~~~~l~~Id~~~~~~~~~-~~vsiK~Talg~~~ll~~~s~~~~~~~~~  176 (455)
T PLN02681         98 ARTVRRLWELGLGGILDYAAEDAGDNAACDRNLEKFLAAIRAAATLPPSS-SSAAVKITALCPPSLLERVSDLLRWQDRD  176 (455)
T ss_pred             HHHHHHHHHCCCeEEeeccccCcCCHHHHHHHHHHHHHHHHHHhhcCCCC-CceEEeeccCCcHHHHHhhhhhhhhcccc
Confidence            99999999999999999999999999999999999999999998765432 79999999999999999999999999999


Q ss_pred             CCCCCCcccCCCCCccCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccCchhHHHHHHHHH
Q 042033          214 PSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNA  293 (490)
Q Consensus       214 ~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~L~~~e~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s~~q~aId~~~~~l  293 (490)
                      ++..+||++.++++.+.++|.|+...++++||++|+.+++.+++|+++||++|+++||+|+|||||+|+||+||.++.+|
T Consensus       177 ~~~~l~~~~~~~~l~~~~s~~~~~~~~~~~l~~~e~~~~~~~~~rl~~i~~~A~~~gv~l~IDAE~s~~q~aid~l~~~l  256 (455)
T PLN02681        177 PNGKLPWKQWSFPLFADSSPLYHATSEPEPLTAEEERLLELAHERLQKLCERAAQLGVPLLIDAEYTSLQPAIDYITYDL  256 (455)
T ss_pred             ccccccccccccccccccchhhhhccccccCchhhhhHHHHHHHHHHHHHHHHHHCCCEEEEeCCcccchhHHHHHHHHH
Confidence            99999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcC-CCCceeeeehhcchhhHHHHHHHHHHHHHcCCCceeEEeccCCCchhhHHHhhcCCCCCCccCHHHHHHHHH
Q 042033          294 ALSNNKA-GKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYN  372 (490)
Q Consensus       294 ~~~~N~~-~~p~V~~T~QaYLk~s~~~L~~~l~~A~~~g~~~gvKLVRGAY~e~E~~~A~~~G~~~Pi~~tk~~Td~~Y~  372 (490)
                      |++||++ ++|+||||||||||||+++|..++++|+++|+++||||||||||++|+++|+++|||+|||++|++||+||+
T Consensus       257 ~~~yN~~~~~~~V~~T~QaYLk~t~~~l~~~l~~a~~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~  336 (455)
T PLN02681        257 AREFNKGKDRPIVYGTYQAYLKDARERLRLDLERSEREGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYN  336 (455)
T ss_pred             HHHhccccCCCcEEEEEeCccccCHHHHHHHHHHHHhcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHH
Confidence            9999975 689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCcEEEeCCChHHHHHHHHHHHHhCCC-CCCceEEeecccCChHHHHHHHhCCCCCeeEeeccCccc
Q 042033          373 DCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIK-GDQKLEFAQLYGMAEALSYGLRNAGFQVSKYMPFGPVDK  451 (490)
Q Consensus       373 ~~~~~ll~~~~~~~~~~~vATHN~~si~~a~~~~~~~gi~-~~~~veF~qL~GM~D~ls~~L~~~G~~V~kYvPyG~~~e  451 (490)
                      +|+++|++++..+.++++|||||++||++|+++|.++|++ .+++|+|||||||+|++++.|+++||+||||+||||+++
T Consensus       337 ~~~~~lL~~~~~~~~~~~vATHN~~Si~~a~~~~~~~gi~~~~~~veF~qL~GM~d~ls~~L~~~G~~V~kYvPyG~~~e  416 (455)
T PLN02681        337 RCAEFLLEKASNGDGEVMLATHNVESGELAAAKMNELGLHKGDPRVQFAQLLGMSDNLSFGLGNAGFRVSKYLPYGPVEE  416 (455)
T ss_pred             HHHHHHhhhhccCCeeeEEecCCHHHHHHHHHHHHHcCCCCCCCCEEEeccCCCCHHHHHHHHhcCCCEEEEeeccCchh
Confidence            9999999988666689999999999999999999999998 446999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhhhccccccHHHHHHHHHHHHHHhhhhc
Q 042033          452 IIPYLLRRAEENRGFLSASNLDRQLMRKELMRRVNAAV  489 (490)
Q Consensus       452 ~lpYL~RRa~EN~~~l~~~~~e~~ll~~El~RR~~~~~  489 (490)
                      |||||+|||+||+++++++++|++++|+||+||+++++
T Consensus       417 ~~pYL~RRa~EN~~~~~~~~~er~~l~~El~RR~~~~~  454 (455)
T PLN02681        417 VIPYLLRRAEENRGLLSGSAIDRQLLRKELKRRLKAAV  454 (455)
T ss_pred             hHHHHHHHHhhhhHhHhccHHHHHHHHHHHHhhhcccc
Confidence            99999999999999999999999999999999998876

>KOG0186 consensus Proline oxidase [Amino acid transport and metabolism]	Back alignment and domain information

>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1	Back alignment and domain information

>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	Back alignment and domain information

>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	Back alignment and domain information

>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	Back alignment and domain information

>COG0506 PutA Proline dehydrogenase [Amino acid transport and metabolism]	Back alignment and domain information

>COG0506 PutA Proline dehydrogenase [Amino acid transport and metabolism]	Back alignment and domain information

>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]	Back alignment and domain information

>KOG0186 consensus Proline oxidase [Amino acid transport and metabolism]	Back alignment and domain information

>PF14850 Pro_dh-DNA_bdg: DNA-binding domain of Proline dehydrogenase; PDB: 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A 3ITG_B 3E2R_A 1TJ1_A 1TIW_A	Back alignment and domain information

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed	Back alignment and domain information

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative	Back alignment and domain information

>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed	Back alignment and domain information

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		490
4f9i_A		1026	Crystal Structure Of Proline Utilization A (Puta) F		3e-09
3haz_A		1001	Crystal Structure Of Bifunctional Proline Utilizati		1e-06

>pdb|4F9I|A Chain A, Crystal Structure Of Proline Utilization A (Puta) From Geobacter Sulfurreducens Pca Length = 1026

Back alignment and structure

Iteration: 1

Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 23/215 (10%) Query: 258 RLQKLCQECLEANVPLTVDAE---------DTFVQPAIDYLTYNAALSNNKAGKPIVYNT 308 R++++ ++ +E N L +D E + F + ++Y Y P + Sbjct: 248 RMRRIFKKVMELNGFLCIDMESYRHKEIILEVFRRLKLEYRDY-----------PHLGIV 296 Query: 309 IQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETH 368 +QAYLKD + L A++ V + +LV+GAY E+ A ++ P+ E+ Sbjct: 297 LQAYLKDNDKDLDDLLAWAKEHKVQISVRLVKGAYWDYETVKAKQNDWEVPVWTIKAESD 356 Query: 369 ACYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEA 428 A Y A +LE A A+HN+ + A +L + D + EF LYGMAE Sbjct: 357 AAYERQARKILENHQICHFAC--ASHNIRTISAVMEMARELNVPED-RYEFQVLYGMAEP 413 Query: 429 LSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEEN 463 + G+ ++ Y P+G + + YL+RR EN Sbjct: 414 VRKGILKVAGRIRLYAPYGNMVPGMGYLVRRLLEN 448

PyMOL of 4f9i

>pdb|3HAZ|A Chain A, Crystal Structure Of Bifunctional Proline Utilization A (Puta) Protein Length = 1001

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		490
4f9i_A		1026	Proline dehydrogenase/delta-1-pyrroline-5-carboxy	9e-29
2ekg_A		327	Proline dehydrogenase/delta-1-pyrroline-5-carboxy	4e-24
3e2q_A		551	Proline oxidase, proline dehydrogenase; proline ut	8e-24
1k87_A		669	PUTA, proline dehydrogenase, proline dehydroge; mu	1e-23
3haz_A		1001	Proline dehydrogenase; proline utilization A, PUTA	5e-21

>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens} Length = 1026	Back alignment and structure

 Score =  119 bits (301), Expect = 9e-29
 Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 27/217 (12%)

Query: 258 RLQKLCQECLEANVPLTVDAE---------DTFVQPAIDYLTYNAALSNNKAGKPIVYNT 308
           R++++ ++ +E N  L +D E         + F +  ++Y  Y         G  IV   
Sbjct: 248 RMRRIFKKVMELNGFLCIDMESYRHKEIILEVFRRLKLEYRDYP------HLG--IV--- 296

Query: 309 IQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETH 368
           +QAYLKD  + L      A++  V +  +LV+GAY   E+  A    ++ P+     E+ 
Sbjct: 297 LQAYLKDNDKDLDDLLAWAKEHKVQISVRLVKGAYWDYETVKAKQNDWEVPVWTIKAESD 356

Query: 369 ACYNDCASYMLEKIADGSGAVVL--ATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMA 426
           A Y   A  +LE             A+HN+ +       A +L +  D+  EF  LYGMA
Sbjct: 357 AAYERQARKILEN----HQICHFACASHNIRTISAVMEMARELNVPEDR-YEFQVLYGMA 411

Query: 427 EALSYGLRNAGFQVSKYMPFGPVDKIIPYLLRRAEEN 463
           E +  G+     ++  Y P+G +   + YL+RR  EN
Sbjct: 412 EPVRKGILKVAGRIRLYAPYGNMVPGMGYLVRRLLEN 448

PyMOL of 4f9i

>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; flavoenzyme, prodh, beta-alpha-barrel inhibitor, inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus thermophilus} PDB: 2g37_A* Length = 327	Back alignment and structure

>3e2q_A Proline oxidase, proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, DNA-binding, FAD, flavoprotein, multifunctional enzyme, NAD; HET: FAD 1PE; 1.75A {Escherichia coli} PDB: 3e2r_A* 3e2s_A* 1tj2_A* 1tiw_A* 1tj0_A* 1tj1_A* 2fzm_A* 2fzn_A* 3itg_A* Length = 551	Back alignment and structure

>1k87_A PUTA, proline dehydrogenase, proline dehydroge; multi-functional protein, transcripti repressor, shuttling, dimer, oxidoreductase; HET: FAD 1PE; 2.00A {Escherichia coli} SCOP: a.176.1.1 c.1.23.2 Length = 669	Back alignment and structure

>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110} Length = 1001	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		490
1k87_A		669	PUTA, proline dehydrogenase, proline dehydroge; mu	100.0
3e2q_A		551	Proline oxidase, proline dehydrogenase; proline ut	100.0
3haz_A		1001	Proline dehydrogenase; proline utilization A, PUTA	100.0
4h6q_A		312	Proline dehydrogenase; BETA8-alpha8-barrel, flavoe	100.0
2ekg_A		327	Proline dehydrogenase/delta-1-pyrroline-5-carboxy	100.0
4f9i_A		1026	Proline dehydrogenase/delta-1-pyrroline-5-carboxy	100.0
1i60_A		278	IOLI protein; beta barrel, structural genomics, PS	88.11
3cqj_A		295	L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre	84.62
3dx5_A		286	Uncharacterized protein ASBF; beta-alpha barrel, p	84.2
3tva_A		290	Xylose isomerase domain protein TIM barrel; struct	84.08
3u0h_A		281	Xylose isomerase domain protein; structural genomi	83.48
3kws_A		287	Putative sugar isomerase; structural genomics, joi	80.21

>1k87_A PUTA, proline dehydrogenase, proline dehydroge; multi-functional protein, transcripti repressor, shuttling, dimer, oxidoreductase; HET: FAD 1PE; 2.00A {Escherichia coli} SCOP: a.176.1.1 c.1.23.2	Back alignment and structure

Probab=100.00  E-value=1.2e-80  Score=680.57  Aligned_cols=359  Identities=21%  Similarity=0.222  Sum_probs=314.1

Q ss_pred             ccCChhhHhhcCCHHHHHHHHHhhhhccCcchhhhhHHhhhhhhcCchHHhHHHHHHHHHHhhcceeccCChHHHHHHHH
Q 042033           59 DINDHEKLFSLLSTTKLIRAAANLHLAAVEPLVDFGVWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGENAPEATDCVR  138 (490)
Q Consensus        59 ~F~d~~~af~~~st~~Llrs~~v~~l~s~~~lv~~~~~ll~~~~~~~~~~~~~~~~~~k~Tf~~~FvaGEt~~e~~~~i~  138 (490)
                      .|++.+++|.++|||+|++++.|+++|+.+.+++....+++.  .+.|+++.++...|| +||+|||+|||++|++++++
T Consensus       197 h~~~s~s~~~~astw~L~~t~~v~~~~~~~~~~~~l~~ll~~--~~~p~ir~~v~~~mr-~~~~qFVaGet~~ea~~~i~  273 (669)
T 1k87_A          197 HIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGK--SGEPLIRKGVDMAMR-LMGEQFVTGETIAEALANAR  273 (669)
T ss_dssp             ---CCCTTTTSTTHHHHHSCC------CHHHHHHHHHHHTTT--TCHHHHHHHHHHHHH-HHHGGGCSBSSHHHHHHHHH
T ss_pred             HhCCCchhhHhHHHHHHHHhhhhhhccccccHHHHHHHHHHh--cccHHHHHHHHHHHH-HhhCeeeCCCCHHHHHHHHH
Confidence            588999999999999999999999999988899998888875  688888888888877 89999999999999999999


Q ss_pred             HHHhCCceeecccccccCCChHHHHHHHHHHHHHHHHhhCCCCC----CCCeEEEEeCCcCchhHHHHhHHHhhhhhcCC
Q 042033          139 RVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPE----SASFVIAKISAICPMSLLQRVSDLLRWQQRDP  214 (490)
Q Consensus       139 ~L~~~Gi~~iLdy~~E~~~~~~~~d~~~~~~l~~I~~~~~~~~~----~~~~vsvKlTaLg~~~ll~~~s~~l~~~~~~~  214 (490)
                      +|++.|++++|||+||++.++++|+++++.|+++|+.++....+    ..++||||+||||+..     +          
T Consensus       274 ~L~~~G~~~slD~LGEa~~t~~eA~~~~~~y~~~I~~i~~~~~~~~~~~~~~VSVKlSaLg~~~-----~----------  338 (669)
T 1k87_A          274 KLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRY-----S----------  338 (669)
T ss_dssp             HHHTTTCEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHSCEEEECGGGTSTTG-----G----------
T ss_pred             HHHhCCCeEEEEeeccccCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCeEEEecccccccc-----c----------
Confidence            99999999999999999999999999999999999987643211    2569999999999631     0          


Q ss_pred             CCCCCcccCCCCCccCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccCchhHHHHHHHHHH
Q 042033          215 SFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAA  294 (490)
Q Consensus       215 ~~~~~~~~~~l~~~~~~~p~~~~~~~~~~L~~~e~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s~~q~aId~~~~~l~  294 (490)
                                                  .  .+++..++.+++|+++||++|+++||+|+||||+++++    .++++++
T Consensus       339 ----------------------------~--~~~~~~~~~l~~rl~~L~~~A~~~gv~v~IDAEe~~~~----~lTLdl~  384 (669)
T 1k87_A          339 ----------------------------R--AQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRL----EISLDLL  384 (669)
T ss_dssp             ----------------------------G--CCHHHHHHHHHHHHHHHHHHHHHHTCCEEECCCCGGGH----HHHHHHH
T ss_pred             ----------------------------h--hhhhhHHHHHHHHHHHHHHHHHHcCCEEEEeCCCcchh----HHHHHHH
Confidence                                        0  12446788999999999999999999999999999985    3677788


Q ss_pred             HhcCcC----CCCceeeeehhcchhhHHHHHHHHHHHHHcCCCceeEEeccCCCchhhHHHhhcCCCC-CCccCHHHHHH
Q 042033          295 LSNNKA----GKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDS-PIHNSIQETHA  369 (490)
Q Consensus       295 ~~~N~~----~~p~V~~T~QaYLk~s~~~L~~~l~~A~~~g~~~gvKLVRGAY~e~E~~~A~~~G~~~-Pi~~tk~~Td~  369 (490)
                      ++||++    .++.||+|||||||||+++|++++++|++.|+++||||||||||++|+++|++.||++ |||++|++||.
T Consensus       385 ~~l~~~~~~~~~~~vGivlQAYLkrt~~~l~~l~~~A~~~G~~l~VRLVKGAY~e~E~~~Aq~~G~~~~Pv~~~K~~TD~  464 (669)
T 1k87_A          385 EKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDV  464 (669)
T ss_dssp             HHHTTCGGGTTCCCEEEEEETTBTTHHHHHHHHHHHHHHTTSCEEEEEECCSCHHHHHHHHHHHTCSSCSBCSSHHHHHH
T ss_pred             HHHhcCcccccCCCceEEEechhhccHHHHHHHHHHHHHcCCCceEEEecCCCCchHHHHHHHcCCCCCCCcCCHHHHHH
Confidence            889863    2677889999999999999999999999999999999999999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCcEEEeCCChHHHHHHHHHHHHhCCCCCCceEEeecccCChHHHHHHHh------CCCCCeeE
Q 042033          370 CYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSYGLRN------AGFQVSKY  443 (490)
Q Consensus       370 ~Y~~~~~~ll~~~~~~~~~~~vATHN~~si~~a~~~~~~~gi~~~~~veF~qL~GM~D~ls~~L~~------~G~~V~kY  443 (490)
                      ||++|+++||++  .+.++++|||||+.||..+.+++.+ |++ .+.|||||||||+|++++.|++      .||+||||
T Consensus       465 ~Y~~~~~~lL~~--~~~i~p~~ATHN~~sia~a~~la~~-~~~-~~~~EFqqL~GM~d~l~~~L~~~~~~~~~G~~vr~Y  540 (669)
T 1k87_A          465 SYLACAKKLLAV--PNLIYPQFATHNAHTLAAIYQLAGQ-NYY-PGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIY  540 (669)
T ss_dssp             HHHHHHHHHHTC--TTTEEEEEECCCHHHHHHHHHHTCS-SCC-GGGCEEEEETTTSHHHHTTTSSCGGGTCCCCCEEEE
T ss_pred             HHHHHHHHHHcC--CCCeeeeeccCCHHHHHHHHHHHHc-CCC-CCcEEEeccCCCCHHHHHHHHhhcccccCCCCeEEE
Confidence            999999999984  2346899999999999999988865 665 3589999999999999999998      79999999


Q ss_pred             eeccCccccHHHHHHHHHhhhccccccHHHHHH
Q 042033          444 MPFGPVDKIIPYLLRRAEENRGFLSASNLDRQL  476 (490)
Q Consensus       444 vPyG~~~e~lpYL~RRa~EN~~~l~~~~~e~~l  476 (490)
                      +|||++++|||||+||++||+   ++++|.++.
T Consensus       541 vP~G~~~d~l~YLvRRl~EN~---an~sFv~~~  570 (669)
T 1k87_A          541 APVGTHETLLAYLVRRLLENG---ANTSFVNRI  570 (669)
T ss_dssp             EEECCGGGTHHHHHHHHHHHH---CTTSHHHHT
T ss_pred             eeCCchHHHHHHHHHHHHhcc---chhHHHHHh
Confidence            999999999999999999999   788887764

PyMOL of 1k87

>3e2q_A Proline oxidase, proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, DNA-binding, FAD, flavoprotein, multifunctional enzyme, NAD; HET: FAD 1PE; 1.75A {Escherichia coli} PDB: 3e2r_A* 3e2s_A* 1tj2_A* 1tiw_A* 1tj0_A* 1tj1_A* 2fzm_A* 2fzn_A* 3itg_A*	Back alignment and structure

>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}	Back alignment and structure

>4h6q_A Proline dehydrogenase; BETA8-alpha8-barrel, flavoenzyme, oxidoreductase; HET: FAD; 1.36A {Deinococcus radiodurans} PDB: 4h6r_A*	Back alignment and structure

>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; flavoenzyme, prodh, beta-alpha-barrel inhibitor, inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus thermophilus} PDB: 2g37_A*	Back alignment and structure

>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}	Back alignment and structure

>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A	Back alignment and structure

>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A	Back alignment and structure

>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}	Back alignment and structure

>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}	Back alignment and structure

>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		490
d1tj1a2		349	c.1.23.2 (A:262-610) Proline dehydrohenase domain	9e-42

>d1tj1a2 c.1.23.2 (A:262-610) Proline dehydrohenase domain of bifunctional PutA protein {Escherichia coli [TaxId: 562]} Length = 349	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FAD-linked oxidoreductase
family: Proline dehydrohenase domain of bifunctional PutA protein
domain: Proline dehydrohenase domain of bifunctional PutA protein
species: Escherichia coli [TaxId: 562]

 Score =  150 bits (379), Expect = 9e-42
 Identities = 67/344 (19%), Positives = 109/344 (31%), Gaps = 52/344 (15%)

Query: 127 GENAPEATDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPESASF 186
           GE   EA    R++ + G R       E     ++ +  +  + Q + +          +
Sbjct: 1   GETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIY 60

Query: 187 VIAKISAICPMSLLQRVSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTL 246
               IS                                       S L+     P     
Sbjct: 61  EGPGIS------------------------------------IKLSALH-----PRYSRA 79

Query: 247 QEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFVQPAIDYLTYNAALSNNKAGKPIVY 306
           Q +  ++  + RL+ L     + ++ + +DAE++        L          AG   + 
Sbjct: 80  QYDRVMEELYPRLKSLTLLARQYDIGINIDAEESDRLEISLDLLEKLCFEPELAGWNGIG 139

Query: 307 NTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGF-DSPIHNSIQ 365
             IQAY K     +    + A +    +  +LV+GAY  SE K A   G    P++    
Sbjct: 140 FVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKV 199

Query: 366 ETHACYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGM 425
            T   Y  CA  +L            ATHN  +       A         + EF  L+GM
Sbjct: 200 YTDVSYLACAKKLL--AVPNLIYPQFATHNAHTLAAIYQLAGQNYY--PGQYEFQCLHGM 255

Query: 426 AEALSYGLRN------AGFQVSKYMPFGPVDKIIPYLLRRAEEN 463
            E L   +               Y P G  + ++ YL+RR  EN
Sbjct: 256 GEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLEN 299

PyMOL of d1tj1a2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		490
d1tj1a2		349	Proline dehydrohenase domain of bifunctional PutA	100.0
d1tj1a1		173	N-terminal domain of bifunctional PutA protein {Es	93.93
d1i60a_		278	Hypothetical protein IolI {Bacillus subtilis [TaxI	85.5

>d1tj1a2 c.1.23.2 (A:262-610) Proline dehydrohenase domain of bifunctional PutA protein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FAD-linked oxidoreductase
family: Proline dehydrohenase domain of bifunctional PutA protein
domain: Proline dehydrohenase domain of bifunctional PutA protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-72  Score=578.22  Aligned_cols=298  Identities=22%  Similarity=0.246  Sum_probs=263.0

Q ss_pred             cCChHHHHHHHHHHHhCCceeecccccccCCChHHHHHHHHHHHHHHHHhhCCCCC----CCCeEEEEeCCcCchhHHHH
Q 042033          127 GENAPEATDCVRRVNDAGLRGMLVYAVEHTDDVSECEQNLQGFLQTVQSAKSLPPE----SASFVIAKISAICPMSLLQR  202 (490)
Q Consensus       127 GEt~~e~~~~i~~L~~~Gi~~iLdy~~E~~~~~~~~d~~~~~~l~~I~~~~~~~~~----~~~~vsvKlTaLg~~~ll~~  202 (490)
                      |||++||++++++|++.|++++|||+||++.++++++.+.+.|+++|+.++.....    ..++||||+|++|+...   
T Consensus         1 GEti~ea~~~~~~L~~~G~~~slD~LGE~v~~~~ea~~~~~~y~~~I~~i~~~~~~~~~~~~~~iSiKlSalg~~~~---   77 (349)
T d1tj1a2           1 GETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYS---   77 (349)
T ss_dssp             BSSHHHHHHTCHHHHTTTEEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHHHTTCHHHHSCEEEECHHHHSTTGG---
T ss_pred             CCCHHHHHHHHHHHHhCCCEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHhccccCCCcCCceEEehhhcCCccc---
Confidence            99999999999999999999999999999999999999999999999987532211    13589999999985200   


Q ss_pred             hHHHhhhhhcCCCCCCCcccCCCCCccCCCcccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccCc
Q 042033          203 VSDLLRWQQRDPSFNLPWKLNNFPLFSDCSPLYHTLQKPEPLTLQEENELQSAHQRLQKLCQECLEANVPLTVDAEDTFV  282 (490)
Q Consensus       203 ~s~~l~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~L~~~e~~~~~~~~~rl~~i~~~A~~~gv~v~IDAE~s~~  282 (490)
                                                              +  ...+..++.+.+|+.+||+.|+++||+|+||||++|+
T Consensus        78 ----------------------------------------~--~~~e~~~~~~~~rl~~i~~~A~~~~v~v~IDaEe~~~  115 (349)
T d1tj1a2          78 ----------------------------------------R--AQYDRVMEELYPRLKSLTLLARQYDIGINIDAEESDR  115 (349)
T ss_dssp             ----------------------------------------G--CCHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCCGGG
T ss_pred             ----------------------------------------h--hhHHHHHHHHHHHHHHHHHHHHhcCCEEEecchhHHH
Confidence                                                    0  1123467889999999999999999999999999997


Q ss_pred             hh-HHHHHHHHHHHhcCcCCCCceeeeehhcchhhHHHHHHHHHHHHHcCCCceeEEeccCCCchhhHHHhhcCCCC-CC
Q 042033          283 QP-AIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDS-PI  360 (490)
Q Consensus       283 q~-aId~~~~~l~~~~N~~~~p~V~~T~QaYLk~s~~~L~~~l~~A~~~g~~~gvKLVRGAY~e~E~~~A~~~G~~~-Pi  360 (490)
                      |+ +++.+...++.++| .++|+||+||||||||++++|++++++|+++|+++||||||||||++|+++|+..||++ |+
T Consensus       116 ~~~~~~l~~~~~~~~~~-~~~~~vg~tlQaYLkrs~~~l~~l~~~a~~~~~~lgvRLVRGAY~e~E~~~a~~~g~~~~Pv  194 (349)
T d1tj1a2         116 LEISLDLLEKLCFEPEL-AGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPV  194 (349)
T ss_dssp             HHHHHHHHHHHHTCGGG-TTCCCEEEEEETTBTTHHHHHHHHHHHHHHTTSCEEEEEECCSCHHHHHHHHHHHTCSSCSB
T ss_pred             HHHHHHHHHHHhhchhh-ccCccceeeeHhhhhccHHHHHHHHhhhhcchhccceeeecCccccccHHHHHHcCCCCCCc
Confidence            66 56666554445566 48999999999999999999999999999999999999999999999999999999995 99


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCCChHHHHHHHHHHHHhCCCCCCceEEeecccCChHHHHHHHhC----
Q 042033          361 HNSIQETHACYNDCASYMLEKIADGSGAVVLATHNVESGQLAAAKATDLGIKGDQKLEFAQLYGMAEALSYGLRNA----  436 (490)
Q Consensus       361 ~~tk~~Td~~Y~~~~~~ll~~~~~~~~~~~vATHN~~si~~a~~~~~~~gi~~~~~veF~qL~GM~D~ls~~L~~~----  436 (490)
                      |++|++||.+|+.|+++++++.  +.++++|||||+.||..+.+++.+.+++  ++++|||||||+|++++.|++.    
T Consensus       195 ~~~k~~td~~y~~~~~~ll~~~--~~~~~~vATHN~~si~~~~~~~~~~~~~--~~~ef~~L~Gm~d~~~~~L~~~~~~~  270 (349)
T d1tj1a2         195 YTRKVYTDVSYLACAKKLLAVP--NLIYPQFATHNAHTLAAIYQLAGQNYYP--GQYEFQCLHGMGEPLYEQVTGKVADG  270 (349)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTCT--TTEEEEEECCCHHHHHHHHHHTCSSCCT--TSCEEEEETTTSHHHHTTTSSCGGGT
T ss_pred             cchHHHhhHHHHHHHHHhhccc--cccceeeccCCHHHHHHHHHHHHhcCCC--cceeHHHHhcccHHHHHHHHHHhhcc
Confidence            9999999999999999999752  2358999999999999999998887774  5899999999999999999986    


Q ss_pred             --CCCCeeEeeccCccccHHHHHHHHHhhhccccccHHHHHHH
Q 042033          437 --GFQVSKYMPFGPVDKIIPYLLRRAEENRGFLSASNLDRQLM  477 (490)
Q Consensus       437 --G~~V~kYvPyG~~~e~lpYL~RRa~EN~~~l~~~~~e~~ll  477 (490)
                        ||+|+||+||||+++|||||+|||+||+   ++++|.++.+
T Consensus       271 ~~g~~v~~YvP~G~~~e~~pYL~RRl~EN~---an~~F~~~~~  310 (349)
T d1tj1a2         271 KLNRPCRIYAPVGTHETLLAYLVRRLLENG---ANTSFVNRIA  310 (349)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHHH---CTTSHHHHTT
T ss_pred             cCCcceEEEEeecchHHhHHHHHHHHhhcc---chHHHHHHhc
Confidence              9999999999999999999999999999   8888877643

PyMOL of d1tj1a2

>d1tj1a1 a.176.1.1 (A:89-261) N-terminal domain of bifunctional PutA protein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure