Citrus Sinensis ID: 042059

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MASSSHPLTIQQPLSLTSKSSTYKLRSFGFRVNCSLDNESCSFGVSDSSSEPRKPKESRVLISRRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPNS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccEEcccccEEEEEEcccccEEcccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEcccccccEEEEccccccEEEEccccccccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHccccccccEEEEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHcccccccccccccccccEEccccccccEEEEEEccccccEEEEEEccccccccEEEccccccccccccccccccHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
massshpltiqqplsltsksstyklrSFGFRvncsldnescsfgvsdssseprkpkesrvlisRRKCLTCICSTIAlisnsgslvsvpeaialdgkerpvcrncggsgavlcdmcggtgkwkALNRKRAKDvyeftecpncygrgklvcpvclgtglpnnkgllrrpDARKLLDkmyngrllpns
Flexible Loop (DISEMBL)
massshpltiqqplsltskssTYKLRSFGFRVNCSLDNESCsfgvsdssseprkpkesrvlisrrkCLTCICSTialisnsgslvsVPEAIALDGKERPVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEftecpncygrgKLVCPVCLGTglpnnkgllrrpdarklldkmyngrllpns
Low Complexity Region (SEG)
MASSSHPLTIQQPlsltsksstyklrsFGFRVNCSLDNESCSFGVSDSSSEPRKPKESRVLISRRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPNS
Disordered region (IsUnstruct)
**********************YKLRSFGFRVNCSLD**********************VLISRRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLR********************
Disordered Region (DISOPRED)
********************************************************************TCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVLCDMCGGTGKWK**********YEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKM**G******
Disordered Region (DISEMBL)
***********QPLSLTSKSSTYKLRSFGFRVNCSLDNES********************LISRRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPNS
Disordered Region (DISPRO)
***********Q*LSLTSKSSTYKLRSFGFRVNCSL************************LISRRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSHPLTIQQPLSLTSKSSTYKLRSFGFRVNCSLDNESCSFGVSDSSSEPRKPKESRVLISRRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
B5YAR4	390	Chaperone protein DnaJ OS	yes	no	0.313	0.148	0.359	0.0002
Q7V9C8	378	Chaperone protein DnaJ OS	yes	no	0.4	0.195	0.311	0.0007

>sp|B5YAR4|DNAJ_DICT6 Chaperone protein DnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dnaJ PE=3 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 99  PVCRNCG---GSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVC 152
           P C+  G   G+  V CDMC GTG+ + + +       + T CP C+G G+++   C  C
Sbjct: 160 PTCKGKGTEPGTNPVKCDMCNGTGQIRNMRQTPFGQFVQITTCPKCHGTGQIIINPCHEC 219

Query: 153 LGTG 156
            GTG
Sbjct: 220 HGTG 223

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) (taxid: 309799)

>sp|Q7V9C8|DNAJ_PROMM Chaperone protein DnaJ OS=Prochlorococcus marinus (strain MIT 9313) GN=dnaJ PE=3 SV=1

 Score = 43.9 bits (102), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 16/90 (17%)

Query: 92  ALDGKERPV-------CRNCGGSGAVL------CDMCGGTGKWKALNRKRAKDVYEFTEC 138
           A+ G+ER +       C  C G+GA +      C  CGG G+ +   R       +  EC
Sbjct: 130 AVFGQEREIKIPHLETCDTCNGTGAKVGSGPTTCSTCGGVGQVRRATRTPFGSFTQVAEC 189

Query: 139 PNCYGRGKLV---CPVCLGTGLPNNKGLLR 165
           P+C G G+++   CP C G G+   +  LR
Sbjct: 190 PSCEGTGQVIADPCPACAGQGVRQVRKKLR 219

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Prochlorococcus marinus (strain MIT 9313) (taxid: 74547)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
297746419	240	unnamed protein product [Vitis vinifera]	0.962	0.741	0.712	3e-67
225435644	183	PREDICTED: uncharacterized protein LOC10	0.962	0.972	0.712	1e-66
255581672	189	conserved hypothetical protein [Ricinus	0.994	0.973	0.684	7e-66
224052990	193	predicted protein [Populus trichocarpa]	0.929	0.891	0.721	6e-61
388505432	167	unknown [Lotus japonicus]	0.756	0.838	0.808	5e-60
449448800	185	PREDICTED: uncharacterized protein LOC10	0.978	0.978	0.650	3e-58
449503459	184	PREDICTED: uncharacterized LOC101213672	0.978	0.983	0.654	4e-58
351724583	144	uncharacterized protein LOC100305959 [Gl	0.702	0.902	0.804	8e-55
15226849	186	embryo sac development arrest 3 protein	0.983	0.978	0.612	3e-51
356575007	147	PREDICTED: uncharacterized protein LOC10	0.702	0.884	0.763	3e-51

>gi|297746419|emb|CBI16475.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (662), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 129/181 (71%), Positives = 145/181 (80%), Gaps = 3/181 (1%)

Query: 5   SHPLTIQQPLSLTSKSSTYKLRSFGFRVNCSLDNESCSFGVSDSSSEPRKPKESRVLISR 64
           S PLT+    S  SK   +  +S G    CSL+NES + GVSD S+EP K K S  LISR
Sbjct: 63  SSPLTLSAIPSKISKFH-HNSKSVGIHFRCSLENESHTQGVSDHSAEPIKAKGSPALISR 121

Query: 65  RKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVLCDMCGGTGKWKAL 124
           R CLTC+C+T+ LI+ SGS  ++  A  +D KE+PVCRNCGGSG +LCDMCGGTGKWKAL
Sbjct: 122 RSCLTCLCTTMVLINTSGSSATIQNA--MDAKEKPVCRNCGGSGVILCDMCGGTGKWKAL 179

Query: 125 NRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPN 184
           NRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKMYNGRLLPN
Sbjct: 180 NRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRLLPN 239

Query: 185 S 185
           S
Sbjct: 240 S 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435644|ref|XP_002285666.1| PREDICTED: uncharacterized protein LOC100241679 [Vitis vinifera]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/181 (71%), Positives = 145/181 (80%), Gaps = 3/181 (1%)

Query: 5   SHPLTIQQPLSLTSKSSTYKLRSFGFRVNCSLDNESCSFGVSDSSSEPRKPKESRVLISR 64
           S PLT+    S  SK   +  +S G    CSL+NES + GVSD S+EP K K S  LISR
Sbjct: 6   SSPLTLSAIPSKISKFH-HNSKSVGIHFRCSLENESHTQGVSDHSAEPIKAKGSPALISR 64

Query: 65  RKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVLCDMCGGTGKWKAL 124
           R CLTC+C+T+ LI+ SGS  ++  A  +D KE+PVCRNCGGSG +LCDMCGGTGKWKAL
Sbjct: 65  RSCLTCLCTTMVLINTSGSSATIQNA--MDAKEKPVCRNCGGSGVILCDMCGGTGKWKAL 122

Query: 125 NRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPN 184
           NRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKMYNGRLLPN
Sbjct: 123 NRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRLLPN 182

Query: 185 S 185
           S
Sbjct: 183 S 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581672|ref|XP_002531639.1| conserved hypothetical protein [Ricinus communis] gi|223528724|gb|EEF30735.1| conserved hypothetical protein [Ricinus communis]

 Score =  255 bits (651), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 128/187 (68%), Positives = 150/187 (80%), Gaps = 3/187 (1%)

Query: 2   ASSSHPLTIQQPLSLTSKSST---YKLRSFGFRVNCSLDNESCSFGVSDSSSEPRKPKES 58
           +S+SH   I Q LS +SK+S    +  ++   RV  SL++E+C  GVS +S +  K K+S
Sbjct: 3   SSTSHLSAIPQRLSSSSKTSPPHFHNSKAVRIRVRSSLEDENCRSGVSQNSLDSVKNKDS 62

Query: 59  RVLISRRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVLCDMCGGT 118
               SRR C+ C+CST+ LI+N G+ + +P+AIALDGKER VCRNC GSGAVLCDMCGGT
Sbjct: 63  EASTSRRWCVACLCSTMTLITNGGNSMFIPKAIALDGKERAVCRNCAGSGAVLCDMCGGT 122

Query: 119 GKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYN 178
           GKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKMYN
Sbjct: 123 GKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYN 182

Query: 179 GRLLPNS 185
           GRLLP S
Sbjct: 183 GRLLPRS 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052990|ref|XP_002297652.1| predicted protein [Populus trichocarpa] gi|222844910|gb|EEE82457.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (608), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 127/176 (72%), Positives = 145/176 (82%), Gaps = 4/176 (2%)

Query: 14  LSLTSKSSTYKL---RSFGFRVNCSLDNESCSF-GVSDSSSEPRKPKESRVLISRRKCLT 69
           LSL SK S + L   +  G RV  SL++ES S  G  D  S+  K KES++  SRR+CL+
Sbjct: 18  LSLYSKPSQHHLLNVKPVGIRVKSSLEDESSSSSGGFDDPSQSIKMKESQLSTSRRQCLS 77

Query: 70  CICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVLCDMCGGTGKWKALNRKRA 129
           C+CST+ LI  S + +S+P+AIA+DGKERPVCRNC GSGAVLCDMCGGTGKWKALNRKRA
Sbjct: 78  CLCSTLVLIGTSATSISIPKAIAMDGKERPVCRNCLGSGAVLCDMCGGTGKWKALNRKRA 137

Query: 130 KDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPNS 185
           KDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKMYNGR+LP S
Sbjct: 138 KDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRILPGS 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505432|gb|AFK40782.1| unknown [Lotus japonicus]

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 114/141 (80%), Positives = 126/141 (89%), Gaps = 1/141 (0%)

Query: 46  SDSSSEPRKPKESRVL-ISRRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNC 104
           ++SS+    PKE RV+ +SRR+CLTC+CST+ALI +    VSVPEA A DG ERP CRNC
Sbjct: 27  NESSASNHSPKELRVIPVSRRQCLTCLCSTLALIGDYARPVSVPEAAAADGMERPGCRNC 86

Query: 105 GGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLL 164
           GGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTG+PNNKGLL
Sbjct: 87  GGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGVPNNKGLL 146

Query: 165 RRPDARKLLDKMYNGRLLPNS 185
           RRPDA+KLLDKMYNG+LLPNS
Sbjct: 147 RRPDAQKLLDKMYNGKLLPNS 167

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448800|ref|XP_004142153.1| PREDICTED: uncharacterized protein LOC101213672 isoform 1 [Cucumis sativus]

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 123/189 (65%), Positives = 139/189 (73%), Gaps = 8/189 (4%)

Query: 1   MASSSHPLTIQQPLSLTSKS----STYKLRSFGFRVNCSLDNESCSFGVSDSSSEPRKPK 56
           MASSSH   I      +S       +  L+     V  + D+ESCS G S + S+P K  
Sbjct: 1   MASSSHLSAIPLRRPSSSSPPSLSHSANLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGT 60

Query: 57  ESRVLISRRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVLCDMCG 116
           +   LISRR CLTC+CS++ L+ + G  V+   A  +DGK  P CRNCGGSGAVLCDMCG
Sbjct: 61  QK--LISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGK--PACRNCGGSGAVLCDMCG 116

Query: 117 GTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKM 176
           GTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKM
Sbjct: 117 GTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKM 176

Query: 177 YNGRLLPNS 185
           YNGRLLPNS
Sbjct: 177 YNGRLLPNS 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503459|ref|XP_004162013.1| PREDICTED: uncharacterized LOC101213672 [Cucumis sativus]

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 123/188 (65%), Positives = 139/188 (73%), Gaps = 7/188 (3%)

Query: 1   MASSSHPLTIQQPLSLTSKSSTY---KLRSFGFRVNCSLDNESCSFGVSDSSSEPRKPKE 57
           MASSSH   I      +S   +     L+     V  + D+ESCS G S + S+P K  +
Sbjct: 1   MASSSHLSAIPLRRPSSSSPPSLSHSNLKPVVLHVTSNSDDESCSTGDSKTPSKPLKGTQ 60

Query: 58  SRVLISRRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVLCDMCGG 117
              LISRR CLTC+CS++ L+ + G  V+   A  +DGK  P CRNCGGSGAVLCDMCGG
Sbjct: 61  K--LISRRWCLTCLCSSVTLMKSYGGTVTEAIANTMDGK--PACRNCGGSGAVLCDMCGG 116

Query: 118 TGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMY 177
           TGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDAR+LLDKMY
Sbjct: 117 TGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMY 176

Query: 178 NGRLLPNS 185
           NGRLLPNS
Sbjct: 177 NGRLLPNS 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724583|ref|NP_001235527.1| uncharacterized protein LOC100305959 [Glycine max] gi|255627105|gb|ACU13897.1| unknown [Glycine max]

 Score =  218 bits (555), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 107/133 (80%), Positives = 117/133 (87%), Gaps = 3/133 (2%)

Query: 56  KESRVLISRRKCLTCICSTIALISNSGSLVSVPEAIALDGK---ERPVCRNCGGSGAVLC 112
           +E RV +SRR CL+C+CSTI LIS+    + +P+A A DG    E+PVCRNC GSGAVLC
Sbjct: 12  QELRVTVSRRNCLSCLCSTIVLISDCAMPIFLPKASAADGNGIMEKPVCRNCLGSGAVLC 71

Query: 113 DMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKL 172
           DMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRP+ARKL
Sbjct: 72  DMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPEARKL 131

Query: 173 LDKMYNGRLLPNS 185
           LDKMYNGRLLPNS
Sbjct: 132 LDKMYNGRLLPNS 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226849|ref|NP_181032.1| embryo sac development arrest 3 protein [Arabidopsis thaliana] gi|145330358|ref|NP_001078004.1| embryo sac development arrest 3 protein [Arabidopsis thaliana] gi|3033382|gb|AAC12826.1| unknown protein [Arabidopsis thaliana] gi|20466396|gb|AAM20515.1| unknown protein [Arabidopsis thaliana] gi|22136346|gb|AAM91251.1| unknown protein [Arabidopsis thaliana] gi|330253937|gb|AEC09031.1| embryo sac development arrest 3 protein [Arabidopsis thaliana] gi|330253938|gb|AEC09032.1| embryo sac development arrest 3 protein [Arabidopsis thaliana]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/186 (61%), Positives = 132/186 (70%), Gaps = 4/186 (2%)

Query: 2   ASSSHPLTIQQPLS-LTSKSSTYKLRSFGFRVNCSLDNESCSFGVSDSSSEPRKPKESRV 60
           ASSSH   +  P S   S  +  ++R      +C  +    S     SS    K +  + 
Sbjct: 3   ASSSHLFALPSPASPFLSAPNRNRVRVLA--KSCPENQSFDSNDSDSSSETTHKAQGDQK 60

Query: 61  LISRRKCLT-CICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVLCDMCGGTG 119
            +SRR+ +T C+C++ ALISNS + VSV  A ALD K    CRNC GSGAVLCDMCGGTG
Sbjct: 61  SVSRRQWMTACVCASAALISNSYTFVSVQSAAALDKKPGGSCRNCQGSGAVLCDMCGGTG 120

Query: 120 KWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNG 179
           KWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRP AR+LL+KMYNG
Sbjct: 121 KWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPGARELLEKMYNG 180

Query: 180 RLLPNS 185
           RLLP+S
Sbjct: 181 RLLPDS 186

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575007|ref|XP_003555634.1| PREDICTED: uncharacterized protein LOC100806490 [Glycine max]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/131 (76%), Positives = 113/131 (86%), Gaps = 1/131 (0%)

Query: 56  KESRVLISRRKCLTCICSTIALISNSGSLVSVPEAIALDGK-ERPVCRNCGGSGAVLCDM 114
           +E  V +SRR CL+C CST+ LIS+    + VP+A A++G  ++P+CRNC GSGAVL DM
Sbjct: 17  QELSVKVSRRNCLSCFCSTLVLISDCAMPIFVPKASAVNGMMDKPLCRNCLGSGAVLYDM 76

Query: 115 CGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLD 174
           CGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL CPVC GTGLPNNKGLLRRP+ARKLLD
Sbjct: 77  CGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLFCPVCFGTGLPNNKGLLRRPEARKLLD 136

Query: 175 KMYNGRLLPNS 185
           KMYNGRLLPNS
Sbjct: 137 KMYNGRLLPNS 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2044812	186	EDA3 "embryo sac development a	0.983	0.978	0.623	7.8e-55
TAIR|locus:2009482	110	AT1G22630 [Arabidopsis thalian	0.308	0.518	0.396	1e-06
UNIPROTKB|G4N8Z4	59	MGG_17224 "Uncharacterized pro	0.297	0.932	0.363	1.3e-06
UNIPROTKB|J9NTD6	65	GRXCR2 "Uncharacterized protei	0.270	0.769	0.365	8e-05
TAIR|locus:2047426	144	AT2G24860 [Arabidopsis thalian	0.578	0.743	0.288	0.00038
TAIR|locus:2175966	154	AT5G17840 [Arabidopsis thalian	0.372	0.448	0.293	0.00049
TAIR|locus:2152845	315	AT5G06130 [Arabidopsis thalian	0.335	0.196	0.347	0.0006
TAIR|locus:2005585	154	LQY1 "LOW QUANTUM YIELD OF PHO	0.291	0.350	0.368	0.00073

TAIR|locus:2044812 EDA3 "embryo sac development arrest 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 116/186 (62%), Positives = 132/186 (70%)

Query:     2 ASSSHPLTIQQPXXXXXXXXXXXXXXFGFRVNCSLDNESCSFGVSDSSSEP-RKPKESRV 60
             ASSSH   +  P                   +C  +N+S     SDSSSE   K +  + 
Sbjct:     3 ASSSHLFALPSPASPFLSAPNRNRVRV-LAKSCP-ENQSFDSNDSDSSSETTHKAQGDQK 60

Query:    61 LISRRKCLT-CICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAVLCDMCGGTG 119
              +SRR+ +T C+C++ ALISNS + VSV  A ALD K    CRNC GSGAVLCDMCGGTG
Sbjct:    61 SVSRRQWMTACVCASAALISNSYTFVSVQSAAALDKKPGGSCRNCQGSGAVLCDMCGGTG 120

Query:   120 KWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNG 179
             KWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRP AR+LL+KMYNG
Sbjct:   121 KWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPGARELLEKMYNG 180

Query:   180 RLLPNS 185
             RLLP+S
Sbjct:   181 RLLPDS 186

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009561 "megagametogenesis" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

TAIR|locus:2009482 AT1G22630 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 25/63 (39%), Positives = 33/63 (52%)

Query:   101 CRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGL-PN 159
             C  CG  GA+ C  C GTGK    N+K   +++E  +C +C G G   CP C   GL P 
Sbjct:    51 CETCGAKGAIECPGCKGTGK----NKKNG-NMFERWKCFDCQGFGMKSCPKCGKGGLTPE 105

Query:   160 NKG 162
              +G
Sbjct:   106 QRG 108

GO:0009507 "chloroplast" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

UNIPROTKB|G4N8Z4 MGG_17224 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 24/66 (36%), Positives = 32/66 (48%)

Query:    96 KERPVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVY-EFTECPNCYGRGKLVCPVCLG 154
             K+   C +C G+G   C  CGGTG           D++ E   CP+CY RG++ C  C G
Sbjct:     4 KKTETCSSCSGTGQCTCLRCGGTGS----------DIFAECGICPHCYARGQVPCSACGG 53

Query:   155 TGLPNN 160
              G   N
Sbjct:    54 KGEMTN 59

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|J9NTD6 GRXCR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 95 (38.5 bits), Expect = 8.0e-05, P = 8.0e-05
 Identities = 19/52 (36%), Positives = 25/52 (48%)

Query:   101 CRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVC 152
             C  C GSG+  C +C G+ K+  L   R K+ Y    CP C   G   C +C
Sbjct:    14 CFRCRGSGSATCSLCHGS-KFSML-ANRFKESYRALRCPACNENGLQPCQIC 63

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2047426 AT2G24860 [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 0.00038, P = 0.00038
 Identities = 32/111 (28%), Positives = 46/111 (41%)

Query:    50 SEPRKPKESRVLISRRKCLTCICSTIALIS--NSGSLVS-VPEAIALDGKERPV-CRNCG 105
             + PR  K   V + RR   T      A+ S  +S +    + +A  +  +  PV C +C 
Sbjct:    21 NSPRITKLGFVPVVRRFPATTTVKASAVDSPESSSNFAKRMDQAWIISQQPSPVGCSSCN 80

Query:   106 GSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTG 156
               G V C  C GTG +   +    +     T C  C G+G   C  C GTG
Sbjct:    81 SKGHVECKWCAGTGFFILGDNMLCQVPSRNTSCVICSGQGSASCSDCKGTG 131

GO:0005576 "extracellular region" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2175966 AT5G17840 [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00049, P = 0.00049
 Identities = 22/75 (29%), Positives = 34/75 (45%)

Query:    87 VPEAIALDGKERPV-----CRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNC 141
             + E + L   ER +     C  C   GA+LC  C GTG +   +   ++ +     C  C
Sbjct:    77 IEEPVGLSMSEREIGDNQRCTCCEAKGALLCSTCSGTGLYVD-SIMESQGIIVKVRCLGC 135

Query:   142 YGRGKLVCPVCLGTG 156
              G G ++C +C G G
Sbjct:   136 GGSGNIMCKLCGGRG 150

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2152845 AT5G06130 [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 0.00060, P = 0.00060
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query:    96 KERPVCRNCGGSGAVLCDMCGGTGKWKALN---RKRAKD----VYEFTECPNCYGRGKLV 148
             +E+  C+ C G+G + C  C  +G   +++   R RA +    V     C NC G GK++
Sbjct:   233 QEKKRCKYCLGTGYLPCARCSASGVCLSIDPITRPRATNQLMQVATTKRCLNCSGAGKVM 292

Query:   149 CPVCLGTGL 157
             CP CL TG+
Sbjct:   293 CPTCLCTGM 301

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2005585 LQY1 "LOW QUANTUM YIELD OF PHOTOSYSTEM II 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 0.00073, P = 0.00073
 Identities = 21/57 (36%), Positives = 28/57 (49%)

Query:   101 CRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGL 157
             C  C G+GA  C +C G+G          K+V   + C NC G G L C  C G+G+
Sbjct:    87 CFPCNGTGAQKCRLCVGSGNVTVELGGGEKEV---SNCINCDGAGSLTCTTCQGSGV 140


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      185       171   0.00090  108 3  11 22  0.40    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  161 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.06u 0.16s 17.22t   Elapsed:  00:00:00
  Total cpu time:  17.06u 0.16s 17.22t   Elapsed:  00:00:00
  Start:  Mon May 20 19:51:58 2013   End:  Mon May 20 19:51:58 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010206 "photosystem II repair" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	2e-07
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	3e-07
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	9e-07
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	2e-06
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	2e-06
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	5e-06
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	6e-06
COG1107	715	COG1107, COG1107, Archaea-specific RecJ-like exonu	6e-06
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-05
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	2e-05
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	3e-05
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	5e-05
PLN03165	111	PLN03165, PLN03165, chaperone protein dnaJ-related	6e-05
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	7e-05
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	8e-05
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	1e-04
cd10719	65	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H	1e-04
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	2e-04
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	2e-04
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-04
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	4e-04
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	5e-04
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	7e-04
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	0.001
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	0.002

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPV 151
           C  C G+GA        C  CGGTG+               T C  C+GRG+++   CPV
Sbjct: 144 CSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPV 203

Query: 152 CLGTG 156
           C GTG
Sbjct: 204 CSGTG 208

Length = 377

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 26/86 (30%)

Query: 92  ALDGKERPV-------CRNCGGSGA------VLCDMCGGTG-----KWKALNRKRAKDVY 133
           A+ GKE+ V       C  C GSGA      V C  C G+G         L   R +   
Sbjct: 133 AIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQ--- 189

Query: 134 EFTECPNCYGRGKLV---CPVCLGTG 156
               C  C+G GK +   C  C GTG
Sbjct: 190 --VTCDVCHGTGKEIKEPCQTCHGTG 213

Length = 380

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 47.6 bits (114), Expect = 9e-07
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 22/89 (24%)

Query: 85  VSVPEAIALDGKERPV-------CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKD 131
           +++ EA+   G ++ +       C  C GSGA        C  C G+G    +   +   
Sbjct: 124 ITLEEAVF--GVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSG---QVRTVQRTG 178

Query: 132 VYEF-TECPNCYGRGKLV---CPVCLGTG 156
            + F   CP C G GK++   C  C G G
Sbjct: 179 FFSFQQTCPTCNGTGKIIKDPCGKCKGKG 207

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 17/70 (24%)

Query: 100 VCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEF----TECPNCYGRGKLV- 148
            C  C G+GA        C  CGGTG+     R++    + F      CP C G GK++ 
Sbjct: 145 SCETCHGTGAKPGTDPKTCPTCGGTGQ----VRRQQGTPFGFFQQQQTCPTCGGEGKIIK 200

Query: 149 --CPVCLGTG 156
             C  C G G
Sbjct: 201 EPCSTCKGKG 210

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 8/65 (12%)

Query: 100 VCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL---VCPV 151
           +C +C G+GA     + C  C GTG+ + +  +    +   T C  C GRG++    CP 
Sbjct: 151 MCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPR 210

Query: 152 CLGTG 156
           C GTG
Sbjct: 211 CNGTG 215

Length = 365

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 100 VCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CP 150
            C  C GSGA      V C +C GTG+ +         +     C  C+G GK++   C 
Sbjct: 157 KCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCN 216

Query: 151 VCLGTG 156
            C GTG
Sbjct: 217 KCGGTG 222

Length = 386

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 100 VCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CP 150
           +C  C G G       V CD CGG G+ + + R     V     CP C G G+++   C 
Sbjct: 141 LCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCH 200

Query: 151 VCLGTG 156
            C G G
Sbjct: 201 ECAGDG 206

Length = 378

>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 18/74 (24%)

Query: 101 CRNCGGSGAV-----LCDMCGGTGKWKALNRKRAKDVYEFT---------ECPNCYGRGK 146
           C  CGG G +      C +C GTG     + K   ++   T          CP C G+G 
Sbjct: 5   CPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGT 64

Query: 147 ----LVCPVCLGTG 156
                 CP C GTG
Sbjct: 65  VTVYDTCPECGGTG 78

Length = 715

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 26/81 (32%)

Query: 95  GKERPV-------CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFT---EC 138
           G  + +       C  C GSGA        C  C G G      + R +  + FT    C
Sbjct: 132 GVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAG------QVRMQQGF-FTVQQTC 184

Query: 139 PNCYGRGKLV---CPVCLGTG 156
           P C+GRGK++   C  C G G
Sbjct: 185 PTCHGRGKIIKDPCKKCHGQG 205

Length = 371

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 100 VCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CP 150
            C  C GSGA        C  CGG G+ +   R       + +ECP C G G+++   C 
Sbjct: 145 TCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCD 204

Query: 151 VCLGTG 156
            C G G
Sbjct: 205 ACGGQG 210

Length = 374

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPV 151
           C  C G+GA        CD CGGTG+ +             T C  C G GK++   C  
Sbjct: 151 CETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNK 210

Query: 152 CLGTG 156
           C G G
Sbjct: 211 CHGKG 215

Length = 380

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 18/89 (20%)

Query: 85  VSVPEAIALDGKERPV-------CRNCGG------SGAVLCDMCGGTGKWKALNRK-RAK 130
           + V  +  ++G E PV       C +CGG      SG V C  C GTG+ +   R     
Sbjct: 132 IEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGV 191

Query: 131 DVYEFTECPNCYGRGKL---VCPVCLGTG 156
            V E T C  C G GK+    C  C G+G
Sbjct: 192 FVSERT-CERCGGTGKIPGEYCHECGGSG 219

Length = 369

>gnl|CDD|178709 PLN03165, PLN03165, chaperone protein dnaJ-related; Provisional

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 101 CRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGL 157
           C  C G+GA +C  C G+G    +  +      E ++C NC G G L C  C G+G+
Sbjct: 44  CFPCSGTGAQVCRFCVGSG---NVTVELGGGEKEVSKCINCDGAGSLTCTTCQGSGI 97

Length = 111

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 15/67 (22%)

Query: 100 VCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEF-TECPNCYGRGKLV---C 149
            C  C GSG         C  CGG+G+       +++  +   T CP C G GK++   C
Sbjct: 146 TCEECHGSGCEPGTSPTTCPQCGGSGQVT-----QSQGFFSIRTTCPRCRGMGKVIVSPC 200

Query: 150 PVCLGTG 156
             C G G
Sbjct: 201 KTCHGQG 207

Length = 366

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 96  KERPVCRNCGGSGAV-----LCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV-- 148
           K++  C+ C G+G+       C  C G+G+ +  ++         T CP C G G++V  
Sbjct: 161 KKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKD 220

Query: 149 -CPVCLGTGL 157
            CP C G G+
Sbjct: 221 RCPACYGEGI 230

Length = 397

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 100 VCRNC-------GGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---C 149
            C +C       GG     C  C G G  +A  R     V     CP C G G+++   C
Sbjct: 141 ECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPC 200

Query: 150 PVCLGTG 156
            VC G G
Sbjct: 201 TVCRGRG 207

Length = 371

>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPV 151
           C  C GSGA        C  CGG+G+ + +           T CP C G GK++   CP 
Sbjct: 1   CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIKDPCPK 60

Query: 152 CLGTG 156
           C G G
Sbjct: 61  CKGKG 65

Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding. Length = 65

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 99  PVC---RNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVC 152
           PVC   R   GS    C  CGGTG+ K +       +   T CP+C G GK+V   C  C
Sbjct: 150 PVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNC 209

Query: 153 LGTGL 157
            G G+
Sbjct: 210 HGKGV 214

Length = 378

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 22/82 (26%)

Query: 92  ALDGKERPV-------CRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEFTE- 137
           A+DG   P+       C  C G+GA       +C  C GTG+       R    +  +E 
Sbjct: 153 AIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQ-----VSRNSGGFSLSEP 207

Query: 138 CPNCYGRGKLV---CPVCLGTG 156
           CP+C GRG +    C VC G+G
Sbjct: 208 CPDCKGRGLIADDPCLVCKGSG 229

Length = 389

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 15/67 (22%)

Query: 100 VCRNCGGSGAV------LCDMCGGTGKWKALNRKRAKDVYEF-TECPNCYGRGKLV---C 149
            C +CGGSGA        C  CGG+G+      ++++  ++    CP C G G+++   C
Sbjct: 146 TCDDCGGSGAAPGTSPETCRHCGGSGQ-----VRQSQGFFQIAVPCPVCRGEGRVITHPC 200

Query: 150 PVCLGTG 156
           P C G+G
Sbjct: 201 PKCKGSG 207

Length = 373

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 96  KERPVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV- 148
           K+   C +C G+GA        C  C G+G    +       +   + CP C G GK++ 
Sbjct: 152 KKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK 211

Query: 149 --CPVCLGTGL 157
             C  C G G+
Sbjct: 212 KKCKKCGGEGI 222

Length = 386

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 26/86 (30%)

Query: 92  ALDGKERPV-------CRNCGGSGA------VLCDMCGGTGKWKA-----LNRKRAKDVY 133
           A+ GKE+ +       C  C GSGA        C  CGG+G+          R   +   
Sbjct: 130 AVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQT- 188

Query: 134 EFTECPNCYGRGKLV---CPVCLGTG 156
               CP+C G G+ +   CP C G G
Sbjct: 189 ----CPHCNGTGQEIKEKCPTCHGKG 210

Length = 376

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 38.8 bits (90), Expect = 7e-04
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 15/67 (22%)

Query: 101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEF-TECPNCYGRGKLV---CP 150
           C +C GSGA        C  CGG+G+ +     R +  +   T CP C G+G ++   C 
Sbjct: 153 CVDCNGSGASKGSSPTTCPDCGGSGQIR-----RTQGFFSVATTCPTCRGKGTVISNPCK 207

Query: 151 VCLGTGL 157
            C G GL
Sbjct: 208 TCGGQGL 214

Length = 372

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 15/66 (22%)

Query: 101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTE-CPNCYGRGKLV---CP 150
           C  C GSGA       +C  C G+G    ++R +    + F+E C +C G G ++   C 
Sbjct: 176 CTTCHGSGARPGTSPKVCPTCNGSG---VISRNQG--AFGFSEPCTDCRGTGSIIEDPCE 230

Query: 151 VCLGTG 156
            C GTG
Sbjct: 231 ECKGTG 236

Length = 392

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 12/66 (18%)

Query: 100 VCRNCGG------SGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL--VCPV 151
            C  CGG      SG  +C  CGG+G+      +R         CP C G G L   C  
Sbjct: 158 PCEACGGTGYDPGSGEKVCPTCGGSGE----IYQRGGFFRISQTCPTCGGEGVLREPCSK 213

Query: 152 CLGTGL 157
           C G GL
Sbjct: 214 CNGRGL 219

Length = 382

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.75
PRK14282	369	chaperone protein DnaJ; Provisional	99.69
PRK14298	377	chaperone protein DnaJ; Provisional	99.69
PRK14278	378	chaperone protein DnaJ; Provisional	99.68
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.68
PRK14280	376	chaperone protein DnaJ; Provisional	99.67
PRK14276	380	chaperone protein DnaJ; Provisional	99.67
PRK14277	386	chaperone protein DnaJ; Provisional	99.67
PRK14281	397	chaperone protein DnaJ; Provisional	99.67
PRK14296	372	chaperone protein DnaJ; Provisional	99.66
PRK14297	380	chaperone protein DnaJ; Provisional	99.66
PRK14287	371	chaperone protein DnaJ; Provisional	99.64
PRK14289	386	chaperone protein DnaJ; Provisional	99.64
PRK14279	392	chaperone protein DnaJ; Provisional	99.64
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.63
PRK14284	391	chaperone protein DnaJ; Provisional	99.62
PRK14285	365	chaperone protein DnaJ; Provisional	99.62
PRK14286	372	chaperone protein DnaJ; Provisional	99.62
PRK10767	371	chaperone protein DnaJ; Provisional	99.61
PRK14293	374	chaperone protein DnaJ; Provisional	99.61
PRK14295	389	chaperone protein DnaJ; Provisional	99.61
PRK14301	373	chaperone protein DnaJ; Provisional	99.61
PRK14288	369	chaperone protein DnaJ; Provisional	99.6
PRK14300	372	chaperone protein DnaJ; Provisional	99.6
PRK14294	366	chaperone protein DnaJ; Provisional	99.59
PRK14283	378	chaperone protein DnaJ; Provisional	99.59
PRK14292	371	chaperone protein DnaJ; Provisional	99.57
PRK14290	365	chaperone protein DnaJ; Provisional	99.57
PRK14291	382	chaperone protein DnaJ; Provisional	99.56
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.4
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.27
PLN03165	111	chaperone protein dnaJ-related; Provisional	99.12
KOG2813	406	consensus Predicted molecular chaperone, contains	97.98
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.63
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	97.54
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.52
KOG2813	406	consensus Predicted molecular chaperone, contains	97.48
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.41
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.77
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.54
PRK14300	372	chaperone protein DnaJ; Provisional	96.32
PRK14296	372	chaperone protein DnaJ; Provisional	96.31
PRK14278	378	chaperone protein DnaJ; Provisional	96.29
PRK14279	392	chaperone protein DnaJ; Provisional	96.26
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	96.23
PRK14298	377	chaperone protein DnaJ; Provisional	96.23
PRK14297	380	chaperone protein DnaJ; Provisional	96.21
PRK14301	373	chaperone protein DnaJ; Provisional	96.17
PRK14286	372	chaperone protein DnaJ; Provisional	96.16
PRK14285	365	chaperone protein DnaJ; Provisional	96.1
PRK14288	369	chaperone protein DnaJ; Provisional	96.09
PRK14295	389	chaperone protein DnaJ; Provisional	96.07
PRK14284	391	chaperone protein DnaJ; Provisional	96.06
PRK14282	369	chaperone protein DnaJ; Provisional	96.05
PRK10767	371	chaperone protein DnaJ; Provisional	96.04
PRK14280	376	chaperone protein DnaJ; Provisional	96.03
PRK14294	366	chaperone protein DnaJ; Provisional	95.99
PRK14276	380	chaperone protein DnaJ; Provisional	95.91
PRK14277	386	chaperone protein DnaJ; Provisional	95.9
PRK14290	365	chaperone protein DnaJ; Provisional	95.9
PTZ00037	421	DnaJ_C chaperone protein; Provisional	95.81
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	95.8
PRK14281	397	chaperone protein DnaJ; Provisional	95.79
PRK14289	386	chaperone protein DnaJ; Provisional	95.73
PLN03165	111	chaperone protein dnaJ-related; Provisional	95.65
PRK14293	374	chaperone protein DnaJ; Provisional	95.61
PRK14287	371	chaperone protein DnaJ; Provisional	95.35
PRK14283	378	chaperone protein DnaJ; Provisional	95.26
PRK14291	382	chaperone protein DnaJ; Provisional	95.11
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	95.08
PRK14292	371	chaperone protein DnaJ; Provisional	95.05
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.04
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	87.91
PRK14892	99	putative transcription elongation factor Elf1; Pro	86.31

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=2.3e-18  Score=155.71  Aligned_cols=101  Identities=25%  Similarity=0.485  Sum_probs=91.7

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.+|.|+.+.|+|+|+|||+|.++       +.|..|+|+|+      .+|+.|+|+|.+...+++  |.++.+++|+.|
T Consensus       112 ~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C  189 (371)
T COG0484         112 PRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTC  189 (371)
T ss_pred             cccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCC
Confidence            579999999999999999999998       99999999987      799999999999887766  888899999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      +|+|+++   |+.|+|.|++++++.|.+    +|..++.+|+-
T Consensus       190 ~G~G~~i~~pC~~C~G~G~v~~~~~i~V----~IPaGv~~g~~  228 (371)
T COG0484         190 NGTGKIIKDPCGKCKGKGRVKKKKSISV----NIPAGVDDGDR  228 (371)
T ss_pred             ccceeECCCCCCCCCCCCeEeeeeEEEE----ECCCCCccCCE
Confidence            9999998   999999999999999998    66666666653

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=6.6e-17  Score=145.35  Aligned_cols=102  Identities=25%  Similarity=0.451  Sum_probs=90.3

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.+++|+.+.|.|+|+|+|+|.++       +.|..|+|+|.      .+|+.|+|+|.++...+..+|+++.+.+|+.|
T Consensus       122 ~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C  201 (369)
T PRK14282        122 ARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERC  201 (369)
T ss_pred             CCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCC
Confidence            357899999999999999999987       78999999997      68999999999998888889999989999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCcc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR  180 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~  180 (185)
                      +|+|+++   |+.|.|.|++.+++.+++    .|..+|.+|.
T Consensus       202 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~  239 (369)
T PRK14282        202 GGTGKIPGEYCHECGGSGRIRRRVRTTV----KIPAGVEDGT  239 (369)
T ss_pred             CCcceeCCCCCCCCCCceeEEEEEEEEE----EeCCCCCCCC
Confidence            9999987   999999999999888877    4444455554

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=8e-17  Score=145.49  Aligned_cols=103  Identities=27%  Similarity=0.481  Sum_probs=90.7

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|+++       +.|..|+|+|.      .+|+.|+|+|.++...+.++|+++.+.+|+.|
T Consensus       111 ~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C  190 (377)
T PRK14298        111 PRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTC  190 (377)
T ss_pred             CCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCC
Confidence            467899999999999999999987       88999999997      68999999999988777666778899999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      .|+|+++   |+.|+|.|++.+++.+++    .|..+|.+|..
T Consensus       191 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~IppG~~~G~~  229 (377)
T PRK14298        191 HGRGQVIESPCPVCSGTGKVRKTRKITV----NVPAGADSGLR  229 (377)
T ss_pred             CCCCcccCCCCCCCCCccEEEEEEEEEe----cCCCCCCCCCE
Confidence            9999987   999999999999998887    55556666553

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=7.9e-17  Score=145.47  Aligned_cols=103  Identities=26%  Similarity=0.530  Sum_probs=91.6

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|.++       +.|..|+|+|.      .+|+.|+|+|.+....+..+|+++.+.+|+.|
T Consensus       109 ~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C  188 (378)
T PRK14278        109 VRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTC  188 (378)
T ss_pred             CCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCC
Confidence            357899999999999999999987       88999999997      68999999999888777778888888999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      +|+|+++   |+.|.|.|++.+++.+++    .|..+|.+|.-
T Consensus       189 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~  227 (378)
T PRK14278        189 RGVGEVIPDPCHECAGDGRVRARREITV----KIPAGVGDGMR  227 (378)
T ss_pred             CccceeeCCCCCCCCCceeEecceEEEE----EECCCCCCCcE
Confidence            9999998   999999999999999888    56666666654

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.68  E-value=9.3e-17  Score=143.18  Aligned_cols=104  Identities=26%  Similarity=0.492  Sum_probs=93.0

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.+++|+.+.|.|+|+|+|+|.++       +.|..|+|+|.      ..|+.|+|+|.++...++++|+++.+++|+.|
T Consensus       113 ~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C  192 (354)
T TIGR02349       113 PRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTC  192 (354)
T ss_pred             CCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCC
Confidence            457899999999999999999987       88999999996      67999999999998888888999889999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCcccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLL  182 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l~  182 (185)
                      .|+|+++   |+.|.|.|++.+.+.++.    .|..+|++|..+
T Consensus       193 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~~i  232 (354)
T TIGR02349       193 GGEGKIIKEPCSTCKGKGRVKERKTITV----KIPAGVDTGQRL  232 (354)
T ss_pred             CCcceecCCCCCCCCCCcEecccceEEE----EECCCCCCCCEE
Confidence            9999987   999999999999998888    666677766543

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=1.4e-16  Score=143.65  Aligned_cols=103  Identities=28%  Similarity=0.552  Sum_probs=90.6

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|+++       +.|..|+|+|.      ..|+.|+|+|.+....+.++|+++.+.+|+.|
T Consensus       113 ~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C  192 (376)
T PRK14280        113 PRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHC  192 (376)
T ss_pred             cccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCC
Confidence            357899999999999999999997       89999999996      68999999999988887888998889999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      .|+|+++   |+.|+|.|++.+.+.+++    .|..+|.+|..
T Consensus       193 ~G~G~~~~~~C~~C~G~g~v~~~~~i~V----~Ip~G~~~G~~  231 (376)
T PRK14280        193 NGTGQEIKEKCPTCHGKGKVRKRKKINV----KIPAGVDNGQQ  231 (376)
T ss_pred             CCCCceecCCCCCCCCceEEEEEEEEEE----EeCCCCcCCcE
Confidence            9999988   999999999999888877    44556665543

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=1.4e-16  Score=143.78  Aligned_cols=103  Identities=27%  Similarity=0.462  Sum_probs=90.5

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|+++       +.|..|+|+|.      ..|+.|+|+|.+....+..+|+++.+.+|+.|
T Consensus       116 ~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C  195 (380)
T PRK14276        116 PRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVC  195 (380)
T ss_pred             CCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCC
Confidence            357899999999999999999987       89999999997      68999999999988888888999889999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      .|+|+++   |+.|.|.|++.+.+.++.    .|..+|.+|..
T Consensus       196 ~G~G~~~~~~C~~C~G~g~~~~~~~l~V----~Ip~G~~~G~~  234 (380)
T PRK14276        196 HGTGKEIKEPCQTCHGTGHEKQAHTVSV----KIPAGVETGQQ  234 (380)
T ss_pred             CCCCccccCCCCCCCCceEEEEEEEEEE----EeCCCccCCcE
Confidence            9999988   999999999998888877    44455555543

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=1.9e-16  Score=143.20  Aligned_cols=103  Identities=25%  Similarity=0.499  Sum_probs=90.2

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|.++       +.|..|+|+|.      .+|+.|+|+|.++...+..+|+++...+|+.|
T Consensus       125 ~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C  204 (386)
T PRK14277        125 PQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRC  204 (386)
T ss_pred             CCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCC
Confidence            357899999999999999999987       88999999997      68999999999988888888999888999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      .|+|+++   |+.|+|.|++.+.+.++.    .+..+|.+|..
T Consensus       205 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~~  243 (386)
T PRK14277        205 HGEGKIITDPCNKCGGTGRIRRRRKIKV----NIPAGIDDGQM  243 (386)
T ss_pred             CcceeeccCCCCCCCCCcEEeeeeEEEE----ecCCCccCCcE
Confidence            9999998   999999999998888876    34445555543

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=1.8e-16  Score=143.95  Aligned_cols=102  Identities=23%  Similarity=0.565  Sum_probs=91.6

Q ss_pred             cccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc-----eeCCCCCcccEEEEeeecCCCCceeeeecCCCCC
Q 042059           76 ALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYG  143 (185)
Q Consensus        76 ~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~-----~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G  143 (185)
                      .++.|+.+.|.|+|+|+|+|+++       +.|..|+|+|.     ..|+.|+|+|.+....+..+|+++.+++|+.|.|
T Consensus       134 ~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G  213 (397)
T PRK14281        134 IPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGG  213 (397)
T ss_pred             CCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcc
Confidence            46899999999999999999987       88999999997     6799999999998888888899888899999999


Q ss_pred             CceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          144 RGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       144 ~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      +|+++   |+.|+|.|++.+++.+++    .|..+|.+|+.
T Consensus       214 ~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~  250 (397)
T PRK14281        214 EGRVVKDRCPACYGEGIKQGEVTVKV----TVPAGVQDGNY  250 (397)
T ss_pred             eeeeeCCCCCCCCCCccEecceEEEE----ecCCCCCCCCE
Confidence            99998   999999999999988887    56666776654

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=1.7e-16  Score=143.06  Aligned_cols=103  Identities=21%  Similarity=0.381  Sum_probs=87.8

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|+++       +.|..|+|+|.      .+|+.|+|+|.++..++.++..++.+.+|+.|
T Consensus       119 ~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C  198 (372)
T PRK14296        119 STKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVC  198 (372)
T ss_pred             cCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCc
Confidence            457899999999999999999987       78999999997      67999999999888766555445678899999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      .|+|+++   |+.|+|.|++.+.+.+++    .|..+|++|..
T Consensus       199 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~  237 (372)
T PRK14296        199 NGAGKIIKNKCKNCKGKGKYLERKKIEV----NIPKGIRPNQQ  237 (372)
T ss_pred             CCcceeecccccCCCCceEEEEEEEEEE----EECCCCCCCCE
Confidence            9999998   999999999999888877    55555665543

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=2.7e-16  Score=141.90  Aligned_cols=103  Identities=25%  Similarity=0.512  Sum_probs=90.5

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|.++       +.|..|+|+|.      ..|+.|+|+|++....+.++|+++.+.+|+.|
T Consensus       118 ~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C  197 (380)
T PRK14297        118 PQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKC  197 (380)
T ss_pred             CCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCC
Confidence            457899999999999999999987       88999999997      67999999999988887888988899999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      +|+|.++   |..|+|.|++.+.+.++.    .+..+|.+|..
T Consensus       198 ~G~G~~~~~~C~~C~G~g~v~~~~~i~V----~Ip~G~~~G~~  236 (380)
T PRK14297        198 GGSGKVIEDPCNKCHGKGKVRKNRKIKV----NVPAGVDTGNV  236 (380)
T ss_pred             CCCceEcCCCCCCCCCCeEEEeEeEEEE----EeCCCCCCCcE
Confidence            9999987   999999999988888877    34456666554

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=4.4e-16  Score=140.31  Aligned_cols=103  Identities=26%  Similarity=0.490  Sum_probs=89.9

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|+++       +.|..|+|+|.      ..|+.|+|+|++....+.++|+++.+.+|+.|
T Consensus       108 ~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C  187 (371)
T PRK14287        108 PRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHC  187 (371)
T ss_pred             CCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCC
Confidence            357899999999999999999987       88999999996      67999999999988888888999889999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      .|+|+++   |..|.|.+++.+.+.++.    .|..+|.+|..
T Consensus       188 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~~  226 (371)
T PRK14287        188 EGTGKIIKQKCATCGGKGKVRKRKKINV----KVPAGIDHGQQ  226 (371)
T ss_pred             CCCCccccccCCCCCCeeEEeeeEEEEE----EECCcCCCCCE
Confidence            9999987   999999999988887776    44455555543

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=4.4e-16  Score=140.68  Aligned_cols=103  Identities=24%  Similarity=0.492  Sum_probs=91.2

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|+++       +.|..|+|+|.      ..|+.|+|+|.++...+..+|+++.+.+|+.|
T Consensus       124 ~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C  203 (386)
T PRK14289        124 VFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTC  203 (386)
T ss_pred             CCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCC
Confidence            357899999999999999999987       89999999997      68999999999998888888999889999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      +|+|.++   |+.|.|.|++.+.+.+++    +|..+|++|..
T Consensus       204 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~  242 (386)
T PRK14289        204 NGEGKIIKKKCKKCGGEGIVYGEEVITV----KIPAGVAEGMQ  242 (386)
T ss_pred             CccccccCcCCCCCCCCcEEeeeEEEEE----EeCCCCCCCCE
Confidence            9999987   999999999999888877    55556665543

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=4.7e-16  Score=141.13  Aligned_cols=99  Identities=22%  Similarity=0.448  Sum_probs=86.4

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|+++       +.|+.|+|+|.      .+|+.|+|+|.++...    |+++.+++|+.|
T Consensus       143 ~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C  218 (392)
T PRK14279        143 PRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDC  218 (392)
T ss_pred             CCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCC
Confidence            457899999999999999999987       88999999997      6799999999987643    677888999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      +|+|+++   |+.|.|.|++.+++.+++    .|..+|.+|+.
T Consensus       219 ~G~G~~i~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~  257 (392)
T PRK14279        219 RGTGSIIEDPCEECKGTGVTTRTRTINV----RIPPGVEDGQR  257 (392)
T ss_pred             CceeEEeCCcCCCCCCCeEEEEeeeeEE----EeCCCCCCCcE
Confidence            9999998   999999999999988887    55566666653

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.63  E-value=7.5e-16  Score=141.35  Aligned_cols=103  Identities=24%  Similarity=0.491  Sum_probs=88.4

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc-----eeCCCCCcccEEEEeeecCCCCceeeeecCCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCY  142 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~-----~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~  142 (185)
                      +.+|.|+.+.|.|+|+|+|+|+++       +.|..|+|+|.     .+|+.|+|+|.++...+.++..++.+.+|+.|+
T Consensus       120 ~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~  199 (421)
T PTZ00037        120 KKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCN  199 (421)
T ss_pred             ccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCC
Confidence            357899999999999999999987       78999999997     689999999997776555442345789999999


Q ss_pred             CCceEE-----CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          143 GRGKLV-----CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       143 G~G~~i-----C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      |+|+++     |+.|.|.|++.+.+.|++    +|..+|.+|.-
T Consensus       200 G~G~~i~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~dG~~  239 (421)
T PTZ00037        200 GQGKIIPESKKCKNCSGKGVKKTRKILEV----NIDKGVPNQHK  239 (421)
T ss_pred             CcceeccccccCCcCCCcceeeeeeEEEE----eeCCCCCCCcE
Confidence            999985     999999999999999998    67777777754

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=7.4e-16  Score=139.63  Aligned_cols=99  Identities=27%  Similarity=0.537  Sum_probs=87.2

Q ss_pred             cccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCCC
Q 042059           76 ALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCY  142 (185)
Q Consensus        76 ~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~  142 (185)
                      .++.|+.+.|.|+|+|+|+|+++       +.|..|+|+|.      ..|+.|+|+|.+....    |+++.+.+|+.|+
T Consensus       129 ~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~  204 (391)
T PRK14284        129 RQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPECG  204 (391)
T ss_pred             CCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCCC
Confidence            57899999999999999999987       88999999997      6899999999887542    7788889999999


Q ss_pred             CCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCcccc
Q 042059          143 GRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLL  182 (185)
Q Consensus       143 G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l~  182 (185)
                      |+|+++   |+.|.|.|++.+++.+++    .|..+|.+|+-+
T Consensus       205 G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~~i  243 (391)
T PRK14284        205 GEGRVITDPCSVCRGQGRIKDKRSVHV----HIPAGVDSGMRL  243 (391)
T ss_pred             CCCcccCCcCCCCCCcceecceEEEEE----EECCCCCCCCEE
Confidence            999987   999999999999999988    666677776543

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=7.2e-16  Score=138.68  Aligned_cols=99  Identities=24%  Similarity=0.510  Sum_probs=87.0

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|.++       +.|..|+|+|.      ..|+.|+|+|++..    .+|+++.+.+|+.|
T Consensus       116 ~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C  191 (365)
T PRK14285        116 HEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQ----GGGFFRVTTTCPKC  191 (365)
T ss_pred             CCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEe----cCceeEEeeecCCC
Confidence            357899999999999999999987       88999999996      67999999998775    35788889999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      .|+|+++   |+.|+|.|++.+++.++.    .|..+|.+|+-
T Consensus       192 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~  230 (365)
T PRK14285        192 YGNGKIISNPCKSCKGKGSLKKKETIEL----KIPAGIDDNQQ  230 (365)
T ss_pred             CCcccccCCCCCCCCCCCEEeccEEEEE----EECCCCCCCCE
Confidence            9999998   999999999999988887    56666766653

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=9.5e-16  Score=138.22  Aligned_cols=98  Identities=30%  Similarity=0.549  Sum_probs=84.6

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|+++       +.|..|+|+|.      ..|+.|+|+|.+....    |+++.+.+|+.|
T Consensus       120 ~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C  195 (372)
T PRK14286        120 PQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ----GFFSVATTCPTC  195 (372)
T ss_pred             CCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe----ceEEEEEeCCCC
Confidence            457899999999999999999987       88999999997      6899999999887642    778888999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCcc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR  180 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~  180 (185)
                      .|+|+++   |+.|+|.|++.+++.+++    .|..+|.+|.
T Consensus       196 ~G~G~~~~~~C~~C~G~g~~~~~~~l~V----~Ip~G~~~G~  233 (372)
T PRK14286        196 RGKGTVISNPCKTCGGQGLQEKRRTINI----KIPPGVETGS  233 (372)
T ss_pred             CceeeEecccCCCCCCCcEEecceEEEE----EECCCCCCCC
Confidence            9999998   999999999999888877    4444555544

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=1.5e-15  Score=136.39  Aligned_cols=99  Identities=26%  Similarity=0.495  Sum_probs=85.4

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|.++       +.|..|+|+|.      ..|+.|+|+|.+....    |+++.+.+|+.|
T Consensus       112 ~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C  187 (371)
T PRK10767        112 ARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ----GFFTVQQTCPTC  187 (371)
T ss_pred             CCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee----ceEEEEEeCCCC
Confidence            467899999999999999999987       89999999997      5899999999877643    777888999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      .|+|+++   |+.|.|.|++.+.+.++.    +|..+|.+|..
T Consensus       188 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~~  226 (371)
T PRK10767        188 HGRGKIIKDPCKKCHGQGRVEKEKTLSV----KIPAGVDTGDR  226 (371)
T ss_pred             CCceeECCCCCCCCCCCceEeeeeeEEE----ecCCCCCCCcE
Confidence            9999987   999999999999888887    44555555543

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=1.4e-15  Score=136.93  Aligned_cols=102  Identities=26%  Similarity=0.549  Sum_probs=88.2

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|.++       +.|..|+|+|.      ..|+.|+|+|.+....+.++|+++.+.+|+.|
T Consensus       113 ~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C  192 (374)
T PRK14293        113 PQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTC  192 (374)
T ss_pred             ccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCC
Confidence            356889999999999999999987       88999999997      67999999999988888888999888999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCcc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR  180 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~  180 (185)
                      .|+|+++   |..|.|.|++.+.+.++.    .|..+|++|+
T Consensus       193 ~G~G~~~~~~C~~C~G~g~v~~~~~~~V----~IppG~~~G~  230 (374)
T PRK14293        193 NGTGQVIEDPCDACGGQGVKQVTKKLKI----NIPAGVDTGT  230 (374)
T ss_pred             CcceeEeccCCCCCCCCcccccceEEEE----EeCCCCCCCC
Confidence            9999997   999999999998877765    3344455544

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=1.5e-15  Score=137.73  Aligned_cols=99  Identities=27%  Similarity=0.554  Sum_probs=86.0

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|+++       +.|..|+|+|.      ..|+.|+|+|.+....    |.|+.+.+|+.|
T Consensus       136 ~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C  211 (389)
T PRK14295        136 PRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDC  211 (389)
T ss_pred             CCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCC
Confidence            357899999999999999999987       78999999997      6899999999987643    677888999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      .|+|+++   |+.|.|.|++.+.+.++.    .|..+|++|+.
T Consensus       212 ~G~G~~~~~~C~~C~G~g~~~~~~~l~V----~Ip~G~~~G~~  250 (389)
T PRK14295        212 KGRGLIADDPCLVCKGSGRAKSSRTMQV----RIPAGVSDGQR  250 (389)
T ss_pred             cceeEEeccCCCCCCCCceEeeeeEEEE----EeCCCCCCCCE
Confidence            9999998   999999999999888887    55566666653

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=1.3e-15  Score=137.40  Aligned_cols=99  Identities=29%  Similarity=0.574  Sum_probs=85.7

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|.++       +.|..|+|+|.      ..|+.|+|+|.+...    .|+++.+.+|+.|
T Consensus       114 ~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~----~G~~~~~~~C~~C  189 (373)
T PRK14301        114 PQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQS----QGFFQIAVPCPVC  189 (373)
T ss_pred             CCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEE----eeeEEEEEeCCCC
Confidence            457899999999999999999987       88999999997      679999999998753    2778889999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      +|+|+++   |+.|+|.|++.+++.+++    .|..+|.+|..
T Consensus       190 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~~  228 (373)
T PRK14301        190 RGEGRVITHPCPKCKGSGIVQQTRELKV----RIPAGVDTGSR  228 (373)
T ss_pred             CceeeecCCCCCCCCCCceeccceEEEE----EeCCCCcCCCE
Confidence            9999998   999999999999888887    45555665543

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=1.7e-15  Score=136.46  Aligned_cols=98  Identities=20%  Similarity=0.434  Sum_probs=85.4

Q ss_pred             cccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc-----eeCCCCCcccEEEEeeecCCCCceeeeecCCCCC
Q 042059           76 ALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYG  143 (185)
Q Consensus        76 ~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~-----~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G  143 (185)
                      .++.|+.+.|.|+|+|+|+|+++       +.|..|+|+|.     ..|+.|+|+|.+....    |+++.+++|+.|.|
T Consensus       111 ~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G  186 (369)
T PRK14288        111 SIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ----GFMSFAQTCGACQG  186 (369)
T ss_pred             CCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe----ceEEEEEecCCCCC
Confidence            56899999999999999999987       69999999997     6899999999876643    77788889999999


Q ss_pred             CceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          144 RGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       144 ~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      +|+++   |+.|.|.|++.+.+.+++    .|..+|++|..
T Consensus       187 ~G~~~~~~C~~C~G~g~v~~~~~l~V----~IP~G~~~G~~  223 (369)
T PRK14288        187 KGKIIKTPCQACKGKTYILKDEEIDA----IIPEGIDDQNR  223 (369)
T ss_pred             CceEccccCccCCCcceEEEEEEEEE----ecCCCCCCCCE
Confidence            99988   999999999999999988    55566666654

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=2.4e-15  Score=135.46  Aligned_cols=98  Identities=26%  Similarity=0.470  Sum_probs=85.5

Q ss_pred             cccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCCC
Q 042059           76 ALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCY  142 (185)
Q Consensus        76 ~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~  142 (185)
                      .++.|+.+.|.|+|+|+|+|.++       +.|..|+|+|.      .+|+.|+|+|.++..    .|+++.+.+|+.|.
T Consensus       116 ~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~  191 (372)
T PRK14300        116 VRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQ----QGFFTIEQACHKCQ  191 (372)
T ss_pred             CCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEe----eceEEEEEeCCCCC
Confidence            47899999999999999999987       89999999996      789999999987753    37888889999999


Q ss_pred             CCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          143 GRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       143 G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      |+|+++   |+.|+|.|++.+.+.+++    .|..+|++|.-
T Consensus       192 G~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~  229 (372)
T PRK14300        192 GNGQIIKNPCKKCHGMGRYHKQRNLSV----NIPAGVENGTR  229 (372)
T ss_pred             ccceEeCCCCCCCCCceEEEeeEEEEE----EECCCCCCCcE
Confidence            999998   999999999999888887    55566666643

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=2.8e-15  Score=134.74  Aligned_cols=98  Identities=28%  Similarity=0.526  Sum_probs=85.0

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|.++       +.|..|+|+|.      ..|+.|+|+|.+...    .|+++.+++|+.|
T Consensus       114 ~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~G~~~~~~~C~~C  189 (366)
T PRK14294        114 VRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQS----QGFFSIRTTCPRC  189 (366)
T ss_pred             CCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEE----eeeEEEEeeCCCC
Confidence            357899999999999999999987       88999999997      579999999988753    2778889999999


Q ss_pred             CCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCcc
Q 042059          142 YGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR  180 (185)
Q Consensus       142 ~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~  180 (185)
                      +|+|+++   |+.|.|.|++.+++.+++    .|..+|++|.
T Consensus       190 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~  227 (366)
T PRK14294        190 RGMGKVIVSPCKTCHGQGRVRVSKTVQV----KIPAGVDTGS  227 (366)
T ss_pred             CCcCeecCcCCCCCCCceEeecceeEEE----ecCCCCcCCc
Confidence            9999998   999999999999888887    4555666554

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=2.8e-15  Score=135.26  Aligned_cols=101  Identities=30%  Similarity=0.570  Sum_probs=88.3

Q ss_pred             cccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCCC
Q 042059           76 ALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCY  142 (185)
Q Consensus        76 ~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~  142 (185)
                      .++.|+.+.|.|+|+|+|+|.++       +.|..|+|+|.      ..|+.|+|+|.+....+..+|+++.+.+|+.|.
T Consensus       117 ~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  196 (378)
T PRK14283        117 QRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQ  196 (378)
T ss_pred             cCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCC
Confidence            47899999999999999999987       88999999987      679999999999888888889888889999999


Q ss_pred             CCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCcc
Q 042059          143 GRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR  180 (185)
Q Consensus       143 G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~  180 (185)
                      |+|+.+   |..|.|.|++.+.+.++.    .|..+|++|.
T Consensus       197 G~G~~~~~~C~~C~G~g~v~~~~~l~V----~IppG~~~G~  233 (378)
T PRK14283        197 GEGKIVEKPCSNCHGKGVVRETKTISV----KIPAGVETGS  233 (378)
T ss_pred             ccceecCCCCCCCCCceeeccceeEEE----EECCCCCCCc
Confidence            999997   999999999998888776    4444455444

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=5.1e-15  Score=133.03  Aligned_cols=103  Identities=27%  Similarity=0.468  Sum_probs=90.2

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc-------eeCCCCCcccEEEEeeecCCCCceeeeecCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA-------VLCDMCGGTGKWKALNRKRAKDVYEFTECPN  140 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~-------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~  140 (185)
                      +.++.|+.+.+.|+|+|+|+|.++       ..|..|+|+|.       ..|+.|+|+|.+....+..+|+++.+.+|+.
T Consensus       109 ~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~  188 (371)
T PRK14292        109 PARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPT  188 (371)
T ss_pred             ccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCC
Confidence            357899999999999999999887       88999999996       6799999999998877777888888999999


Q ss_pred             CCCCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          141 CYGRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       141 C~G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      |.|.|+.+   |+.|.|.|++.+.+.+++    .|..+|++|.-
T Consensus       189 C~G~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~  228 (371)
T PRK14292        189 CRGEGQIITDPCTVCRGRGRTLKAETVKV----KLPRGIDEGYR  228 (371)
T ss_pred             CcccceecCCCCCCCCCceEEeecceEEE----EECCCCCCCcE
Confidence            99999997   999999999998888877    55566666653

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=5.4e-15  Score=132.83  Aligned_cols=99  Identities=26%  Similarity=0.512  Sum_probs=84.7

Q ss_pred             ccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc-----eeCCCCCcccEEEEeeecCCCCc--eeeeecCCCC
Q 042059           77 LISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDV--YEFTECPNCY  142 (185)
Q Consensus        77 ~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~-----~~C~~C~GsG~~~~~~r~~~G~~--~~~~~C~~C~  142 (185)
                      ++.|+.+.|.|+|+|+|.|.++       +.|..|+|+|.     ..|+.|+|+|.+....  .+|++  +.+.+|+.|.
T Consensus       121 ~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~--~~g~~~~~~~~~C~~C~  198 (365)
T PRK14290        121 IDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVR--GQGFFRMVTVTTCRTCG  198 (365)
T ss_pred             CCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEe--ccCeEEEEEEEeCCCCC
Confidence            3789999999999999999987       88999999997     6899999999877754  35665  3568999999


Q ss_pred             CCceEE---CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          143 GRGKLV---CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       143 G~G~~i---C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      |+|+++   |+.|+|.|++.+.+.+++    .|..+|.+|.-
T Consensus       199 G~G~~~~~~C~~C~G~g~v~~~~~~~V----~Ip~G~~~G~~  236 (365)
T PRK14290        199 GRGRIPEEKCPRCNGTGTVVVNEDISV----KIPKGATDNLR  236 (365)
T ss_pred             CceeEccCCCCCCCCceeEEEeeEEEE----EECCCCCCCcE
Confidence            999997   999999999999998888    55666666653

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=7e-15  Score=132.94  Aligned_cols=98  Identities=28%  Similarity=0.501  Sum_probs=84.7

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNC  141 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C  141 (185)
                      +.++.|+.+.|.|+|+|+|+|+++       +.|..|+|+|.      ..|+.|+|+|.++..    .++++.+.+|+.|
T Consensus       126 ~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C  201 (382)
T PRK14291        126 PVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQR----GGFFRISQTCPTC  201 (382)
T ss_pred             ccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEe----cceEEEEecCCCC
Confidence            357899999999999999999987       88999999996      689999999987764    2667788999999


Q ss_pred             CCCceEE--CCCCCCceEEeeeeEEecCChhhhhhhccCcc
Q 042059          142 YGRGKLV--CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR  180 (185)
Q Consensus       142 ~G~G~~i--C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~  180 (185)
                      +|+|.+.  |+.|+|.|++.+++.+++    .|..+|.+|.
T Consensus       202 ~G~G~~~~~C~~C~G~g~v~~~~~l~V----~Ip~G~~~G~  238 (382)
T PRK14291        202 GGEGVLREPCSKCNGRGLVIKKETIKV----RIPPGVDNGS  238 (382)
T ss_pred             CCceEEccCCCCCCCCceEEeeeEEEE----EeCCCCCCCC
Confidence            9999654  999999999999999988    5556666664

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=3.5e-13  Score=120.82  Aligned_cols=101  Identities=24%  Similarity=0.429  Sum_probs=89.4

Q ss_pred             cccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc-----eeCCCCCcccEEEEeeecCCCCce-eeeecCCCC
Q 042059           76 ALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVY-EFTECPNCY  142 (185)
Q Consensus        76 ~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~-----~~C~~C~GsG~~~~~~r~~~G~~~-~~~~C~~C~  142 (185)
                      .+|.|+++.|+|+|+|+|+|.+.       ..|..|+|.|.     ..|+.|.|+|......+.++|+++ .+..|..|+
T Consensus        98 ~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~  177 (337)
T KOG0712|consen   98 QRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCN  177 (337)
T ss_pred             ccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCC
Confidence            45899999999999999999765       99999999998     679999999999999888988876 789999999


Q ss_pred             CCceE-----ECCCCCCceEEeeeeEEecCChhhhhhhccCcc
Q 042059          143 GRGKL-----VCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGR  180 (185)
Q Consensus       143 G~G~~-----iC~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~  180 (185)
                      |.|..     .|+.|.|.+++.+++++++    .+...|-.++
T Consensus       178 G~G~~~~~kd~C~~C~G~~~v~~kkil~v----~V~~g~~~~~  216 (337)
T KOG0712|consen  178 GSGETISLKDRCKTCSGAKVVREKKILEV----HVEPGMPHGQ  216 (337)
T ss_pred             CccccccccccCcccccchhhhhhheeec----cccCCCcccc
Confidence            99998     3999999999999999988    5555555544

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.27  E-value=1.2e-11  Score=86.52  Aligned_cols=56  Identities=34%  Similarity=0.869  Sum_probs=46.8

Q ss_pred             cCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE----CCCCCCce
Q 042059          101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV----CPVCLGTG  156 (185)
Q Consensus       101 C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i----C~~C~G~G  156 (185)
                      |+.|+|+|.      .+|+.|+|+|+++...+..++.++.+++|+.|+|+|+++    |+.|+|.|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            789999998      799999999999998886777788999999999999997    99999975

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=99.12  E-value=3.9e-10  Score=87.18  Aligned_cols=58  Identities=34%  Similarity=0.810  Sum_probs=51.3

Q ss_pred             eecCCCCCccceeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEECCCCCCceEEe
Q 042059           99 PVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPN  159 (185)
Q Consensus        99 ~~C~~C~GtG~~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~iC~~C~G~G~i~  159 (185)
                      +.|..|+|+|...|+.|+|+|.+....   .+.++.+++|+.|.|.|+..|+.|+|.|++.
T Consensus        42 v~C~~C~GsG~~~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~   99 (111)
T PLN03165         42 QPCFPCSGTGAQVCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSLTCTTCQGSGIQP   99 (111)
T ss_pred             CCCCCCCCCCCcCCCCCcCcCeEEEEe---CCcEEEEEECCCCCCcceeeCCCCCCCEEEe
Confidence            899999999999999999999987532   2446688999999999999999999999883

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=5.2e-06  Score=74.83  Aligned_cols=66  Identities=33%  Similarity=0.681  Sum_probs=42.2

Q ss_pred             eecCCCCCccceeCCCCCcccEE--------EEeeecC-------------CCCceeeeecCCCCCCceEECCCCCCceE
Q 042059           99 PVCRNCGGSGAVLCDMCGGTGKW--------KALNRKR-------------AKDVYEFTECPNCYGRGKLVCPVCLGTGL  157 (185)
Q Consensus        99 ~~C~~C~GtG~~~C~~C~GsG~~--------~~~~r~~-------------~G~~~~~~~C~~C~G~G~~iC~~C~G~G~  157 (185)
                      ..|..|.|.|...|+.|+|.|.-        ......+             +.......+|++|.|+|++.|.+|.|+|.
T Consensus       188 ~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gtgs  267 (406)
T KOG2813|consen  188 TFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGTGS  267 (406)
T ss_pred             hhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCccc
Confidence            67888888888888888888831        1111111             01112456788888888888888888877


Q ss_pred             EeeeeEE
Q 042059          158 PNNKGLL  164 (185)
Q Consensus       158 i~~~k~L  164 (185)
                      ..+-.++
T Consensus       268 ll~~t~~  274 (406)
T KOG2813|consen  268 LLNYTRI  274 (406)
T ss_pred             eeeeEEE
Confidence            6654433

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.63  E-value=3.5e-05  Score=74.05  Aligned_cols=64  Identities=34%  Similarity=0.697  Sum_probs=48.0

Q ss_pred             eecCCCCCccc-----eeCCCCCcccEEEEeeecC--------C-CCceeeeecCCCCCCceEE----CCCCCCceEEee
Q 042059           99 PVCRNCGGSGA-----VLCDMCGGTGKWKALNRKR--------A-KDVYEFTECPNCYGRGKLV----CPVCLGTGLPNN  160 (185)
Q Consensus        99 ~~C~~C~GtG~-----~~C~~C~GsG~~~~~~r~~--------~-G~~~~~~~C~~C~G~G~~i----C~~C~G~G~i~~  160 (185)
                      ..|+.|+|+|.     ..|+.|+|+|+.-.....+        . +++....+|+.|.|+|.+.    |+.|.|+|.+..
T Consensus         3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~   82 (715)
T COG1107           3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLT   82 (715)
T ss_pred             ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEEe
Confidence            47999999998     6799999999973322111        1 1223467999999999986    999999998865


Q ss_pred             ee
Q 042059          161 KG  162 (185)
Q Consensus       161 ~k  162 (185)
                      -+
T Consensus        83 c~   84 (715)
T COG1107          83 CD   84 (715)
T ss_pred             ec
Confidence            43

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=3e-05  Score=68.47  Aligned_cols=87  Identities=25%  Similarity=0.489  Sum_probs=69.4

Q ss_pred             cccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCCC
Q 042059           76 ALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCY  142 (185)
Q Consensus        76 ~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~  142 (185)
                      ..+.++.+.+.++|+++..|..+       ..|..|.|.|.      ..|..|.|.|.......   .++... +|..|.
T Consensus       135 ~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~f~~~-~~~~c~  210 (288)
T KOG0715|consen  135 VPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKE---DPFILY-TCSYCL  210 (288)
T ss_pred             ccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCccccccccc---CCccee-eccccc
Confidence            34458888899999999999954       89999999998      78999999996654322   333333 899999


Q ss_pred             CCceEE---CCCCCCceEEeeeeEEec
Q 042059          143 GRGKLV---CPVCLGTGLPNNKGLLRR  166 (185)
Q Consensus       143 G~G~~i---C~~C~G~G~i~~~k~L~~  166 (185)
                      |.|.+.   |..|.|.|.+...+.+..
T Consensus       211 ~~~~~~~~~c~~~~g~~~v~~~k~i~i  237 (288)
T KOG0715|consen  211 GRGLVLRDNCQACSGAGQVRRAKDIMI  237 (288)
T ss_pred             ccceeccchHHHhhcchhhhhheeEEe
Confidence            999998   999999998776665544

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.52  E-value=8.7e-05  Score=51.77  Aligned_cols=38  Identities=42%  Similarity=0.920  Sum_probs=27.5

Q ss_pred             eeeecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCc
Q 042059           97 ERPVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRG  145 (185)
Q Consensus        97 ~k~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G  145 (185)
                      ....|+.|+|+|.               ..|+.|+|+|+++ .          ..+|+.|+|.|
T Consensus        14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~----------~~~C~~C~G~g   66 (66)
T PF00684_consen   14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E----------KDPCKTCKGSG   66 (66)
T ss_dssp             T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T----------SSB-SSSTTSS
T ss_pred             CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C----------CCCCCCCCCcC
Confidence            3488999999997               5899999999986 2          26899999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=6e-05  Score=68.11  Aligned_cols=51  Identities=25%  Similarity=0.501  Sum_probs=35.8

Q ss_pred             eeCCCCCcccEEEEeeecCCC--------Cce-------------eeeecCCCCCCceEECCCCCCceEEee
Q 042059          110 VLCDMCGGTGKWKALNRKRAK--------DVY-------------EFTECPNCYGRGKLVCPVCLGTGLPNN  160 (185)
Q Consensus       110 ~~C~~C~GsG~~~~~~r~~~G--------~~~-------------~~~~C~~C~G~G~~iC~~C~G~G~i~~  160 (185)
                      ..|..|.|+|.++.....+.|        +|.             ....|..|+|+|+..|++|+|.|.+.-
T Consensus       188 ~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C  259 (406)
T KOG2813|consen  188 TFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPC  259 (406)
T ss_pred             hhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCccc
Confidence            568899999987765444444        221             235677788888888999988887754

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00013  Score=66.73  Aligned_cols=56  Identities=36%  Similarity=0.792  Sum_probs=40.6

Q ss_pred             cceeeccccCCccccCCeeEEEEeeeehhcCCceeeecCCCCCccc-------------eeCCCCCcccEEEEeeecCCC
Q 042059           64 RRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGA-------------VLCDMCGGTGKWKALNRKRAK  130 (185)
Q Consensus        64 r~~c~~c~~~~~~~g~Di~~~l~Vslee~~~G~~k~~C~~C~GtG~-------------~~C~~C~GsG~~~~~~r~~~G  130 (185)
                      ...|..|.|+-...                 |...+.|+.|+|+|.             .+|+.|+|+|..+.       
T Consensus       142 ~~~C~~C~GsGak~-----------------gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~-------  197 (371)
T COG0484         142 SVTCSTCHGSGAKP-----------------GTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK-------  197 (371)
T ss_pred             eeECCcCCCCCCCC-----------------CCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC-------
Confidence            34788888872222                 223388999999985             57999999988763       


Q ss_pred             CceeeeecCCCCCCceEE
Q 042059          131 DVYEFTECPNCYGRGKLV  148 (185)
Q Consensus       131 ~~~~~~~C~~C~G~G~~i  148 (185)
                           .+|..|+|.|++.
T Consensus       198 -----~pC~~C~G~G~v~  210 (371)
T COG0484         198 -----DPCGKCKGKGRVK  210 (371)
T ss_pred             -----CCCCCCCCCCeEe
Confidence                 6799999998863

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.77  E-value=0.0012  Score=55.40  Aligned_cols=33  Identities=30%  Similarity=0.565  Sum_probs=25.8

Q ss_pred             eeeecCCCCCCceEE-----CCCCCCceEEeeeeEEec
Q 042059          134 EFTECPNCYGRGKLV-----CPVCLGTGLPNNKGLLRR  166 (185)
Q Consensus       134 ~~~~C~~C~G~G~~i-----C~~C~G~G~i~~~k~L~~  166 (185)
                      ...+|+.|+|+|+++     |+.|+|+|++..+..+.+
T Consensus        98 ~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~  135 (186)
T TIGR02642        98 NSCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLL  135 (186)
T ss_pred             cCCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEE
Confidence            457788888888776     888888888888776665

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.54  E-value=0.0027  Score=61.39  Aligned_cols=25  Identities=44%  Similarity=0.918  Sum_probs=14.3

Q ss_pred             eecCCCCCccc----eeCCCCCcccEEEE
Q 042059           99 PVCRNCGGSGA----VLCDMCGGTGKWKA  123 (185)
Q Consensus        99 ~~C~~C~GtG~----~~C~~C~GsG~~~~  123 (185)
                      +.|..|+|+|.    ..|+.|+|+|.+..
T Consensus        54 ~pc~~c~gkG~V~v~~~c~~c~G~gkv~~   82 (715)
T COG1107          54 IPCPKCRGKGTVTVYDTCPECGGTGKVLT   82 (715)
T ss_pred             CCCCeeccceeEEEEeecccCCCceeEEe
Confidence            45666666665    45666666665543

>PRK14300 chaperone protein DnaJ; Provisional

Probab=96.32  E-value=0.0027  Score=57.66  Aligned_cols=37  Identities=35%  Similarity=0.917  Sum_probs=29.6

Q ss_pred             eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|+.|+|+|.           ..|+.|+|+|+.+.            .+|..|.|+|.+
T Consensus       163 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  210 (372)
T PRK14300        163 TTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK------------NPCKKCHGMGRY  210 (372)
T ss_pred             ccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC------------CCCCCCCCceEE
Confidence            77888888886           36888888888753            568888888886

>PRK14296 chaperone protein DnaJ; Provisional

Probab=96.31  E-value=0.003  Score=57.46  Aligned_cols=37  Identities=43%  Similarity=1.127  Sum_probs=31.1

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|..|+|+|.               .+|+.|+|+|..+.            ..|+.|.|.|.+
T Consensus       167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  218 (372)
T PRK14296        167 HICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK------------NKCKNCKGKGKY  218 (372)
T ss_pred             ccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec------------ccccCCCCceEE
Confidence            78999999986               27999999998764            569999999975

>PRK14278 chaperone protein DnaJ; Provisional

Probab=96.29  E-value=0.0031  Score=57.42  Aligned_cols=37  Identities=35%  Similarity=0.944  Sum_probs=30.7

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|..|+|+|.               ..|+.|+|+|..+.            ..|+.|.|+|.+
T Consensus       157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  208 (378)
T PRK14278        157 VTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP------------DPCHECAGDGRV  208 (378)
T ss_pred             eecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC------------CCCCCCCCceeE
Confidence            78999999985               46999999998753            569999999976

>PRK14279 chaperone protein DnaJ; Provisional

Probab=96.26  E-value=0.0031  Score=57.71  Aligned_cols=38  Identities=39%  Similarity=0.866  Sum_probs=32.2

Q ss_pred             eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE
Q 042059           99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV  148 (185)
Q Consensus        99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i  148 (185)
                      ..|..|+|+|.           .+|+.|+|+|+.+.            ..|..|.|.|.+.
T Consensus       191 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~g~v~  239 (392)
T PRK14279        191 KVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------DPCEECKGTGVTT  239 (392)
T ss_pred             CCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------CcCCCCCCCeEEE
Confidence            78999999987           47999999998754            5699999999773

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.0062  Score=53.97  Aligned_cols=51  Identities=33%  Similarity=0.747  Sum_probs=42.3

Q ss_pred             eecCCCCCccceeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEECCCCC
Q 042059           99 PVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCL  153 (185)
Q Consensus        99 ~~C~~C~GtG~~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~iC~~C~  153 (185)
                      -.|..|.|.+...|..|+|+=++...    ........+|..|+-.|.+.|+.|.
T Consensus       230 ~~C~~CGg~rFlpC~~C~GS~kv~~~----~~~~~~~~rC~~CNENGLvrCp~Cs  280 (281)
T KOG2824|consen  230 GVCESCGGARFLPCSNCHGSCKVHEE----EEDDGGVLRCLECNENGLVRCPVCS  280 (281)
T ss_pred             CcCCCcCCcceEecCCCCCceeeeee----ccCCCcEEECcccCCCCceeCCccC
Confidence            57999999999999999999887762    1223356899999999999999995

>PRK14298 chaperone protein DnaJ; Provisional

Probab=96.23  E-value=0.003  Score=57.50  Aligned_cols=38  Identities=39%  Similarity=1.004  Sum_probs=30.6

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV  148 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i  148 (185)
                      ..|+.|+|+|.               ..|+.|+|+|..+.            ..|+.|.|+|.+.
T Consensus       159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~  211 (377)
T PRK14298        159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE------------SPCPVCSGTGKVR  211 (377)
T ss_pred             CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC------------CCCCCCCCccEEE
Confidence            77999999985               46999999998653            5699999999763

>PRK14297 chaperone protein DnaJ; Provisional

Probab=96.21  E-value=0.0042  Score=56.46  Aligned_cols=37  Identities=46%  Similarity=1.169  Sum_probs=29.5

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|+.|+|+|.               .+|+.|+|+|..+.            ..|..|.|.|.+
T Consensus       166 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  217 (380)
T PRK14297        166 KTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE------------DPCNKCHGKGKV  217 (380)
T ss_pred             ccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC------------CCCCCCCCCeEE
Confidence            77999999985               36999999998653            569999998854

>PRK14301 chaperone protein DnaJ; Provisional

Probab=96.17  E-value=0.0034  Score=57.05  Aligned_cols=37  Identities=46%  Similarity=1.144  Sum_probs=28.9

Q ss_pred             eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|..|+|+|.           ..|+.|+|+|+.+.            ..|+.|.|.|.+
T Consensus       162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  209 (373)
T PRK14301        162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT------------HPCPKCKGSGIV  209 (373)
T ss_pred             cccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC------------CCCCCCCCCcee
Confidence            67888888885           47888888888653            468888888876

>PRK14286 chaperone protein DnaJ; Provisional

Probab=96.16  E-value=0.0039  Score=56.68  Aligned_cols=38  Identities=37%  Similarity=0.906  Sum_probs=30.0

Q ss_pred             eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE
Q 042059           99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV  148 (185)
Q Consensus        99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i  148 (185)
                      ..|..|+|+|.           ..|+.|+|+|+.+.            ..|..|.|.|.+.
T Consensus       168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~  216 (372)
T PRK14286        168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS------------NPCKTCGGQGLQE  216 (372)
T ss_pred             ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec------------ccCCCCCCCcEEe
Confidence            77888988885           46889999888753            4688898888763

>PRK14285 chaperone protein DnaJ; Provisional

Probab=96.10  E-value=0.0037  Score=56.66  Aligned_cols=37  Identities=41%  Similarity=0.996  Sum_probs=30.5

Q ss_pred             eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|..|+|+|.           ..|+.|+|+|..+.            ..|..|.|+|.+
T Consensus       164 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  211 (365)
T PRK14285        164 SICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS------------NPCKSCKGKGSL  211 (365)
T ss_pred             ccCCCccCceeEEecCceeEEeeecCCCCCcccccC------------CCCCCCCCCCEE
Confidence            77999999885           47999999998753            569999999976

>PRK14288 chaperone protein DnaJ; Provisional

Probab=96.09  E-value=0.005  Score=55.92  Aligned_cols=37  Identities=35%  Similarity=0.915  Sum_probs=30.9

Q ss_pred             eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|..|+|+|.           ..|+.|+|+|+.+.            ..|..|.|.|.+
T Consensus       157 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  204 (369)
T PRK14288        157 ETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------------TPCQACKGKTYI  204 (369)
T ss_pred             cCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------------ccCccCCCcceE
Confidence            77999999996           46999999998753            569999999876

>PRK14295 chaperone protein DnaJ; Provisional

Probab=96.07  E-value=0.0047  Score=56.52  Aligned_cols=37  Identities=35%  Similarity=0.836  Sum_probs=30.6

Q ss_pred             eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|..|+|+|.           .+|+.|+|+|..+.            ..|..|.|.|.+
T Consensus       184 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~  231 (389)
T PRK14295        184 RVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------DPCLVCKGSGRA  231 (389)
T ss_pred             cCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------------cCCCCCCCCceE
Confidence            78999999886           57999999998754            569999998876

>PRK14284 chaperone protein DnaJ; Provisional

Probab=96.06  E-value=0.0038  Score=57.04  Aligned_cols=37  Identities=41%  Similarity=1.038  Sum_probs=28.9

Q ss_pred             eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|+.|+|+|.           ..|+.|+|+|..+.            ..|+.|.|.|.+
T Consensus       176 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  223 (391)
T PRK14284        176 KVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT------------DPCSVCRGQGRI  223 (391)
T ss_pred             eecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC------------CcCCCCCCccee
Confidence            77888888886           47888888887643            468888888876

>PRK14282 chaperone protein DnaJ; Provisional

Probab=96.05  E-value=0.0048  Score=55.89  Aligned_cols=37  Identities=41%  Similarity=1.014  Sum_probs=31.2

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|+.|+|+|.               ..|+.|+|+|+.+.            ..|..|.|.|.+
T Consensus       170 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  221 (369)
T PRK14282        170 VTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG------------EYCHECGGSGRI  221 (369)
T ss_pred             cCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC------------CCCCCCCCceeE
Confidence            78999999986               36999999998753            569999999965

>PRK10767 chaperone protein DnaJ; Provisional

Probab=96.04  E-value=0.0044  Score=56.05  Aligned_cols=37  Identities=35%  Similarity=0.934  Sum_probs=29.5

Q ss_pred             eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|..|+|+|.           .+|+.|+|+|+.+.            ..|..|.|+|.+
T Consensus       160 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  207 (371)
T PRK10767        160 KTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK------------DPCKKCHGQGRV  207 (371)
T ss_pred             ccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC------------CCCCCCCCCceE
Confidence            67999999886           35999999988643            569999998876

>PRK14280 chaperone protein DnaJ; Provisional

Probab=96.03  E-value=0.0043  Score=56.37  Aligned_cols=37  Identities=46%  Similarity=1.127  Sum_probs=27.7

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|..|+|+|.               ..|+.|+|+|..+.            ..|+.|.|+|.+
T Consensus       161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  212 (376)
T PRK14280        161 ETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK------------EKCPTCHGKGKV  212 (376)
T ss_pred             ccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec------------CCCCCCCCceEE
Confidence            67888888874               36888888887643            458888888866

>PRK14294 chaperone protein DnaJ; Provisional

Probab=95.99  E-value=0.0047  Score=55.87  Aligned_cols=37  Identities=41%  Similarity=1.036  Sum_probs=29.7

Q ss_pred             eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|..|+|.|.           ..|+.|+|+|+.+.            ..|..|.|.|.+
T Consensus       162 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  209 (366)
T PRK14294        162 TTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV------------SPCKTCHGQGRV  209 (366)
T ss_pred             ccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC------------cCCCCCCCceEe
Confidence            67889998886           47999999988643            569999988876

>PRK14276 chaperone protein DnaJ; Provisional

Probab=95.91  E-value=0.0046  Score=56.31  Aligned_cols=37  Identities=46%  Similarity=0.977  Sum_probs=26.6

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|+.|+|+|.               .+|+.|+|+|..+.            ..|..|.|.|.+
T Consensus       164 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~  215 (380)
T PRK14276        164 VTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK------------EPCQTCHGTGHE  215 (380)
T ss_pred             ccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc------------CCCCCCCCceEE
Confidence            67888888775               35888888887643            458888887765

>PRK14277 chaperone protein DnaJ; Provisional

Probab=95.90  E-value=0.0056  Score=55.84  Aligned_cols=37  Identities=38%  Similarity=0.922  Sum_probs=31.1

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|..|+|.|.               .+|+.|+|+|..+.            ..|..|.|+|.+
T Consensus       173 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  224 (386)
T PRK14277        173 VTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT------------DPCNKCGGTGRI  224 (386)
T ss_pred             ccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc------------CCCCCCCCCcEE
Confidence            78999999986               36999999998754            569999999986

>PRK14290 chaperone protein DnaJ; Provisional

Probab=95.90  E-value=0.0066  Score=54.91  Aligned_cols=37  Identities=38%  Similarity=1.074  Sum_probs=30.5

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|+.|+|.|.               ..|+.|+|.|+...            ..|+.|.|+|.+
T Consensus       166 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  217 (365)
T PRK14290        166 ITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE------------EKCPRCNGTGTV  217 (365)
T ss_pred             ccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc------------CCCCCCCCceeE
Confidence            77999999984               47999999998643            579999999886

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=95.81  E-value=0.007  Score=56.18  Aligned_cols=39  Identities=36%  Similarity=0.836  Sum_probs=29.0

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|..|+|+|.               .+|+.|+|+|+.+..          ...|..|.|+|.+
T Consensus       167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~----------~~~C~~C~G~g~v  220 (421)
T PTZ00037        167 VDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE----------SKKCKNCSGKGVK  220 (421)
T ss_pred             ccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc----------cccCCcCCCccee
Confidence            67888888883               368888888876642          3568888888876

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=95.80  E-value=0.0066  Score=54.47  Aligned_cols=38  Identities=39%  Similarity=1.056  Sum_probs=30.9

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV  148 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i  148 (185)
                      ..|..|+|+|.               ..|+.|+|+|+.+.            ..|..|.|.|.+.
T Consensus       161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~  213 (354)
T TIGR02349       161 KTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK------------EPCSTCKGKGRVK  213 (354)
T ss_pred             ccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC------------CCCCCCCCCcEec
Confidence            77999999885               47999999998753            4699999999763

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14281 chaperone protein DnaJ; Provisional

Probab=95.79  E-value=0.007  Score=55.44  Aligned_cols=38  Identities=42%  Similarity=1.058  Sum_probs=30.9

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV  148 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i  148 (185)
                      ..|..|+|.|.               .+|+.|+|+|..+.            ..|..|.|.|.+.
T Consensus       180 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~  232 (397)
T PRK14281        180 ETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------------DRCPACYGEGIKQ  232 (397)
T ss_pred             ccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------------CCCCCCCCCccEe
Confidence            77999999985               46999999998754            5699999998873

>PRK14289 chaperone protein DnaJ; Provisional

Probab=95.73  E-value=0.0062  Score=55.45  Aligned_cols=37  Identities=38%  Similarity=0.928  Sum_probs=27.7

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|..|+|.|.               ..|+.|+|+|+.+.            ..|..|.|+|.+
T Consensus       172 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  223 (386)
T PRK14289        172 ETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK------------KKCKKCGGEGIV  223 (386)
T ss_pred             CcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC------------cCCCCCCCCcEE
Confidence            67888888876               25888888887643            458888888865

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=95.65  E-value=0.012  Score=45.69  Aligned_cols=26  Identities=35%  Similarity=0.887  Sum_probs=22.2

Q ss_pred             eecCCCCCccceeCCCCCcccEEEEe
Q 042059           99 PVCRNCGGSGAVLCDMCGGTGKWKAL  124 (185)
Q Consensus        99 ~~C~~C~GtG~~~C~~C~GsG~~~~~  124 (185)
                      ..|+.|+|+|...|+.|.|+|.+..+
T Consensus        76 ~~C~~C~G~Gk~~C~~C~G~G~~~~~  101 (111)
T PLN03165         76 SKCINCDGAGSLTCTTCQGSGIQPRY  101 (111)
T ss_pred             EECCCCCCcceeeCCCCCCCEEEeee
Confidence            88999999998889999999986653

>PRK14293 chaperone protein DnaJ; Provisional

Probab=95.61  E-value=0.0092  Score=54.17  Aligned_cols=37  Identities=38%  Similarity=0.930  Sum_probs=30.5

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|..|+|+|.               ..|+.|+|.|+.+.            ..|..|.|+|.+
T Consensus       161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  212 (374)
T PRK14293        161 TTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE------------DPCDACGGQGVK  212 (374)
T ss_pred             eeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec------------cCCCCCCCCccc
Confidence            78999999986               36999999998753            569999999876

>PRK14287 chaperone protein DnaJ; Provisional

Probab=95.35  E-value=0.0098  Score=54.04  Aligned_cols=38  Identities=45%  Similarity=1.059  Sum_probs=29.7

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV  148 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i  148 (185)
                      ..|..|+|+|.               ..|+.|+|+|.++.            ..|..|.|.|.+.
T Consensus       156 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~  208 (371)
T PRK14287        156 ETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK------------QKCATCGGKGKVR  208 (371)
T ss_pred             cccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc------------ccCCCCCCeeEEe
Confidence            67889998885               46888999888653            5688898888764

>PRK14283 chaperone protein DnaJ; Provisional

Probab=95.26  E-value=0.013  Score=53.30  Aligned_cols=37  Identities=41%  Similarity=1.022  Sum_probs=28.1

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|+.|+|+|.               .+|+.|+|+|+.+.            ..|..|.|+|.+
T Consensus       164 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  215 (378)
T PRK14283        164 KTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE------------KPCSNCHGKGVV  215 (378)
T ss_pred             ccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC------------CCCCCCCCceee
Confidence            67888888876               35888888887643            458888888876

>PRK14291 chaperone protein DnaJ; Provisional

Probab=95.11  E-value=0.018  Score=52.47  Aligned_cols=36  Identities=47%  Similarity=1.123  Sum_probs=29.9

Q ss_pred             eecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|+.|+|+|.           ..|+.|+|+|. +.            ..|..|.|.|.+
T Consensus       174 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~------------~~C~~C~G~g~v  220 (382)
T PRK14291        174 KVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LR------------EPCSKCNGRGLV  220 (382)
T ss_pred             ccCCCCCCceEEEEecceEEEEecCCCCCCceE-Ec------------cCCCCCCCCceE
Confidence            78999999986           47999999995 21            569999999976

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=95.08  E-value=0.025  Score=45.60  Aligned_cols=48  Identities=38%  Similarity=0.780  Sum_probs=35.9

Q ss_pred             eecCCCCCccceeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEEC
Q 042059           99 PVCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVC  149 (185)
Q Consensus        99 ~~C~~C~GtG~~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~iC  149 (185)
                      ..|..|.|.+.+.|..|+|+=+++.....   ......+|+.|+-.|.+.|
T Consensus       100 ~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~---~~~~~~rC~~Cnengl~~c  147 (147)
T cd03031         100 GVCEGCGGARFVPCSECNGSCKVFAENAT---AAGGFLRCPECNENGLVRC  147 (147)
T ss_pred             CCCCCCCCcCeEECCCCCCcceEEeccCc---ccccEEECCCCCccccccC
Confidence            57999999999999999999888653210   1123478888888887655

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PRK14292 chaperone protein DnaJ; Provisional

Probab=95.05  E-value=0.018  Score=52.19  Aligned_cols=37  Identities=38%  Similarity=0.934  Sum_probs=27.6

Q ss_pred             eecCCCCCccc---------------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059           99 PVCRNCGGSGA---------------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus        99 ~~C~~C~GtG~---------------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      ..|..|+|+|.               ..|+.|+|.|+.+.            ..|..|.|+|.+
T Consensus       158 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v  209 (371)
T PRK14292        158 KTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT------------DPCTVCRGRGRT  209 (371)
T ss_pred             ccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC------------CCCCCCCCceEE
Confidence            67888888875               25888888887643            568888888865

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.04  E-value=0.016  Score=48.71  Aligned_cols=25  Identities=40%  Similarity=1.038  Sum_probs=13.3

Q ss_pred             eecCCCCCccc-----eeCCCCCcccEEEE
Q 042059           99 PVCRNCGGSGA-----VLCDMCGGTGKWKA  123 (185)
Q Consensus        99 ~~C~~C~GtG~-----~~C~~C~GsG~~~~  123 (185)
                      ..|+.|+|+|.     ..|+.|+|+|++..
T Consensus       100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~  129 (186)
T TIGR02642       100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRP  129 (186)
T ss_pred             CcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence            55555555555     13555555555443

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=87.91  E-value=0.29  Score=44.61  Aligned_cols=23  Identities=39%  Similarity=0.918  Sum_probs=15.3

Q ss_pred             eecCCCCCccce-----eCCCCCcccEE
Q 042059           99 PVCRNCGGSGAV-----LCDMCGGTGKW  121 (185)
Q Consensus        99 ~~C~~C~GtG~~-----~C~~C~GsG~~  121 (185)
                      ..|..|+|+|..     .|+.|+|++++
T Consensus       171 ~~C~~C~G~G~~~~~kd~C~~C~G~~~v  198 (337)
T KOG0712|consen  171 LVCDSCNGSGETISLKDRCKTCSGAKVV  198 (337)
T ss_pred             eEeccCCCccccccccccCcccccchhh
Confidence            667777777664     66677766664

>PRK14892 putative transcription elongation factor Elf1; Provisional

Probab=86.31  E-value=0.82  Score=34.81  Aligned_cols=40  Identities=15%  Similarity=0.182  Sum_probs=28.2

Q ss_pred             CCceEECCCCCCceEEeeeeEEecC-Ch-hhhhhhccCccccC
Q 042059          143 GRGKLVCPVCLGTGLPNNKGLLRRP-DA-RKLLDKMYNGRLLP  183 (185)
Q Consensus       143 G~G~~iC~~C~G~G~i~~~k~L~~p-~~-~~~~~~m~~g~l~~  183 (185)
                      |.+.+.|+.|. ..+......|.-| |+ -+|+|+.+.|+|-+
T Consensus        39 ~~~h~~C~~CG-~y~~~~V~~l~epIDVY~~wiD~~~eg~i~~   80 (99)
T PRK14892         39 NIAIITCGNCG-LYTEFEVPSVYDEVDVYNKFIDLYLEGKIEI   80 (99)
T ss_pred             CcceEECCCCC-CccCEECCccccchhhHHHHHHHHHhcCCCc
Confidence            45666799995 4444444555555 66 68999999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	2e-05
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	3e-05
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	5e-05

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 12/68 (17%)

Query: 100 VCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEF-TECPNCYGRGKLV----- 148
           +C+ C G G        C  C G G  K + R+    +  F TEC  C+G G ++     
Sbjct: 40  LCKECEGRGGKKGAVKKCTSCNGQG-IKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDR 98

Query: 149 CPVCLGTG 156
           C  C G  
Sbjct: 99  CKSCNGKK 106

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 13/65 (20%)

Query: 101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPV 151
           C  C G G         C  CGG+G            V   T C  C GRG ++   C V
Sbjct: 31  CERCNGKGNEPGTKVQHCHYCGGSGM---ETINTGPFVMRST-CRRCGGRGSIIISPCVV 86

Query: 152 CLGTG 156
           C G G
Sbjct: 87  CRGAG 91

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Length = 79

 Score = 39.2 bits (92), Expect = 5e-05
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 13/65 (20%)

Query: 101 CRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPV 151
           C  C GSGA        C  C G+G+   +  ++     + T CP+C GRG L+   C  
Sbjct: 14  CDVCHGSGAKPGTQPQTCPTCHGSGQ---VQMRQGFFAVQQT-CPHCQGRGTLIKDPCNK 69

Query: 152 CLGTG 156
           C G G
Sbjct: 70  CHGHG 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.73
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.72
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.18
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.51
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.4
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.31
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	96.87
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.78
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	96.42
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.38
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	95.98
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	94.43
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	93.6

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=2.4e-18  Score=128.19  Aligned_cols=85  Identities=28%  Similarity=0.556  Sum_probs=77.0

Q ss_pred             cCCeeEEEEeeeehhcCCcee-------eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCC
Q 042059           78 ISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGR  144 (185)
Q Consensus        78 g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~  144 (185)
                      |.|+.+.|.|+|+|||+|.++       +.|..|+|+|.      .+|+.|+|+|++...+    |+|+.+.+|+.|+|+
T Consensus         1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~   76 (104)
T 2ctt_A            1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRRCGGR   76 (104)
T ss_dssp             CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSSSSSS
T ss_pred             CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCcCCCc
Confidence            578999999999999999987       99999999996      7899999999877643    678888999999999


Q ss_pred             ceEE---CCCCCCceEEeeeeEEec
Q 042059          145 GKLV---CPVCLGTGLPNNKGLLRR  166 (185)
Q Consensus       145 G~~i---C~~C~G~G~i~~~k~L~~  166 (185)
                      |+++   |+.|+|.|++++++.|++
T Consensus        77 G~~i~~~C~~C~G~G~v~~~k~l~V  101 (104)
T 2ctt_A           77 GSIIISPCVVCRGAGQAKQKKRSGP  101 (104)
T ss_dssp             SEECSSCCSSSSSCSEECCCCSSCC
T ss_pred             ceECCCcCCCCCCeeEEEEEEEEEE
Confidence            9997   999999999999888876

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.72  E-value=4.7e-18  Score=144.25  Aligned_cols=103  Identities=22%  Similarity=0.415  Sum_probs=88.8

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee-------eecCCCCCccc-----eeCCCCCcccEEEEeeecCCCCceeeeecCCCC
Q 042059           75 IALISNSGSLVSVPEAIALDGKER-------PVCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCY  142 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k-------~~C~~C~GtG~-----~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~  142 (185)
                      +.+|+|+.+.|.|+|+|+|+|.++       +.|..|+|+|+     .+|+.|+|+|++....+.++.+++.+.+|+.|+
T Consensus         8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~   87 (248)
T 1nlt_A            8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCH   87 (248)
T ss_dssp             CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCS
T ss_pred             CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCC
Confidence            467999999999999999999987       79999999996     789999999998876666552235789999999


Q ss_pred             CCceEE-----CCCCCCceEEeeeeEEecCChhhhhhhccCccc
Q 042059          143 GRGKLV-----CPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRL  181 (185)
Q Consensus       143 G~G~~i-----C~~C~G~G~i~~~k~L~~p~~~~~~~~m~~g~l  181 (185)
                      |+|+++     |+.|+|.|++.+++.|++    +|..+|.+|+-
T Consensus        88 G~G~~i~~~~~C~~C~G~g~~~~~~~l~V----~Ip~G~~~G~~  127 (248)
T 1nlt_A           88 GTGDIIDPKDRCKSCNGKKVENERKILEV----HVEPGMKDGQR  127 (248)
T ss_dssp             SSSSCCCTTSBCSSSTTSCEEEEEEEEEE----EECTTCCTTCE
T ss_pred             CcCEEeccCCCCcccCCCceEeeeEEEEE----EECCCccCCCE
Confidence            999776     999999999999999998    66667776653

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.18  E-value=2.7e-11  Score=85.22  Aligned_cols=58  Identities=36%  Similarity=0.784  Sum_probs=51.5

Q ss_pred             eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE---CCCCCCceEEee
Q 042059           99 PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTGLPNN  160 (185)
Q Consensus        99 ~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i---C~~C~G~G~i~~  160 (185)
                      +.|+.|+|+|.      .+|+.|+|+|.++..+    |+|+.+.+|+.|+|.|+++   |+.|+|.|++.+
T Consensus        12 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~~   78 (79)
T 1exk_A           12 EECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER   78 (79)
T ss_dssp             EECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred             eECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEEee
Confidence            89999999996      6899999999987633    7788889999999999995   999999999865

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.51  E-value=4.6e-05  Score=52.96  Aligned_cols=55  Identities=33%  Similarity=0.773  Sum_probs=40.6

Q ss_pred             cceeeccccCCccccCCeeEEEEeeeehhcCCceeeecCCCCCccce-----------eCCCCCcccEEEEeeecCCCCc
Q 042059           64 RRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGAV-----------LCDMCGGTGKWKALNRKRAKDV  132 (185)
Q Consensus        64 r~~c~~c~~~~~~~g~Di~~~l~Vslee~~~G~~k~~C~~C~GtG~~-----------~C~~C~GsG~~~~~~r~~~G~~  132 (185)
                      ...|..|.++-..                 .+.....|+.|+|+|.+           .|+.|+|+|.++.         
T Consensus        11 ~~~C~~C~G~G~~-----------------~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~---------   64 (79)
T 1exk_A           11 LEECDVCHGSGAK-----------------PGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK---------   64 (79)
T ss_dssp             EEECGGGTTTSBC-----------------SSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS---------
T ss_pred             ceECCCCcccccC-----------------CCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC---------
Confidence            3478889888211                 12223789999999962           7999999998642         


Q ss_pred             eeeeecCCCCCCceE
Q 042059          133 YEFTECPNCYGRGKL  147 (185)
Q Consensus       133 ~~~~~C~~C~G~G~~  147 (185)
                         .+|+.|+|.|++
T Consensus        65 ---~~C~~C~G~G~~   76 (79)
T 1exk_A           65 ---DPCNKCHGHGRV   76 (79)
T ss_dssp             ---SBCGGGTTSSEE
T ss_pred             ---CcCCCCCCeEEE
Confidence               579999999976

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.40  E-value=0.0001  Score=54.13  Aligned_cols=56  Identities=32%  Similarity=0.692  Sum_probs=42.7

Q ss_pred             cceeeccccCCccccCCeeEEEEeeeehhcCCceeeecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCc
Q 042059           64 RRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDV  132 (185)
Q Consensus        64 r~~c~~c~~~~~~~g~Di~~~l~Vslee~~~G~~k~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~  132 (185)
                      ...|..|.|+-.                 ..|.....|+.|+|+|.           .+|+.|+|+|.++.         
T Consensus        28 ~~~C~~C~G~G~-----------------~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~---------   81 (104)
T 2ctt_A           28 MDTCERCNGKGN-----------------EPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII---------   81 (104)
T ss_dssp             CEECSSSSSSSS-----------------CTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS---------
T ss_pred             eeECCCCcCCcc-----------------CCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC---------
Confidence            458999999821                 12444478999999995           47999999998653         


Q ss_pred             eeeeecCCCCCCceEE
Q 042059          133 YEFTECPNCYGRGKLV  148 (185)
Q Consensus       133 ~~~~~C~~C~G~G~~i  148 (185)
                         .+|+.|+|.|++.
T Consensus        82 ---~~C~~C~G~G~v~   94 (104)
T 2ctt_A           82 ---SPCVVCRGAGQAK   94 (104)
T ss_dssp             ---SCCSSSSSCSEEC
T ss_pred             ---CcCCCCCCeeEEE
Confidence               6799999999863

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.31  E-value=8.4e-05  Score=49.46  Aligned_cols=29  Identities=45%  Similarity=0.933  Sum_probs=25.3

Q ss_pred             eeeecCCCCCCceEE---CCCCCCceEEeeee
Q 042059          134 EFTECPNCYGRGKLV---CPVCLGTGLPNNKG  162 (185)
Q Consensus       134 ~~~~C~~C~G~G~~i---C~~C~G~G~i~~~k  162 (185)
                      .+.+|+.|+|+|+++   |+.|+|.|++.+.+
T Consensus         8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~~   39 (53)
T 3lcz_A            8 LETTCPNCNGSGREEPEPCPKCLGKGVILTAQ   39 (53)
T ss_dssp             HEEECTTTTTSCEETTEECTTTTTSSEEECHH
T ss_pred             eeccCcCCcccccCCCCcCCCCCCcEEEEEEe
Confidence            578999999999986   99999999987654

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=96.87  E-value=0.00048  Score=55.41  Aligned_cols=21  Identities=10%  Similarity=-0.070  Sum_probs=16.4

Q ss_pred             cCCeeEEEEeeeehhcCCcee
Q 042059           78 ISNSGSLVSVPEAIALDGKER   98 (185)
Q Consensus        78 g~Di~~~l~Vslee~~~G~~k   98 (185)
                      ++|+.+.|.|+|+|+|+|+++
T Consensus         2 ~~d~~~~l~islee~~~G~~k   22 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTK   22 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEE
T ss_pred             CCCEEEEEEEEHHHhcCCcEE
Confidence            579999999999999999987

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.78  E-value=0.00019  Score=47.72  Aligned_cols=26  Identities=27%  Similarity=0.691  Sum_probs=18.1

Q ss_pred             eecCCCCCccc---eeCCCCCcccEEEEe
Q 042059           99 PVCRNCGGSGA---VLCDMCGGTGKWKAL  124 (185)
Q Consensus        99 ~~C~~C~GtG~---~~C~~C~GsG~~~~~  124 (185)
                      ..|+.|+|+|.   ..|+.|+|.|+++..
T Consensus        10 ~~C~~C~GsG~~~~~~C~~C~G~G~v~~~   38 (53)
T 2bx9_A           10 VACPKCERAGEIEGTPCPACSGKGVILTA   38 (53)
T ss_dssp             EECTTTTTSSEETTEECTTTTTSSEEECH
T ss_pred             ccCCCCcceeccCCCCCccCCCCccEEEE
Confidence            56777777776   567777777776553

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=96.42  E-value=0.00091  Score=56.24  Aligned_cols=23  Identities=30%  Similarity=0.706  Sum_probs=13.0

Q ss_pred             eecCCCCCccc-----eeCCCCCcccEE
Q 042059           99 PVCRNCGGSGA-----VLCDMCGGTGKW  121 (185)
Q Consensus        99 ~~C~~C~GtG~-----~~C~~C~GsG~~  121 (185)
                      ..|+.|+|+|.     ..|+.|+|.|++
T Consensus        81 ~~C~~C~G~G~~i~~~~~C~~C~G~g~~  108 (248)
T 1nlt_A           81 TECDVCHGTGDIIDPKDRCKSCNGKKVE  108 (248)
T ss_dssp             CSCTTCSSSSSCCCTTSBCSSSTTSCEE
T ss_pred             EcCCCCCCcCEEeccCCCCcccCCCceE
Confidence            55666666663     446666666654

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.38  E-value=0.0022  Score=42.47  Aligned_cols=26  Identities=35%  Similarity=0.903  Sum_probs=19.9

Q ss_pred             eeecCCCCCCceEE---CCCCCCceEEee
Q 042059          135 FTECPNCYGRGKLV---CPVCLGTGLPNN  160 (185)
Q Consensus       135 ~~~C~~C~G~G~~i---C~~C~G~G~i~~  160 (185)
                      ..+|+.|+|.|.++   |+.|+|.|.+..
T Consensus         9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~   37 (53)
T 2bx9_A            9 EVACPKCERAGEIEGTPCPACSGKGVILT   37 (53)
T ss_dssp             EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred             cccCCCCcceeccCCCCCccCCCCccEEE
Confidence            46788888888765   888888888764

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=95.98  E-value=0.0046  Score=40.95  Aligned_cols=25  Identities=40%  Similarity=0.824  Sum_probs=19.2

Q ss_pred             eecCCCCCccc---eeCCCCCcccEEEE
Q 042059           99 PVCRNCGGSGA---VLCDMCGGTGKWKA  123 (185)
Q Consensus        99 ~~C~~C~GtG~---~~C~~C~GsG~~~~  123 (185)
                      ..|+.|+|+|.   ..|+.|+|.|.+..
T Consensus        10 ~~C~~C~GsG~~i~~~C~~C~G~G~v~~   37 (53)
T 3lcz_A           10 TTCPNCNGSGREEPEPCPKCLGKGVILT   37 (53)
T ss_dssp             EECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred             ccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence            67888888887   67888888887654

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=94.43  E-value=0.0018  Score=61.99  Aligned_cols=65  Identities=14%  Similarity=0.220  Sum_probs=47.0

Q ss_pred             eEEEEeeeehhcCCcee-------eecCCCCCccc---------eeCCCCCcccEEE--------EeeecCCCCc-eeee
Q 042059           82 GSLVSVPEAIALDGKER-------PVCRNCGGSGA---------VLCDMCGGTGKWK--------ALNRKRAKDV-YEFT  136 (185)
Q Consensus        82 ~~~l~Vslee~~~G~~k-------~~C~~C~GtG~---------~~C~~C~GsG~~~--------~~~r~~~G~~-~~~~  136 (185)
                      .+.++|+|+|++.|.++       ..|..|+|+|.         ..|+.|+|+....        .....+.|.| +...
T Consensus       168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~  247 (669)
T 3pmq_A          168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS  247 (669)
T ss_dssp             SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred             eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence            57889999999999887       89999999875         5799999994211        1111223333 3457


Q ss_pred             ecCCCCCCce
Q 042059          137 ECPNCYGRGK  146 (185)
Q Consensus       137 ~C~~C~G~G~  146 (185)
                      .|..|+..+.
T Consensus       248 ~C~~CH~~~~  257 (669)
T 3pmq_A          248 NCQTCHADNP  257 (669)
T ss_dssp             CCTTTSCCCT
T ss_pred             cchhhcCCcc
Confidence            8999998875

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=93.60  E-value=0.035  Score=44.28  Aligned_cols=22  Identities=14%  Similarity=-0.028  Sum_probs=19.2

Q ss_pred             ccCCeeEEEEeeeehhcCCcee
Q 042059           77 LISNSGSLVSVPEAIALDGKER   98 (185)
Q Consensus        77 ~g~Di~~~l~Vslee~~~G~~k   98 (185)
                      .++|+.+.|.|+|+|+|+|+++
T Consensus         2 ~g~d~~~~l~islee~~~G~~k   23 (180)
T 2q2g_A            2 APRSHEVPLLVTLEELYLGKRK   23 (180)
T ss_dssp             --CEEEEEEEECHHHHHHCEEE
T ss_pred             CCCCEEEEEEeeHHHhcCCcEE
Confidence            4789999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d1nlta3	74	g.54.1.1 (A:139-212) Mitochondrial protein import	0.002
d1exka_	79	g.54.1.1 (A:) Cysteine-rich domain of the chaperon	0.002

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.5 bits (76), Expect = 0.002
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 100 VCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV-----C 149
           +C+ C G G        C  C G G      +         TEC  C+G G ++     C
Sbjct: 4   LCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRC 63

Query: 150 PVCLGTG 156
             C G  
Sbjct: 64  KSCNGKK 70

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Length = 79

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

 Score = 33.5 bits (76), Expect = 0.002
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 100 VCRNCGGSGAV--LCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLG 154
            C  C GSGA          T       + R         CP+C GRG L+   C  C G
Sbjct: 13  ECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHG 72

Query: 155 TG 156
            G
Sbjct: 73  HG 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.34
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.26
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.71
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.3
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	96.59
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	94.1
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	92.92

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=3.8e-13  Score=93.49  Aligned_cols=62  Identities=29%  Similarity=0.634  Sum_probs=55.0

Q ss_pred             eecCCCCCccc-----eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE-----CCCCCCceEEee
Q 042059           99 PVCRNCGGSGA-----VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV-----CPVCLGTGLPNN  160 (185)
Q Consensus        99 ~~C~~C~GtG~-----~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i-----C~~C~G~G~i~~  160 (185)
                      +.|+.|+|+|+     .+|+.|+|+|++....+.+++.++...+|+.|+|+|+++     |+.|+|.|+++|
T Consensus         3 v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~E   74 (74)
T d1nlta3           3 ILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENE   74 (74)
T ss_dssp             EECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred             cCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeCC
Confidence            68999999997     679999999999888777776667889999999999875     999999998865

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=2.8e-12  Score=89.80  Aligned_cols=58  Identities=38%  Similarity=0.818  Sum_probs=51.2

Q ss_pred             eecCCCCCccc------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE---CCCCCCceEEee
Q 042059           99 PVCRNCGGSGA------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTGLPNN  160 (185)
Q Consensus        99 ~~C~~C~GtG~------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i---C~~C~G~G~i~~  160 (185)
                      +.|+.|+|+|.      ..|+.|+|+|++..    ..++++.+++|+.|+|+|+++   |+.|+|+|++++
T Consensus        12 ~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~----~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~k   78 (79)
T d1exka_          12 EECDVCHGSGAKPGTQPQTCPTCHGSGQVQM----RQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER   78 (79)
T ss_dssp             EECGGGTTTSBCSSSCCEECTTTTTSSEEEE----EETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred             ccCCCCcCcccCCCccceeCCCccceeEEEE----ecccceeeEECcccCcceeECCCCCCCCCCceEeec
Confidence            89999999996      67999999998754    347788889999999999997   999999999865

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=8.9e-06  Score=55.85  Aligned_cols=56  Identities=30%  Similarity=0.709  Sum_probs=42.4

Q ss_pred             cceeeccccCCccccCCeeEEEEeeeehhcCCceeeecCCCCCccc-----------eeCCCCCcccEEEEeeecCCCCc
Q 042059           64 RRKCLTCICSTIALISNSGSLVSVPEAIALDGKERPVCRNCGGSGA-----------VLCDMCGGTGKWKALNRKRAKDV  132 (185)
Q Consensus        64 r~~c~~c~~~~~~~g~Di~~~l~Vslee~~~G~~k~~C~~C~GtG~-----------~~C~~C~GsG~~~~~~r~~~G~~  132 (185)
                      ...|..|.++-.                 ..|.....|+.|+|+|.           .+|+.|+|+|+++.         
T Consensus        11 ~~~C~~C~G~G~-----------------~~g~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~---------   64 (79)
T d1exka_          11 LEECDVCHGSGA-----------------KPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK---------   64 (79)
T ss_dssp             EEECGGGTTTSB-----------------CSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS---------
T ss_pred             eccCCCCcCccc-----------------CCCccceeCCCccceeEEEEecccceeeEECcccCcceeECC---------
Confidence            457888988821                 12333478999999996           57999999999753         


Q ss_pred             eeeeecCCCCCCceEE
Q 042059          133 YEFTECPNCYGRGKLV  148 (185)
Q Consensus       133 ~~~~~C~~C~G~G~~i  148 (185)
                         .+|..|.|+|++.
T Consensus        65 ---~~C~~C~G~G~v~   77 (79)
T d1exka_          65 ---DPCNKCHGHGRVE   77 (79)
T ss_dssp             ---SBCGGGTTSSEEE
T ss_pred             ---CCCCCCCCceEee
Confidence               5799999999863

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=3.3e-05  Score=52.42  Aligned_cols=27  Identities=33%  Similarity=0.732  Sum_probs=14.4

Q ss_pred             eCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceE
Q 042059          111 LCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL  147 (185)
Q Consensus       111 ~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~  147 (185)
                      .|+.|+|+|+++.          ...+|..|.|+|.+
T Consensus        46 ~C~~C~G~G~~i~----------~~~~C~~C~G~g~v   72 (74)
T d1nlta3          46 ECDVCHGTGDIID----------PKDRCKSCNGKKVE   72 (74)
T ss_dssp             SCTTCSSSSSCCC----------TTSBCSSSTTSCEE
T ss_pred             ECccCccceEEeC----------CCCCCCCCCCeeEe
Confidence            4666666665432          12356666666643

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=96.59  E-value=1.4e-05  Score=55.10  Aligned_cols=61  Identities=18%  Similarity=0.343  Sum_probs=45.2

Q ss_pred             eecCCCCCccc---------eeCCCCCcccEEEEeeecCCCCceeeeecCCCCCCceEE---CCCCCCceEEe
Q 042059           99 PVCRNCGGSGA---------VLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTGLPN  159 (185)
Q Consensus        99 ~~C~~C~GtG~---------~~C~~C~GsG~~~~~~r~~~G~~~~~~~C~~C~G~G~~i---C~~C~G~G~i~  159 (185)
                      ..|..|+|.|.         ..|..|+|.|.........++.+..-..|..|.|.|..+   |..|++.|...
T Consensus        12 ~~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~~   84 (90)
T d1m1qa_          12 GGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRTS   84 (90)
T ss_dssp             TCGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCCH
T ss_pred             CCCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCccc
Confidence            35889988875         359999999875544433444455678899999998765   99999998653

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.10  E-value=0.0051  Score=41.27  Aligned_cols=28  Identities=14%  Similarity=0.036  Sum_probs=21.9

Q ss_pred             CCeeEEEEeeeehhcCCcee---eecCCCCC
Q 042059           79 SNSGSLVSVPEAIALDGKER---PVCRNCGG  106 (185)
Q Consensus        79 ~Di~~~l~Vslee~~~G~~k---~~C~~C~G  106 (185)
                      +|+.+.|.|||||+|+|+++   ..|..|+|
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~~~g   31 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHG   31 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEETTT
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceecccC
Confidence            47899999999999999987   44444433

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.92  E-value=0.018  Score=38.03  Aligned_cols=24  Identities=8%  Similarity=-0.065  Sum_probs=22.2

Q ss_pred             ccccCCeeEEEEeeeehhcCCcee
Q 042059           75 IALISNSGSLVSVPEAIALDGKER   98 (185)
Q Consensus        75 ~~~g~Di~~~l~Vslee~~~G~~k   98 (185)
                      |.++.|+.+.|.|+|+|||.|.++
T Consensus         1 Prkg~di~~~l~isleea~~G~~~   24 (74)
T d1nlta1           1 PQRGKDIKHEISASLEELYKGRTA   24 (74)
T ss_dssp             CCBCCCEEEEEEECTTHHHHCEEE
T ss_pred             CCCCCCEEEEEEecHHHHHhhccc
Confidence            467899999999999999999987