Citrus Sinensis ID: 042063
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 575 | 2.2.26 [Sep-21-2011] | |||||||
| P17069 | 576 | Isocitrate lyase OS=Gossy | N/A | no | 1.0 | 0.998 | 0.897 | 0.0 | |
| P15479 | 576 | Isocitrate lyase OS=Ricin | N/A | no | 1.0 | 0.998 | 0.890 | 0.0 | |
| P93110 | 576 | Isocitrate lyase OS=Cucur | N/A | no | 1.0 | 0.998 | 0.883 | 0.0 | |
| P49296 | 576 | Isocitrate lyase OS=Cucum | N/A | no | 1.0 | 0.998 | 0.881 | 0.0 | |
| P49297 | 575 | Isocitrate lyase OS=Solan | N/A | no | 1.0 | 1.0 | 0.852 | 0.0 | |
| P25248 | 576 | Isocitrate lyase OS=Brass | N/A | no | 1.0 | 0.998 | 0.840 | 0.0 | |
| P28297 | 576 | Isocitrate lyase OS=Arabi | yes | no | 1.0 | 0.998 | 0.829 | 0.0 | |
| P45457 | 557 | Isocitrate lyase 2 (Fragm | yes | no | 0.968 | 1.0 | 0.815 | 0.0 | |
| P45456 | 558 | Isocitrate lyase 1 (Fragm | yes | no | 0.968 | 0.998 | 0.813 | 0.0 | |
| Q43097 | 580 | Isocitrate lyase OS=Pinus | N/A | no | 0.994 | 0.986 | 0.786 | 0.0 |
| >sp|P17069|ACEA_GOSHI Isocitrate lyase OS=Gossypium hirsutum PE=2 SV=1 | Back alignment and function desciption |
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Score = 1101 bits (2847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/576 (89%), Positives = 551/576 (95%), Gaps = 1/576 (0%)
Query: 1 MAASYSVPSMILEEEGRFEAEVAEVQAWWNSERFRLTRRPYSARDVVALRGSLRQSYGSN 60
MAAS+SVPSMI+EEEGRFE EVAEVQAWWNSERF+LTRRPYSARDVVALRGSL+QSYGSN
Sbjct: 1 MAASFSVPSMIMEEEGRFETEVAEVQAWWNSERFKLTRRPYSARDVVALRGSLKQSYGSN 60
Query: 61 EMAKKLWRTLKTHQANGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSSTHTSTNEPGP 120
EMAKKLW TLKTHQANGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSSTHT+TNEPGP
Sbjct: 61 EMAKKLWTTLKTHQANGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSSTHTTTNEPGP 120
Query: 121 DLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGF 180
DLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTP VDYLKPIIADGDTGF
Sbjct: 121 DLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPYVDYLKPIIADGDTGF 180
Query: 181 GGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDV 240
GGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVA+SEHINRLVAARLQFDV
Sbjct: 181 GGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAVSEHINRLVAARLQFDV 240
Query: 241 MGVETVLVARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAE 300
MGVETVLVARTDA AATLIQTNVDTRDHQFILG TNPNLRGK+LA++LAE MAAGK G +
Sbjct: 241 MGVETVLVARTDAVAATLIQTNVDTRDHQFILGATNPNLRGKSLANMLAEGMAAGKNGPQ 300
Query: 301 LQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREI 360
LQAIEDNW+A+A LKTFSECV+DA+ ++N E EKRRR+NEWMN SSYDKCLS+EQ REI
Sbjct: 301 LQAIEDNWLAIAQLKTFSECVMDAIKSMNITEDEKRRRMNEWMNHSSYDKCLSNEQAREI 360
Query: 361 AERLGLKNLFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTK 420
AERLGL+NLFWDWDLPRTREGFYRF+GSV AAI+RGWAFAPHADLIWMET+SPD+ ECT+
Sbjct: 361 AERLGLQNLFWDWDLPRTREGFYRFRGSVMAAIVRGWAFAPHADLIWMETSSPDMVECTR 420
Query: 421 FAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADA 480
FA G+KS HPEIMLAYNLSPSFNWDASGMTDE M+DFIPRIAKLGFCWQFITLAGFHADA
Sbjct: 421 FAEGVKSMHPEIMLAYNLSPSFNWDASGMTDEHMRDFIPRIAKLGFCWQFITLAGFHADA 480
Query: 481 LVVDTFAKDYARRGMLAYVERIQREERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTA 540
LV DTFA+D+ARRGMLAYVE+IQREERNNGVDTLAHQKWSGAN+YD+YLKTVQGGISSTA
Sbjct: 481 LVTDTFARDFARRGMLAYVEKIQREERNNGVDTLAHQKWSGANFYDRYLKTVQGGISSTA 540
Query: 541 AMGKGVTEDQFKETWTRPGATNINN-GSTVVAKARM 575
AMGKGVTE+QFKETWTRPGA NI + G+ VVAKARM
Sbjct: 541 AMGKGVTEEQFKETWTRPGAGNIGSEGNLVVAKARM 576
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Involved in storage lipid mobilization during the growth of higher plant seedling. Gossypium hirsutum (taxid: 3635) EC: 4EC: .EC: 1EC: .EC: 3EC: .EC: 1 |
| >sp|P15479|ACEA_RICCO Isocitrate lyase OS=Ricinus communis PE=2 SV=1 | Back alignment and function description |
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| >sp|P93110|ACEA_CUCMA Isocitrate lyase OS=Cucurbita maxima PE=2 SV=1 | Back alignment and function description |
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| >sp|P49296|ACEA_CUCSA Isocitrate lyase OS=Cucumis sativus PE=3 SV=1 | Back alignment and function description |
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| >sp|P49297|ACEA_SOLLC Isocitrate lyase OS=Solanum lycopersicum PE=2 SV=1 | Back alignment and function description |
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| >sp|P25248|ACEA_BRANA Isocitrate lyase OS=Brassica napus PE=2 SV=1 | Back alignment and function description |
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| >sp|P28297|ACEA_ARATH Isocitrate lyase OS=Arabidopsis thaliana GN=ICL PE=1 SV=2 | Back alignment and function description |
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| >sp|P45457|ACEA2_SOYBN Isocitrate lyase 2 (Fragment) OS=Glycine max GN=ICL2 PE=2 SV=1 | Back alignment and function description |
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| >sp|P45456|ACEA1_SOYBN Isocitrate lyase 1 (Fragment) OS=Glycine max GN=ICL1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q43097|ACEA_PINTA Isocitrate lyase OS=Pinus taeda GN=ICL 8 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 575 | ||||||
| 113029 | 576 | RecName: Full=Isocitrate lyase; Short=IC | 1.0 | 0.998 | 0.897 | 0.0 | |
| 224095736 | 576 | predicted protein [Populus trichocarpa] | 1.0 | 0.998 | 0.897 | 0.0 | |
| 224132650 | 576 | predicted protein [Populus trichocarpa] | 1.0 | 0.998 | 0.899 | 0.0 | |
| 255577731 | 576 | isocitrate lyase, putative [Ricinus comm | 1.0 | 0.998 | 0.892 | 0.0 | |
| 113032 | 576 | RecName: Full=Isocitrate lyase; Short=IC | 1.0 | 0.998 | 0.890 | 0.0 | |
| 8134299 | 576 | RecName: Full=Isocitrate lyase; Short=IC | 1.0 | 0.998 | 0.883 | 0.0 | |
| 225447308 | 576 | PREDICTED: isocitrate lyase-like [Vitis | 1.0 | 0.998 | 0.878 | 0.0 | |
| 449490272 | 576 | PREDICTED: isocitrate lyase-like [Cucumi | 1.0 | 0.998 | 0.881 | 0.0 | |
| 449468341 | 576 | PREDICTED: isocitrate lyase-like [Cucumi | 1.0 | 0.998 | 0.880 | 0.0 | |
| 12005499 | 575 | isocitrate lyase [Ipomoea batatas] | 1.0 | 1.0 | 0.855 | 0.0 |
| >gi|113029|sp|P17069.1|ACEA_GOSHI RecName: Full=Isocitrate lyase; Short=ICL; Short=Isocitrase; Short=Isocitratase gi|18486|emb|CAA36381.1| unnamed protein product [Gossypium hirsutum] | Back alignment and taxonomy information |
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Score = 1101 bits (2847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/576 (89%), Positives = 551/576 (95%), Gaps = 1/576 (0%)
Query: 1 MAASYSVPSMILEEEGRFEAEVAEVQAWWNSERFRLTRRPYSARDVVALRGSLRQSYGSN 60
MAAS+SVPSMI+EEEGRFE EVAEVQAWWNSERF+LTRRPYSARDVVALRGSL+QSYGSN
Sbjct: 1 MAASFSVPSMIMEEEGRFETEVAEVQAWWNSERFKLTRRPYSARDVVALRGSLKQSYGSN 60
Query: 61 EMAKKLWRTLKTHQANGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSSTHTSTNEPGP 120
EMAKKLW TLKTHQANGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSSTHT+TNEPGP
Sbjct: 61 EMAKKLWTTLKTHQANGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSSTHTTTNEPGP 120
Query: 121 DLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGF 180
DLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTP VDYLKPIIADGDTGF
Sbjct: 121 DLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPYVDYLKPIIADGDTGF 180
Query: 181 GGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDV 240
GGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVA+SEHINRLVAARLQFDV
Sbjct: 181 GGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAVSEHINRLVAARLQFDV 240
Query: 241 MGVETVLVARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAE 300
MGVETVLVARTDA AATLIQTNVDTRDHQFILG TNPNLRGK+LA++LAE MAAGK G +
Sbjct: 241 MGVETVLVARTDAVAATLIQTNVDTRDHQFILGATNPNLRGKSLANMLAEGMAAGKNGPQ 300
Query: 301 LQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREI 360
LQAIEDNW+A+A LKTFSECV+DA+ ++N E EKRRR+NEWMN SSYDKCLS+EQ REI
Sbjct: 301 LQAIEDNWLAIAQLKTFSECVMDAIKSMNITEDEKRRRMNEWMNHSSYDKCLSNEQAREI 360
Query: 361 AERLGLKNLFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTK 420
AERLGL+NLFWDWDLPRTREGFYRF+GSV AAI+RGWAFAPHADLIWMET+SPD+ ECT+
Sbjct: 361 AERLGLQNLFWDWDLPRTREGFYRFRGSVMAAIVRGWAFAPHADLIWMETSSPDMVECTR 420
Query: 421 FAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADA 480
FA G+KS HPEIMLAYNLSPSFNWDASGMTDE M+DFIPRIAKLGFCWQFITLAGFHADA
Sbjct: 421 FAEGVKSMHPEIMLAYNLSPSFNWDASGMTDEHMRDFIPRIAKLGFCWQFITLAGFHADA 480
Query: 481 LVVDTFAKDYARRGMLAYVERIQREERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTA 540
LV DTFA+D+ARRGMLAYVE+IQREERNNGVDTLAHQKWSGAN+YD+YLKTVQGGISSTA
Sbjct: 481 LVTDTFARDFARRGMLAYVEKIQREERNNGVDTLAHQKWSGANFYDRYLKTVQGGISSTA 540
Query: 541 AMGKGVTEDQFKETWTRPGATNINN-GSTVVAKARM 575
AMGKGVTE+QFKETWTRPGA NI + G+ VVAKARM
Sbjct: 541 AMGKGVTEEQFKETWTRPGAGNIGSEGNLVVAKARM 576
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Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224095736|ref|XP_002310458.1| predicted protein [Populus trichocarpa] gi|222853361|gb|EEE90908.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224132650|ref|XP_002327847.1| predicted protein [Populus trichocarpa] gi|222837256|gb|EEE75635.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255577731|ref|XP_002529741.1| isocitrate lyase, putative [Ricinus communis] gi|223530782|gb|EEF32648.1| isocitrate lyase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|113032|sp|P15479.1|ACEA_RICCO RecName: Full=Isocitrate lyase; Short=ICL; Short=Isocitrase; Short=Isocitratase gi|169707|gb|AAA53378.1| isocitrate lyase [Ricinus communis] gi|225861|prf||1401247A isocitrate lyase | Back alignment and taxonomy information |
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| >gi|8134299|sp|P93110.1|ACEA_CUCMA RecName: Full=Isocitrate lyase; Short=ICL; Short=Isocitrase; Short=Isocitratase gi|1695645|dbj|BAA11320.1| Isocitrate Lyase [Cucurbita cv. Kurokawa Amakuri] | Back alignment and taxonomy information |
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| >gi|225447308|ref|XP_002280024.1| PREDICTED: isocitrate lyase-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449490272|ref|XP_004158557.1| PREDICTED: isocitrate lyase-like [Cucumis sativus] gi|1351840|sp|P49296.1|ACEA_CUCSA RecName: Full=Isocitrate lyase; Short=ICL; Short=Isocitrase; Short=Isocitratase gi|1052578|emb|CAA84632.1| isocitrate lyase [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449468341|ref|XP_004151880.1| PREDICTED: isocitrate lyase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|12005499|gb|AAG44479.1|AF243525_1 isocitrate lyase [Ipomoea batatas] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 575 | ||||||
| TAIR|locus:2093049 | 576 | ICL "isocitrate lyase" [Arabid | 1.0 | 0.998 | 0.753 | 2.5e-239 | |
| ASPGD|ASPL0000032974 | 538 | acuD [Emericella nidulans (tax | 0.899 | 0.960 | 0.535 | 3.9e-147 | |
| CGD|CAL0005762 | 550 | ICL1 [Candida albicans (taxid: | 0.906 | 0.947 | 0.511 | 4.2e-143 | |
| UNIPROTKB|Q59RB8 | 550 | ICL1 "Isocitrate lyase" [Candi | 0.906 | 0.947 | 0.511 | 4.2e-143 | |
| SGD|S000000867 | 557 | ICL1 "Isocitrate lyase" [Sacch | 0.907 | 0.937 | 0.488 | 2.7e-139 | |
| UNIPROTKB|G5EH03 | 607 | MGCH7_ch7g337 "Isocitrate lyas | 0.904 | 0.856 | 0.441 | 6.7e-120 | |
| ASPGD|ASPL0000074393 | 610 | mclA [Emericella nidulans (tax | 0.897 | 0.845 | 0.445 | 1.7e-114 | |
| SGD|S000006210 | 575 | ICL2 "2-methylisocitrate lyase | 0.895 | 0.895 | 0.402 | 2.3e-103 | |
| UNIPROTKB|Q9KTZ4 | 437 | VC_0736 "Isocitrate lyase" [Vi | 0.302 | 0.398 | 0.452 | 6.7e-73 | |
| TIGR_CMR|VC_0736 | 437 | VC_0736 "isocitrate lyase" [Vi | 0.302 | 0.398 | 0.452 | 6.7e-73 |
| TAIR|locus:2093049 ICL "isocitrate lyase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2307 (817.2 bits), Expect = 2.5e-239, P = 2.5e-239
Identities = 434/576 (75%), Positives = 479/576 (83%)
Query: 1 MAASYSVPSMILXXXXXXXXXXXXXQAWWNSERFRLTRRPYSARDVVALRGSLRQSYGSN 60
MAAS+SVPSMI+ Q WW+SERF+LTRRPY+ARDVVALRG L+Q Y SN
Sbjct: 1 MAASFSVPSMIMEEEGRFEAEVAEVQTWWSSERFKLTRRPYTARDVVALRGHLKQGYASN 60
Query: 61 EMAKKLWRTLKTHQANGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSSTHTSTNEPGP 120
EMAKKLWRTLK+HQANGTASRTFGALDPVQVTMMAKHLD+IYVSGWQCSSTHTSTNEPGP
Sbjct: 61 EMAKKLWRTLKSHQANGTASRTFGALDPVQVTMMAKHLDTIYVSGWQCSSTHTSTNEPGP 120
Query: 121 DLADYPYDTVPNKVEHLFFAQQYHDRKQXXXXXXXXXXXXXXTPCVDYLKPIIXXXXXXX 180
DLADYPYDTVPNKVEHLFFAQQYHDRKQ TP VDYLKPII
Sbjct: 121 DLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERTKTPFVDYLKPIIADGDTGF 180
Query: 181 XXXXXXVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDV 240
VKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVA+SEHINRLVAARLQFDV
Sbjct: 181 GGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAVSEHINRLVAARLQFDV 240
Query: 241 MGVETVLVARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKXXXXXXXXXXXXGKTGAE 300
MG ETVLVARTDA AATLIQ+N+D RDHQFILG TNP+LRGK GK G
Sbjct: 241 MGTETVLVARTDAVAATLIQSNIDARDHQFILGATNPSLRGKSLSSLLAEGMTVGKNGPA 300
Query: 301 LQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREI 360
LQ+IED W+ AGL TFSE V+ A+ +N E+EK +RL+EW+ + Y+ CLS+EQ R +
Sbjct: 301 LQSIEDQWLGSAGLMTFSEAVVQAIKRMNLNENEKNQRLSEWLTHARYENCLSNEQGRVL 360
Query: 361 AERLGLKNLFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTK 420
A +LG+ +LFWDWDLPRTREGFYRF+GSV AA++RGWAFA AD+IWMETASPDL ECT+
Sbjct: 361 AAKLGVTDLFWDWDLPRTREGFYRFQGSVAAAVVRGWAFAQIADIIWMETASPDLNECTQ 420
Query: 421 FAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADA 480
FA GIKSK PE+MLAYNLSPSFNWDASGMTD++M +FIPRIA+LG+CWQFITLAGFHADA
Sbjct: 421 FAEGIKSKTPEVMLAYNLSPSFNWDASGMTDQQMVEFIPRIARLGYCWQFITLAGFHADA 480
Query: 481 LVVDTFAKDYARRGMLAYVERIQREERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTA 540
LVVDTFAKDYARRGMLAYVERIQREER +GVDTLAHQKWSGANYYD+YLKTVQGGISSTA
Sbjct: 481 LVVDTFAKDYARRGMLAYVERIQREERTHGVDTLAHQKWSGANYYDRYLKTVQGGISSTA 540
Query: 541 AMGKGVTEDQFKETWTRPGATNINNG-STVVAKARM 575
AMGKGVTE+QFKE+WTRPGA + G S VVAK+RM
Sbjct: 541 AMGKGVTEEQFKESWTRPGADGMGEGTSLVVAKSRM 576
|
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| ASPGD|ASPL0000032974 acuD [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0005762 ICL1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q59RB8 ICL1 "Isocitrate lyase" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
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| SGD|S000000867 ICL1 "Isocitrate lyase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G5EH03 MGCH7_ch7g337 "Isocitrate lyase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000074393 mclA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| SGD|S000006210 ICL2 "2-methylisocitrate lyase of the mitochondrial matrix" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9KTZ4 VC_0736 "Isocitrate lyase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|VC_0736 VC_0736 "isocitrate lyase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9P8Q7 | ACEA_CANAX | 4, ., 1, ., 3, ., 1 | 0.5492 | 0.9408 | 0.9836 | N/A | no |
| Q9SE26 | ACEA_DENCR | 4, ., 1, ., 3, ., 1 | 0.7926 | 0.9947 | 0.9965 | N/A | no |
| Q9P6J1 | ACEB_SCHPO | 4, ., 1, ., 3, ., 3, 0 | 0.3412 | 0.8347 | 0.9266 | yes | no |
| Q8NJ72 | ACEA_KLULA | 4, ., 1, ., 3, ., 1 | 0.4937 | 0.9147 | 0.9704 | yes | no |
| A8NR45 | ACEA_COPC7 | 4, ., 1, ., 3, ., 1 | 0.5814 | 0.92 | 0.9832 | N/A | no |
| Q4HYR2 | ACEA_GIBZE | 4, ., 1, ., 3, ., 1 | 0.5435 | 0.9234 | 0.9725 | yes | no |
| P15479 | ACEA_RICCO | 4, ., 1, ., 3, ., 1 | 0.8906 | 1.0 | 0.9982 | N/A | no |
| P25248 | ACEA_BRANA | 4, ., 1, ., 3, ., 1 | 0.8402 | 1.0 | 0.9982 | N/A | no |
| P20014 | ACEA_CANTR | 4, ., 1, ., 3, ., 1 | 0.5486 | 0.9356 | 0.9781 | N/A | no |
| P17069 | ACEA_GOSHI | 4, ., 1, ., 3, ., 1 | 0.8975 | 1.0 | 0.9982 | N/A | no |
| Q6T267 | ACEA_ASPFU | 4, ., 1, ., 3, ., 1 | 0.5526 | 0.9234 | 0.9869 | yes | no |
| Q9C124 | ACEA_PICPA | 4, ., 1, ., 3, ., 1 | 0.5055 | 0.9339 | 0.9763 | yes | no |
| O13439 | ACEA_COPCI | 4, ., 1, ., 3, ., 1 | 0.5759 | 0.9182 | 0.9832 | N/A | no |
| P45456 | ACEA1_SOYBN | 4, ., 1, ., 3, ., 1 | 0.8136 | 0.9686 | 0.9982 | yes | no |
| Q9HFN2 | ACEA_CYBJA | 4, ., 1, ., 3, ., 1 | 0.5429 | 0.9391 | 0.9818 | N/A | no |
| Q96WZ5 | ACEA_PENMA | 4, ., 1, ., 3, ., 1 | 0.5473 | 0.9234 | 0.9833 | N/A | no |
| O94198 | ACEA_ASHGO | 4, ., 1, ., 3, ., 1 | 0.5102 | 0.92 | 0.9446 | yes | no |
| Q8J232 | ACEA_MAGO7 | 4, ., 1, ., 3, ., 1 | 0.5569 | 0.9286 | 0.9762 | N/A | no |
| Q6BRY4 | ACEA_DEBHA | 4, ., 1, ., 3, ., 1 | 0.5582 | 0.9321 | 0.9745 | yes | no |
| P93110 | ACEA_CUCMA | 4, ., 1, ., 3, ., 1 | 0.8836 | 1.0 | 0.9982 | N/A | no |
| P45457 | ACEA2_SOYBN | 4, ., 1, ., 3, ., 1 | 0.8150 | 0.9686 | 1.0 | yes | no |
| P49296 | ACEA_CUCSA | 4, ., 1, ., 3, ., 1 | 0.8819 | 1.0 | 0.9982 | N/A | no |
| P49297 | ACEA_SOLLC | 4, ., 1, ., 3, ., 1 | 0.8521 | 1.0 | 1.0 | N/A | no |
| Q43097 | ACEA_PINTA | 4, ., 1, ., 3, ., 1 | 0.7864 | 0.9947 | 0.9862 | N/A | no |
| Q96TP5 | ACEA_COCIM | 4, ., 1, ., 3, ., 1 | 0.5535 | 0.9286 | 0.9925 | N/A | no |
| P28297 | ACEA_ARATH | 4, ., 1, ., 3, ., 1 | 0.8298 | 1.0 | 0.9982 | yes | no |
| Q6FPK7 | ACEA_CANGA | 4, ., 1, ., 3, ., 1 | 0.5258 | 0.9252 | 0.9620 | yes | no |
| P28299 | ACEA_NEUCR | 4, ., 1, ., 3, ., 1 | 0.5557 | 0.9252 | 0.9708 | N/A | no |
| P28298 | ACEA_EMENI | 4, ., 1, ., 3, ., 1 | 0.5643 | 0.9321 | 0.9962 | yes | no |
| Q86ZF1 | ACEA_LEPMC | 4, ., 1, ., 3, ., 1 | 0.5648 | 0.9217 | 0.9869 | N/A | no |
| P41555 | ACEA_YARLI | 4, ., 1, ., 3, ., 1 | 0.5349 | 0.9286 | 0.9888 | yes | no |
| P28240 | ACEA_YEAST | 4, ., 1, ., 3, ., 1 | 0.5110 | 0.9286 | 0.9587 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.1.3.1 | 0.994 |
| 3rd Layer | 4.1.3 | 0.998 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
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 |
 |
 |
|||
 | eugene3.00070229 | isocitrate lyase (EC-4.1.3.1) (576 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | fgenesh4_pg.C_LG_XV000664 | • | • | • | • | • | • | • | 0.992 | ||
 | gw1.III.1066.1 | • | • | 0.901 | |||||||
 | estExt_fgenesh4_pm.C_LG_III0134 | • | • | 0.901 | |||||||
 | gw1.III.1067.1 | • | • | 0.901 | |||||||
 | eugene3.01460031 | • | • | 0.901 | |||||||
 | estExt_fgenesh4_pg.C_LG_XI0914 | • | • | 0.901 | |||||||
 | gw1.XIV.3318.1 | • | • | 0.900 | |||||||
 | estExt_fgenesh4_pg.C_LG_II2062 | • | 0.900 | ||||||||
 | eugene3.01810009 | • | 0.900 | ||||||||
 | eugene3.00570034 | • | 0.900 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 575 | |||
| PLN02892 | 570 | PLN02892, PLN02892, isocitrate lyase | 0.0 | |
| pfam00463 | 526 | pfam00463, ICL, Isocitrate lyase family | 0.0 | |
| TIGR01346 | 527 | TIGR01346, isocit_lyase, isocitrate lyase | 0.0 | |
| COG2224 | 433 | COG2224, AceA, Isocitrate lyase [Energy production | 1e-107 | |
| COG2224 | 433 | COG2224, AceA, Isocitrate lyase [Energy production | 7e-73 | |
| PRK15063 | 428 | PRK15063, PRK15063, isocitrate lyase; Provisional | 1e-65 | |
| PRK15063 | 428 | PRK15063, PRK15063, isocitrate lyase; Provisional | 5e-60 | |
| cd00377 | 243 | cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme | 3e-41 | |
| cd06556 | 240 | cd06556, ICL_KPHMT, Members of the ICL/PEPM_KPHMT | 3e-27 | |
| PRK06498 | 531 | PRK06498, PRK06498, isocitrate lyase; Provisional | 2e-18 | |
| PRK06498 | 531 | PRK06498, PRK06498, isocitrate lyase; Provisional | 3e-18 | |
| COG2513 | 289 | COG2513, PrpB, PEP phosphonomutase and related enz | 1e-15 | |
| TIGR02317 | 285 | TIGR02317, prpB, methylisocitrate lyase | 2e-14 | |
| cd00377 | 243 | cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme | 1e-12 | |
| PRK11320 | 292 | PRK11320, prpB, 2-methylisocitrate lyase; Provisio | 2e-12 | |
| cd06556 | 240 | cd06556, ICL_KPHMT, Members of the ICL/PEPM_KPHMT | 2e-09 | |
| pfam13714 | 238 | pfam13714, PEP_mutase, Phosphoenolpyruvate phospho | 4e-09 | |
| TIGR02319 | 294 | TIGR02319, CPEP_Pphonmut, carboxyvinyl-carboxyphos | 7e-07 |
| >gnl|CDD|215482 PLN02892, PLN02892, isocitrate lyase | Back alignment and domain information |
|---|
Score = 1151 bits (2978), Expect = 0.0
Identities = 489/575 (85%), Positives = 527/575 (91%), Gaps = 5/575 (0%)
Query: 1 MAASYSVPSMILEEEGRFEAEVAEVQAWWNSERFRLTRRPYSARDVVALRGSLRQSYGSN 60
MAAS+SVPSMI+EEEGRFEAEVAEV+AWW SERF+LTRRPYSARDV ALRG+L+QSY SN
Sbjct: 1 MAASFSVPSMIMEEEGRFEAEVAEVEAWWRSERFKLTRRPYSARDVAALRGTLKQSYASN 60
Query: 61 EMAKKLWRTLKTHQANGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSSTHTSTNEPGP 120
EMAKKLWRTLKTHQANGTASRTFGALDPVQV MAKHLD+IYVSGWQCSST TSTNEPGP
Sbjct: 61 EMAKKLWRTLKTHQANGTASRTFGALDPVQVAQMAKHLDTIYVSGWQCSSTATSTNEPGP 120
Query: 121 DLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGF 180
DLADYP DTVPNKVEHLFFAQ YHDRKQREARMSMSREERARTP VDYLKPIIADGDTGF
Sbjct: 121 DLADYPMDTVPNKVEHLFFAQLYHDRKQREARMSMSREERARTPYVDYLKPIIADGDTGF 180
Query: 181 GGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDV 240
GGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHM GKVLVA SEHINRLVAARLQFDV
Sbjct: 181 GGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMGGKVLVATSEHINRLVAARLQFDV 240
Query: 241 MGVETVLVARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAE 300
MGVETVLVARTDA AATLIQ+N+D RDHQFILG TNP LRGK LA++LAEAMAAGK+GAE
Sbjct: 241 MGVETVLVARTDAVAATLIQSNIDARDHQFILGATNPALRGKPLATLLAEAMAAGKSGAE 300
Query: 301 LQAIEDNWIAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREI 360
LQAIED W+A A L TFSE V DA+ ++N E+EKRRRLNEWM KCLS+EQ R I
Sbjct: 301 LQAIEDEWLAQAQLMTFSEAVADAIKSMNISENEKRRRLNEWMASVP--KCLSNEQARRI 358
Query: 361 AERLGLKNLFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTK 420
A +LG+ N+FWDWDLPRTREGFYRF+GSV A I+RG AFAP+ADLIWMETASPDLAE TK
Sbjct: 359 AAKLGVANVFWDWDLPRTREGFYRFRGSVKACIVRGRAFAPYADLIWMETASPDLAEATK 418
Query: 421 FAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADA 480
FA G+K+KHPEIMLAYNLSPSFNWDASGMTDE+M +FIPR+A+LG+CWQFITLAGFHA+A
Sbjct: 419 FAEGVKAKHPEIMLAYNLSPSFNWDASGMTDEQMAEFIPRLARLGYCWQFITLAGFHANA 478
Query: 481 LVVDTFAKDYARRGMLAYVERIQREERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTA 540
LVVDTFA+DYARRGMLAYVERIQR+ER NGV+TLAHQKWSGANYYD+YLKTVQGGISSTA
Sbjct: 479 LVVDTFARDYARRGMLAYVERIQRQERTNGVETLAHQKWSGANYYDRYLKTVQGGISSTA 538
Query: 541 AMGKGVTEDQFKETWTRPGATNINNGSTVVAKARM 575
AMGKGVTE+QFKETWTRPGA GS VVAK+RM
Sbjct: 539 AMGKGVTEEQFKETWTRPGAE---GGSEVVAKSRM 570
|
Length = 570 |
| >gnl|CDD|201244 pfam00463, ICL, Isocitrate lyase family | Back alignment and domain information |
|---|
| >gnl|CDD|233364 TIGR01346, isocit_lyase, isocitrate lyase | Back alignment and domain information |
|---|
| >gnl|CDD|225134 COG2224, AceA, Isocitrate lyase [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|225134 COG2224, AceA, Isocitrate lyase [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|237893 PRK15063, PRK15063, isocitrate lyase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237893 PRK15063, PRK15063, isocitrate lyase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|119340 cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
| >gnl|CDD|119341 cd06556, ICL_KPHMT, Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
| >gnl|CDD|180592 PRK06498, PRK06498, isocitrate lyase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|180592 PRK06498, PRK06498, isocitrate lyase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225311 COG2513, PrpB, PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|131370 TIGR02317, prpB, methylisocitrate lyase | Back alignment and domain information |
|---|
| >gnl|CDD|119340 cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
| >gnl|CDD|183086 PRK11320, prpB, 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|119341 cd06556, ICL_KPHMT, Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
| >gnl|CDD|222337 pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
| >gnl|CDD|131372 TIGR02319, CPEP_Pphonmut, carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 575 | |||
| PLN02892 | 570 | isocitrate lyase | 100.0 | |
| PF00463 | 526 | ICL: Isocitrate lyase family; InterPro: IPR000918 | 100.0 | |
| TIGR01346 | 527 | isocit_lyase isocitrate lyase. Isocitrate lyase an | 100.0 | |
| COG2224 | 433 | AceA Isocitrate lyase [Energy production and conve | 100.0 | |
| PRK15063 | 428 | isocitrate lyase; Provisional | 100.0 | |
| KOG1260 | 492 | consensus Isocitrate lyase [Energy production and | 100.0 | |
| PRK06498 | 531 | isocitrate lyase; Provisional | 100.0 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 100.0 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 100.0 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 100.0 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 100.0 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 100.0 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 100.0 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 100.0 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 100.0 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 100.0 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 99.83 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 99.8 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 99.49 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 99.25 | |
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 95.9 | |
| COG0413 | 268 | PanB Ketopantoate hydroxymethyltransferase [Coenzy | 94.3 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 93.76 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 91.73 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 91.56 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 91.16 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 90.29 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 89.54 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 88.41 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 86.14 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 85.27 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 85.22 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 85.07 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 84.43 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 83.56 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 83.36 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 81.22 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 81.11 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 80.06 |
| >PLN02892 isocitrate lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-184 Score=1471.23 Aligned_cols=569 Identities=86% Similarity=1.325 Sum_probs=542.0
Q ss_pred CCCCCCCcchhHHhhhHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHhhCCccccCCchHHHHHHHHHHHhhhhCCCcee
Q 042063 2 AASYSVPSMILEEEGRFEAEVAEVQAWWNSERFRLTRRPYSARDVVALRGSLRQSYGSNEMAKKLWRTLKTHQANGTASR 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~i~~ww~~~R~~~i~R~Yta~~v~~~rgs~~~~y~~~~~A~kL~~lL~~~~~~~~~l~ 81 (575)
++..+.++....|+..|+++|++|++||++|||++|+|||||+||++||||++++|||+.+|+|||++|+++++++++++
T Consensus 2 ~~~~~~~~~~~~e~~~~~~~v~~ie~~w~~pR~~~ikRpYta~dV~~lRGs~~~~y~s~~~A~kLw~lL~~~~~~~~~~~ 81 (570)
T PLN02892 2 AASFSVPSMIMEEEGRFEAEVAEVEAWWRSERFKLTRRPYSARDVAALRGTLKQSYASNEMAKKLWRTLKTHQANGTASR 81 (570)
T ss_pred CcccCCccccchHHHHHHHHHHHHHHhhcChhhcCCcCCCCHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHhhccCCcee
Confidence 34444444456689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHccCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhh
Q 042063 82 TFGALDPVQVTMMAKHLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERA 161 (575)
Q Consensus 82 ~~Ga~D~~sA~~~a~gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~ 161 (575)
++||+||+||+||++|+++||+|||+||++++++++++||+++||+++||++|+||++||+||||||+++|+++++++|+
T Consensus 82 t~Galdp~Q~~Qm~k~l~~iYvSGWq~ss~a~t~~e~~PD~adYP~~tVP~~V~ri~~Aq~~hDr~q~~~r~~~~~~~r~ 161 (570)
T PLN02892 82 TFGALDPVQVAQMAKHLDTIYVSGWQCSSTATSTNEPGPDLADYPMDTVPNKVEHLFFAQLYHDRKQREARMSMSREERA 161 (570)
T ss_pred eccCCcHHHHHHHHccCceEEechhhhcCccccCCCCCCCcccCccccccHHHHHHHHHHHHHHHHHHHHHhccCHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhc
Q 042063 162 RTPCVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVM 241 (575)
Q Consensus 162 ~~~~vd~~lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~ 241 (575)
.++.+||++|||||+|+|||++++++++||+||++||+|||||||.+++|||||++||+|+|++||++||+|||.++|++
T Consensus 162 ~~~~~Dyl~PIiADaEtGyG~~~~~~~~vk~~ieaGAaGIhIEDQ~~~~KkCGh~~gk~Lvp~~e~v~RI~AAR~aad~~ 241 (570)
T PLN02892 162 RTPYVDYLKPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMGGKVLVATSEHINRLVAARLQFDVM 241 (570)
T ss_pred CCCccccccceeeecCCCCCccHHHHHHHHHHHHcCCeEEEEECCCCcccccCCCCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CCceEEEEeecccccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCcccccHHH
Q 042063 242 GVETVLVARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMAGLKTFSECV 321 (575)
Q Consensus 242 g~d~vIiARTDA~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~~l~tf~ea~ 321 (575)
|+|||||||||++++++|+++||+|||+||.|+|||.++..|++|.+..+++.|+++++|..++++|.++++|+||+|+|
T Consensus 242 G~d~vI~ARTDA~~a~Lits~iD~RDh~FI~Gat~~~~~~~~l~~~~~~a~~~g~~g~~l~~~e~~W~~~a~l~tf~eav 321 (570)
T PLN02892 242 GVETVLVARTDAVAATLIQSNIDARDHQFILGATNPALRGKPLATLLAEAMAAGKSGAELQAIEDEWLAQAQLMTFSEAV 321 (570)
T ss_pred CCCeEEEEecCchhcccchhhhccccccceeeecCCccccCCHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCccHHHHH
Confidence 99999999999999999999999999999999999999434999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCchhhHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCccccccCcHHHHHHHhhhcCC
Q 042063 322 IDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAP 401 (575)
Q Consensus 322 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~gg~~~ai~R~~a~ap 401 (575)
.++++.+..+...+...+.+|..... .++||++||++|+++.|.+|+||||+|||+|||||||||+++||+|+++|||
T Consensus 322 ~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~s~~e~r~lA~~~~~~~v~fdwd~~Rt~EG~Y~~k~G~~~aI~R~~A~AP 399 (570)
T PLN02892 322 ADAIKSMNISENEKRRRLNEWMASVP--KCLSNEQARRIAAKLGVANVFWDWDLPRTREGFYRFRGSVKACIVRGRAFAP 399 (570)
T ss_pred HHHHHhcccccchhHHHHHHHHhhcc--ccCCHHHHHHHHHHhCCCCCcccCCCCcCcccceeeCCChHHHHHHHHhccc
Confidence 99997543344456667788888754 5899999999999999999999999999999999999999999999999999
Q ss_pred cCcEEeeccCCCCHHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcCceeeeecchhhhhhhh
Q 042063 402 HADLIWMETASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADAL 481 (575)
Q Consensus 402 yaDl~W~Et~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG~H~~~~ 481 (575)
|||||||||++|||+||++||++||++||++||||||||||||+++||+|++|++||+|||+||||||||||||||++|+
T Consensus 400 yaDliW~ET~~Pdl~~A~~Fa~~V~~~~P~k~LaYNlSPSFNW~~~g~~d~~i~~F~~dLaklGy~~QfITLaG~H~~~~ 479 (570)
T PLN02892 400 YADLIWMETASPDLAEATKFAEGVKAKHPEIMLAYNLSPSFNWDASGMTDEQMAEFIPRLARLGYCWQFITLAGFHANAL 479 (570)
T ss_pred ccCEEEecCCCCCHHHHHHHHHHHHHhCCCCeeeecCCCCcCCCCCCCCHHHHHHHHHHHHhcCceEEEEchHhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCccccccccCchhHHHHHHHhcCCcchhhcCCCCchhhhhhhhhcCCCCc
Q 042063 482 VVDTFAKDYARRGMLAYVERIQREERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVTEDQFKETWTRPGAT 561 (575)
Q Consensus 482 ~~~~la~~~~~~GM~aYv~~vQ~~E~~~g~d~~~HQkwsGa~y~D~~~~~v~~g~sst~a~g~~~te~qf~~~~~~~~~~ 561 (575)
+|++||++|+++||+|||+.|||+|++.|||+++||||||++|+|.++++|+||+|||+|||+|+||+||+.++...+..
T Consensus 480 ~~~~lA~~~~~~GM~AYve~vQ~~E~~~g~~~~~HQ~wsGa~y~D~~~~~v~gG~sst~Am~~~~te~QF~~~~~~~~~~ 559 (570)
T PLN02892 480 VVDTFARDYARRGMLAYVERIQRQERTNGVETLAHQKWSGANYYDRYLKTVQGGISSTAAMGKGVTEEQFKETWTRPGAE 559 (570)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCeeeccccccccHHHHHHHHhcCchhhhhhccCCCcHHHHhhhhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777655553
Q ss_pred ccCCCceeeeeccC
Q 042063 562 NINNGSTVVAKARM 575 (575)
Q Consensus 562 ~~~~~~~~~~~~~~ 575 (575)
+++.|+++.||
T Consensus 560 ---~~~~~~~~~~~ 570 (570)
T PLN02892 560 ---GGSEVVAKSRM 570 (570)
T ss_pred ---ccceeeecccC
Confidence 67888888876
|
|
| >PF00463 ICL: Isocitrate lyase family; InterPro: IPR000918 Isocitrate lyase (4 | Back alignment and domain information |
|---|
| >TIGR01346 isocit_lyase isocitrate lyase | Back alignment and domain information |
|---|
| >COG2224 AceA Isocitrate lyase [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK15063 isocitrate lyase; Provisional | Back alignment and domain information |
|---|
| >KOG1260 consensus Isocitrate lyase [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK06498 isocitrate lyase; Provisional | Back alignment and domain information |
|---|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
| >COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 575 | ||||
| 1dqu_A | 538 | Crystal Structure Of The Isocitrate Lyase From Aspe | 1e-162 | ||
| 3lg3_A | 435 | 1.4a Crystal Structure Of Isocitrate Lyase From Yer | 3e-38 | ||
| 3lg3_A | 435 | 1.4a Crystal Structure Of Isocitrate Lyase From Yer | 7e-34 | ||
| 1igw_A | 434 | Crystal Structure Of The Isocitrate Lyase From The | 2e-37 | ||
| 1igw_A | 434 | Crystal Structure Of The Isocitrate Lyase From The | 2e-34 | ||
| 3i4e_A | 439 | Crystal Structure Of Isocitrate Lyase From Burkhold | 2e-35 | ||
| 3i4e_A | 439 | Crystal Structure Of Isocitrate Lyase From Burkhold | 2e-31 | ||
| 1f8i_A | 429 | Crystal Structure Of Isocitrate Lyase:nitropropiona | 4e-35 | ||
| 1f61_A | 429 | Crystal Structure Of Isocitrate Lyase From Mycobact | 5e-35 | ||
| 3eol_A | 433 | 2.0a Crystal Structure Of Isocitrate Lyase From Bru | 3e-34 | ||
| 3e5b_A | 433 | 2.4 A Crystal Structure Of Isocitrate Lyase From Br | 4e-34 | ||
| 3fa3_A | 302 | Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pe | 1e-06 | ||
| 3lye_A | 307 | Crystal Structure Of Oxaloacetate Acetylhydrolase L | 2e-06 | ||
| 1zlp_A | 318 | Petal Death Protein Psr132 With Cysteine-Linked Glu | 2e-05 | ||
| 1mum_A | 295 | Structure Of The 2-Methylisocitrate Lyase (Prpb) Fr | 2e-04 |
| >pdb|1DQU|A Chain A, Crystal Structure Of The Isocitrate Lyase From Aspergillus Nidulans Length = 538 | Back alignment and structure |
|
| >pdb|3LG3|A Chain A, 1.4a Crystal Structure Of Isocitrate Lyase From Yersinia Pestis Co92 Length = 435 | Back alignment and structure |
| >pdb|3LG3|A Chain A, 1.4a Crystal Structure Of Isocitrate Lyase From Yersinia Pestis Co92 Length = 435 | Back alignment and structure |
| >pdb|1IGW|A Chain A, Crystal Structure Of The Isocitrate Lyase From The A219c Mutant Of Escherichia Coli Length = 434 | Back alignment and structure |
| >pdb|1IGW|A Chain A, Crystal Structure Of The Isocitrate Lyase From The A219c Mutant Of Escherichia Coli Length = 434 | Back alignment and structure |
| >pdb|3I4E|A Chain A, Crystal Structure Of Isocitrate Lyase From Burkholderia Pseudomallei Length = 439 | Back alignment and structure |
| >pdb|3I4E|A Chain A, Crystal Structure Of Isocitrate Lyase From Burkholderia Pseudomallei Length = 439 | Back alignment and structure |
| >pdb|1F8I|A Chain A, Crystal Structure Of Isocitrate Lyase:nitropropionate:glyoxylate Complex From Mycobacterium Tuberculosis Length = 429 | Back alignment and structure |
| >pdb|1F61|A Chain A, Crystal Structure Of Isocitrate Lyase From Mycobacterium Tuberculosis Length = 429 | Back alignment and structure |
| >pdb|3EOL|A Chain A, 2.0a Crystal Structure Of Isocitrate Lyase From Brucella Melitensis (P43212) Length = 433 | Back alignment and structure |
| >pdb|3E5B|A Chain A, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella Melitensis Length = 433 | Back alignment and structure |
| >pdb|3FA3|A Chain A, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep MutaseISOCITRATE Lyase Superfamily Member, Trigonal Crystal Form Length = 302 | Back alignment and structure |
| >pdb|3LYE|A Chain A, Crystal Structure Of Oxaloacetate Acetylhydrolase Length = 307 | Back alignment and structure |
| >pdb|1ZLP|A Chain A, Petal Death Protein Psr132 With Cysteine-Linked Glutaraldehyde Forming A Thiohemiacetal Adduct Length = 318 | Back alignment and structure |
| >pdb|1MUM|A Chain A, Structure Of The 2-Methylisocitrate Lyase (Prpb) From Escherichia Coli Length = 295 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} SCOP: c.1.12.7 Length = 538 | Back alignment and structure |
|---|
Score = 561 bits (1447), Expect = 0.0
Identities = 303/544 (55%), Positives = 384/544 (70%), Gaps = 8/544 (1%)
Query: 9 SMILEEEGRFEAEVAEVQAWWNSERFRLTRRPYSARDVVALRGSLRQSYGSNEMAKKLWR 68
S I EE+ R+ EVA V+ WW R+R T+RP++A +VA RG+L+ Y SN AKKLW
Sbjct: 2 SYIEEEDQRYWDEVAAVKNWWKDSRWRYTKRPFTAEQIVAKRGNLKIEYPSNVQAKKLWG 61
Query: 69 TLKTHQANGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSSTHTSTNEPGPDLADYPYD 128
L+ + N AS T+G LDP VT MAK+LD++YVSGWQ SST +ST+EP PDLADYP +
Sbjct: 62 ILERNFKNKEASFTYGCLDPTMVTQMAKYLDTVYVSGWQSSSTASSTDEPSPDLADYPMN 121
Query: 129 TVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVK 188
TVPNKV HL+ AQ +HDRKQRE RM+ +++R + VDYL+PIIAD DTG GG TA +K
Sbjct: 122 TVPNKVNHLWMAQLFHDRKQREERMTTPKDQRHKVANVDYLRPIIADADTGHGGLTAVMK 181
Query: 189 LCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLV 248
L KLFVERGAAG+HIEDQ+ TKKCGHMAGKVLV ISEHINRLVA R Q D+MG + + +
Sbjct: 182 LTKLFVERGAAGIHIEDQAPGTKKCGHMAGKVLVPISEHINRLVAIRAQADIMGTDLLAI 241
Query: 249 ARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNW 308
ARTD+EAATLI + +D RDH FI+G TNP+++ L ++ A AGK GAELQAIED W
Sbjct: 242 ARTDSEAATLITSTIDHRDHPFIIGSTNPDIQP--LNDLMVMAEQAGKNGAELQAIEDEW 299
Query: 309 IAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKN 368
+A AGLK F++ V+DA+ + + K S+ + R IA+ + +
Sbjct: 300 LAKAGLKLFNDAVVDAI-----NNSPLPNKKAAIEKYLTQSKGKSNLEARAIAKEIAGTD 354
Query: 369 LFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSK 428
+++DW+ PRTREG+YR++G AI R A+AP ADLIWME+ PD + +FA G+ +
Sbjct: 355 IYFDWEAPRTREGYYRYQGGTQCAINRAVAYAPFADLIWMESKLPDYKQAKEFADGVHAV 414
Query: 429 HPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAK 488
PE LAYNLSPSFNW + M +E + +I R+ LG+ WQFITLAG H AL+ DTFAK
Sbjct: 415 WPEQKLAYNLSPSFNWKKA-MPRDEQETYIKRLGALGYAWQFITLAGLHTTALISDTFAK 473
Query: 489 DYARRGMLAYVERIQREERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVTE 548
YA++GM AY E +Q E NGVD + HQKWSGANY D LK + GG+SSTAAMGKGVTE
Sbjct: 474 AYAKQGMRAYGELVQEPEMANGVDVVTHQKWSGANYVDNMLKMITGGVSSTAAMGKGVTE 533
Query: 549 DQFK 552
DQFK
Sbjct: 534 DQFK 537
|
| >3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} PDB: 1igw_A Length = 435 | Back alignment and structure |
|---|
| >3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} PDB: 1igw_A Length = 435 | Back alignment and structure |
|---|
| >1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A Length = 429 | Back alignment and structure |
|---|
| >1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A Length = 429 | Back alignment and structure |
|---|
| >3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} Length = 439 | Back alignment and structure |
|---|
| >3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} Length = 439 | Back alignment and structure |
|---|
| >3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* Length = 433 | Back alignment and structure |
|---|
| >3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* Length = 433 | Back alignment and structure |
|---|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A Length = 302 | Back alignment and structure |
|---|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A Length = 307 | Back alignment and structure |
|---|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} Length = 298 | Back alignment and structure |
|---|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} Length = 318 | Back alignment and structure |
|---|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A Length = 295 | Back alignment and structure |
|---|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A Length = 295 | Back alignment and structure |
|---|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} Length = 287 | Back alignment and structure |
|---|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A Length = 290 | Back alignment and structure |
|---|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} Length = 255 | Back alignment and structure |
|---|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} Length = 275 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 575 | |||
| 1dqu_A | 538 | Isocitrate lyase; beta barrel; 2.80A {Emericella n | 100.0 | |
| 3lg3_A | 435 | Isocitrate lyase; conserved, CD, proteomics eviden | 100.0 | |
| 3i4e_A | 439 | Isocitrate lyase; structural genomics, seattle str | 100.0 | |
| 3eol_A | 433 | Isocitrate lyase; seattle structural center for in | 100.0 | |
| 1f8m_A | 429 | Isocitrate lyase, ICL; alpha-beta barrel, helix-sw | 100.0 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 100.0 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 100.0 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 100.0 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 100.0 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 100.0 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 100.0 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 100.0 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 100.0 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 100.0 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 100.0 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 100.0 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 99.87 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 99.81 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 99.78 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 99.77 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 90.81 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 88.69 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 87.83 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 86.35 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 84.83 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 83.36 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 81.26 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 80.21 |
| >1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-172 Score=1390.05 Aligned_cols=535 Identities=57% Similarity=0.950 Sum_probs=495.1
Q ss_pred hhHHhhhHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHhhCCccccCCchHHHHHHHHHHHhhhhCCCceeecCCCCHHH
Q 042063 11 ILEEEGRFEAEVAEVQAWWNSERFRLTRRPYSARDVVALRGSLRQSYGSNEMAKKLWRTLKTHQANGTASRTFGALDPVQ 90 (575)
Q Consensus 11 ~~~~~~~~~~~~~~i~~ww~~~R~~~i~R~Yta~~v~~~rgs~~~~y~~~~~A~kL~~lL~~~~~~~~~l~~~Ga~D~~s 90 (575)
++.|+..|+++|++|++||++|||++|+||||++||+++|||+|++||++.+|+|||++|+++|++++|+++||||||+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~w~~~R~~~i~rpYta~~v~~~rGs~~~~~~~~~~a~kL~~~lr~l~~~~~~l~~pga~D~~s 83 (538)
T 1dqu_A 4 IEEEDQRYWDEVAAVKNWWKDSRWRYTKRPFTAEQIVAKRGNLKIEYPSNVQAKKLWGILERNFKNKEASFTYGCLDPTM 83 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSGGGGGCCCSSCHHHHHHHCCSSCCCCTHHHHHHHHHHHHHHHHHHTCCEEEEBCCSHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCccccCccCCCCHHHHHHHcCCCCCccchhHHHHHHHHHHHHhhccCCcEEecCCCCHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcCCCCCCCC
Q 042063 91 VTMMAKHLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLK 170 (575)
Q Consensus 91 A~~~a~gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~l 170 (575)
|+++++||++||+|||+||++++++++|+||+++||+++|++.|++|+++|++|||||+++|++++++++++.+.+||++
T Consensus 84 A~~~~~gf~Aiy~SG~~vAas~~~~~~G~PD~~~~~~~ev~~~v~~I~~a~~~~D~~q~~~r~~~~~~~~~~~~~~d~~l 163 (538)
T 1dqu_A 84 VTQMAKYLDTVYVSGWQSSSTASSTDEPSPDLADYPMNTVPNKVNHLWMAQLFHDRKQREERMTTPKDQRHKVANVDYLR 163 (538)
T ss_dssp HHHHHHHCSCEEECHHHHHHHCCTTCCCCSSCSCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHTTSCCCCCCC
T ss_pred HHHHHhcCCeeecccHHHHhhcccccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhccccccCcCC
Confidence 99988899999999999998877778999999999999999999999999999999999999999999988887789999
Q ss_pred ceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEEe
Q 042063 171 PIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVAR 250 (575)
Q Consensus 171 PIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiAR 250 (575)
|||||+|+|||+++||+++||.|+++||+|||||||+.+||||||++||+|||++||++||+|||.++|.+|+|||||||
T Consensus 164 PIiaD~DtGfG~~~nv~~tvk~~ieAGaAGihIEDQ~~~~KkCGH~~GK~Lvp~ee~v~rI~AAr~A~d~~g~d~vIiAR 243 (538)
T 1dqu_A 164 PIIADADTGHGGLTAVMKLTKLFVERGAAGIHIEDQAPGTKKCGHMAGKVLVPISEHINRLVAIRAQADIMGTDLLAIAR 243 (538)
T ss_dssp CEEEECTTCSSSHHHHHHHHHHHHHTTCSEEEECSBCTTCC------CEEECCHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEecCCcCCchHHHHHHHHHHHHcCCeEEEeeccCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99999999999999999999999999999999999997799999999999999999999999999999999999999999
Q ss_pred ecccccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCcccccHHHHHHHhccCC
Q 042063 251 TDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMAGLKTFSECVIDAVNNLNT 330 (575)
Q Consensus 251 TDA~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~~l~tf~ea~~~~l~~~~~ 330 (575)
||++.+.+|+++|++|+++|+.|+|||.+. ||||++..+.++|++++||.+|+++|..++||++|||++.++|.++
T Consensus 244 TDA~~~~~l~~aI~~R~~ay~~G~~~~~~~--AGAD~~~~~~~~G~~~~ei~~~~~~~~~~~nl~~~~e~~~~~l~~~-- 319 (538)
T 1dqu_A 244 TDSEAATLITSTIDHRDHPFIIGSTNPDIQ--PLNDLMVMAEQAGKNGAELQAIEDEWLAKAGLKLFNDAVVDAINNS-- 319 (538)
T ss_dssp CCGGGEEEESCTTCGGGGGGEEEECCTTSC--CHHHHHHHHHHSCCCSHHHHHHHHHHHHHSCEECSHHHHHHHHHTS--
T ss_pred eccccccCHHHHHHHHHHHHHhcCCCCCCc--cchHHHHHHHhcCCCHHHHHHHHHHhcCCCceEecchHHHHHHHhc--
Confidence 999999999999999999999999999887 9999977666789999999999999999999999999999999774
Q ss_pred CchhhHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCccccccCcHHHHHHHhhhcCCcCcEEeecc
Q 042063 331 GEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMET 410 (575)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~gg~~~ai~R~~a~apyaDl~W~Et 410 (575)
+.+++++.+..|.+.+. +.|+.+||++|++++|.+++||||.|||+|||||||||+++||+|+++|+||||||||||
T Consensus 320 ~~g~~~~~~~~y~~~~~---r~s~~~~r~~A~~i~g~~v~~dwd~~rt~eG~y~~~~g~~~ai~r~~a~ap~aDliW~Et 396 (538)
T 1dqu_A 320 PLPNKKAAIEKYLTQSK---GKSNLEARAIAKEIAGTDIYFDWEAPRTREGYYRYQGGTQCAINRAVAYAPFADLIWMES 396 (538)
T ss_dssp SCSCHHHHHHHHHHHHT---TCCHHHHHHHHHHHHSSCCCCBTTSSCCTTCCEEECCSHHHHHHHHHHHTTSCSEEECCC
T ss_pred ccCccHHHHHHHHHHhc---cccHHHHHHHHHHHcCCCceecCCCCCCccceeEecCchHHHHHHhcccCcccceEEecc
Confidence 45567778899999875 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcCceeeeecchhhhhhhhhHHHHHHHH
Q 042063 411 ASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKDY 490 (575)
Q Consensus 411 ~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG~H~~~~~~~~la~~~ 490 (575)
++||++||++||++||++||++||+|||||||||+++ |||++|++|||||+|||||||||||||||++|++|++|||+|
T Consensus 397 ~~P~~~~a~~fa~~i~~~~P~~~LaYN~SPSFnW~~~-~~d~~~~~f~~~l~~~G~~~qfItLag~H~~~~~~~~la~~~ 475 (538)
T 1dqu_A 397 KLPDYKQAKEFADGVHAVWPEQKLAYNLSPSFNWKKA-MPRDEQETYIKRLGALGYAWQFITLAGLHTTALISDTFAKAY 475 (538)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCEEEEECCSSSCGGGT-SCHHHHHSHHHHHHHHTEEEEEETTHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCceEEecCCcchhhhhh-CCHHHHHHHHHHHHhcCceEEEEehhhhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHhcCCCccccccccCchhHHHHHHHhcCCcchhhcCCCCchhhhhhh
Q 042063 491 ARRGMLAYVERIQREERNNGVDTLAHQKWSGANYYDKYLKTVQGGISSTAAMGKGVTEDQFKE 553 (575)
Q Consensus 491 ~~~GM~aYv~~vQ~~E~~~g~d~~~HQkwsGa~y~D~~~~~v~~g~sst~a~g~~~te~qf~~ 553 (575)
+++||+|||++|||+|++.|||+++||||||++|+|.++++|+||+|||+|||+|+||+||++
T Consensus 476 ~~~gm~aYv~~vQ~~E~~~g~~~~~HQ~~~G~~y~D~~~~~~~~g~sst~a~~~~~te~qf~~ 538 (538)
T 1dqu_A 476 AKQGMRAYGELVQEPEMANGVDVVTHQKWSGANYVDNMLKMITGGVSSTAAMGKGVTEDQFKS 538 (538)
T ss_dssp HHHTHHHHHHHTHHHHHHHTCGGGSHHHHHTHHHHHHHHHHHHCC------------------
T ss_pred HHhCHHHHHHHHHHHHHhcCCCeeeccccccccHHHHHHHHhcCcchhhhhccCCCchhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999974
|
| >3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A | Back alignment and structure |
|---|
| >3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
| >3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* | Back alignment and structure |
|---|
| >1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A | Back alignment and structure |
|---|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 575 | ||||
| d1dqua_ | 519 | c.1.12.7 (A:) Isocitrate lyase {Aspergillus nidula | 0.0 | |
| d1igwa_ | 416 | c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [ | 6e-76 | |
| d1igwa_ | 416 | c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [ | 4e-51 | |
| d1f61a_ | 418 | c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tube | 4e-66 | |
| d1f61a_ | 418 | c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tube | 4e-48 | |
| d1muma_ | 289 | c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichi | 6e-14 | |
| d1s2wa_ | 275 | c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mus | 4e-06 | |
| d2p10a1 | 197 | c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 | 2e-05 |
| >d1dqua_ c.1.12.7 (A:) Isocitrate lyase {Aspergillus nidulans [TaxId: 162425]} Length = 519 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Aspergillus nidulans [TaxId: 162425]
Score = 642 bits (1657), Expect = 0.0
Identities = 291/527 (55%), Positives = 374/527 (70%), Gaps = 8/527 (1%)
Query: 9 SMILEEEGRFEAEVAEVQAWWNSERFRLTRRPYSARDVVALRGSLRQSYGSNEMAKKLWR 68
S I EE+ R+ EVA V+ WW R+R T+RP++A +VA RG+L+ Y SN AKKLW
Sbjct: 1 SYIEEEDQRYWDEVAAVKNWWKDSRWRYTKRPFTAEQIVAKRGNLKIEYPSNVQAKKLWG 60
Query: 69 TLKTHQANGTASRTFGALDPVQVTMMAKHLDSIYVSGWQCSSTHTSTNEPGPDLADYPYD 128
L+ + N AS T+G LDP VT MAK+LD++YVSGWQ SST +ST+EP PDLADYP +
Sbjct: 61 ILERNFKNKEASFTYGCLDPTMVTQMAKYLDTVYVSGWQSSSTASSTDEPSPDLADYPMN 120
Query: 129 TVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYLKPIIADGDTGFGGTTATVK 188
TVPNKV HL+ AQ +HDRKQRE RM+ +++R + VDYL+PIIAD DTG GG TA +K
Sbjct: 121 TVPNKVNHLWMAQLFHDRKQREERMTTPKDQRHKVANVDYLRPIIADADTGHGGLTAVMK 180
Query: 189 LCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLV 248
L KLFVERGAAG+HIEDQ+ TKKCGHMAGKVLV ISEHINRLVA R Q D+MG + + +
Sbjct: 181 LTKLFVERGAAGIHIEDQAPGTKKCGHMAGKVLVPISEHINRLVAIRAQADIMGTDLLAI 240
Query: 249 ARTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNW 308
ARTD+EAATLI + +D RDH FI+G TNP++ + L ++ A AGK GAELQAIED W
Sbjct: 241 ARTDSEAATLITSTIDHRDHPFIIGSTNPDI--QPLNDLMVMAEQAGKNGAELQAIEDEW 298
Query: 309 IAMAGLKTFSECVIDAVNNLNTGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKN 368
+A AGLK F++ V+DA+NN K+ + +++ S K S+ + R IA+ + +
Sbjct: 299 LAKAGLKLFNDAVVDAINNSPLP--NKKAAIEKYLTQS---KGKSNLEARAIAKEIAGTD 353
Query: 369 LFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWMETASPDLAECTKFAGGIKSK 428
+++DW+ PRTREG+YR++G AI R A+AP ADLIWME+ PD + +FA G+ +
Sbjct: 354 IYFDWEAPRTREGYYRYQGGTQCAINRAVAYAPFADLIWMESKLPDYKQAKEFADGVHAV 413
Query: 429 HPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAK 488
PE LAYNLSPSFNW + M +E + +I R+ LG+ WQFITLAG H AL+ DTFAK
Sbjct: 414 WPEQKLAYNLSPSFNWKKA-MPRDEQETYIKRLGALGYAWQFITLAGLHTTALISDTFAK 472
Query: 489 DYARRGMLAYVERIQREERNNGVDTLAHQKWSGANYYDKYLKTVQGG 535
YA++GM AY E +Q E NGVD + HQKWSGANY D LK + GG
Sbjct: 473 AYAKQGMRAYGELVQEPEMANGVDVVTHQKWSGANYVDNMLKMITGG 519
|
| >d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} Length = 416 | Back information, alignment and structure |
|---|
| >d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} Length = 416 | Back information, alignment and structure |
|---|
| >d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 418 | Back information, alignment and structure |
|---|
| >d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 418 | Back information, alignment and structure |
|---|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} Length = 289 | Back information, alignment and structure |
|---|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 275 | Back information, alignment and structure |
|---|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} Length = 197 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 575 | |||
| d1dqua_ | 519 | Isocitrate lyase {Aspergillus nidulans [TaxId: 162 | 100.0 | |
| d1igwa_ | 416 | Isocitrate lyase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1f61a_ | 418 | Isocitrate lyase {Mycobacterium tuberculosis [TaxI | 100.0 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 100.0 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 100.0 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 99.96 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 95.83 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 94.76 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 94.53 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 88.04 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 83.83 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 83.12 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 82.5 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 80.41 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 80.23 |
| >d1dqua_ c.1.12.7 (A:) Isocitrate lyase {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Aspergillus nidulans [TaxId: 162425]
Probab=100.00 E-value=5.1e-167 Score=1336.73 Aligned_cols=518 Identities=56% Similarity=0.943 Sum_probs=497.3
Q ss_pred chhHHhhhHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHhhCCccccCCchHHHHHHHHHHHhhhhCCCceeecCCCCHH
Q 042063 10 MILEEEGRFEAEVAEVQAWWNSERFRLTRRPYSARDVVALRGSLRQSYGSNEMAKKLWRTLKTHQANGTASRTFGALDPV 89 (575)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~ww~~~R~~~i~R~Yta~~v~~~rgs~~~~y~~~~~A~kL~~lL~~~~~~~~~l~~~Ga~D~~ 89 (575)
.+++|++.|+++|++|++||.+|||++|||||||+||++||||++++||++.+|+|||++|++..+++++++++||+||+
T Consensus 2 ~~~~e~~~~~~~i~~i~~w~~~pRw~gikR~Yta~dV~~lRgs~~~~~ts~~~A~kL~~lL~~~~~~~~~~~t~Ga~d~~ 81 (519)
T d1dqua_ 2 YIEEEDQRYWDEVAAVKNWWKDSRWRYTKRPFTAEQIVAKRGNLKIEYPSNVQAKKLWGILERNFKNKEASFTYGCLDPT 81 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSGGGGGCCCSSCHHHHHHHCCSSCCCCTHHHHHHHHHHHHHHHHHHTCCEEEEBCCSHH
T ss_pred cHhHHHHHHHHHHHHHHHHhcCccccCCCCCCCHHHHHHhcCCCCCcCchHHHHHHHHHHHHHHhhcCCceeecCcCCHH
Confidence 47899999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHHHHccCCeEeechHHHhhccCCCCCCCCCCCCCCcCcHHHHHHHHHHHhhhhHHHHHHHHhhccHhhhhcCCCCCCC
Q 042063 90 QVTMMAKHLDSIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPCVDYL 169 (575)
Q Consensus 90 sA~~~a~gf~AIy~SG~~vAa~~~~~~~g~PD~~~~p~~tv~~~v~rI~~aq~~hDr~q~~~r~~~~~e~~~~~~~vd~~ 169 (575)
+|.|+.+||++||+|||+||+++++++.|+||+++||+++||+.|++|+++|++|||+|+.+|+..+.+++...+.++|+
T Consensus 82 qA~q~~~gf~aiYlSGw~vAA~~~~~~~~~PD~~ly~~~svp~~v~~I~~a~~~~d~~q~~~~~~~~~~~~~~~~~~d~~ 161 (519)
T d1dqua_ 82 MVTQMAKYLDTVYVSGWQSSSTASSTDEPSPDLADYPMNTVPNKVNHLWMAQLFHDRKQREERMTTPKDQRHKVANVDYL 161 (519)
T ss_dssp HHHHHHHHCSCEEECHHHHHHHCCTTCCCCSSCSCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHTTSCCCCCC
T ss_pred HHHHHHhhCCEEEechHHHHhhhhcCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhccccchhhhhcccccccc
Confidence 99999889999999999999988888999999999999999999999999999999999999998888888888889999
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHHcCceEEEeccCCCcccccCCCCCCcccCHHHHHHHHHHHHHhhhhcCCceEEEE
Q 042063 170 KPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVA 249 (575)
Q Consensus 170 lPIIAD~DtGfGg~~nv~~lvk~~ieAGaAGIhIEDQ~~~~KkCGH~~Gk~Lvp~~E~v~RL~AAR~a~d~~g~d~vIiA 249 (575)
+|||||+||||||++||++|||.||++||+|||||||+++||||||++||+|||++||++||+|||+|+|++|+|+||||
T Consensus 162 ~PIIADaDtGfGg~~nv~~lvk~~ieAGaAgiHiEDQ~~~~KkCGHl~GKvlVp~~E~i~kl~AAr~A~d~~g~~~vIIA 241 (519)
T d1dqua_ 162 RPIIADADTGHGGLTAVMKLTKLFVERGAAGIHIEDQAPGTKKCGHMAGKVLVPISEHINRLVAIRAQADIMGTDLLAIA 241 (519)
T ss_dssp CCEEEECTTCSSSHHHHHHHHHHHHHTTCSEEEECSBCTTCC------CEEECCHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEeeccccccchHHHHHHHHHHHHcCCceEeehhccccchhccCcCCcEEecHHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eecccccCchHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCcccccHHHHHHHhccC
Q 042063 250 RTDAEAATLIQTNVDTRDHQFILGVTNPNLRGKALASILAEAMAAGKTGAELQAIEDNWIAMAGLKTFSECVIDAVNNLN 329 (575)
Q Consensus 250 RTDA~~a~~l~~aId~R~~aYi~Gat~~~~~~~a~ad~i~~~~s~g~s~~ei~~~~~~W~~~~~l~tf~ea~~~~l~~~~ 329 (575)
||||+++++|+++||+|+|+|+.|+|+++++ |+.|.+..++..|.+++++.+++++|..+++|+||+||+.+.++..
T Consensus 242 RTDA~~a~li~s~id~~d~~f~~G~~~~~~~--~~~~~~~~~e~~g~~g~~~~~~e~~w~~~~~l~tf~ea~~~~i~~~- 318 (519)
T d1dqua_ 242 RTDSEAATLITSTIDHRDHPFIIGSTNPDIQ--PLNDLMVMAEQAGKNGAELQAIEDEWLAKAGLKLFNDAVVDAINNS- 318 (519)
T ss_dssp ECCGGGEEEESCTTCGGGGGGEEEECCTTSC--CHHHHHHHHHHSCCCSHHHHHHHHHHHHHSCEECSHHHHHHHHHTS-
T ss_pred eechhhhcccccccchhcccccccccccccc--hhHHHHHHHHhhccchHHHHHHHHHHHHhccccchhHHHHHHHhhc-
Confidence 9999999999999999999999999999998 9999999999999999999999999999999999999999999876
Q ss_pred CCchhhHHHHHHHHhhcccCCCCCHHHHHHHHHHhCCCCccccCCCCCCCCccccccCcHHHHHHHhhhcCCcCcEEeec
Q 042063 330 TGEHEKRRRLNEWMNLSSYDKCLSSEQCREIAERLGLKNLFWDWDLPRTREGFYRFKGSVDAAIIRGWAFAPHADLIWME 409 (575)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~a~~~~~~~~~~dwd~~Rt~eG~y~~~gg~~~ai~R~~a~apyaDl~W~E 409 (575)
+++.+...+++|+... ++.|+.++|.+|+++.|.+++||||.|||+||||+||||+++||+|+++|||||||||||
T Consensus 319 -~~~~~~~~~~~~~~~~---~~~s~~~~~~~A~~~~~~~~~fdwd~~Rt~eG~y~~k~g~~~ai~r~~a~apyaDllW~E 394 (519)
T d1dqua_ 319 -PLPNKKAAIEKYLTQS---KGKSNLEARAIAKEIAGTDIYFDWEAPRTREGYYRYQGGTQCAINRAVAYAPFADLIWME 394 (519)
T ss_dssp -SCSCHHHHHHHHHHHH---TTCCHHHHHHHHHHHHSSCCCCBTTSSCCTTCCEEECCSHHHHHHHHHHHTTSCSEEECC
T ss_pred -cccchhHHHHHHHhhc---cccchHHHHHHHHHhcCCCccccccCCcCCCcceeecCCcHHHHHHHHhccchhhhhccc
Confidence 4556777888998875 478999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhHHhhhhhcCCCceeeecCCcccccccCCCCHHHHHhhHHHHHhcCceeeeecchhhhhhhhhHHHHHHH
Q 042063 410 TASPDLAECTKFAGGIKSKHPEIMLAYNLSPSFNWDASGMTDEEMKDFIPRIAKLGFCWQFITLAGFHADALVVDTFAKD 489 (575)
Q Consensus 410 t~~P~l~~a~~Fa~~i~~~~P~~~laYN~SPSFnW~~~G~s~~~i~~F~~~L~~~G~~~Q~ItLaG~H~~~~~~~~la~~ 489 (575)
|++||++||++||++||++||++||||||||||||+++ |+++++++|+++|++|||+||||||||||++|++|++||++
T Consensus 395 T~~Pdl~~a~~Fa~~I~~~~P~~~LaYN~SPSFNW~~~-~~~d~~~~f~~~L~~~G~~~qfITLag~Hs~a~~~~~lA~~ 473 (519)
T d1dqua_ 395 SKLPDYKQAKEFADGVHAVWPEQKLAYNLSPSFNWKKA-MPRDEQETYIKRLGALGYAWQFITLAGLHTTALISDTFAKA 473 (519)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCEEEEECCSSSCGGGT-SCHHHHHSHHHHHHHHTEEEEEETTHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhCCCceeeecCCCCcchhhc-CCHHHHHHHHHHHHhcCceEEEechHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 88889999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHhcCCCccccccccCchhHHHHHHHhcCC
Q 042063 490 YARRGMLAYVERIQREERNNGVDTLAHQKWSGANYYDKYLKTVQGG 535 (575)
Q Consensus 490 ~~~~GM~aYv~~vQ~~E~~~g~d~~~HQkwsGa~y~D~~~~~v~~g 535 (575)
|+++||+|||++|||+|+++|||+++||+|||++|+|.++++|+||
T Consensus 474 y~~~GM~AYv~~vQ~~E~~~g~~~~~HQ~~~G~~y~D~~~~~v~gg 519 (519)
T d1dqua_ 474 YAKQGMRAYGELVQEPEMANGVDVVTHQKWSGANYVDNMLKMITGG 519 (519)
T ss_dssp HHHHTHHHHHHHTHHHHHHHTCGGGSHHHHHTHHHHHHHHHHHHCC
T ss_pred HHHcChHHHHHHHHHHHHHcCCCeechhhhhcccHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999998
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| >d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
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| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
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| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
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| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
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| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
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| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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