Citrus Sinensis ID: 042077

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
SLSREPNIPLDLQFHNEKKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKNFNEKYLEIELL
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
slsrepnipldlqfhNEKKEEIEKLRGLVRDCVSKHLYSSAIFFADKIaaltndptgvYMQAQALFLgrhyrrpfhllnaskivprdlRFRYLAEQKNFNEKYLEIELL
Flexible Loop (DISEMBL)
slsrepnipldlqfhnekKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLlnaskivprdlRFRYLAeqknfnekyleiell
Low Complexity Region (SEG)
SLSREPNIPLDLQFHNEKKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKNFNEKYLEIELL
Disordered region (IsUnstruct)
*********************IEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKNFNEKYLE****
Disordered Region (DISOPRED)
*******************EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKNFNEKYLEIELL
Disordered Region (DISEMBL)
SLSREPNIPLDLQFHNEKKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKNFNEKYLEIELL
Disordered Region (DISPRO)
*****PNIPLDLQFHNEKKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKNFNEKYLEIELL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
SLSREPNIPLDLQFHNEKKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKNFNEKYLEIELL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
B3DNN5	543	Anaphase-promoting comple	yes	no	0.724	0.145	0.848	5e-35
Q13042	620	Cell division cycle prote	yes	no	0.743	0.130	0.365	6e-07
Q8R349	620	Cell division cycle prote	yes	no	0.743	0.130	0.378	8e-07
P09798	840	Anaphase-promoting comple	yes	no	0.660	0.085	0.291	0.0005

>sp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana GN=APC6 PE=2 SV=1

 Score =  146 bits (368), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 75/79 (94%)

Query: 18 KKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHL 77
          ++EEIEK+RG+VRDCVSKHLYSSAIFFADK+AALTNDP+ +YMQAQALFLGRHYRR FHL
Sbjct: 2  REEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFHL 61

Query: 78 LNASKIVPRDLRFRYLAEQ 96
          LNASKIV RDLRFRYLA +
Sbjct: 62 LNASKIVLRDLRFRYLAAK 80

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication.
Arabidopsis thaliana (taxid: 3702)

>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 22  IEKLRGLVRDCVSKHLYSSAIFFADKIAALT-NDPTGVYMQAQALFLGRHYRRPFHLLNA 80
           +E+LR  VR  + +  Y SA+F+ADK+A+L+  +P  +Y  AQ L+L   Y R  H L +
Sbjct: 3   LERLRKRVRQYLDQQQYQSALFWADKVASLSREEPQDIYWLAQCLYLTAQYHRAAHALRS 62

Query: 81  SKIVPRDLRFRYLAEQKNFNEK 102
            K+       RYLA + ++  K
Sbjct: 63  RKLDKLYEACRYLAARCHYAAK 84

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Homo sapiens (taxid: 9606)

>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 22  IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80
           +E LR  VR  + +  Y SA+F+ADK+A+L++ +P  VY  AQ L+L   Y R  H L +
Sbjct: 3   LEPLRKRVRQYLDQQQYQSALFWADKVASLSHEEPQDVYWLAQCLYLTAQYHRAAHALRS 62

Query: 81  SKIVPRDLRFRYLAEQKNFNEK 102
            K+       RYLA + ++  K
Sbjct: 63  RKLDKLYEACRYLAARCHYAAK 84

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

>sp|P09798|CDC16_YEAST Anaphase-promoting complex subunit CDC16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC16 PE=1 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 37/72 (51%)

Query: 22  IEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS 81
           IE+LR    D + +H+Y +A + ADK+  ++NDP   +   Q  +    Y R   L+  +
Sbjct: 230 IERLRLWRFDALMQHMYRTAEYIADKVYNISNDPDDAFWLGQVYYNNNQYVRAVELITRN 289

Query: 82  KIVPRDLRFRYL 93
            +   ++  RYL
Sbjct: 290 NLDGVNILCRYL 301

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. In early mitosis, the APC/C is activated by CDC20 and targets securin PDS1, the B-type cyclin CLB5, and other anaphase inhibitory proteins for proteolysis, thereby triggering the separation of sister chromatids at the metaphase-to-anaphase transition. In late mitosis and in G1, degradation of CLB5 allows activation of the APC/C by CDH1, which is needed to destroy CDC20 and the B-type cyclin CLB2 to allow exit from mitosis and creating the low CDK state necessary for cytokinesis and for reforming prereplicative complexes in G1 prior to another round of replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
3834317	521	Similar to CDC16 protein gb|U18291 (CDC1	0.724	0.151	0.848	2e-33
18412102	543	anaphase-promoting complex subunit 6 [Ar	0.724	0.145	0.848	2e-33
22324595	542	anaphase promoting complex/cyclosome sub	0.724	0.145	0.848	2e-33
297839749	543	cell division cycle family protein [Arab	0.724	0.145	0.848	3e-33
224116978	542	predicted protein [Populus trichocarpa]	0.706	0.142	0.844	3e-32
255565311	655	cell division cycle, putative [Ricinus c	0.724	0.120	0.822	3e-32
225461701	545	PREDICTED: anaphase-promoting complex su	0.770	0.154	0.752	5e-32
255578574	469	cell division cycle, putative [Ricinus c	0.724	0.168	0.810	1e-31
356517052	545	PREDICTED: anaphase-promoting complex su	0.724	0.144	0.810	2e-31
356545461	547	PREDICTED: anaphase-promoting complex su	0.724	0.144	0.810	1e-30

>gi|3834317|gb|AAC83033.1| Similar to CDC16 protein gb|U18291 (CDC16Hs) from Homo sapiens [Arabidopsis thaliana]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 75/79 (94%)

Query: 18 KKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHL 77
          ++EEIEK+RG+VRDCVSKHLYSSAIFFADK+AALTNDP+ +YMQAQALFLGRHYRR FHL
Sbjct: 2  REEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFHL 61

Query: 78 LNASKIVPRDLRFRYLAEQ 96
          LNASKIV RDLRFRYLA +
Sbjct: 62 LNASKIVLRDLRFRYLAAK 80

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412102|ref|NP_565188.1| anaphase-promoting complex subunit 6 [Arabidopsis thaliana] gi|302595634|sp|B3DNN5.1|CDC16_ARATH RecName: Full=Anaphase-promoting complex subunit 6; AltName: Full=Cell division cycle protein 16 homolog; Short=CDC16 homolog; AltName: Full=Cyclosome subunit 6; AltName: Full=Protein NOMEGA gi|190016006|gb|ACE62891.1| At1g78770 [Arabidopsis thaliana] gi|332198027|gb|AEE36148.1| anaphase-promoting complex subunit 6 [Arabidopsis thaliana]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 75/79 (94%)

Query: 18 KKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHL 77
          ++EEIEK+RG+VRDCVSKHLYSSAIFFADK+AALTNDP+ +YMQAQALFLGRHYRR FHL
Sbjct: 2  REEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFHL 61

Query: 78 LNASKIVPRDLRFRYLAEQ 96
          LNASKIV RDLRFRYLA +
Sbjct: 62 LNASKIVLRDLRFRYLAAK 80

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22324595|gb|AAM95623.1| anaphase promoting complex/cyclosome subunit [Arabidopsis thaliana]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 75/79 (94%)

Query: 18 KKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHL 77
          ++EEIEK+RG+VRDCVSKHLYSSAIFFADK+AALTNDP+ +YMQAQALFLGRHYRR FHL
Sbjct: 2  REEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFHL 61

Query: 78 LNASKIVPRDLRFRYLAEQ 96
          LNASKIV RDLRFRYLA +
Sbjct: 62 LNASKIVLRDLRFRYLAAK 80

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839749|ref|XP_002887756.1| cell division cycle family protein [Arabidopsis lyrata subsp. lyrata] gi|297333597|gb|EFH64015.1| cell division cycle family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 74/79 (93%)

Query: 18 KKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHL 77
          ++EEIEK+RG+VRDCVSKHLYSSAIFFADK+AALTNDP  +YMQAQALFLGRHYRR FHL
Sbjct: 2  REEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPADIYMQAQALFLGRHYRRAFHL 61

Query: 78 LNASKIVPRDLRFRYLAEQ 96
          LNASKIV RDLRFRYLA +
Sbjct: 62 LNASKIVLRDLRFRYLAAK 80

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116978|ref|XP_002331799.1| predicted protein [Populus trichocarpa] gi|222874495|gb|EEF11626.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 72/77 (93%)

Query: 18 KKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHL 77
          ++E+IEKLRG+VRDCVSKHLYSSAIFFADK+AA TNDP  +YMQAQALFLGRHYRR +HL
Sbjct: 2  REEQIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTNDPADIYMQAQALFLGRHYRRAYHL 61

Query: 78 LNASKIVPRDLRFRYLA 94
          LNASKIV RDLRFRYLA
Sbjct: 62 LNASKIVLRDLRFRYLA 78

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565311|ref|XP_002523647.1| cell division cycle, putative [Ricinus communis] gi|223537099|gb|EEF38733.1| cell division cycle, putative [Ricinus communis]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/79 (82%), Positives = 72/79 (91%)

Query: 18 KKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHL 77
          ++E+IEKLRG+VRDCVSKHLYSSAIFFADK+A  TNDP  +YMQAQALFLGRHYRR FHL
Sbjct: 2  REEQIEKLRGVVRDCVSKHLYSSAIFFADKVATFTNDPADIYMQAQALFLGRHYRRAFHL 61

Query: 78 LNASKIVPRDLRFRYLAEQ 96
          LNASKIV RDLRFRYLA +
Sbjct: 62 LNASKIVLRDLRFRYLAAK 80

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461701|ref|XP_002283201.1| PREDICTED: anaphase-promoting complex subunit 6 [Vitis vinifera] gi|302142883|emb|CBI20178.3| unnamed protein product [Vitis vinifera]

 Score =  141 bits (355), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/89 (75%), Positives = 78/89 (87%), Gaps = 5/89 (5%)

Query: 18  KKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHL 77
           ++EEIEKLRG+VRDC+SKHLYSSAIFFADK+AA T+DP  +YMQAQALFLGRHYRR FHL
Sbjct: 2   REEEIEKLRGVVRDCLSKHLYSSAIFFADKVAAFTSDPADIYMQAQALFLGRHYRRAFHL 61

Query: 78  LNASKIVPRDLRFRYLA-----EQKNFNE 101
           LNAS+IV RDLRFRYLA     EQK +++
Sbjct: 62  LNASQIVLRDLRFRYLAAKCLEEQKEWDQ 90

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578574|ref|XP_002530149.1| cell division cycle, putative [Ricinus communis] gi|223530348|gb|EEF32241.1| cell division cycle, putative [Ricinus communis]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/79 (81%), Positives = 72/79 (91%)

Query: 18 KKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHL 77
          ++E+IEKLRG+VRDCVSKHLYSSAIFFADK+A  TNDP  +YMQAQALFLGRH+RR FHL
Sbjct: 2  REEQIEKLRGVVRDCVSKHLYSSAIFFADKVATFTNDPADIYMQAQALFLGRHFRRAFHL 61

Query: 78 LNASKIVPRDLRFRYLAEQ 96
          LNASKIV RDLRFRYLA +
Sbjct: 62 LNASKIVLRDLRFRYLAAK 80

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517052|ref|XP_003527204.1| PREDICTED: anaphase-promoting complex subunit 6-like [Glycine max]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/79 (81%), Positives = 71/79 (89%)

Query: 18 KKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHL 77
          ++EE+EKLRG+VRDCVSKHLYSSAIFFADK+AA T DP  +YMQAQALFLGRHYRR FHL
Sbjct: 2  REEEMEKLRGVVRDCVSKHLYSSAIFFADKVAAFTADPADIYMQAQALFLGRHYRRAFHL 61

Query: 78 LNASKIVPRDLRFRYLAEQ 96
          LNASKIV  DLRFRYLA +
Sbjct: 62 LNASKIVLTDLRFRYLAAK 80

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545461|ref|XP_003541161.1| PREDICTED: anaphase-promoting complex subunit 6-like [Glycine max]

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/79 (81%), Positives = 71/79 (89%)

Query: 18 KKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHL 77
          ++EE+EKLRG+VRDCVSKHLYSSAIFFADK+AA T DP  +YMQAQALFLGRHYRR FHL
Sbjct: 2  REEEMEKLRGVVRDCVSKHLYSSAIFFADKVAAFTADPADIYMQAQALFLGRHYRRAFHL 61

Query: 78 LNASKIVPRDLRFRYLAEQ 96
          LNASKIV  DLRFRYLA +
Sbjct: 62 LNASKIVLTDLRFRYLAAK 80

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2037523	543	APC6 "anaphase promoting compl	0.706	0.141	0.870	5.6e-32
UNIPROTKB|E1BPM5	620	CDC16 "Uncharacterized protein	0.743	0.130	0.390	2.3e-08
UNIPROTKB|F1P4A5	623	CDC16 "Uncharacterized protein	0.743	0.130	0.365	1e-07
UNIPROTKB|E2R5H6	620	CDC16 "Uncharacterized protein	0.743	0.130	0.365	1.3e-07
UNIPROTKB|Q13042	620	CDC16 "Cell division cycle pro	0.743	0.130	0.365	1.6e-07
ZFIN|ZDB-GENE-051113-132	616	cdc16 "cell division cycle 16	0.743	0.131	0.365	2.1e-07
MGI|MGI:1917207	620	Cdc16 "CDC16 cell division cyc	0.743	0.130	0.378	2.1e-07
RGD|1305076	620	Cdc16 "cell division cycle 16"	0.743	0.130	0.378	2.1e-07
UNIPROTKB|I3L944	620	CDC16 "Uncharacterized protein	0.596	0.104	0.393	1.1e-05
UNIPROTKB|G4N150	664	MGG_07440 "Anaphase-promoting	0.642	0.105	0.385	3.2e-05

TAIR|locus:2037523 APC6 "anaphase promoting complex 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 5.6e-32, P = 5.6e-32
 Identities = 67/77 (87%), Positives = 74/77 (96%)

Query:    18 KKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHL 77
             ++EEIEK+RG+VRDCVSKHLYSSAIFFADK+AALTNDP+ +YMQAQALFLGRHYRR FHL
Sbjct:     2 REEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFHL 61

Query:    78 LNASKIVPRDLRFRYLA 94
             LNASKIV RDLRFRYLA
Sbjct:    62 LNASKIVLRDLRFRYLA 78

GO:0005634 "nucleus" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0032875 "regulation of DNA endoreduplication" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0007276 "gamete generation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009555 "pollen development" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016568 "chromatin modification" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051302 "regulation of cell division" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

UNIPROTKB|E1BPM5 CDC16 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 32/82 (39%), Positives = 48/82 (58%)

Query:    22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80
             +E+LR  VR  + +  Y SA+F+ADK+A+L++ DP  +Y  AQ L+L   Y R  H L +
Sbjct:     3 LERLRKRVRQYLDQQQYQSALFWADKVASLSHEDPRDIYWLAQCLYLTAQYHRAAHALRS 62

Query:    81 SKIVPRDLRFRYLAEQKNFNEK 102
              K+       RYLA + +F  K
Sbjct:    63 RKLDKLYEACRYLAARCHFAAK 84

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|F1P4A5 CDC16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 30/82 (36%), Positives = 48/82 (58%)

Query:    22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTND-PTGVYMQAQALFLGRHYRRPFHLLNA 80
             +E+LR  VR  + +  Y SA+F+ADK+A+L+++ P  +Y  AQ L+L   Y R  H L +
Sbjct:     3 LERLRKRVRHYIDQQQYQSALFWADKVASLSHEEPQDIYWLAQCLYLTAQYHRAAHALRS 62

Query:    81 SKIVPRDLRFRYLAEQKNFNEK 102
              K+       RYLA + ++  K
Sbjct:    63 RKLDKLYEACRYLAARCHYAAK 84

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

UNIPROTKB|E2R5H6 CDC16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 30/82 (36%), Positives = 48/82 (58%)

Query:    22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTND-PTGVYMQAQALFLGRHYRRPFHLLNA 80
             +E+LR  VR  + +  Y SA+F+ADK+A+L+++ P  +Y  AQ L+L   Y R  H L +
Sbjct:     3 LERLRKRVRQYLDQQQYQSALFWADKVASLSHEEPQDIYWLAQCLYLTAQYHRAAHALRS 62

Query:    81 SKIVPRDLRFRYLAEQKNFNEK 102
              K+       RYLA + ++  K
Sbjct:    63 RKLDKLYEACRYLAARCHYAAK 84

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|Q13042 CDC16 "Cell division cycle protein 16 homolog" [Homo sapiens (taxid:9606)]

 Score = 130 (50.8 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 30/82 (36%), Positives = 47/82 (57%)

Query:    22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTND-PTGVYMQAQALFLGRHYRRPFHLLNA 80
             +E+LR  VR  + +  Y SA+F+ADK+A+L+ + P  +Y  AQ L+L   Y R  H L +
Sbjct:     3 LERLRKRVRQYLDQQQYQSALFWADKVASLSREEPQDIYWLAQCLYLTAQYHRAAHALRS 62

Query:    81 SKIVPRDLRFRYLAEQKNFNEK 102
              K+       RYLA + ++  K
Sbjct:    63 RKLDKLYEACRYLAARCHYAAK 84

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0005819 "spindle" evidence=TAS

GO:0007088 "regulation of mitosis" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005813 "centrosome" evidence=IDA

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-051113-132 cdc16 "cell division cycle 16 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 30/82 (36%), Positives = 48/82 (58%)

Query:    22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA 80
             +++LR  VR  + +  Y SA+F+ADKIA+L++ DP  +Y  AQ L+L   Y R  H L +
Sbjct:     3 LDRLRKRVRHYIDQQQYQSALFWADKIASLSHEDPQDIYWLAQCLYLTAQYHRASHALRS 62

Query:    81 SKIVPRDLRFRYLAEQKNFNEK 102
              K+       +YLA + ++  K
Sbjct:    63 RKLDKLYGACQYLAARCHYAAK 84

GO:0007049 "cell cycle" evidence=IMP

GO:0051301 "cell division" evidence=IEA

MGI|MGI:1917207 Cdc16 "CDC16 cell division cycle 16" [Mus musculus (taxid:10090)]

 Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 31/82 (37%), Positives = 47/82 (57%)

Query:    22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTND-PTGVYMQAQALFLGRHYRRPFHLLNA 80
             +E LR  VR  + +  Y SA+F+ADK+A+L+++ P  VY  AQ L+L   Y R  H L +
Sbjct:     3 LEPLRKRVRQYLDQQQYQSALFWADKVASLSHEEPQDVYWLAQCLYLTAQYHRAAHALRS 62

Query:    81 SKIVPRDLRFRYLAEQKNFNEK 102
              K+       RYLA + ++  K
Sbjct:    63 RKLDKLYEACRYLAARCHYAAK 84

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005876 "spindle microtubule" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

RGD|1305076 Cdc16 "cell division cycle 16" [Rattus norvegicus (taxid:10116)]

 Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 31/82 (37%), Positives = 47/82 (57%)

Query:    22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTND-PTGVYMQAQALFLGRHYRRPFHLLNA 80
             +E LR  VR  + +  Y SA+F+ADK+A+L+++ P  VY  AQ L+L   Y R  H L +
Sbjct:     3 LEPLRKRVRQYLDQQQYQSALFWADKVASLSHEEPQDVYWLAQCLYLTAQYHRAAHALRS 62

Query:    81 SKIVPRDLRFRYLAEQKNFNEK 102
              K+       RYLA + ++  K
Sbjct:    63 RKLDKLYEACRYLAARCHYAAK 84

GO:0005634 "nucleus" evidence=ISO

GO:0005680 "anaphase-promoting complex" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005876 "spindle microtubule" evidence=IEA;ISO

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA;ISO

UNIPROTKB|I3L944 CDC16 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query:    38 YSSAIFFADKIAALTND-PTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQ 96
             Y SA+F+ADK+A+L+++ P  +Y  AQ L+L   Y R  H L + K+       RYLA +
Sbjct:    19 YQSALFWADKVASLSHEEPQDIYWLAQCLYLTAQYHRAAHALRSRKLDKLYEACRYLAAR 78

Query:    97 KNFNEK 102
              +F  K
Sbjct:    79 CHFAAK 84

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|G4N150 MGG_07440 "Anaphase-promoting complex subunit cut9" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 109 (43.4 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 27/70 (38%), Positives = 37/70 (52%)

Query:    25 LRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIV 84
             LR   +D ++K  Y SAIF  DK+ A+T D    +  AQ  F    Y R   LL+ S +V
Sbjct:     5 LRDWRQDALNKAQYESAIFVGDKLLAITGDDKDAFWLAQVHFASGSYTRAQALLSKSDLV 64

Query:    85 PRDLRFRYLA 94
              R+   RYL+
Sbjct:    65 SRNPSCRYLS 74

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B3DNN5	CDC16_ARATH	No assigned EC number	0.8481	0.7247	0.1454	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	APC6	cell division cycle family protein; cell division cycle family protein; FUNCTIONS IN- binding; INVOLVED IN- cell cycle; LOCATED IN- cellular_component unknown; EXPRESSED IN- 19 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- Tetratricopeptide TPR-1 (InterPro-IPR001440), Tetratricopeptide-like helical (InterPro-IPR011990), Tetratricopeptide region (InterPro-IPR013026); BEST Arabidopsis thaliana protein match is- SEC (secret agent); transferase, transferring glycosyl groups (TAIR-AT3G04240.1); Has 8496 Blast hits to 5575 proteins in 581 species- Archae - [...] (543 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	APC8	APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8); binding; anaphase-promoting complex or cyclosome s [...] (579 aa)				•	•	•	•	•	0.996
	APC10	anaphase-promoting complex, subunit 10 family / APC10 family; anaphase-promoting complex, subun [...] (192 aa)					•	•	•		0.996
	APC2	APC2; ubiquitin protein ligase binding / ubiquitin-protein ligase; a highly conserved ubiquitin [...] (865 aa)					•	•	•		0.992
	HBT	HBT (HOBBIT); binding; Required for cell division and cell differentiation in meristems. Encode [...] (744 aa)					•	•	•	•	0.990
	FZR3	FZR3 (FIZZY-RELATED 3); signal transducer; FIZZY-RELATED 3 (FZR3); FUNCTIONS IN- signal transdu [...] (481 aa)				•	•	•	•		0.984
	AT2G39090	tetratricopeptide repeat (TPR)-containing protein; tetratricopeptide repeat (TPR)-containing pr [...] (558 aa)					•	•	•		0.983
	CCS52A2	CCS52A2; signal transducer; Encodes a putative activator of the anaphase-promoting complex/cycl [...] (475 aa)					•	•	•		0.981
	AT1G06590	unknown protein; unknown protein; INVOLVED IN- biological_process unknown; EXPRESSED IN- 20 pla [...] (916 aa)				•		•	•		0.980
	AT3G25980	mitotic spindle checkpoint protein, putative (MAD2); mitotic spindle checkpoint protein, putati [...] (209 aa)				•	•	•	•		0.974
	CDC27a	CDC27a; binding; Subunit in the anaphase-promoting complex. Role in gametogenesis, control of m [...] (717 aa)					•	•	•	•	0.960

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	109
pfam12895	80	pfam12895, Apc3, Anaphase-promoting complex, cyclo	1e-08

>gnl|CDD|221837 pfam12895, Apc3, Anaphase-promoting complex, cyclosome, subunit 3

 Score = 47.6 bits (114), Expect = 1e-08
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 35 KHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLA 94
          +  Y +AIF A+K+ ALT      Y+ AQ  FL   Y+R + LL   K+       RYL 
Sbjct: 2  QGNYENAIFLAEKLLALTPSNEDAYLLAQCYFLQGQYKRAYELLRKLKLDNS-SGCRYLL 60

Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.86
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.43
PF04049	142	APC8: Anaphase promoting complex subunit 8 / Cdc23	98.07
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.68
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.51
PF13371	73	TPR_9: Tetratricopeptide repeat	97.11
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.09
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.7
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.35
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.09
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.02
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.01
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	95.99
TIGR02552	135	LcrH_SycD type III secretion low calcium response	95.51
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	95.27
PRK15359	144	type III secretion system chaperone protein SscB;	95.22
KOG1126	638	consensus DNA-binding cell division cycle control	95.12
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	94.84
PRK15359	144	type III secretion system chaperone protein SscB;	94.77
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.75
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	94.65
PRK10370	198	formate-dependent nitrite reductase complex subuni	94.4
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	93.65
PRK10803	263	tol-pal system protein YbgF; Provisional	93.62
PRK12370	553	invasion protein regulator; Provisional	93.54
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	93.53
PF13428	44	TPR_14: Tetratricopeptide repeat	93.4
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	93.3
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	93.28
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	93.18
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	92.88
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.47
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	92.29
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	92.14
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	92.01
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	91.69
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	91.42
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	91.38
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.28
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	91.04
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	91.02
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	90.69
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	90.51
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	90.45
PF13431	34	TPR_17: Tetratricopeptide repeat	90.07
PRK15331	165	chaperone protein SicA; Provisional	90.0
PRK12370	553	invasion protein regulator; Provisional	89.91
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	89.32
PRK11788	389	tetratricopeptide repeat protein; Provisional	89.21
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	89.18
PRK11788	389	tetratricopeptide repeat protein; Provisional	88.49
PF13371	73	TPR_9: Tetratricopeptide repeat	88.29
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	86.57
PF13512	142	TPR_18: Tetratricopeptide repeat	86.41
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	86.26
PRK11189	296	lipoprotein NlpI; Provisional	86.03
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	85.97
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	85.84
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	85.25
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	85.13
KOG2003	840	consensus TPR repeat-containing protein [General f	84.72
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	84.46
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.36
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	84.32
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	83.86
PRK11189	296	lipoprotein NlpI; Provisional	83.74
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	83.32
PRK10370	198	formate-dependent nitrite reductase complex subuni	83.31
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	83.25
PRK10803	263	tol-pal system protein YbgF; Provisional	83.2
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	83.17
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	82.27
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	81.68

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=5.4e-22  Score=169.08  Aligned_cols=86  Identities=45%  Similarity=0.787  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHhhcc---
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKN---   98 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~c~---   98 (109)
                      +++.|.++++++++|+|+||+|||||+..++++|.|+||+|||||.+|||+||.++|+.+++...++.||||+|+|+   
T Consensus        16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l   95 (611)
T KOG1173|consen   16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL   95 (611)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            55566666699999999999999999999999999999999999999999999999999999999999999999998   


Q ss_pred             --hhHHHhhhh
Q 042077           99 --FNEKYLEIE  107 (109)
Q Consensus        99 --~~~al~~~~  107 (109)
                        |++++++|.
T Consensus        96 k~~~~al~vl~  106 (611)
T KOG1173|consen   96 KEWDQALLVLG  106 (611)
T ss_pred             HHHHHHHHHhc
Confidence              567777764

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.43  E-value=1.4e-13  Score=89.00  Aligned_cols=73  Identities=25%  Similarity=0.440  Sum_probs=60.9

Q ss_pred             HhCCchhHHHHHHHHHhhcC-CchhHHHH--HHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHhhcc-----hhHHHhh
Q 042077           34 SKHLYSSAIFFADKIAALTN-DPTGVYMQ--AQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKN-----FNEKYLE  105 (109)
Q Consensus        34 ~~h~Y~tAiF~ADKl~als~-~~~dv~lL--Aq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~c~-----~~~al~~  105 (109)
                      ++++|++|+++.||++..++ ++++.+|+  |+|||+.|+|.+|+.++++.+....++.|+|+.|+|+     |++|+..
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            57999999999999999998 45666666  9999999999999999988666667889999999998     4566554


Q ss_pred             h
Q 042077          106 I  106 (109)
Q Consensus       106 ~  106 (109)
                      .
T Consensus        81 l   81 (84)
T PF12895_consen   81 L   81 (84)
T ss_dssp             H
T ss_pred             H
Confidence            4

>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8)

Probab=98.07  E-value=1.5e-05  Score=57.71  Aligned_cols=75  Identities=25%  Similarity=0.421  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-------------------------------CchhHHHHHHHHhhc
Q 042077           20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-------------------------------DPTGVYMQAQALFLG   68 (109)
Q Consensus        20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-------------------------------~~~dv~lLAq~~y~~   68 (109)
                      +.-..||..+++|-+.+.|.+|=.-||-+..|.+                               ...|.|+||+.||-.
T Consensus         8 ~ir~~L~~a~~~~s~RgL~~saKWaaElL~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~yllAksyFD~   87 (142)
T PF04049_consen    8 EIRSELRQAIRECSERGLYQSAKWAAELLNGLPPPWRDDTPDDPSSSPSSSQLSPSSPSEDQLESKEYDKYLLAKSYFDC   87 (142)
T ss_pred             HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCcccccccccccCCCccccCCCChhhhhhhhhHHHHHHHHHHHhch
Confidence            5678899999999999999999999999999981                               013999999999999


Q ss_pred             CChHHHHHHHhcCCCCCCChhhHHHHhhcc
Q 042077           69 RHYRRPFHLLNASKIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        69 gqy~RA~~LL~~~~L~~~~~~crYLaA~c~   98 (109)
                      ++|.||.+.|++.    +++.+++|.-.+.
T Consensus        88 kEy~RaA~~L~~~----~s~~~~FL~lYs~  113 (142)
T PF04049_consen   88 KEYDRAAHVLKDC----KSPKALFLRLYSR  113 (142)
T ss_pred             hHHHHHHHHHccC----CCchHHHHHHHHH
Confidence            9999999999984    3555555544443

This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.68  E-value=0.00016  Score=43.83  Aligned_cols=49  Identities=20%  Similarity=0.246  Sum_probs=44.4

Q ss_pred             HHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077           33 VSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS   81 (109)
Q Consensus        33 L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~   81 (109)
                      +.++.|+.|+-+-++++...+ +++-.+.||+||+..|++..|..++.+-
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            578999999999999999998 7788889999999999999999999884

...

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.51  E-value=0.00078  Score=45.43  Aligned_cols=77  Identities=16%  Similarity=0.147  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF   99 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~   99 (109)
                      ..+-....-++.+++|+.|+.+.++++.+.+ ++.-.+.+|++++..|++..|...+++. .+...++.-.|..|.|++
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   96 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            4455677778889999999999999999876 6778889999999999999999877664 445667777888888763

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.11  E-value=0.0015  Score=39.98  Aligned_cols=52  Identities=19%  Similarity=0.254  Sum_probs=46.9

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS   81 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~   81 (109)
                      .-++.++.|+.|+-+.|+++.+.+ ++.-.+..|.|++..|+|..|...+++.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~   55 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERA   55 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence            346789999999999999999987 7888888999999999999999988763

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.09  E-value=0.0061  Score=43.74  Aligned_cols=95  Identities=13%  Similarity=0.070  Sum_probs=65.7

Q ss_pred             CCCCCCcccccchhhhH------------HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCc----hhHHHHHHHHh
Q 042077            3 SREPNIPLDLQFHNEKK------------EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDP----TGVYMQAQALF   66 (109)
Q Consensus         3 ~~~~~~~~d~~~~~~~~------------~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~----~dv~lLAq~~y   66 (109)
                      ||.+|| .|-+|..|-|            ....-+..+-.-+...+.|+.|+.+.++.+...+++    ...+.+|.+++
T Consensus         5 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~   83 (172)
T PRK02603          5 QRNDNF-IDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA   83 (172)
T ss_pred             ccccch-HhHHHHHHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence            455665 4666555543            233345566667788999999999999999887643    36788999999


Q ss_pred             hcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           67 LGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        67 ~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ..|+|..|...+++. .+...+....+..+.++
T Consensus        84 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  116 (172)
T PRK02603         84 SNGEHDKALEYYHQALELNPKQPSALNNIAVIY  116 (172)
T ss_pred             HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            999999999987753 22233444444444444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.70  E-value=0.0043  Score=37.39  Aligned_cols=52  Identities=15%  Similarity=0.252  Sum_probs=45.9

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      -...+.++.|+.|+=.-++++...+ +++-.+++|.|++..|++..|...+++
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~   56 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYER   56 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3456789999999999999999997 788999999999999999999998876

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.35  E-value=0.018  Score=46.58  Aligned_cols=65  Identities=18%  Similarity=0.198  Sum_probs=29.2

Q ss_pred             HHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077           33 VSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK   97 (109)
Q Consensus        33 L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c   97 (109)
                      +..+.|+.|+=.+++++.+.+ ++...+.+|.+++..|+|..|...+++. .+...+.......++|
T Consensus        47 ~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         47 IKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            344455555555555544444 3334444455555555555555444431 2223334444444444

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.09  E-value=0.057  Score=31.18  Aligned_cols=71  Identities=15%  Similarity=0.155  Sum_probs=51.6

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ....+..++.++.|+-+.++++...+ ++.-.+.+|.+++..|++..|...+++. .....+....+..|.++
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   78 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence            44455668999999999999988876 4467788999999999999999988763 22233444444445444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.02  E-value=0.018  Score=34.88  Aligned_cols=57  Identities=16%  Similarity=0.137  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcC-ChHHHHHHHhc
Q 042077           24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGR-HYRRPFHLLNA   80 (109)
Q Consensus        24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~g-qy~RA~~LL~~   80 (109)
                      .+...=.-+..++.|+.|+-.-+|.+.+.+ ++.-.+.+|.|++..| ++.+|+..+++
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            344555667889999999999999999987 6778899999999999 79999987765

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.01  E-value=0.0077  Score=38.33  Aligned_cols=55  Identities=24%  Similarity=0.301  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +-.+..-+...+.|+.|+=+.++ ....+ +++..+++|+|++..|+|..|+..+.+
T Consensus        28 ~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   28 LYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            34456778889999999999999 54554 568899999999999999999998875

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=95.99  E-value=0.047  Score=45.45  Aligned_cols=76  Identities=13%  Similarity=0.105  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +.+...-..++.+++|+.|+-..+|.+...+ +++--+.+|.+++..|+|..|...+++. .....+...+++.|+|+
T Consensus        23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~  100 (899)
T TIGR02917        23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY  100 (899)
T ss_pred             HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHH
Confidence            3345556667778888888888888888776 6777788888888888888888877652 11223344455555554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=95.51  E-value=0.082  Score=35.43  Aligned_cols=55  Identities=25%  Similarity=0.247  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ..+..-+..+++|+.|+-+.++++.+.+ +++..+.+|.|++..|++.+|...+++
T Consensus        55 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  110 (135)
T TIGR02552        55 LGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDL  110 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3445556678899999999999998887 677889999999999999999998876

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=95.27  E-value=0.2  Score=34.70  Aligned_cols=59  Identities=10%  Similarity=-0.147  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ....-.+.+.+..++.|+.|+-+.++.+...+ ++.-.+.+|.+++..|++..|...+++
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~   90 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR   90 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34445556777778888888888888877765 455667788888888888888877765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=95.22  E-value=0.16  Score=35.83  Aligned_cols=71  Identities=8%  Similarity=-0.042  Sum_probs=45.6

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +-.-....+.|+.|+-..++++.+.+ +++..+.+|.++...|+|..|....++. .+...++.-.+-.|.|+
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l  102 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCL  102 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            44555667777777777777777776 5566677777777777777777766653 33344445455555544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.12  E-value=0.029  Score=49.68  Aligned_cols=78  Identities=13%  Similarity=0.163  Sum_probs=66.5

Q ss_pred             HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-----hhHHHh
Q 042077           32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-----FNEKYL  104 (109)
Q Consensus        32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-----~~~al~  104 (109)
                      ++.+.+|+.|.|.-.|.+.+.+ +.-=+..++..+.+.|+...|+.++.+. .++.+++.|||=-|+-+     |+|||.
T Consensus       499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~  578 (638)
T KOG1126|consen  499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQ  578 (638)
T ss_pred             eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHH
Confidence            6789999999999999998876 4556667789999999999999999875 67889999999888754     689999


Q ss_pred             hhhcC
Q 042077          105 EIELL  109 (109)
Q Consensus       105 ~~~~~  109 (109)
                      |.|-|
T Consensus       579 ~LEeL  583 (638)
T KOG1126|consen  579 ELEEL  583 (638)
T ss_pred             HHHHH
Confidence            88753

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=94.84  E-value=0.19  Score=36.98  Aligned_cols=80  Identities=18%  Similarity=0.257  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cc---hhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChh---hHH
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DP---TGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLR---FRY   92 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~---~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~---crY   92 (109)
                      ..+.+-.....++..++|+.|+-.-+++....+ +|   +-.+.+|.+|+..|++..|...+++- ...+.++.   ..|
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            455666777788899999999999999999886 44   34589999999999999999988762 11223333   567


Q ss_pred             HHhhcchh
Q 042077           93 LAEQKNFN  100 (109)
Q Consensus        93 LaA~c~~~  100 (109)
                      ..+.|+++
T Consensus       112 ~~g~~~~~  119 (235)
T TIGR03302       112 LRGLSNYN  119 (235)
T ss_pred             HHHHHHHH
Confidence            77777764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=94.77  E-value=0.088  Score=37.15  Aligned_cols=68  Identities=16%  Similarity=0.169  Sum_probs=53.1

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhh
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQ   96 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~   96 (109)
                      -.-+...++|+.|+.+-++.+.+.+ +++-.+-+|.|+...|++..|...+++. .+...++.-..+.+.
T Consensus        65 g~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~  134 (144)
T PRK15359         65 AGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN  134 (144)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            3346778999999999999999997 7889999999999999999999988763 223344444444443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.75  E-value=0.3  Score=33.63  Aligned_cols=60  Identities=15%  Similarity=0.174  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      -++-++.++..++..+.|+.|+-++++++.+.| +..-...|-.+|...|++..|...-++
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~  121 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER  121 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            466777788888899999999999999999999 556777889999999999999887664

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=94.65  E-value=0.17  Score=40.94  Aligned_cols=82  Identities=10%  Similarity=0.032  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc---
Q 042077           24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN---   98 (109)
Q Consensus        24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~---   98 (109)
                      .|..--..+...+.|+.|+-..++.+.+.+ ++.-.+.+|.||+..|+|..|+..+++. .+...++...+..|.++   
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            456667788889999999999999999997 6777888999999999999999988774 44456666777677665   


Q ss_pred             --hhHHHhh
Q 042077           99 --FNEKYLE  105 (109)
Q Consensus        99 --~~~al~~  105 (109)
                        |++|+..
T Consensus        84 g~~~eA~~~   92 (356)
T PLN03088         84 EEYQTAKAA   92 (356)
T ss_pred             CCHHHHHHH
Confidence              4555443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=94.40  E-value=0.42  Score=35.62  Aligned_cols=69  Identities=9%  Similarity=0.104  Sum_probs=55.9

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHH-hhcCC--hHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQAL-FLGRH--YRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~-y~~gq--y~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      .-++..+.|++|+-.-+|.+.+.+ +++-.+.+|+++ +..|+  +..|..++++. .+...++..+++.|..+
T Consensus        81 ~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~  154 (198)
T PRK10370         81 EYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDA  154 (198)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            357899999999999999999998 677888889996 68788  58999988873 44566777778777654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=93.65  E-value=0.46  Score=32.86  Aligned_cols=70  Identities=10%  Similarity=0.106  Sum_probs=50.7

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ..-+...++++.|+-+.++.+...+ ++...+.+|.+++..|++.+|...+++. .+...++....+.+.+.
T Consensus       142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  213 (234)
T TIGR02521       142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIA  213 (234)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3445677899999999999988876 5667888999999999999999888763 21233444444455443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=93.62  E-value=0.74  Score=36.23  Aligned_cols=76  Identities=11%  Similarity=0.021  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcCC----chhHHHHHHHHhhcCChHHHHHHHhc----CCCCCCChhhHHHH
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTND----PTGVYMQAQALFLGRHYRRPFHLLNA----SKIVPRDLRFRYLA   94 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~----~~dv~lLAq~~y~~gqy~RA~~LL~~----~~L~~~~~~crYLa   94 (109)
                      .-+...+.-.+.++.|+.|+-.-++++..-++    |+..||||++||..|+|..|....++    ++-..+.+...|-.
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            33555555556679999999999999998873    57999999999999999999987654    33223445555555


Q ss_pred             hhcc
Q 042077           95 EQKN   98 (109)
Q Consensus        95 A~c~   98 (109)
                      |.|+
T Consensus       224 g~~~  227 (263)
T PRK10803        224 GVIM  227 (263)
T ss_pred             HHHH
Confidence            6655

>PRK12370 invasion protein regulator; Provisional

Probab=93.54  E-value=0.28  Score=41.66  Aligned_cols=49  Identities=12%  Similarity=0.177  Sum_probs=41.0

Q ss_pred             HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..++.++.|+-..+|.+.+.+ ++...+.+|.+++..|++.+|...+++
T Consensus       348 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~  397 (553)
T PRK12370        348 NTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE  397 (553)
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3567889999999999999887 566778889999999999999888876

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=93.53  E-value=0.84  Score=38.95  Aligned_cols=84  Identities=13%  Similarity=0.060  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-   98 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-   98 (109)
                      ....++..-..+...+.|+.|+-.=+|.+.+.+++..-+-+|.||+..|+|..|+..+++. .+...+..+.+-.|.++ 
T Consensus       126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            4566778888899999999999999999999888777777999999999999999987763 33445666666666554 


Q ss_pred             ----hhHHHh
Q 042077           99 ----FNEKYL  104 (109)
Q Consensus        99 ----~~~al~  104 (109)
                          |++|+.
T Consensus       206 ~lg~~~eA~~  215 (615)
T TIGR00990       206 GLGKYADALL  215 (615)
T ss_pred             HcCCHHHHHH
Confidence                566643

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.40  E-value=0.17  Score=28.84  Aligned_cols=42  Identities=19%  Similarity=0.062  Sum_probs=28.7

Q ss_pred             chhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhh
Q 042077           55 PTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQ   96 (109)
Q Consensus        55 ~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~   96 (109)
                      |+-.+.||.+|...|++.+|..++++- .+...++.-++..|+
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456778999999999999999988763 223445554444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=93.30  E-value=0.5  Score=35.03  Aligned_cols=79  Identities=16%  Similarity=0.185  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC----CchhHHHHHHHHhhcCChHHHHHHHhc----CCCCCCChhhHHHH
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN----DPTGVYMQAQALFLGRHYRRPFHLLNA----SKIVPRDLRFRYLA   94 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~----~~~dv~lLAq~~y~~gqy~RA~~LL~~----~~L~~~~~~crYLa   94 (109)
                      +.+=..-...+.++.|..|+=.=+++..--+    .++..+++|.++|..|+|..|...+++    ++=...-+-..|+.
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~   85 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML   85 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence            4455566778899999999999999998765    256999999999999999999987665    33223334578999


Q ss_pred             hhcchhH
Q 042077           95 EQKNFNE  101 (109)
Q Consensus        95 A~c~~~~  101 (109)
                      |.|.|+.
T Consensus        86 g~~~~~~   92 (203)
T PF13525_consen   86 GLSYYKQ   92 (203)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988764

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=93.28  E-value=0.97  Score=34.89  Aligned_cols=75  Identities=8%  Similarity=-0.026  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHhhcCCc----hhHHHHHHHHhhcCChHHHHHHHhc----CCCCCCChhhHHHHh
Q 042077           24 KLRGLVRDCVSKHLYSSAIFFADKIAALTNDP----TGVYMQAQALFLGRHYRRPFHLLNA----SKIVPRDLRFRYLAE   95 (109)
Q Consensus        24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~----~dv~lLAq~~y~~gqy~RA~~LL~~----~~L~~~~~~crYLaA   95 (109)
                      .+=......+.++.|+.|+=.=+++....+++    ...+|+|.++|..|+|..|....++    ++=...-+-..|+.|
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g  113 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG  113 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence            34445566788999999999999999988743    3559999999999999999986654    332344566789999


Q ss_pred             hcc
Q 042077           96 QKN   98 (109)
Q Consensus        96 ~c~   98 (109)
                      .|.
T Consensus       114 ~~~  116 (243)
T PRK10866        114 LTN  116 (243)
T ss_pred             Hhh
Confidence            885

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=93.18  E-value=0.36  Score=40.41  Aligned_cols=61  Identities=21%  Similarity=0.184  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcCCC
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNASKI   83 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L   83 (109)
                      +-|-....-+++++.|+.|+=.|.|.+.+++ +-+.-+.||+||-..|+|..|+..|.+.+.
T Consensus       235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  235 ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            4455667778899999999999999999998 667999999999999999999999998653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=92.88  E-value=0.76  Score=29.35  Aligned_cols=75  Identities=13%  Similarity=0.034  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcCC----chhHHHHHHHHhhcCChHHHHHHHhcC-CCCCC---ChhhHHHHhh
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTND----PTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPR---DLRFRYLAEQ   96 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~----~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~---~~~crYLaA~   96 (109)
                      +-......+.++.|+.|+=.-+++....++    ++..+++|.+++..|+|..|...+++- .+...   .+...+..|.
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            345566677789999998888888877653    357889999999999999999988752 11122   2445677776


Q ss_pred             cch
Q 042077           97 KNF   99 (109)
Q Consensus        97 c~~   99 (109)
                      ++.
T Consensus        85 ~~~   87 (119)
T TIGR02795        85 SLQ   87 (119)
T ss_pred             HHH
Confidence            653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.47  E-value=0.18  Score=26.24  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=21.1

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           56 TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        56 ~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +-.+.+|.+++..|+|..|...+++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~   26 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEK   26 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4568999999999999999998875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=92.29  E-value=0.83  Score=38.11  Aligned_cols=50  Identities=6%  Similarity=0.103  Sum_probs=27.7

Q ss_pred             HHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           31 DCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        31 ~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      -.+..+.|+.|+-+.++++...+ ++...+.+|.+++..|++..|...+++
T Consensus       168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  218 (899)
T TIGR02917       168 LALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK  218 (899)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34455556666666666555544 344555555666666666666555543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=92.14  E-value=1.9  Score=33.26  Aligned_cols=53  Identities=15%  Similarity=0.096  Sum_probs=46.1

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS   81 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~   81 (109)
                      -.-.+.++.++.|+=.+++.+.+.+ ++.-.+.+|.+++..|++..|...+++.
T Consensus       121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~  174 (355)
T cd05804         121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESW  174 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            3455778999999999999999987 5677889999999999999999998763

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=92.01  E-value=1.3  Score=31.22  Aligned_cols=59  Identities=12%  Similarity=-0.060  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCch----hHHHHHHHHhhcCChHHHHHHHhc
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPT----GVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~----dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ...+-.+..-+..++.|+.|+-+.++.+.+.+++.    ..+-+|.++...|++..|...+++
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~   97 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ   97 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44455667778889999999999999999876543    467889999999999999998876

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=91.69  E-value=0.87  Score=25.96  Aligned_cols=53  Identities=15%  Similarity=0.140  Sum_probs=43.5

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..-+..++.++.|+-+-++.+.+.+ ++.-.+.+|.+++..|++..|...+.+
T Consensus        40 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   93 (100)
T cd00189          40 LAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEK   93 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            34445566889999999999988876 556778999999999999999988765

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=91.42  E-value=1.1  Score=28.53  Aligned_cols=53  Identities=11%  Similarity=-0.017  Sum_probs=45.2

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcCC----chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTND----PTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~~----~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..-+...+.|+.|+.+-+++....++    +...+.+|.++...|++..|...+++
T Consensus        45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  101 (119)
T TIGR02795        45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQ  101 (119)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            455567789999999999999988753    45788999999999999999998875

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=91.38  E-value=1.5  Score=39.28  Aligned_cols=75  Identities=5%  Similarity=-0.133  Sum_probs=57.9

Q ss_pred             HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-----hhHHHh
Q 042077           32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-----FNEKYL  104 (109)
Q Consensus        32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-----~~~al~  104 (109)
                      -...|.|+.|.||=++++.+.+ +......+|+++.+.+++..|...+++. .....+....++.|.|+     |++|.+
T Consensus        96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~  175 (694)
T PRK15179         96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADA  175 (694)
T ss_pred             HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHH
Confidence            3457899999999999999998 4567888999999999999998877763 22456777888888876     566655


Q ss_pred             hh
Q 042077          105 EI  106 (109)
Q Consensus       105 ~~  106 (109)
                      ..
T Consensus       176 ~y  177 (694)
T PRK15179        176 CF  177 (694)
T ss_pred             HH
Confidence            43

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.28  E-value=0.22  Score=25.70  Aligned_cols=24  Identities=13%  Similarity=0.292  Sum_probs=21.8

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHhc
Q 042077           57 GVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        57 dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ..|.+|.|++..|++.+|...+++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~   25 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQR   25 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHH
Confidence            578999999999999999998875

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=91.04  E-value=3.8  Score=28.36  Aligned_cols=78  Identities=13%  Similarity=0.039  Sum_probs=50.9

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcCC----chhHHHHHHHHhhcCChHHHHHHHhcCCCCCCC----hhhHHHHhhcc---
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTND----PTGVYMQAQALFLGRHYRRPFHLLNASKIVPRD----LRFRYLAEQKN---   98 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~~----~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~----~~crYLaA~c~---   98 (109)
                      ...++.+.+..+.-..+++..-.++    +...+.+|++++..|++..|...++.---..+.    ...++-.|+++   
T Consensus        19 ~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~   98 (145)
T PF09976_consen   19 LQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ   98 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence            3344688888888788888887653    246777889999999999998888762111111    23444445554   


Q ss_pred             --hhHHHhhhh
Q 042077           99 --FNEKYLEIE  107 (109)
Q Consensus        99 --~~~al~~~~  107 (109)
                        |++|+..++
T Consensus        99 ~~~d~Al~~L~  109 (145)
T PF09976_consen   99 GQYDEALATLQ  109 (145)
T ss_pred             CCHHHHHHHHH
Confidence              667766553

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=91.02  E-value=1.6  Score=37.18  Aligned_cols=46  Identities=22%  Similarity=0.098  Sum_probs=20.1

Q ss_pred             HhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077           34 SKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLN   79 (109)
Q Consensus        34 ~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~   79 (109)
                      ..+.|+.|+-.-++++.+.+ +++-.+.+|++++..|+|..|...++
T Consensus       377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  423 (615)
T TIGR00990       377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ  423 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            33444444444444444433 33344444444444444444444443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=90.69  E-value=0.42  Score=28.44  Aligned_cols=41  Identities=22%  Similarity=0.344  Sum_probs=32.4

Q ss_pred             HHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077           59 YMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF   99 (109)
Q Consensus        59 ~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~   99 (109)
                      |-+|..++..|+|..|...++.- .....++..++..|.|++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~   42 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY   42 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            56899999999999999988762 223557778888888874

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=90.51  E-value=0.55  Score=35.73  Aligned_cols=54  Identities=17%  Similarity=0.111  Sum_probs=24.0

Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHhhc-CCchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           27 GLVRDCVSKHLYSSAIFFADKIAALT-NDPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        27 ~~v~~~L~~h~Y~tAiF~ADKl~als-~~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .++|-.++.+.++.|.-.-+++..-. ++|.-...||.+++..|++..|+..+++
T Consensus       185 ~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~  239 (280)
T PF13429_consen  185 ALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK  239 (280)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence            34444444555554444444443333 2333334445555555555555554443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=90.45  E-value=2  Score=31.96  Aligned_cols=83  Identities=6%  Similarity=0.050  Sum_probs=62.6

Q ss_pred             hhh-HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHH
Q 042077           16 NEK-KEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRY   92 (109)
Q Consensus        16 ~~~-~~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crY   92 (109)
                      +++ ++.++.+-++--....++.|++|.=+-.-+.-+.+ +++-.|=||-|+-+.|+|..|+..-.+. .|...++..-+
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            344 56678888888888889999998877777777776 6777888888999999999888876653 34456666666


Q ss_pred             HHhhcc
Q 042077           93 LAEQKN   98 (109)
Q Consensus        93 LaA~c~   98 (109)
                      =+|.|+
T Consensus       108 ~ag~c~  113 (157)
T PRK15363        108 AAAECY  113 (157)
T ss_pred             HHHHHH
Confidence            666665

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=90.07  E-value=0.49  Score=25.95  Aligned_cols=30  Identities=13%  Similarity=0.130  Sum_probs=25.6

Q ss_pred             HHHHhhcC-CchhHHHHHHHHhhcCChHHHH
Q 042077           46 DKIAALTN-DPTGVYMQAQALFLGRHYRRPF   75 (109)
Q Consensus        46 DKl~als~-~~~dv~lLAq~~y~~gqy~RA~   75 (109)
                      .|.+.+.| +++.-+.||.+|...|++..|.
T Consensus         3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            46677776 7889999999999999999885

>PRK15331 chaperone protein SicA; Provisional

Probab=90.00  E-value=1.2  Score=33.47  Aligned_cols=85  Identities=13%  Similarity=0.167  Sum_probs=60.9

Q ss_pred             chhhhHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhH
Q 042077           14 FHNEKKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFR   91 (109)
Q Consensus        14 ~~~~~~~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~cr   91 (109)
                      .+.++++..+.+-..-.+.-.++.|+.|.=+---|..... +++-.+=||-|+-..|+|..|+.+-.-. .+...+|.--
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            4556677888888888999999999998766555666665 7777777888999999999988754332 2223455555


Q ss_pred             HHHhhcc
Q 042077           92 YLAEQKN   98 (109)
Q Consensus        92 YLaA~c~   98 (109)
                      |-+|+|+
T Consensus       109 f~agqC~  115 (165)
T PRK15331        109 FFTGQCQ  115 (165)
T ss_pred             chHHHHH
Confidence            6666665

>PRK12370 invasion protein regulator; Provisional

Probab=89.91  E-value=0.79  Score=38.97  Aligned_cols=71  Identities=15%  Similarity=0.121  Sum_probs=53.2

Q ss_pred             CchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-----hhHHHhhhh
Q 042077           37 LYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-----FNEKYLEIE  107 (109)
Q Consensus        37 ~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-----~~~al~~~~  107 (109)
                      .++.|+=.++|.+.+.+ +++....+|.++...|++..|...+++. .+...++...+..|.++     +++|...++
T Consensus       319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47889999999999987 6667778999999999999999998773 33455555556555544     556665543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=89.32  E-value=2.6  Score=36.87  Aligned_cols=65  Identities=15%  Similarity=0.044  Sum_probs=39.0

Q ss_pred             HHhCCchh----HHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077           33 VSKHLYSS----AIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK   97 (109)
Q Consensus        33 L~~h~Y~t----AiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c   97 (109)
                      ..++.++.    |+-+.+|++.+.+ ++.-...+|.++...|++..|...+++. .+...++..++..|.+
T Consensus       257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~  327 (656)
T PRK15174        257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA  327 (656)
T ss_pred             HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45566664    6777777777765 4556667777777777777777766542 2223444444444443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=89.21  E-value=3.9  Score=31.89  Aligned_cols=52  Identities=12%  Similarity=-0.089  Sum_probs=34.8

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ..-+...+.++.|+-+.+++..+.+++..+..+|..+...|++..|..++++
T Consensus       256 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~  307 (389)
T PRK11788        256 MECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE  307 (389)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3444556677777777777766666555556677777777777777776654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=89.18  E-value=2.6  Score=39.08  Aligned_cols=81  Identities=15%  Similarity=0.030  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHh-----hc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAE-----QK   97 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA-----~c   97 (109)
                      ++.....++.++.++.|+-+-++.+.+.+ ++.-.+.+|.+|+..|++..|...+++- .+...++.-+|..+     .-
T Consensus       464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~  543 (1157)
T PRK11447        464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSD  543 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCC
Confidence            33445567789999999999999999987 6778899999999999999999988762 12233444334333     33


Q ss_pred             chhHHHhh
Q 042077           98 NFNEKYLE  105 (109)
Q Consensus        98 ~~~~al~~  105 (109)
                      .+++|+..
T Consensus       544 ~~~~Al~~  551 (1157)
T PRK11447        544 RDRAALAH  551 (1157)
T ss_pred             CHHHHHHH
Confidence            35555544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=88.49  E-value=2.1  Score=33.40  Aligned_cols=49  Identities=10%  Similarity=0.051  Sum_probs=30.6

Q ss_pred             HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ++.+++++.|+=+.++++...+ ++...+.+|.++...|++.+|...+++
T Consensus       190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  239 (389)
T PRK11788        190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALER  239 (389)
T ss_pred             HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3455666666666666666554 344556666666667777666666655

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=88.29  E-value=0.56  Score=28.29  Aligned_cols=39  Identities=15%  Similarity=0.264  Sum_probs=31.9

Q ss_pred             HHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077           61 QAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF   99 (109)
Q Consensus        61 LAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~   99 (109)
                      |++.|+..++|..|...+.+- .+.+.++...+..|.|++
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~   40 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF   40 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            578899999999999998874 445678888888888874

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=86.57  E-value=2.8  Score=36.28  Aligned_cols=77  Identities=16%  Similarity=0.105  Sum_probs=58.9

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHhhc--------ch
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQK--------NF   99 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~c--------~~   99 (109)
                      .+++--.++|+.|+-+-|+.+..|| .++--++-|.+|-..|++..|...+....  .-.+.=|||-.+|        .+
T Consensus       201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar--~LD~~DRyiNsK~aKy~LRa~~~  278 (517)
T PF12569_consen  201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAR--ELDLADRYINSKCAKYLLRAGRI  278 (517)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hCChhhHHHHHHHHHHHHHCCCH
Confidence            3444456789999999999999998 57777788999999999999999887643  2345667777766        36


Q ss_pred             hHHHhhhh
Q 042077          100 NEKYLEIE  107 (109)
Q Consensus       100 ~~al~~~~  107 (109)
                      ++|..++.
T Consensus       279 e~A~~~~~  286 (517)
T PF12569_consen  279 EEAEKTAS  286 (517)
T ss_pred             HHHHHHHH
Confidence            67766654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=86.41  E-value=3.9  Score=29.94  Aligned_cols=79  Identities=13%  Similarity=0.166  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC----CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChh---hHHHH
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN----DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLR---FRYLA   94 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~----~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~---crYLa   94 (109)
                      +.|-.--.+.|.++.|+.|+-.=++|-+=-+    .+..-.+|+-+||.+|+|.-|...+++. .|..+|+.   --|+.
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            4455566788999999999988888877654    4679999999999999999999988773 44455553   45666


Q ss_pred             hhcchhH
Q 042077           95 EQKNFNE  101 (109)
Q Consensus        95 A~c~~~~  101 (109)
                      |.+.|+.
T Consensus        91 gL~~~~~   97 (142)
T PF13512_consen   91 GLSYYEQ   97 (142)
T ss_pred             HHHHHHH
Confidence            7777654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=86.26  E-value=4.2  Score=36.07  Aligned_cols=50  Identities=8%  Similarity=0.028  Sum_probs=26.2

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .-.+..+.++.|+-..++++...+ +++ .+.+|.++...|++..|+..+++
T Consensus        91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~  141 (765)
T PRK10049         91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ  141 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence            334455555555555555555544 333 55555555555555555555543

>PRK11189 lipoprotein NlpI; Provisional

Probab=86.03  E-value=2.2  Score=33.28  Aligned_cols=51  Identities=18%  Similarity=0.094  Sum_probs=39.5

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcCC-chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTND-PTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~~-~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .-+...+.|+.|+=.-++.+.+.++ +...+.+|.+++..|+|..|...+++
T Consensus       106 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~  157 (296)
T PRK11189        106 IYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLA  157 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3456678888888888888888774 44557788888888888888887766

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=85.97  E-value=2.4  Score=37.90  Aligned_cols=47  Identities=2%  Similarity=-0.140  Sum_probs=43.9

Q ss_pred             HhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           34 SKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        34 ~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .++.++.|+.++++++...+ +++-.+.+|.++-..|+|..|..+.++
T Consensus       132 ~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~  179 (694)
T PRK15179        132 RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFER  179 (694)
T ss_pred             HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            48899999999999999997 788999999999999999999998877

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=85.84  E-value=5.9  Score=24.09  Aligned_cols=58  Identities=14%  Similarity=0.222  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhc---CC--c---hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALT---ND--P---TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als---~~--~---~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .-+..+-.-+..++.|+.|+=+-+|.+.+.   |+  |   ...+-+|.|+...|++..|...+++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            334555566678999999999999988773   22  1   2456789999999999999998875

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=85.25  E-value=0.61  Score=27.89  Aligned_cols=47  Identities=13%  Similarity=0.232  Sum_probs=35.9

Q ss_pred             CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcchh
Q 042077           54 DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNFN  100 (109)
Q Consensus        54 ~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~~  100 (109)
                      ++.-.+.+|.+++..|+|..|+..+++. .+...++...+-.|.|++.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~   49 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK   49 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3456678999999999999999988773 3345667777777777654

...

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=85.13  E-value=4.1  Score=35.63  Aligned_cols=59  Identities=5%  Similarity=0.004  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ..-+|..+...+.++.++.|+=..+.+++..+ +++..+.|+-+....|++..|...+++
T Consensus        42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~  101 (656)
T PRK15174         42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNK  101 (656)
T ss_pred             ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHH
Confidence            44455555555555555555555555555554 444555555555555555555555544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=84.72  E-value=4.8  Score=35.73  Aligned_cols=76  Identities=21%  Similarity=0.339  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCC-chhHHHHHHHHhhcCChHHHHHHHhc-CCCCCCChhh-HHHHhhc
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTND-PTGVYMQAQALFLGRHYRRPFHLLNA-SKIVPRDLRF-RYLAEQK   97 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~-~~dv~lLAq~~y~~gqy~RA~~LL~~-~~L~~~~~~c-rYLaA~c   97 (109)
                      ++-+.=+--.+++.+-++.||=+-||..-+-++ ..=-.+.|.|+-++|+|+||+.+-+. +.-....+-| ++|.--|
T Consensus       626 ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~  704 (840)
T KOG2003|consen  626 IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA  704 (840)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence            344444456789999999999999998777664 44567789999999999999998764 1113567788 5554333

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=84.46  E-value=11  Score=28.08  Aligned_cols=80  Identities=10%  Similarity=-0.087  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcCCCCC-CChhhHHHHhhc
Q 042077           20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNASKIVP-RDLRFRYLAEQK   97 (109)
Q Consensus        20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~-~~~~crYLaA~c   97 (109)
                      +.+--|...++-.+......++.=+=|-+-.+.+ .++=-..-+-.+...|+|.-|.+++++-.-.. .++.|+=|.|.|
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C   87 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC   87 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence            4566677788888888999999888888888887 55545556778899999999999999843222 348899999999


Q ss_pred             ch
Q 042077           98 NF   99 (109)
Q Consensus        98 ~~   99 (109)
                      ++
T Consensus        88 L~   89 (153)
T TIGR02561        88 LN   89 (153)
T ss_pred             HH
Confidence            85

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.36  E-value=2  Score=21.97  Aligned_cols=24  Identities=21%  Similarity=0.110  Sum_probs=20.9

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHh
Q 042077           56 TGVYMQAQALFLGRHYRRPFHLLN   79 (109)
Q Consensus        56 ~dv~lLAq~~y~~gqy~RA~~LL~   79 (109)
                      .-.+.||.+++..|++..|..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            456889999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=84.32  E-value=2.5  Score=34.36  Aligned_cols=51  Identities=18%  Similarity=0.192  Sum_probs=41.7

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLN   79 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~   79 (109)
                      .+-++.+++|+.|+=..+++....+ +|.-..+++++|...|++..|..++.
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~  211 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILP  211 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            5677888888888888888888887 67788888888888888888885544

>TIGR00540 hemY_coli hemY protein

Probab=83.86  E-value=3.5  Score=33.56  Aligned_cols=53  Identities=9%  Similarity=0.090  Sum_probs=46.5

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ..+-.+.+++|+.|.=..+++....| +|.-..++++++...|++..|..++.+
T Consensus       159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~  212 (409)
T TIGR00540       159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDN  212 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            46677889999999999999999987 677888999999999999988887765

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK11189 lipoprotein NlpI; Provisional

Probab=83.74  E-value=5.5  Score=31.08  Aligned_cols=74  Identities=9%  Similarity=-0.046  Sum_probs=51.9

Q ss_pred             HHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc-----chhHHHhh
Q 042077           33 VSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK-----NFNEKYLE  105 (109)
Q Consensus        33 L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c-----~~~~al~~  105 (109)
                      ...+.++.|+-.-++.+.+.+ ++.--+.+|.++...|+|..|...+++. .+...+..-.+-.|.+     .+++|+..
T Consensus        75 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~  154 (296)
T PRK11189         75 DSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD  154 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            456888899988899999887 6778889999999999999999987663 2233333333333333     35555543


Q ss_pred             h
Q 042077          106 I  106 (109)
Q Consensus       106 ~  106 (109)
                      .
T Consensus       155 ~  155 (296)
T PRK11189        155 L  155 (296)
T ss_pred             H
Confidence            3

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=83.32  E-value=9.6  Score=33.84  Aligned_cols=79  Identities=13%  Similarity=0.008  Sum_probs=60.2

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc-----chh
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK-----NFN  100 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c-----~~~  100 (109)
                      ...-.+..+.++.|+-..++++...+ +++-.+.+|.++...|++.+|...+++. .+.+.++.-++..|..     .|+
T Consensus       365 ~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~  444 (765)
T PRK10049        365 LSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWR  444 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHH
Confidence            44455678999999999999999887 7788899999999999999999999874 3345566666655543     355


Q ss_pred             HHHhhh
Q 042077          101 EKYLEI  106 (109)
Q Consensus       101 ~al~~~  106 (109)
                      +|...+
T Consensus       445 ~A~~~~  450 (765)
T PRK10049        445 QMDVLT  450 (765)
T ss_pred             HHHHHH
Confidence            555444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=83.31  E-value=3.9  Score=30.39  Aligned_cols=43  Identities=21%  Similarity=0.282  Sum_probs=39.9

Q ss_pred             chhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           38 YSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        38 Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ++.|+-+-++++...+ ++.-.+.||.+++..|+|..|....++
T Consensus       126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~  169 (198)
T PRK10370        126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK  169 (198)
T ss_pred             cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6899999999999997 788999999999999999999998876

>smart00028 TPR Tetratricopeptide repeats

Probab=83.25  E-value=1.8  Score=20.12  Aligned_cols=25  Identities=12%  Similarity=0.212  Sum_probs=21.4

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           56 TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        56 ~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+.+|.+++..|++..|...++.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~   26 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEK   26 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            4567899999999999999987765

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=83.20  E-value=3.7  Score=32.31  Aligned_cols=51  Identities=4%  Similarity=-0.023  Sum_probs=43.1

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcC----CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTN----DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~----~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .-+..++.|+.|+....+++..-+    .++..+.+|.++...|++..|...+++
T Consensus       188 ~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~  242 (263)
T PRK10803        188 QLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQ  242 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            345778899999999999998765    366788899999999999999998875

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=83.17  E-value=3.1  Score=30.94  Aligned_cols=47  Identities=15%  Similarity=0.240  Sum_probs=42.0

Q ss_pred             HhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           34 SKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        34 ~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .++.|+.||..=.+...+.+ +|.-.|-+|+|++..|+..-|..-++.
T Consensus        81 ~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~  128 (157)
T PRK15363         81 AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKA  128 (157)
T ss_pred             HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            46789999999999999996 899999999999999999988876664

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.27  E-value=1.3  Score=35.45  Aligned_cols=55  Identities=15%  Similarity=0.146  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC----CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN----DPTGVYMQAQALFLGRHYRRPFHLLN   79 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~----~~~dv~lLAq~~y~~gqy~RA~~LL~   79 (109)
                      +-..--+.+..+.|..|.=---+-+.-=+    .|+.-|||++++|..|.|.+|....-
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~  202 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFA  202 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHH
Confidence            33333444445568887522222222112    58899999999999999999988554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=81.68  E-value=19  Score=26.90  Aligned_cols=82  Identities=12%  Similarity=0.026  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcCCC-CCCChhhHHHHhh
Q 042077           19 KEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNASKI-VPRDLRFRYLAEQ   96 (109)
Q Consensus        19 ~~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L-~~~~~~crYLaA~   96 (109)
                      ++.+.-|...+.-.+..+..+++.=+=+-+-.|.| .++=-..-|..+...|+|.-|..+|+.-.- ....+.|+=|.|.
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~   86 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL   86 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            45677788888888889988888888888888887 677667788999999999999999987210 1346789999999


Q ss_pred             cchh
Q 042077           97 KNFN  100 (109)
Q Consensus        97 c~~~  100 (109)
                      |++.
T Consensus        87 CL~~   90 (160)
T PF09613_consen   87 CLYA   90 (160)
T ss_pred             HHHH
Confidence            9853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-17

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 73.7 bits (181), Expect = 5e-17
 Identities = 20/75 (26%), Positives = 29/75 (38%)

Query: 22  IEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS 81
            + LR    D + +  Y  A F  +K+  +T +P   +  AQ       Y R   LL   
Sbjct: 84  EDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKE 143

Query: 82  KIVPRDLRFRYLAEQ 96
            +  R    RYLA  
Sbjct: 144 DLYNRSSACRYLAAF 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	99.23
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.79
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.48
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.47
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.39
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.35
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.33
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.3
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.3
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.28
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.26
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.22
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.19
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.18
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.16
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.93
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.88
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	96.87
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	96.86
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.73
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.7
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.7
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.66
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.66
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.64
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.55
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	96.54
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.54
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.53
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.52
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.52
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.5
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.49
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	96.49
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.49
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	96.44
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.39
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.39
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.39
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.34
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.32
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.31
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	96.28
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.26
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.23
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.19
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.18
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.16
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.05
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.0
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	95.99
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	95.96
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	95.96
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.92
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	95.89
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	95.85
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	95.84
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	95.79
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.78
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.77
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	95.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	95.75
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	95.69
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	95.68
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	95.67
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	95.64
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	95.64
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	95.61
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	95.61
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	95.6
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	95.58
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	95.54
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	95.53
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	95.52
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	95.48
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	95.48
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	95.43
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	95.39
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	95.36
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	95.34
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	95.32
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	95.29
3u4t_A	272	TPR repeat-containing protein; structural genomics	95.29
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	95.27
3u4t_A	272	TPR repeat-containing protein; structural genomics	95.24
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	95.23
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	95.22
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	95.2
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	95.08
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	94.99
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	94.96
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	94.86
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	94.75
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	94.61
2kat_A	115	Uncharacterized protein; NESG, structure, structur	94.56
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	94.53
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	94.48
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	94.44
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	94.39
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	94.39
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	94.26
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	94.2
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	94.16
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	94.13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	94.02
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	93.94
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.88
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	93.72
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	93.65
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	93.19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	93.13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	93.04
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	92.99
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	92.98
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	92.94
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	92.91
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	92.35
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	92.21
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	92.1
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	92.07
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	92.02
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	91.98
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	91.95
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	91.67
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	91.48
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	91.42
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	91.26
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	91.05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	90.97
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	90.77
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	89.94
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	88.99
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	88.98
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	88.39
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	88.38
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	88.38
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	88.25
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	88.23
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	88.22
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	87.99
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	87.9
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	87.88
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	87.55
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	87.52
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	86.75
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	86.61
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	85.66
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	85.45
2l6j_A	111	TPR repeat-containing protein associated with HSP;	85.33
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	85.26
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	85.1
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	84.74
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	84.53
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	83.95
1klx_A	138	Cysteine rich protein B; structural genomics, heli	83.81
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	83.76
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	83.7
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	83.23
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	82.3
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	82.17
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	81.56

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=99.23  E-value=8.7e-12  Score=92.09  Aligned_cols=83  Identities=17%  Similarity=0.253  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcCCch----------hHHHHHHHHhhcCChHHHHHHHhc----CCCCCCCh--
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTNDPT----------GVYMQAQALFLGRHYRRPFHLLNA----SKIVPRDL--   88 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~----------dv~lLAq~~y~~gqy~RA~~LL~~----~~L~~~~~--   88 (109)
                      |+.+|++.+++++|++|++.|++++++++++.          -.+++|+++|..|+|.||....++    .+.+.+..  
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            78899999999999999999999999997444          459999999999999999998876    33222221  


Q ss_pred             --------------------hhHHHHhhcc-----hhHHHhhhh
Q 042077           89 --------------------RFRYLAEQKN-----FNEKYLEIE  107 (109)
Q Consensus        89 --------------------~crYLaA~c~-----~~~al~~~~  107 (109)
                                          -+||..|.|+     +++|+.+.|
T Consensus       103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le  146 (167)
T 3ffl_A          103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD  146 (167)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence                                5999999997     678888765

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.79  E-value=0.00013  Score=57.07  Aligned_cols=87  Identities=23%  Similarity=0.310  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHhhcc--
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKN--   98 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~c~--   98 (109)
                      .+..++.++..++.++.|+.|+-+.++++...+++.+.+.++.+++..|++.+|..++++......++...+..+.++  
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (597)
T 2xpi_A           83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK  162 (597)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence            467789999999999999999999999998888888999999999999999999999998644567788888877765  


Q ss_pred             ---hhHHHhhhh
Q 042077           99 ---FNEKYLEIE  107 (109)
Q Consensus        99 ---~~~al~~~~  107 (109)
                         +++|+...+
T Consensus       163 ~g~~~~A~~~~~  174 (597)
T 2xpi_A          163 LYDWQGALNLLG  174 (597)
T ss_dssp             TTCHHHHHHHHC
T ss_pred             HhhHHHHHHHHh
Confidence               566766544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.48  E-value=0.00076  Score=44.31  Aligned_cols=78  Identities=13%  Similarity=0.075  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ..+.+..+-..++.++.|+.|+=+.++++...+ ++.-.+.+|.|++..|+|..|...+++. .+.+.++...+..|.|+
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            345556666777889999999999999998887 6677788899999999999998877662 23345666666667665

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.47  E-value=0.00092  Score=42.42  Aligned_cols=77  Identities=16%  Similarity=0.064  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      .+.+...-..+..++.|+.|+=+-++.+.+.+ ++.-.+.+|.|++..|+|..|...+++. .+...++...+..|.|+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34566667778889999999999999999887 6677888999999999999999877653 23345666667777665

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.39  E-value=0.0009  Score=40.41  Aligned_cols=76  Identities=9%  Similarity=-0.040  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +.+......+...+.|+.|+-+-++.+...+ ++.-.+.+|.+++..|+|..|...+++. .+...++...+..|.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            4455666677778888888888888888776 5666777888888888888888777652 22234555555555554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.35  E-value=0.0015  Score=42.83  Aligned_cols=86  Identities=8%  Similarity=0.004  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077           20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK   97 (109)
Q Consensus        20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c   97 (109)
                      +..+..+..=..+..++.|+.|+-.-+|.+.+.+ ++.-.+.+|.||+..|++..|+..+++. .+...++...+..|.|
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~   90 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            4456667777788899999999999999999987 6777788999999999999999987763 3345667777777776


Q ss_pred             c-----hhHHHhh
Q 042077           98 N-----FNEKYLE  105 (109)
Q Consensus        98 ~-----~~~al~~  105 (109)
                      +     |++|...
T Consensus        91 ~~~~~~~~~A~~~  103 (126)
T 4gco_A           91 LVAMREWSKAQRA  103 (126)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHCCCHHHHHHH
Confidence            5     4555443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.33  E-value=0.0015  Score=43.54  Aligned_cols=78  Identities=14%  Similarity=0.099  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ..+.+..+-..+..++.|+.|+-+-++++.+.+ ++.-.+.+|.||+..|+|..|+..+++. .+...++...+..|.|+
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            345566777777888999999999999888886 6667788899999999999988877653 23345566666666655

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.30  E-value=0.0023  Score=39.08  Aligned_cols=78  Identities=15%  Similarity=0.051  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ....+..+...+...+.|+.|+-+.++++...+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            345566667777788889999998888888876 5667778888999999998888877652 22234555666666554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.30  E-value=0.0022  Score=41.36  Aligned_cols=78  Identities=15%  Similarity=0.136  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ..+.+...-..+...+.|+.|+-+.++++.+.+ ++.-.+.+|.+++..|+|..|...+++. .+...++...+..|.++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            455566667777788888888888888888776 5667777888888888888888776652 22234555555555554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.28  E-value=0.0012  Score=40.97  Aligned_cols=78  Identities=9%  Similarity=-0.013  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ....+..+...+...+.|+.|+-+-++++...+ ++.-.+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            345677777888889999999999999998886 6678888999999999999999887652 22344566666666654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.26  E-value=0.002  Score=40.80  Aligned_cols=76  Identities=7%  Similarity=-0.004  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +.+...-..+...+.|+.|+-+-++++.+.+ ++.-.+.+|.|++..|+|..|...+++. .+...++...+..|.|+
T Consensus        10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B           10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            4456667778889999999999999999987 5677888999999999999999877653 23345677777777765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.22  E-value=0.0021  Score=40.26  Aligned_cols=71  Identities=10%  Similarity=0.064  Sum_probs=47.4

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcC-Cc---hhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCC---hhhHHHHhhcc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTN-DP---TGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRD---LRFRYLAEQKN   98 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~---~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~---~~crYLaA~c~   98 (109)
                      .-..++..+.|+.|+-.-++++...+ ++   +..+.+|.+++..|+|..|...+++. ...+.+   +...+..|.|+
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence            34455667888888888888887776 44   46777888888888888887766542 112333   45566666665

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.19  E-value=0.0026  Score=42.70  Aligned_cols=79  Identities=15%  Similarity=0.131  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077           20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK   97 (109)
Q Consensus        20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c   97 (109)
                      +..+.+..+-..+..++.|+.|+=.-++++.+.+ ++.-.+.+|.|++..|+|..|+..+++. .+...++...|-.|.|
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   98 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            3445566667778889999999999999998887 6677788999999999999999877763 2334566666666666


Q ss_pred             c
Q 042077           98 N   98 (109)
Q Consensus        98 ~   98 (109)
                      +
T Consensus        99 ~   99 (148)
T 2vgx_A           99 L   99 (148)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.0038  Score=37.88  Aligned_cols=76  Identities=18%  Similarity=0.280  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCC------hhhHHHH
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRD------LRFRYLA   94 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~------~~crYLa   94 (109)
                      +.+..+-..+...+.|+.|+=+.++.+.+.+ ++.-.+.+|.|++..|+|..|...+++. .+...+      ....+..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~   84 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL   84 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence            3455566777889999999999999999987 6778889999999999999999988763 333444      4455555


Q ss_pred             hhcc
Q 042077           95 EQKN   98 (109)
Q Consensus        95 A~c~   98 (109)
                      +.++
T Consensus        85 ~~~~   88 (111)
T 2l6j_A           85 ELAQ   88 (111)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.16  E-value=0.0024  Score=43.98  Aligned_cols=79  Identities=10%  Similarity=0.079  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077           20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK   97 (109)
Q Consensus        20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c   97 (109)
                      +..+-+..+-..+..++.|+.|+=+-+|++.+.+ ++.-.+.||.|++..|+|..|+...++. .+.+.++...|-.|.|
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~  113 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence            3456667777788899999999999999999997 6777888999999999999999988763 3445677777777777


Q ss_pred             c
Q 042077           98 N   98 (109)
Q Consensus        98 ~   98 (109)
                      +
T Consensus       114 ~  114 (151)
T 3gyz_A          114 Q  114 (151)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.08  E-value=0.0032  Score=39.81  Aligned_cols=77  Identities=14%  Similarity=0.042  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCC----chhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhh
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTND----PTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQ   96 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~----~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~   96 (109)
                      .+.+......+..++.|+.|+=+-++++.+.++    +.-.+.+|.+++..|+|..|...+++. .+...++...+..|.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            456777788889999999999999999998875    456778999999999999999887652 223456667777776


Q ss_pred             cc
Q 042077           97 KN   98 (109)
Q Consensus        97 c~   98 (109)
                      |+
T Consensus       108 ~~  109 (148)
T 2dba_A          108 AL  109 (148)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.05  E-value=0.0031  Score=40.97  Aligned_cols=71  Identities=7%  Similarity=-0.053  Sum_probs=58.6

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      .-..++..+.++.|+=..++++.+.+ +++-.+.+|.++...|++..|...+++. .+...++...+..|.++
T Consensus        23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~   95 (121)
T 1hxi_A           23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   95 (121)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            44556779999999999999999997 7778899999999999999999988763 33456677777777766

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=96.93  E-value=0.0035  Score=38.38  Aligned_cols=58  Identities=24%  Similarity=0.195  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +.+..+-.-+...+.|+.|+-+-++.+...+ ++.-.+.+|.+++..|+|..|...+++
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~   63 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK   63 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            4456666778889999999999999999886 566778899999999999999988775

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.88  E-value=0.0081  Score=35.16  Aligned_cols=76  Identities=14%  Similarity=0.182  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      .-+..+-.-+...+.|+.|+-+.++.+.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3445556667889999999999999999987 6778889999999999999999988763 22234444444444443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=96.87  E-value=0.0023  Score=44.76  Aligned_cols=68  Identities=7%  Similarity=0.098  Sum_probs=36.7

Q ss_pred             HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077           32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF   99 (109)
Q Consensus        32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~   99 (109)
                      +...+.|+.|+=+-+|.+.+.+ +++-.+.+|.+++..|++..|...+++. .+.+.++...+-.|.+++
T Consensus        64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3455566666666666666554 4445555666666666666666555442 222344455555555544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=96.86  E-value=0.0081  Score=41.04  Aligned_cols=78  Identities=12%  Similarity=0.046  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cc----------------hhHHHHHHHHhhcCChHHHHHHHhcC-C
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DP----------------TGVYMQAQALFLGRHYRRPFHLLNAS-K   82 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~----------------~dv~lLAq~~y~~gqy~RA~~LL~~~-~   82 (109)
                      ..+.++..-..+..++.|+.|+=+-++.+.+.+ ++                .-.+.+|.|++..|+|..|...+++. .
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  116 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK  116 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            456677777788889999999999999888876 44                55677899999999999998877652 2


Q ss_pred             CCCCChhhHHHHhhcc
Q 042077           83 IVPRDLRFRYLAEQKN   98 (109)
Q Consensus        83 L~~~~~~crYLaA~c~   98 (109)
                      +...++...+..|.++
T Consensus       117 ~~p~~~~~~~~lg~~~  132 (198)
T 2fbn_A          117 IDKNNVKALYKLGVAN  132 (198)
T ss_dssp             HSTTCHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHH
Confidence            2345666667777665

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.73  E-value=0.0051  Score=36.73  Aligned_cols=71  Identities=13%  Similarity=0.065  Sum_probs=51.9

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCC--ChhhHHHHhhcc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPR--DLRFRYLAEQKN   98 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~--~~~crYLaA~c~   98 (109)
                      +..-+..++.|+.|+-+.+|++.+.+ ++.-.+.+|.+++..|+|..|...+++. .+...  +....+..|.|+
T Consensus        12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A           12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            34445678899999999999998886 5667788999999999999999887653 22234  555555555543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.70  E-value=0.01  Score=37.50  Aligned_cols=84  Identities=17%  Similarity=0.011  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCCh-hhHHHHhhcc
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDL-RFRYLAEQKN   98 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~-~crYLaA~c~   98 (109)
                      ..-+..+-.-+...+.|+.|+=+.+|++.+.+ ++.-.+.+|.|++..|++..|...+++. .+...++ .-.|..|...
T Consensus        27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~  106 (117)
T 3k9i_A           27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF  106 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34455566667889999999999999999987 6788899999999999999999987752 1112222 2345555555


Q ss_pred             hhHHHhh
Q 042077           99 FNEKYLE  105 (109)
Q Consensus        99 ~~~al~~  105 (109)
                      |.+++++
T Consensus       107 ~~~~l~~  113 (117)
T 3k9i_A          107 YADKLDE  113 (117)
T ss_dssp             HTTCTTC
T ss_pred             HHHHHHH
Confidence            6555554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.70  E-value=0.0078  Score=45.50  Aligned_cols=85  Identities=12%  Similarity=0.128  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-   98 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-   98 (109)
                      ..+.+...-..++.++.|+.|+-+-++++...+++...+.+|.|++..|+|..|...+++. .+.+.++...+..|.++ 
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            4566777778888899999999999999999888888888999999999999999988752 23345666667766664 


Q ss_pred             ----hhHHHhh
Q 042077           99 ----FNEKYLE  105 (109)
Q Consensus        99 ----~~~al~~  105 (109)
                          +++|...
T Consensus        85 ~~g~~~~A~~~   95 (514)
T 2gw1_A           85 GLGKFADAMFD   95 (514)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HHhhHHHHHHH
Confidence                5555543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.66  E-value=0.017  Score=34.80  Aligned_cols=75  Identities=15%  Similarity=0.181  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      -+..+..-+...+.|+.|+=+.++++...+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            344555667778888888888888887765 4556677888888888888888777652 11223444444444443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.66  E-value=0.0039  Score=41.72  Aligned_cols=71  Identities=10%  Similarity=0.063  Sum_probs=57.2

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +-.-+...+.|+.|+-+-+|++.+.+ +++-.+.+|.||+..|++..|...+++. .+.+.++...+-.|.++
T Consensus        37 la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  109 (150)
T 4ga2_A           37 FAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELL  109 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34457789999999999999999997 7788899999999999999999988763 33455666666666654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.64  E-value=0.0059  Score=38.10  Aligned_cols=54  Identities=7%  Similarity=-0.001  Sum_probs=47.5

Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           27 GLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        27 ~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .+-.-++..+.|+.|+-+-+|++.+.+ ++.-.+.+|.+|+..|++..|...+++
T Consensus        12 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~   66 (100)
T 3ma5_A           12 ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ   66 (100)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            444556779999999999999999997 677889999999999999999998876

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.55  E-value=0.011  Score=36.01  Aligned_cols=74  Identities=7%  Similarity=-0.009  Sum_probs=57.5

Q ss_pred             HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077           26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF   99 (109)
Q Consensus        26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~   99 (109)
                      ..+..-+...+.|+.|+-+.++++.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..+.++.
T Consensus        50 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  125 (131)
T 2vyi_A           50 CNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL  125 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            3445556789999999999999999987 5778899999999999999999988763 223445666666666654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=96.54  E-value=0.0054  Score=40.13  Aligned_cols=70  Identities=13%  Similarity=0.042  Sum_probs=54.9

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK   97 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c   97 (109)
                      +-.-+...+.|+.|+-..+|++.+.+ ++...+.+|.||+..|+|..|...+++. .+.+.+...+.-.++|
T Consensus        53 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           53 RAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            34456678999999999999999987 6778889999999999999999988763 3334555555544544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.54  E-value=0.016  Score=38.31  Aligned_cols=58  Identities=7%  Similarity=-0.012  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .-+..+-.-++..+.|+.|+=++++++.+.+ ++...|.+|.+|+..|+|..|...+++
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~  122 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKL  122 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence            3344455567789999999999999999987 677889999999999999999998876

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.53  E-value=0.012  Score=41.96  Aligned_cols=76  Identities=11%  Similarity=-0.036  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +.+...-..++.++.|+.|+=..++++...+ ++...+.+|.+++..|++..|...+++. .+.+.++...+..|.++
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            4455666777888999999999999888886 6778888999999999999999887662 22344556666666655

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.52  E-value=0.0091  Score=36.08  Aligned_cols=52  Identities=6%  Similarity=0.132  Sum_probs=45.9

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-Cch-hHHHHHHHHhhcCChHHHHHHHhc
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPT-GVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~-dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ...++..+.|+.|+-..++++.+.+ ++. -.+.+|.+++..|++..|...+++
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~   60 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS   60 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3456779999999999999999987 667 788999999999999999998876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.52  E-value=0.0077  Score=39.88  Aligned_cols=85  Identities=11%  Similarity=-0.016  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhh------------------cC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAAL------------------TN-DPTGVYMQAQALFLGRHYRRPFHLLNAS   81 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~al------------------s~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~   81 (109)
                      ..+.++..=..+..++.|+.|+=.-++.+.+                  .+ .+.-.+-+|.||+..|+|..|+..+++.
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4667788888899999999999999999988                  21 1234567899999999999999977663


Q ss_pred             -CCCCCChhhHHHHhhcc-----hhHHHhh
Q 042077           82 -KIVPRDLRFRYLAEQKN-----FNEKYLE  105 (109)
Q Consensus        82 -~L~~~~~~crYLaA~c~-----~~~al~~  105 (109)
                       .+...++...|..|.|+     |++|...
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~  119 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEED  119 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHH
Confidence             33456777778888776     5555543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.50  E-value=0.029  Score=33.46  Aligned_cols=71  Identities=14%  Similarity=0.005  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHh
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAE   95 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA   95 (109)
                      +..+..-+...+.|+.|+-+.++++.+.+ ++.-.+.+|.+++..|++..|...+++. .+...++...+..+
T Consensus        41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  113 (118)
T 1elw_A           41 YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ  113 (118)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            44445566789999999999999999987 5778899999999999999999988763 33334444444333

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.49  E-value=0.018  Score=39.86  Aligned_cols=77  Identities=10%  Similarity=-0.095  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ..-+..+..-+...+.|+.|+-+.++++.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  121 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  121 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence            34455556667778888888888888888876 5667777888888888888888877652 22234455555555554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=96.49  E-value=0.007  Score=37.34  Aligned_cols=75  Identities=9%  Similarity=-0.035  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF   99 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~   99 (109)
                      +..+..-+...+.|+.|+-+.++++.+.+ ++.-.+.+|.+++..|++..|...+++. .+...+....+..+.+++
T Consensus        53 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  129 (133)
T 2lni_A           53 YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM  129 (133)
T ss_dssp             HHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            33444556778999999999999999987 6778899999999999999999988763 222344555566666554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.49  E-value=0.023  Score=34.31  Aligned_cols=73  Identities=16%  Similarity=0.196  Sum_probs=52.7

Q ss_pred             HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ..+..-+...+.++.|+-+.+++....+ ++.-.+.+|.+++..|++..|...+++. .....++...+..|.++
T Consensus        39 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  113 (136)
T 2fo7_A           39 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY  113 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            3445556778899999999999888876 4556778999999999999999887652 11234455555556554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=96.44  E-value=0.015  Score=40.12  Aligned_cols=74  Identities=15%  Similarity=0.041  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC--CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN--DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~--~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +...-..++.++.|+.|+=+-++++.+.+  ++...+.+|.|++..|+|..|...+++. .+.+.++...+..|.++
T Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A           10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            44455567788999999999999998884  5667888999999999999998877763 22344555555556554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.39  E-value=0.026  Score=41.49  Aligned_cols=76  Identities=7%  Similarity=-0.004  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +.+...-..+..++.|+.|+=..++++.+.+ ++.-.+.+|.||+..|+|..|...+++. .+...++...+..|.++
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3455666777889999999999999999987 6677788999999999999999988763 44456666767666654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.39  E-value=0.0019  Score=40.95  Aligned_cols=72  Identities=14%  Similarity=0.059  Sum_probs=52.0

Q ss_pred             HhCCchhHHHHHHHHHhhc---C-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-----hhHHH
Q 042077           34 SKHLYSSAIFFADKIAALT---N-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-----FNEKY  103 (109)
Q Consensus        34 ~~h~Y~tAiF~ADKl~als---~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-----~~~al  103 (109)
                      .++.|+.|+-+-+|++.+.   + ++.-.+.||.+|+..|+|..|...+++. .+.+.++...+..|.|+     +++|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            3578899999999999983   3 5567889999999999999999988763 23355677777778776     45555


Q ss_pred             hh
Q 042077          104 LE  105 (109)
Q Consensus       104 ~~  105 (109)
                      ..
T Consensus        82 ~~   83 (117)
T 3k9i_A           82 EL   83 (117)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.39  E-value=0.012  Score=38.99  Aligned_cols=56  Identities=11%  Similarity=-0.069  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+-.-++..+.|+.|+-+.+|++.+.+ ++.-.+.+|.+|+..|+|..|...+++
T Consensus        48 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  104 (164)
T 3sz7_A           48 LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEK  104 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            33445556789999999999999999997 677889999999999999999998876

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.34  E-value=0.022  Score=36.59  Aligned_cols=51  Identities=10%  Similarity=-0.043  Sum_probs=26.0

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLN   79 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~   79 (109)
                      ..-+...+.++.|+-+.++++...+ ++.-.+.+|.+++..|++..|...++
T Consensus        49 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  100 (186)
T 3as5_A           49 GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLI  100 (186)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3334445555555555555555544 33344445555555555555555444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.32  E-value=0.025  Score=34.14  Aligned_cols=80  Identities=16%  Similarity=0.197  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-----
Q 042077           26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-----   98 (109)
Q Consensus        26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-----   98 (109)
                      ..+..-+...+.++.|+-+.++++...+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++     
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD   84 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence            3455667788999999999999998876 5667788999999999999999988752 11234455555555543     


Q ss_pred             hhHHHhh
Q 042077           99 FNEKYLE  105 (109)
Q Consensus        99 ~~~al~~  105 (109)
                      +++|...
T Consensus        85 ~~~A~~~   91 (136)
T 2fo7_A           85 YDEAIEY   91 (136)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.31  E-value=0.011  Score=38.61  Aligned_cols=68  Identities=13%  Similarity=-0.012  Sum_probs=52.6

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhh
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQ   96 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~   96 (109)
                      -.-+...+.|+.|+-+.+|++.+.+ ++.-.+.+|.||+..|++..|...+++. .+...++....+..+
T Consensus        59 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  128 (142)
T 2xcb_A           59 GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR  128 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence            3446678999999999999999997 7888899999999999999999988763 222334444444443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=96.28  E-value=0.026  Score=37.43  Aligned_cols=71  Identities=13%  Similarity=-0.038  Sum_probs=50.2

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +-.-+...+.++.|+-..++...+.+ +++..+.+|.+++..|+|..|+..+++. .+.+.++...+-.|.|+
T Consensus        79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~  151 (184)
T 3vtx_A           79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY  151 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            34455667788888888888888876 5667788888888888888888877652 22345555556566554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=96.26  E-value=0.02  Score=35.58  Aligned_cols=54  Identities=7%  Similarity=-0.037  Sum_probs=46.3

Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHhhcC-C---chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           27 GLVRDCVSKHLYSSAIFFADKIAALTN-D---PTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        27 ~~v~~~L~~h~Y~tAiF~ADKl~als~-~---~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .+-.-+...+.|+.|+-+-++++...+ +   ++..+.+|.+++..|++..|...+++
T Consensus        44 ~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  101 (129)
T 2xev_A           44 WLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQ  101 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344456788999999999999999987 4   56689999999999999999998876

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.23  E-value=0.026  Score=36.25  Aligned_cols=73  Identities=12%  Similarity=0.028  Sum_probs=56.2

Q ss_pred             HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ..+..-+...+.++.|+-+.++++...+ ++.-.+.+|.+++..|++..|...+++. .....++...+..|.++
T Consensus        80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  154 (186)
T 3as5_A           80 TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY  154 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            3445556778999999999999999886 6777888999999999999999988762 22234566666666654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.023  Score=35.73  Aligned_cols=55  Identities=15%  Similarity=0.056  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ..+-.-+...+.|+.|+-..+|++.+.+ ++...+.+|.+++..|+|..|...+++
T Consensus        42 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~   97 (126)
T 3upv_A           42 SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA   97 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            3344456778999999999999999997 677889999999999999999998876

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.18  E-value=0.016  Score=44.09  Aligned_cols=78  Identities=21%  Similarity=0.323  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHhhcc-----
Q 042077           24 KLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQKN-----   98 (109)
Q Consensus        24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~c~-----   98 (109)
                      .+..-|-.+..-..|+||+|++-=+++  ..|+--.++.-++|.+|+|.||+.+|.+-+    .....|--+.|+     
T Consensus         4 ~~~~kI~Ks~kY~dYdt~~fLsa~L~~--~~~eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~LCy~klKd   77 (242)
T 3kae_A            4 KLIGKICKSIRYRDYETAIFLAACLLP--CKPEYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYESLCYKKKKD   77 (242)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHC------CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhcccccHHHHHHHHHcc--CChHHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHHHHHHHHHH
Confidence            345566777888899999999976654  567999999999999999999999999865    233345555565     


Q ss_pred             hhHHHhhhh
Q 042077           99 FNEKYLEIE  107 (109)
Q Consensus        99 ~~~al~~~~  107 (109)
                      |+.|+-.+|
T Consensus        78 YkkA~~~le   86 (242)
T 3kae_A           78 YKKAIKSLE   86 (242)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555554443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.16  E-value=0.034  Score=33.37  Aligned_cols=74  Identities=14%  Similarity=0.172  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +..+..-+...+.|+.|+-+.++++...+ ++...+.+|.+++..|++..|...+++. .+...++..++..+.++
T Consensus        46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34455666788999999999999999886 6677789999999999999999988762 22234555555555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.12  E-value=0.024  Score=37.60  Aligned_cols=75  Identities=8%  Similarity=0.062  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHH-HhhcCCh--HHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQA-LFLGRHY--RRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~-~y~~gqy--~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      -+..+-.-+...+.|+.|+-+.+|++.+.+ ++.-.+.+|.+ ++..|++  ..|...+++. .+...++...+..|.++
T Consensus        46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  125 (177)
T 2e2e_A           46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDA  125 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            344555667788899999999999988886 66777888999 7788998  8888877652 22345566666666654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.12  E-value=0.019  Score=43.86  Aligned_cols=85  Identities=11%  Similarity=0.129  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ..+.+...-..+..++.|+.|+=+-++++...+ ++...+.+|.|++..|+|..|...+++. .+.+.++...+..|.++
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            467788888899999999999999999999987 7778889999999999999999988763 23355677777777765


Q ss_pred             -----hhHHHhh
Q 042077           99 -----FNEKYLE  105 (109)
Q Consensus        99 -----~~~al~~  105 (109)
                           +++|+..
T Consensus       104 ~~~g~~~~A~~~  115 (537)
T 3fp2_A          104 ESLGNFTDAMFD  115 (537)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHH
Confidence                 4555543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.08  E-value=0.044  Score=37.74  Aligned_cols=77  Identities=8%  Similarity=-0.152  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      .+-+..+..-+...+.|+.|+=+.++++.+.+ ++.-.+.+|.+++..|++..|...+++. .+...+....+..|.++
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence            56666777778889999999999999988876 5667788899999999999998887652 12233445555555543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.05  E-value=0.049  Score=38.42  Aligned_cols=68  Identities=7%  Similarity=0.039  Sum_probs=39.1

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcC-ChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGR-HYRRPFHLLNAS-KIVPRDLRFRYLAEQK   97 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~g-qy~RA~~LL~~~-~L~~~~~~crYLaA~c   97 (109)
                      .-+...+.++.|+-+.++++...+ ++...+.+|.+++..| ++..|...+++. .+...++...+..|.+
T Consensus        64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  134 (330)
T 3hym_B           64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHS  134 (330)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            344556666666666666666665 5556666666777666 666666665542 2223344444444444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.00  E-value=0.044  Score=34.31  Aligned_cols=56  Identities=20%  Similarity=0.057  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+..-+...+.|+.|+-+.++++.+.+ ++.-.+.+|.+++..|++..|...+++
T Consensus        68 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  124 (148)
T 2dba_A           68 HRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQR  124 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            33444556789999999999999999987 667788999999999999999998876

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.053  Score=36.84  Aligned_cols=76  Identities=16%  Similarity=0.068  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      .-+..+..-+...+.|+.|+=+.++++.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus       140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  217 (258)
T 3uq3_A          140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ  217 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            3344555667788999999999999999887 6777889999999999999999988763 22244556666666654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=95.96  E-value=0.027  Score=38.04  Aligned_cols=72  Identities=6%  Similarity=-0.133  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +-..-..+...+.|+.|+-.-++++  .+++...+.+|.+++..|+|..|...+++. .+...++...+..|.++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            3445556677888888888888874  446677788888888888888888877652 22244555555555554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=95.96  E-value=0.034  Score=34.84  Aligned_cols=56  Identities=9%  Similarity=0.021  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+-.-+...+.|+.|+-+.++++.+.+ ++.-.+.+|.+++..|++..|...+++
T Consensus        46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  102 (137)
T 3q49_B           46 YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR  102 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33444556778999999999999999987 677889999999999999999988775

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.92  E-value=0.032  Score=34.70  Aligned_cols=56  Identities=5%  Similarity=-0.088  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+-.-+...+.|+.|+-+.++++.+.+ ++...+.+|.++...|++..|...+++
T Consensus        22 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A           22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            33445556789999999999999999987 567888999999999999999998876

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=95.89  E-value=0.018  Score=40.10  Aligned_cols=49  Identities=14%  Similarity=0.134  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHH
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRR   73 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~R   73 (109)
                      +..+-.-+...+.|+.|+=+-+|++.+.+ +++..+.+|.+|+..|+...
T Consensus        91 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~  140 (208)
T 3urz_A           91 LEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK  140 (208)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHH
Confidence            33444556778999999999999999987 67778889999988876543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=95.85  E-value=0.036  Score=43.02  Aligned_cols=78  Identities=14%  Similarity=0.069  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHh----------------hcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-C
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAA----------------LTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-K   82 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~a----------------ls~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~   82 (109)
                      ....++.+-..+..++.|+.|+-.-+|.+.                +.+ ++.-.+.+|.||+..|+|..|+..+++. .
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            344556666666777777777777777666                222 2345556777777777777777766552 2


Q ss_pred             CCCCChhhHHHHhhcc
Q 042077           83 IVPRDLRFRYLAEQKN   98 (109)
Q Consensus        83 L~~~~~~crYLaA~c~   98 (109)
                      +...++...|..|.|+
T Consensus       302 ~~p~~~~a~~~lg~~~  317 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGW  317 (370)
T ss_dssp             TCTTCHHHHHHHHHHH
T ss_pred             hCchhHHHHHHHHHHH
Confidence            3344555556556554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=95.84  E-value=0.035  Score=38.87  Aligned_cols=76  Identities=9%  Similarity=0.072  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cc---hhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCCh---hhHHHHhh
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DP---TGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDL---RFRYLAEQ   96 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~---~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~---~crYLaA~   96 (109)
                      +-..-..++.++.|+.|+=.-++++...+ ++   +..+++|.+++..|+|..|+..+++- .+.+.++   ...|..|.
T Consensus         7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~   86 (225)
T 2yhc_A            7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL   86 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence            34445668889999999999999999876 33   57899999999999999999987662 1122333   26677777


Q ss_pred             cchh
Q 042077           97 KNFN  100 (109)
Q Consensus        97 c~~~  100 (109)
                      |++.
T Consensus        87 ~~~~   90 (225)
T 2yhc_A           87 TNMA   90 (225)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=95.79  E-value=0.053  Score=36.74  Aligned_cols=48  Identities=19%  Similarity=0.142  Sum_probs=21.7

Q ss_pred             HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077           32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLN   79 (109)
Q Consensus        32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~   79 (109)
                      +...+.++.|+-+.+|++.+.+ ++.-.+.+|.+++..|++..|...++
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  149 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ  149 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            3344444444444444444443 33334444444444444444444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=95.78  E-value=0.035  Score=37.77  Aligned_cols=74  Identities=18%  Similarity=0.107  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +..+-.-++..+.|+.|+=+.++++.+.+ ++...+.+|.+|+..|+|..|...+++. .+...+...+...+.|.
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            33444556788999999999999999987 6778899999999999999999988763 23345666666666665

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.77  E-value=0.019  Score=36.63  Aligned_cols=56  Identities=9%  Similarity=0.067  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhCCchhHHHHHHHHHhhcC-------C-chhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077           26 RGLVRDCVSKHLYSSAIFFADKIAALTN-------D-PTGVYMQAQALFLGRHYRRPFHLLNAS   81 (109)
Q Consensus        26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-------~-~~dv~lLAq~~y~~gqy~RA~~LL~~~   81 (109)
                      -.+=..+.+++.|..|++|-++.+...+       + ++-...||.|+|..|++.+|....++.
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a   72 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3556778899999999999999887642       1 223458999999999999999988763

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=95.75  E-value=0.091  Score=37.27  Aligned_cols=70  Identities=21%  Similarity=0.210  Sum_probs=57.0

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ..-+...+.|+.|+-+-++++...+ ++.-.+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus       127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  198 (359)
T 3ieg_A          127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY  198 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5677889999999999999999887 6778889999999999999999988763 33455666767777665

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=95.75  E-value=0.027  Score=37.59  Aligned_cols=67  Identities=15%  Similarity=0.085  Sum_probs=52.6

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhh
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQ   96 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~   96 (109)
                      .-+...+.|+.|+=+.+|++.+.+ ++...+.+|.||+..|++..|...+++. .+...++....+..+
T Consensus        63 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  131 (148)
T 2vgx_A           63 ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTR  131 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence            445678999999999999999997 7888999999999999999999988763 222344555444433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=95.69  E-value=0.087  Score=36.19  Aligned_cols=70  Identities=16%  Similarity=0.066  Sum_probs=42.2

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK   97 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c   97 (109)
                      +..-+...+.++.|+-+.++++.+.+ ++...+.+|.+++..|++..|...+++. .....++...+..+.+
T Consensus       147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  218 (252)
T 2ho1_A          147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRL  218 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            34445566777777777777777665 4556667777777777777777766552 2223344444444443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=95.68  E-value=0.069  Score=36.16  Aligned_cols=74  Identities=14%  Similarity=0.137  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +..+..-+...+.++.|+-..++++.+.+ ++.-.+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus        60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~  135 (243)
T 2q7f_A           60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL  135 (243)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            33444555667777777777777777765 4555666777777777777777766542 11233444445455443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=95.67  E-value=0.044  Score=38.35  Aligned_cols=75  Identities=13%  Similarity=0.057  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcchh
Q 042077           26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNFN  100 (109)
Q Consensus        26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~~  100 (109)
                      ..+-.-++..+.|+.|+=.-++++.+.+ +++..+.+|.+++..|++..|...+++. .+.+.++...+..|.++..
T Consensus         9 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~   85 (217)
T 2pl2_A            9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA   85 (217)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            3445566789999999999999999987 7788999999999999999999988763 3345566666666665543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=95.64  E-value=0.064  Score=36.13  Aligned_cols=56  Identities=5%  Similarity=-0.081  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+-.-+...+.|+.|+=+.++.+.+.+ ++...+.+|.+++..|+|..|...+++
T Consensus        40 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~   96 (213)
T 1hh8_A           40 CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE   96 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            34455567789999999999999999986 667788899999999999999998875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=95.64  E-value=0.063  Score=40.06  Aligned_cols=86  Identities=10%  Similarity=0.011  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077           20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK   97 (109)
Q Consensus        20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c   97 (109)
                      +..+.+..+...+...+.|+.|+-+-++++...+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.+
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  103 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL  103 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            3466677788888999999999999999998876 6778889999999999999999988762 1223445555555555


Q ss_pred             c-----hhHHHhh
Q 042077           98 N-----FNEKYLE  105 (109)
Q Consensus        98 ~-----~~~al~~  105 (109)
                      +     +++|...
T Consensus       104 ~~~~g~~~~A~~~  116 (450)
T 2y4t_A          104 LLKQGKLDEAEDD  116 (450)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHH
Confidence            4     4555443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=95.61  E-value=0.047  Score=39.49  Aligned_cols=72  Identities=4%  Similarity=-0.102  Sum_probs=55.8

Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           27 GLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        27 ~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ....-+...+.|+.|+-+.++++.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus        69 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  142 (368)
T 1fch_A           69 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF  142 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            345566779999999999999999886 6678888999999999999999988763 22344566666666654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=95.61  E-value=0.091  Score=38.88  Aligned_cols=82  Identities=15%  Similarity=0.111  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhc--C-CchhHHHHHHHHhhcCChHHHHHHHhcCCCCCCChhhHHHHhhc
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALT--N-DPTGVYMQAQALFLGRHYRRPFHLLNASKIVPRDLRFRYLAEQK   97 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als--~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~~L~~~~~~crYLaA~c   97 (109)
                      ...-++.+..-+...+.++.|+=.-++++...  + ++.-.+.+|.++...|++..|...+++    ..++.+.+..|++
T Consensus        64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~  139 (291)
T 3mkr_A           64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQI  139 (291)
T ss_dssp             HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHH
Confidence            45677888888888899999999999998764  3 566778899999999999999999998    4677788877776


Q ss_pred             c-----hhHHHhhh
Q 042077           98 N-----FNEKYLEI  106 (109)
Q Consensus        98 ~-----~~~al~~~  106 (109)
                      +     +++|...+
T Consensus       140 ~~~~g~~~~A~~~l  153 (291)
T 3mkr_A          140 LLKLDRLDLARKEL  153 (291)
T ss_dssp             HHHTTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHH
Confidence            4     45555443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=95.60  E-value=0.049  Score=39.83  Aligned_cols=74  Identities=8%  Similarity=-0.010  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +-.....+..++.|+.|+-+-++++.+.+ ++...+.+|.+++..|+|..|...+++. .+...++...+..|.++
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY  143 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            33445667779999999999999999987 6778899999999999999999988763 22344556666666554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=95.58  E-value=0.064  Score=35.65  Aligned_cols=51  Identities=6%  Similarity=-0.015  Sum_probs=23.3

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLN   79 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~   79 (109)
                      ..-+...+.|+.|+-+.++++...+ ++.-.+.+|.+++..|++..|...++
T Consensus        15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~   66 (225)
T 2vq2_A           15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR   66 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHH
Confidence            3334444444444444444444443 23334444444444444444444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=95.54  E-value=0.087  Score=34.05  Aligned_cols=57  Identities=14%  Similarity=0.104  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      -.+.+=..+..++.|+.|+-+-+|.+.+.+ ++.-.+-+|.||+..|+|..|+..+++
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~   67 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK   67 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence            345556678889999999999999999987 455666799999999999999987765

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=95.53  E-value=0.089  Score=37.08  Aligned_cols=74  Identities=11%  Similarity=0.075  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +..+..-+...+.|+.|+-+-++++.+.+ ++...+.+|.+++..|++..|...+++. .+.+.++...+..+.|+
T Consensus       239 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          239 LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence            33445556788999999999999999987 6778899999999999999999999874 44456777777777776

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=95.52  E-value=0.08  Score=40.00  Aligned_cols=77  Identities=8%  Similarity=-0.018  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCc----------------hhHHHHHHHHhhcCChHHHHHHHhcC-CCC
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDP----------------TGVYMQAQALFLGRHYRRPFHLLNAS-KIV   84 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~----------------~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~   84 (109)
                      ...+..+-.-+..++.|+.|+-.-+|.+.+.++.                .-.+.+|.||+..|+|..|+..+++. .+.
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4445555555666777777777777777766532                45556677777777777777666542 222


Q ss_pred             CCChhhHHHHhhcc
Q 042077           85 PRDLRFRYLAEQKN   98 (109)
Q Consensus        85 ~~~~~crYLaA~c~   98 (109)
                      ..++...|..|.++
T Consensus       227 p~~~~a~~~lg~~~  240 (336)
T 1p5q_A          227 SNNEKGLSRRGEAH  240 (336)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHH
Confidence            34444555555443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=95.48  E-value=0.075  Score=35.14  Aligned_cols=56  Identities=11%  Similarity=-0.189  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ...+-.-+...+.|+.|+-.-+|++.+.+ ++...+.+|.+|+..|++..|...+++
T Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  166 (184)
T 3vtx_A          110 YYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK  166 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            33444556788999999999999999987 677788999999999999999998876

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=95.48  E-value=0.066  Score=34.18  Aligned_cols=55  Identities=15%  Similarity=0.106  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ..+..-+...+.|+.|+-+.+|++.+.+ ++.-.+.+|.+++..|++..|...+++
T Consensus        51 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  106 (166)
T 1a17_A           51 GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYET  106 (166)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            3444556788999999999999999987 677889999999999999999998876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=95.43  E-value=0.069  Score=37.67  Aligned_cols=79  Identities=11%  Similarity=0.111  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-C---chhHHHHHHHHhhcCChHHHHHHHhcC-CCCC---CChhhHHH
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-D---PTGVYMQAQALFLGRHYRRPFHLLNAS-KIVP---RDLRFRYL   93 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~---~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~---~~~~crYL   93 (109)
                      .+.+-..-..++.++.|+.|+=+-++++...+ +   ++..|.+|.|++..|+|..|...+++. .+.+   ..+...|.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~   94 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence            34456666778889999999999999999987 4   567899999999999999999988762 1111   22345666


Q ss_pred             Hhhcchh
Q 042077           94 AEQKNFN  100 (109)
Q Consensus        94 aA~c~~~  100 (109)
                      .|.|++.
T Consensus        95 lg~~~~~  101 (261)
T 3qky_A           95 RAMCYYK  101 (261)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6776643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=95.39  E-value=0.045  Score=38.26  Aligned_cols=49  Identities=14%  Similarity=0.071  Sum_probs=26.5

Q ss_pred             HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhc-----------CChHHHHHHHhc
Q 042077           32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLG-----------RHYRRPFHLLNA   80 (109)
Q Consensus        32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~-----------gqy~RA~~LL~~   80 (109)
                      +...+.++.|+=..+|++.+.+ +++..+.+|.++...           |++..|...+++
T Consensus        49 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  109 (217)
T 2pl2_A           49 QLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD  109 (217)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHH
Confidence            3445555555555555555554 344445555555555           555555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=95.36  E-value=0.11  Score=35.24  Aligned_cols=60  Identities=20%  Similarity=0.138  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ..+.+..+-.-+..++.|+.|+-+.++++.+.+++...+.+|.+++..|++..|...+++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~   63 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLND   63 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            356677788888999999999999999998886778899999999999999999998876

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=95.34  E-value=0.09  Score=39.71  Aligned_cols=77  Identities=12%  Similarity=0.076  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF   99 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~   99 (109)
                      .-+..+-.-++..+.|+.|+-+.+|++.+.+ ++...+.+|.+|+..|+|..|...+++. .+...+....+..+.|+.
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            3444455567789999999999999999997 7789999999999999999999988763 334556667777777653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=95.32  E-value=0.09  Score=31.00  Aligned_cols=54  Identities=11%  Similarity=-0.110  Sum_probs=46.3

Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHhhcCC---chhHHHHHHHHhhc-CChHHHHHHHhc
Q 042077           27 GLVRDCVSKHLYSSAIFFADKIAALTND---PTGVYMQAQALFLG-RHYRRPFHLLNA   80 (109)
Q Consensus        27 ~~v~~~L~~h~Y~tAiF~ADKl~als~~---~~dv~lLAq~~y~~-gqy~RA~~LL~~   80 (109)
                      .+-.-+...+.|+.|+-+.+|.+.+.++   +...+.+|.+++.. |++..|...+++
T Consensus        45 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  102 (112)
T 2kck_A           45 MKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEAR  102 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3444567789999999999999998865   56778999999999 999999998876

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=95.29  E-value=0.079  Score=37.29  Aligned_cols=74  Identities=18%  Similarity=0.064  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +..+..-+...+.++.|+-+.++++.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  250 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY  250 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            44455566788999999999999999886 5677889999999999999999988762 22234566666666654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=95.29  E-value=0.16  Score=35.18  Aligned_cols=68  Identities=9%  Similarity=-0.043  Sum_probs=41.3

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHh
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAE   95 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA   95 (109)
                      +-.-+...+.|+.|+-+-+|++.+.+ ++.-.+.+|.+++..|++..|...+++. .+...++...+..|
T Consensus        80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  149 (272)
T 3u4t_A           80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG  149 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence            33445556677777777777777665 5556666777777777777777766653 22233444444444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=95.27  E-value=0.048  Score=37.32  Aligned_cols=51  Identities=16%  Similarity=0.011  Sum_probs=46.4

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .-+...+.|+.|+=.-+|.+.+.+ +|.-.+.+|.||+..|++..|...+++
T Consensus        78 ~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~  129 (151)
T 3gyz_A           78 AIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL  129 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            345678999999999999999997 788999999999999999999998876

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=95.24  E-value=0.086  Score=36.51  Aligned_cols=50  Identities=10%  Similarity=-0.067  Sum_probs=29.9

Q ss_pred             HHHHhCCchhHHHHHHHHHhhcCCchh----HHHHHHHHhhcCChHHHHHHHhc
Q 042077           31 DCVSKHLYSSAIFFADKIAALTNDPTG----VYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        31 ~~L~~h~Y~tAiF~ADKl~als~~~~d----v~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      -+...+.|+.|+-+.++++...++++-    .+.+|.+++..|++..|...+++
T Consensus        46 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~   99 (272)
T 3u4t_A           46 CYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQA   99 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            445566666666666666663333332    45666666666666666665554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=95.23  E-value=0.11  Score=40.25  Aligned_cols=74  Identities=12%  Similarity=0.092  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +-.+-.-++..++|+.|+-+.+|++.+.+ ++...+.+|.+|+..|+|..|...+++. .+...+...+...+.++
T Consensus       276 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~  351 (370)
T 1ihg_A          276 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  351 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            33444556788999999999999999987 6778899999999999999999988763 33345666666666655

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=95.22  E-value=0.065  Score=32.46  Aligned_cols=56  Identities=13%  Similarity=0.198  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-C-------chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-D-------PTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~-------~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+..-+...+.|+.|+-+.++.+.+.+ +       +.-.+.+|.+++..|++..|...+++
T Consensus        41 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  104 (131)
T 1elr_A           41 ITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK  104 (131)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            33445556789999999999999999875 3       55778899999999999999998876

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=95.20  E-value=0.082  Score=38.20  Aligned_cols=74  Identities=15%  Similarity=0.019  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +..+..-+...+.|+.|+-+-++.+.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus       220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  295 (368)
T 1fch_A          220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  295 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34455566778999999999999998886 5677888999999999999999888763 22344556666666654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=95.08  E-value=0.1  Score=36.75  Aligned_cols=72  Identities=7%  Similarity=-0.048  Sum_probs=52.5

Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           27 GLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        27 ~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      .....++.++.|+.|+=+.++++...+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus        26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   99 (327)
T 3cv0_A           26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   99 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence            344556778999999999999888876 5667778899999999999999877752 22234555555556554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=94.99  E-value=0.0096  Score=39.74  Aligned_cols=64  Identities=9%  Similarity=0.022  Sum_probs=47.5

Q ss_pred             hCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           35 KHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        35 ~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ++.++.|+=.-.+.....+ ++...|.||.+|+..|+|..|...+++. .+.+.++...+..|.|+
T Consensus        10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~   75 (150)
T 4ga2_A           10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLY   75 (150)
T ss_dssp             HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3455666666666665554 4567789999999999999999988763 34456778888888776

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=94.96  E-value=0.08  Score=42.12  Aligned_cols=74  Identities=11%  Similarity=0.019  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +..+-.-+..++.|+.|+-..+|.+.+.+ +++-.+.+|.+|+..|++..|...+++. .+...+....+..|.++
T Consensus        26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  101 (568)
T 2vsy_A           26 WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHAL  101 (568)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34444455566777777777777777665 4555666777777777777776666542 12233444555555543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=94.86  E-value=0.13  Score=40.59  Aligned_cols=78  Identities=10%  Similarity=0.052  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCc----------------hhHHHHHHHHhhcCChHHHHHHHhcC-CC
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDP----------------TGVYMQAQALFLGRHYRRPFHLLNAS-KI   83 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~----------------~dv~lLAq~~y~~gqy~RA~~LL~~~-~L   83 (109)
                      ....++..-..+..++.|+.|+-.-+|.+.+.++.                .-.+.+|.||+..|+|..|+..+++. .+
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            34555666666777778888887777777776532                44556777888888887777766552 22


Q ss_pred             CCCChhhHHHHhhcc
Q 042077           84 VPRDLRFRYLAEQKN   98 (109)
Q Consensus        84 ~~~~~~crYLaA~c~   98 (109)
                      ...++...|-.|.|+
T Consensus       347 ~p~~~~a~~~~g~a~  361 (457)
T 1kt0_A          347 DSANEKGLYRRGEAQ  361 (457)
T ss_dssp             STTCHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHH
Confidence            334555555555554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=94.75  E-value=0.13  Score=39.24  Aligned_cols=74  Identities=11%  Similarity=-0.055  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +..+..-+...+.|+.|+-+.+|++.+.+ ++...+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus       313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  388 (537)
T 3fp2_A          313 YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL  388 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            34445556678888888888888888876 5677788888888888888888877652 22234455555555554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=94.61  E-value=0.044  Score=35.29  Aligned_cols=50  Identities=14%  Similarity=-0.047  Sum_probs=45.0

Q ss_pred             HHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           31 DCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        31 ~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      -+...+.++.|+=.-+|++.+.+ +++..+.||.++...|++..|...+++
T Consensus        60 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  110 (121)
T 1hxi_A           60 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA  110 (121)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            35678999999999999999997 677889999999999999999998876

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=94.56  E-value=0.07  Score=33.05  Aligned_cols=59  Identities=7%  Similarity=-0.064  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           40 SAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        40 tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      .|+=.-++++...+ ++.-.+.+|.+++..|+|..|...+++. .+...++...+..|.|+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   63 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL   63 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            45566677777776 6778899999999999999999988763 22344556666666665

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=94.53  E-value=0.072  Score=40.36  Aligned_cols=29  Identities=7%  Similarity=-0.103  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHhhc
Q 042077           24 KLRGLVRDCVSKHLYSSAIFFADKIAALT   52 (109)
Q Consensus        24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als   52 (109)
                      .++..-..+..++.|+.|+-.-++.+.+.
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~  209 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM  209 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            33344444444555555555555544444

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=94.48  E-value=0.058  Score=43.15  Aligned_cols=73  Identities=15%  Similarity=0.129  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK   97 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c   97 (109)
                      +..+-.-+..++.|+.|+=..+|.+.+.+ ++...+.+|.+|+..|+|..|...+++. .+...+....+..+.|
T Consensus        43 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           43 YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            33444556778889999999999888876 5677888899999999999998887763 2234455666666666

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=94.44  E-value=0.1  Score=34.49  Aligned_cols=49  Identities=18%  Similarity=0.245  Sum_probs=43.9

Q ss_pred             HHHhCCc--hhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           32 CVSKHLY--SSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        32 ~L~~h~Y--~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +...+.|  +.|+-+.++++.+.+ ++.-.+.+|.+++..|++..|...+++
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  140 (177)
T 2e2e_A           89 YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK  140 (177)
T ss_dssp             HHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            4567888  999999999999987 677888999999999999999998876

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=94.39  E-value=0.16  Score=37.03  Aligned_cols=73  Identities=16%  Similarity=0.039  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ..+..-+...+.|+.|+=+-++++.+.+ ++.-.+.+|.+++..|++..|...+++. .+...++...+..|.++
T Consensus       217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          217 TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC  291 (365)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            3344556678999999999999999886 6778888999999999999999888763 22234455555555554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=94.39  E-value=0.25  Score=39.03  Aligned_cols=74  Identities=16%  Similarity=0.221  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +..+-.-++..+.|+.|+-..+|++.+.+ ++...|.+|.+|+..|+|..|...+++. .+...+....+..+.++
T Consensus       320 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            33444556788999999999999999987 7789999999999999999999988773 33445555555555554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=94.26  E-value=0.091  Score=39.81  Aligned_cols=69  Identities=13%  Similarity=0.103  Sum_probs=47.3

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK   97 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c   97 (109)
                      -.-++..+.|+.|+-..+|++.+.+ ++...|.+|.+|+..|+|..|...+++. .+...+...+...+.+
T Consensus       237 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l  307 (338)
T 2if4_A          237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL  307 (338)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3445678999999999999999987 6778899999999999999999999874 3334445555544444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=94.20  E-value=0.27  Score=33.79  Aligned_cols=56  Identities=16%  Similarity=0.009  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+..-+...+.|+.|+-+-+|++.+.+ ++...+.+|.+++..|++..|...+++
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  136 (275)
T 1xnf_A           80 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA  136 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            34455567789999999999999999987 678889999999999999999998876

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=94.16  E-value=0.24  Score=32.72  Aligned_cols=48  Identities=10%  Similarity=0.043  Sum_probs=23.1

Q ss_pred             HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077           32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLN   79 (109)
Q Consensus        32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~   79 (109)
                      +...+.++.|+-+.++.+...+ ++...+.+|.+++..|++..|...++
T Consensus       123 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  171 (225)
T 2vq2_A          123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK  171 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3444455555555555444443 33444445555555555555554443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=94.13  E-value=0.36  Score=32.95  Aligned_cols=49  Identities=4%  Similarity=-0.151  Sum_probs=24.8

Q ss_pred             HHHhCCchhHHHHHHHHHhhcC-Cc-------hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           32 CVSKHLYSSAIFFADKIAALTN-DP-------TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        32 ~L~~h~Y~tAiF~ADKl~als~-~~-------~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +...+.|+.|+-+-++++.+.+ ++       +--+.+|.+++..|+|..|...+++
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~  142 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH  142 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence            3445555555555555555544 22       2234455555555555555555544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=94.02  E-value=0.22  Score=38.69  Aligned_cols=77  Identities=16%  Similarity=0.059  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcch
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKNF   99 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~~   99 (109)
                      .-+..+.+-+...+.++.|+-+.++++.+.+ ++...+.+|.+|...|++..|...+++- .+.+.++....+.++++-
T Consensus       517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            3455667777889999999999999999987 6778889999999999999999988763 334566777777777653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=93.94  E-value=0.32  Score=36.18  Aligned_cols=71  Identities=4%  Similarity=-0.005  Sum_probs=51.1

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcCC-c----hhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTND-P----TGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~~-~----~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ...-+...+.|+.|+-+-++++.+.++ +    .-.+.+|.++...|++..|...+++. .+...++...+..|.++
T Consensus       263 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  339 (450)
T 2y4t_A          263 SAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY  339 (450)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            366778889999999999998888764 2    24567889999999999999888763 22234555555555544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.88  E-value=0.13  Score=32.68  Aligned_cols=45  Identities=7%  Similarity=0.167  Sum_probs=40.8

Q ss_pred             CCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           36 HLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        36 h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ...+.|.-+-+|.+.+.+ ++...++||..+|..|+|..|+...++
T Consensus        23 ~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~   68 (93)
T 3bee_A           23 AMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVL   68 (93)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            347899999999999997 789999999999999999999998776

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=93.72  E-value=0.065  Score=35.91  Aligned_cols=57  Identities=12%  Similarity=0.096  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS   81 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~   81 (109)
                      +-.....++..+.|+.|+=+.++++.+.+ +++-.+.+|.++...|++..|...+++-
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a   66 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATI   66 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            44555667889999999999999999886 6778899999999999999999999874

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=93.65  E-value=0.44  Score=35.07  Aligned_cols=53  Identities=11%  Similarity=-0.050  Sum_probs=35.6

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..-+...+.++.|+-+-++.+.+.+ +++..+.+|.++...|++..|...+++
T Consensus       277 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  330 (388)
T 1w3b_A          277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK  330 (388)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            33345556777777777777777765 455566677777777777777777665

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=93.19  E-value=0.28  Score=38.93  Aligned_cols=74  Identities=9%  Similarity=0.007  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +..+-.-+..++.|+.|+-+.+|.+.+.+ +++..+.+|.+|+..|++..|...+++. .+...+....+..|.++
T Consensus        60 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  135 (568)
T 2vsy_A           60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR  135 (568)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            33445566788999999999999999987 6778899999999999999999988763 22334555555555443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=93.13  E-value=0.34  Score=35.66  Aligned_cols=50  Identities=2%  Similarity=-0.138  Sum_probs=32.5

Q ss_pred             HHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           31 DCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        31 ~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      -++..+.++.|+-+.++.+...+ ++...+.+|.+++..|++..|...+++
T Consensus        42 ~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   92 (388)
T 1w3b_A           42 IHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH   92 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34556667777777777666665 445566677777777777777666654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=93.04  E-value=0.32  Score=36.55  Aligned_cols=56  Identities=14%  Similarity=-0.022  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+..-++..+.|+.|+-+.++++.+.+ ++...+.+|.+++..|++..|...+++
T Consensus        42 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   98 (514)
T 2gw1_A           42 YSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV   98 (514)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            44556677889999999999999999987 567889999999999999999988765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=92.99  E-value=0.2  Score=35.25  Aligned_cols=53  Identities=17%  Similarity=0.246  Sum_probs=45.0

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcC-C---chhHHHHHHHHhh--------cCChHHHHHHHhc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTN-D---PTGVYMQAQALFL--------GRHYRRPFHLLNA   80 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~-~---~~dv~lLAq~~y~--------~gqy~RA~~LL~~   80 (109)
                      +-.-+...+.|+.|+=+-+|++.+.+ +   +...|.+|.|++.        .|++..|...+++
T Consensus        58 lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~  122 (261)
T 3qky_A           58 LARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQL  122 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence            34446789999999999999999976 3   3467899999999        9999999998775

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=92.98  E-value=0.43  Score=34.85  Aligned_cols=59  Identities=14%  Similarity=0.060  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS   81 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~   81 (109)
                      +.+...-..++..+.++.|+=.-++++.+.+ +++-.+.||.++...|++..|..++++-
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~  177 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI  177 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            3455566677899999999999999999997 6778899999999999999999999874

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=92.94  E-value=0.099  Score=38.68  Aligned_cols=52  Identities=13%  Similarity=0.160  Sum_probs=34.1

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcCCc--hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTNDP--TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~~~--~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      |+.....|+|+.|+=+++++...++++  +-.++++++|...|++..|+.-+++
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~   59 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP   59 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc
Confidence            455666777777777777765554422  2336667777777777777776655

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=92.91  E-value=0.18  Score=36.86  Aligned_cols=54  Identities=9%  Similarity=0.023  Sum_probs=46.6

Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           27 GLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        27 ~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .+-.-++..+.|+.|+-..+|++.+.+ ++.-.+.+|.+|+..|+|..|...+++
T Consensus        43 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   97 (281)
T 2c2l_A           43 NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR   97 (281)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            334456678999999999999999987 677889999999999999999988765

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=92.35  E-value=0.83  Score=31.57  Aligned_cols=58  Identities=10%  Similarity=0.028  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cc----hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DP----TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~----~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ..+...-..+...+.|+.|+-+.++++.+.+ ++    .-.+.+|.+++..|+|..|...+++
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   68 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH   68 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3455556677888999999999999988875 33    3456789999999999999887764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=92.21  E-value=0.58  Score=28.76  Aligned_cols=57  Identities=14%  Similarity=0.146  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHhhcC---C----chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN---D----PTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~---~----~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      -+..+-.-+...+.|+.|+-+.++.+.+.+   +    ..-.+.+|.+++..|+|..|...+++
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  114 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK  114 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            445566667889999999999999888764   2    23567789999999999999887765

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=92.10  E-value=0.63  Score=28.62  Aligned_cols=58  Identities=7%  Similarity=0.038  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC---Cc----hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN---DP----TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~---~~----~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .-+..+-.-+...+.|+.|+-+.++.+.+.+   ++    .-.+.+|.+++..|+|..|...+++
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   74 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK   74 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3455566677789999999999999998874   22    2567899999999999999998875

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=92.07  E-value=0.38  Score=37.94  Aligned_cols=56  Identities=9%  Similarity=-0.056  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHhCCc-hhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLY-SSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y-~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+-.-+...+.| +.|+=+-+|.+.+.+ +++..+.||.+|+..|++..|...+++
T Consensus       105 ~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A          105 LMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            33334444556666 666666666666655 455556666666666666666665554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=92.02  E-value=0.44  Score=32.41  Aligned_cols=59  Identities=14%  Similarity=0.207  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhc------CCc---hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALT------NDP---TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als------~~~---~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ..-+..+-.-+...+.|+.|+-+.++.+.+.      ++|   ...+.+|.+++..|++..|...+++
T Consensus       127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  194 (283)
T 3edt_B          127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKE  194 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3344555666788999999999999999882      133   3567899999999999999998875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=91.98  E-value=0.45  Score=37.92  Aligned_cols=68  Identities=15%  Similarity=0.112  Sum_probs=54.3

Q ss_pred             HHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           31 DCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        31 ~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      .+..++.|+.|+=..+|.+.+.+ ++...+.+|.+|+..|+|..|...+++. .+...++...+..|.++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   84 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   84 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34568899999999999999987 5778889999999999999999988763 33455666666666654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=91.95  E-value=0.68  Score=40.43  Aligned_cols=61  Identities=13%  Similarity=0.102  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcCC
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNASK   82 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~~   82 (109)
                      .+-|-.-+.=+++++.|+-|+=.|.|.+...+ +...=+.||+||...|+|..|+-.|.+.+
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            34466667778899999999999999999998 57899999999999999999999999865

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=91.67  E-value=0.19  Score=30.91  Aligned_cols=45  Identities=20%  Similarity=0.184  Sum_probs=34.0

Q ss_pred             CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           54 DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        54 ~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ++.-.+.+|.+++..|+|..|...+++. .+...++...+..|.|+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~   51 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLY   51 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            5667889999999999999999988763 22345566666667765

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=91.48  E-value=1.3  Score=30.54  Aligned_cols=52  Identities=4%  Similarity=-0.050  Sum_probs=44.7

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcCC-c---hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTND-P---TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~~-~---~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      -.-+..++.|+.|+-.-++++...++ |   +..+.+|.+++..|++..|...+++
T Consensus       154 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~  209 (225)
T 2yhc_A          154 AEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI  209 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            44567899999999999999998863 3   5689999999999999999998875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=91.42  E-value=0.81  Score=39.06  Aligned_cols=51  Identities=8%  Similarity=-0.111  Sum_probs=27.2

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .-+..+++|+.|+=.-+|.+.+.+ +++..+-||.+|...|++..|...+++
T Consensus        17 ~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~   68 (723)
T 4gyw_A           17 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE   68 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            334455555555555555555554 334444555555555555555555443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=91.26  E-value=0.89  Score=31.51  Aligned_cols=61  Identities=20%  Similarity=0.191  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhc------C---CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALT------N---DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als------~---~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+-+..+..-+..++.|+.|+-+.++++.+.      .   .+...+.+|.+++..|++..|...+++
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~   94 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND   94 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            346667788888999999999999999999873      1   234677899999999999999998876

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=91.05  E-value=1  Score=33.02  Aligned_cols=60  Identities=10%  Similarity=-0.021  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cc----hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DP----TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~----~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ....+...-..+...+.|+.|+=+.++++.+.+ ++    .-.+.+|.+++..|+|..|...+++
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  111 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH  111 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            455566677788899999999999999999976 33    2467899999999999999998765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=90.97  E-value=0.49  Score=39.31  Aligned_cols=70  Identities=17%  Similarity=0.107  Sum_probs=53.7

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ..-++..+.|+.|+=..++++.+.+ +++-.+.+|.+++..|+|..|...+++. .+...++...+-.|.|+
T Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~  511 (681)
T 2pzi_A          440 VRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATA  511 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            3456778999999999999999987 6677788999999999999999877763 23344556666566554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=90.77  E-value=0.67  Score=32.14  Aligned_cols=56  Identities=14%  Similarity=0.275  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhc------CCc---hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALT------NDP---TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als------~~~---~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+..-+...+.|+.|+-+.++.+.+.      ++|   .-.+.+|.+++..|++..|...+++
T Consensus       156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  220 (311)
T 3nf1_A          156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE  220 (311)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4445566778899999999999999882      233   3567789999999999999998876

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=89.94  E-value=1  Score=30.47  Aligned_cols=59  Identities=15%  Similarity=0.093  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhc-----C-Cc---hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALT-----N-DP---TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als-----~-~~---~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ..-+..+-.-+...+.|+.|+-+.++.+.+.     + +|   ...+.+|.+++..|++..|...+++
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  110 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR  110 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            3445566677788999999999999999884     2 23   3667899999999999999998876

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=88.99  E-value=1.5  Score=31.47  Aligned_cols=50  Identities=12%  Similarity=-0.011  Sum_probs=28.3

Q ss_pred             HHHHhCCchhHHHHHHHHHhhcCCch-------hHHHHHHHHhhcCChHHHHHHHhc
Q 042077           31 DCVSKHLYSSAIFFADKIAALTNDPT-------GVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        31 ~~L~~h~Y~tAiF~ADKl~als~~~~-------dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      -+..++.|+.|+.+-+|++.+..+..       -...+|.+|+..|+|..|....++
T Consensus       124 ~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~  180 (293)
T 3u3w_A          124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQ  180 (293)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34445566666666666666543111       245566666666666666655543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=88.98  E-value=0.8  Score=39.12  Aligned_cols=46  Identities=4%  Similarity=-0.026  Sum_probs=21.8

Q ss_pred             HhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHh
Q 042077           34 SKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLN   79 (109)
Q Consensus        34 ~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~   79 (109)
                      .++.|+.|+=.-+|.+.+.+ +++..+.||.+|...|++..|...++
T Consensus        55 ~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~  101 (723)
T 4gyw_A           55 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT  101 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34445555555555444443 33344444555555555555444443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=88.39  E-value=3.3  Score=29.64  Aligned_cols=61  Identities=11%  Similarity=-0.029  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cchh-----HH-HHHHHHhhcCChHHHHHHHhc
Q 042077           20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTG-----VY-MQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~d-----v~-lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +....+...+...+.++.|+.|+-.-+++....+ +|+.     .+ .++.+++..|+|..|...+++
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~  140 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKK  140 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence            3456677778899999999999999999988765 3331     11 378889989999999987765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=88.38  E-value=0.56  Score=36.66  Aligned_cols=48  Identities=10%  Similarity=-0.003  Sum_probs=29.0

Q ss_pred             HHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCC-hHHHHHHHhc
Q 042077           33 VSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRH-YRRPFHLLNA   80 (109)
Q Consensus        33 L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gq-y~RA~~LL~~   80 (109)
                      ..++.|+.|+=.-+|++.+.+ ++.--+.+|.++...|+ +..|+..+++
T Consensus       108 ~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~  157 (382)
T 2h6f_A          108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA  157 (382)
T ss_dssp             HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence            445666666666666666665 34444556666666665 6666665554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=88.38  E-value=1  Score=28.83  Aligned_cols=56  Identities=5%  Similarity=0.095  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cch-------hHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPT-------GVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~-------dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+-.-++..+.|+.|+=..+|.+.+.+ ++.       ..+-+|.++...|+|..|+...++
T Consensus        45 ~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~k  108 (127)
T 4gcn_A           45 YNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHR  108 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            33344556789999999999999999876 332       344578888999999999988765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=88.25  E-value=1.1  Score=35.28  Aligned_cols=60  Identities=12%  Similarity=0.166  Sum_probs=42.1

Q ss_pred             hhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCCh-HHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           39 SSAIFFADKIAALTN-DPTGVYMQAQALFLGRHY-RRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        39 ~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy-~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      +.|+-..+++....+ ++.-.+.+|.+++..|+| ..|...+++. .+...++...+..|.|+
T Consensus        85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  147 (474)
T 4abn_A           85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVY  147 (474)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            334444455555554 567889999999999999 9999988763 33355667777777765

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=88.23  E-value=1.6  Score=30.09  Aligned_cols=59  Identities=12%  Similarity=0.046  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC---C----chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN---D----PTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~---~----~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ..-+..+..-+...+.|+.|+-+.++.+.+..   +    +.-.+.+|.+++..|++..|...+++
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  108 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR  108 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            34455667778889999999999999888742   2    23567889999999999999987765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=88.22  E-value=2.3  Score=33.08  Aligned_cols=74  Identities=4%  Similarity=-0.092  Sum_probs=58.0

Q ss_pred             HHHhCC-chhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-----hhHHH
Q 042077           32 CVSKHL-YSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-----FNEKY  103 (109)
Q Consensus        32 ~L~~h~-Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-----~~~al  103 (109)
                      +...+. |+.|+=+.+|++.+.+ ++.--+.+|.++...|+|..|+..+++. .+..++..+.+-.|.++     |++|+
T Consensus       141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl  220 (382)
T 2h6f_A          141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL  220 (382)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence            345676 9999999999999997 6778889999999999999999988774 34456666666666654     56666


Q ss_pred             hh
Q 042077          104 LE  105 (109)
Q Consensus       104 ~~  105 (109)
                      ..
T Consensus       221 ~~  222 (382)
T 2h6f_A          221 QY  222 (382)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=87.99  E-value=4.4  Score=28.95  Aligned_cols=61  Identities=11%  Similarity=-0.028  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCCch-------hHHHHHHHHhhcCChHHHHHHHhc
Q 042077           20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTNDPT-------GVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~-------dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +.++.+...+..++.++.|+.|+=+.++.+...+...       -.+.+|.++...|+|..|...+++
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  140 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKK  140 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            3456677788889999999999999999888765322       245678888999999999997654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=87.90  E-value=1.2  Score=29.12  Aligned_cols=56  Identities=5%  Similarity=-0.161  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC---Cch----hHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN---DPT----GVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~---~~~----dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+-.-+...+.|+.|+-+.++.+.+..   ++.    ....+|.+++..|++..|...+++
T Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  172 (203)
T 3gw4_A          110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR  172 (203)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            44445566778999999999999887753   222    236889999999999999887765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=87.88  E-value=2.8  Score=30.16  Aligned_cols=57  Identities=11%  Similarity=0.044  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cc----hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN-DP----TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~----~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .+...-..+...+.|+.|+=+.++++.+.+ ++    .-.+.+|.+++..|+|..|...+++
T Consensus        11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   72 (406)
T 3sf4_A           11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH   72 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            344555667788999999999999998876 33    3456789999999999999887654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=87.55  E-value=0.73  Score=31.96  Aligned_cols=68  Identities=21%  Similarity=0.180  Sum_probs=49.7

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcC----ChHHHHHHHhcCCCCCCChhhHHHHhhcc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGR----HYRRPFHLLNASKIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~g----qy~RA~~LL~~~~L~~~~~~crYLaA~c~   98 (109)
                      +-.-+...+.++.|+-|-+|.... ++++..+.||.+|.. |    ++.+|...+++. ....++...+-.|.++
T Consensus        24 lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A-~~~g~~~a~~~Lg~~y   95 (212)
T 3rjv_A           24 LADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAEKA-VEAGSKSGEIVLARVL   95 (212)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHH
Confidence            334445578999999999997654 678889999999888 6    899999988774 2345566666666554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=87.52  E-value=2.4  Score=29.56  Aligned_cols=50  Identities=6%  Similarity=0.191  Sum_probs=29.6

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhh----cCChHHHHHHHhc
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFL----GRHYRRPFHLLNA   80 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~----~gqy~RA~~LL~~   80 (109)
                      ..+...+.++.|+-+-+|.+. .+++...+.||.+|+.    .|++..|...+++
T Consensus        14 ~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~   67 (273)
T 1ouv_A           14 AKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAK   67 (273)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHH
Confidence            344455666666666666555 3345556666666666    6666666665554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=86.75  E-value=3.3  Score=29.87  Aligned_cols=57  Identities=7%  Similarity=-0.109  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcCCchh--------HHHHHHHHhhcCChHHHHHHHhcC
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTNDPTG--------VYMQAQALFLGRHYRRPFHLLNAS   81 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~~~d--------v~lLAq~~y~~gqy~RA~~LL~~~   81 (109)
                      +..+-.-+..++.|+.|+-+-++++.+.++..+        .+-++.|+...|++..|...+++.
T Consensus       161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  225 (292)
T 1qqe_A          161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG  225 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455566677889999999999999998864332        356889999999999999998874

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=86.61  E-value=1.7  Score=36.05  Aligned_cols=64  Identities=8%  Similarity=-0.107  Sum_probs=33.1

Q ss_pred             HhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           34 SKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        34 ~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ..+.|+. +=+-+|++.+.+ +++..+.+|.++...|++..|...+++. .+...+...++-.|.++
T Consensus       513 ~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          513 LAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            3444444 444555555554 3445556666666666666666666553 22223334444444444

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=85.66  E-value=2.8  Score=33.32  Aligned_cols=60  Identities=13%  Similarity=0.266  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhc----C--Cch---hHHHHHHHHhhcCChHHHHHHHhc
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALT----N--DPT---GVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als----~--~~~---dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..-+..+..-+.+++.|+.|+-+..|++.+.    |  .|+   ..+-||.+|...|+|..|..++++
T Consensus       328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~  396 (429)
T 3qwp_A          328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL  396 (429)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            44556666777889999999999999999875    2  333   677899999999999999998876

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=85.45  E-value=3.4  Score=29.66  Aligned_cols=56  Identities=5%  Similarity=-0.018  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cch------hHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPT------GVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~------dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+-.-+...+.|+.|+=+.++.+.+.+ .++      ..+.+|.+++..|++..|...+++
T Consensus       190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  252 (406)
T 3sf4_A          190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK  252 (406)
T ss_dssp             HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            44455567778999999999999888864 222      667889999999999999888765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=85.33  E-value=0.2  Score=29.94  Aligned_cols=53  Identities=13%  Similarity=-0.004  Sum_probs=37.7

Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHhhcCC-------chhHHHHHHHHhhcCChHHHHHHHh
Q 042077           27 GLVRDCVSKHLYSSAIFFADKIAALTND-------PTGVYMQAQALFLGRHYRRPFHLLN   79 (109)
Q Consensus        27 ~~v~~~L~~h~Y~tAiF~ADKl~als~~-------~~dv~lLAq~~y~~gqy~RA~~LL~   79 (109)
                      .+-.-+...+.|+.|+-+.+|.+.+.++       +.-.+.+|.++...|++..|...++
T Consensus        43 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           43 NKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            3444567789999999999999999875       3445666667666666665554443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=85.26  E-value=1.6  Score=31.29  Aligned_cols=56  Identities=7%  Similarity=0.001  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcCC-------chhHHHHHHHHhhcCChHHH-HHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTND-------PTGVYMQAQALFLGRHYRRP-FHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~-------~~dv~lLAq~~y~~gqy~RA-~~LL~~   80 (109)
                      +..+-.-+..++.|+.|+-+.+|.+.+..+       ..--+.+|.+|+..|++..| ...+++
T Consensus       199 ~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            444555677899999999999998887642       23457889999999999999 655554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=85.10  E-value=4.7  Score=31.47  Aligned_cols=59  Identities=7%  Similarity=-0.083  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +.-+..++...+..+.+..|+-++.++++..+ +..-...|-.+|+++|+...|....++
T Consensus       171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~  230 (388)
T 2ff4_A          171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR  230 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44455666778889999999999999999998 555677788999999999888776553

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=84.74  E-value=3  Score=30.44  Aligned_cols=56  Identities=5%  Similarity=-0.044  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcCC-ch------hHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTND-PT------GVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~-~~------dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+-.-+...+.|+.|+-+.++.+.+.++ ++      ..+.+|.+|+..|++..|...+++
T Consensus       226 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  288 (411)
T 4a1s_A          226 CGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR  288 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            334455677889999999999999888752 22      567899999999999999988865

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=84.53  E-value=2.1  Score=27.87  Aligned_cols=58  Identities=5%  Similarity=-0.129  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC---C----chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN---D----PTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~---~----~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .-+..+-.-+...+.|+.|+-+.++.+.+..   +    ..-.+.+|.+++..|++..|...+++
T Consensus        27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   91 (203)
T 3gw4_A           27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE   91 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3455566667889999999999999888653   2    23567889999999999999887765

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=83.95  E-value=3.2  Score=23.46  Aligned_cols=44  Identities=16%  Similarity=0.029  Sum_probs=34.6

Q ss_pred             HHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcC
Q 042077           26 RGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGR   69 (109)
Q Consensus        26 R~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~g   69 (109)
                      ..+-.-+...+.|+.|+-+.+|++.+.+ ++...+.+|.++...|
T Consensus        47 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           47 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            3444556778999999999999999987 6677788888887654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=83.81  E-value=2.8  Score=27.35  Aligned_cols=44  Identities=11%  Similarity=0.084  Sum_probs=24.7

Q ss_pred             CCchhHHHHHHHHHhhcCCchhHHHHHHHHhh----cCChHHHHHHHhc
Q 042077           36 HLYSSAIFFADKIAALTNDPTGVYMQAQALFL----GRHYRRPFHLLNA   80 (109)
Q Consensus        36 h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~----~gqy~RA~~LL~~   80 (109)
                      ..++.|+-|-.|.... +++...+.||.+|+.    .+++.+|...+++
T Consensus        39 ~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~   86 (138)
T 1klx_A           39 INKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSK   86 (138)
T ss_dssp             SCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence            3344455555555443 455566666666665    5566666665554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=83.76  E-value=4.1  Score=32.65  Aligned_cols=59  Identities=8%  Similarity=-0.002  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhc----C--Cch---hHHHHHHHHhhcCChHHHHHHHhc
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALT----N--DPT---GVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als----~--~~~---dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ..-+..+-.-+.+++.|+.|+-+.+|.+.+.    |  .|+   ..+-||.+|...|+|..|..++++
T Consensus       340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~  407 (433)
T 3qww_A          340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKK  407 (433)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            3445556667788999999999999998875    2  233   567799999999999999998876

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=83.70  E-value=3.7  Score=30.39  Aligned_cols=53  Identities=11%  Similarity=0.123  Sum_probs=43.4

Q ss_pred             HHHHHHHhCCchhHHHHHHHHHhhc---CC---chhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           28 LVRDCVSKHLYSSAIFFADKIAALT---ND---PTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        28 ~v~~~L~~h~Y~tAiF~ADKl~als---~~---~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +-.-+..++.|+.|+-+-++.+.+.   ++   +...+.+|.+++..|++..|...+++
T Consensus       228 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  286 (378)
T 3q15_A          228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEE  286 (378)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4445567899999999999998854   22   44688999999999999999998876

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=83.23  E-value=3.4  Score=30.46  Aligned_cols=49  Identities=14%  Similarity=0.167  Sum_probs=24.3

Q ss_pred             HHHhCCchhHHHHHHHHHhhcC---C-c---hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           32 CVSKHLYSSAIFFADKIAALTN---D-P---TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        32 ~L~~h~Y~tAiF~ADKl~als~---~-~---~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..++.|+.|+-+.++.+.+..   + |   ...+.+|.+++..|++..|...+++
T Consensus       234 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  289 (383)
T 3ulq_A          234 KNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK  289 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3445555555555555555421   1 1   2344555555555555555554443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=82.30  E-value=4.9  Score=32.72  Aligned_cols=60  Identities=10%  Similarity=0.053  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhc----C--Cch---hHHHHHHHHhhcCChHHHHHHHhc
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALT----N--DPT---GVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als----~--~~~---dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..-+-.+..-+.+++.|+.|+-+.+|.+.+.    |  .|+   ...-||.+|...|+|..|..++++
T Consensus       350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~  418 (490)
T 3n71_A          350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICK  418 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34445556666778999999999999998885    2  233   567799999999999999988775

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=82.17  E-value=5.1  Score=27.83  Aligned_cols=45  Identities=11%  Similarity=0.182  Sum_probs=22.8

Q ss_pred             hCCchhHHHHHHHHHhhcCCchhHHHHHHHHhh----cCChHHHHHHHhc
Q 042077           35 KHLYSSAIFFADKIAALTNDPTGVYMQAQALFL----GRHYRRPFHLLNA   80 (109)
Q Consensus        35 ~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~----~gqy~RA~~LL~~   80 (109)
                      .+.++.|+-|-+|.+.+. ++...+.||.+|+.    .|++..|...+++
T Consensus        55 ~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~  103 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQYYSK  103 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCcccCHHHHHHHHHH
Confidence            445555555555544442 44455555555555    5555555554443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=81.56  E-value=4.9  Score=29.57  Aligned_cols=56  Identities=11%  Similarity=0.109  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcCC-c------hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTND-P------TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~~-~------~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +..+-.-+...+.|+.|+-+-+|.+.+.+. +      ...+-+|.+|+..|+|..|...+++
T Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~  249 (383)
T 3ulq_A          187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR  249 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            334445567789999999999999988752 1      2567799999999999999987765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.49
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.46
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.41
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.25
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.97
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.42
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.39
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.3
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.18
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	95.88
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	95.88
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.76
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	95.67
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	95.65
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	95.57
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	95.4
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.35
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.1
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.05
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	94.99
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	94.92
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	94.65
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	94.52
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	94.29
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	94.14
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	93.99
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	92.33
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	91.32
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	90.48
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	90.39
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	89.6
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	88.39
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	88.06
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	86.48
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	82.89

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00025  Score=44.97  Aligned_cols=85  Identities=11%  Similarity=0.000  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-   98 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-   98 (109)
                      ++.|+..-..++..+.|+.|+-.-++++...+ ++.--+.+|.||+..|+|..|+....+. .+.+.++..-+-.|.|+ 
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            56788888999999999999999999999998 6777888999999999999999987663 33456667767777765 


Q ss_pred             ----hhHHHhhh
Q 042077           99 ----FNEKYLEI  106 (109)
Q Consensus        99 ----~~~al~~~  106 (109)
                          |++|+...
T Consensus        83 ~~~~~~~A~~~~   94 (117)
T d1elwa_          83 FLNRFEEAKRTY   94 (117)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HccCHHHHHHHH
Confidence                55665443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.46  E-value=0.00015  Score=45.77  Aligned_cols=78  Identities=8%  Similarity=-0.008  Sum_probs=64.1

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-----hhHH
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-----FNEK  102 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-----~~~a  102 (109)
                      ..+..++.|+.|+..-+|++...+ +++.-+.+|.|+...|++..|...+++. .+.+.++...+..|.|+     +++|
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A  103 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA  103 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHH
Confidence            356779999999999999999998 6788899999999999999999988873 44456677777778776     5667


Q ss_pred             Hhhhh
Q 042077          103 YLEIE  107 (109)
Q Consensus       103 l~~~~  107 (109)
                      +..++
T Consensus       104 ~~~l~  108 (112)
T d1hxia_         104 LASLR  108 (112)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=0.00066  Score=44.57  Aligned_cols=83  Identities=7%  Similarity=0.035  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc--
Q 042077           23 EKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN--   98 (109)
Q Consensus        23 ~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~--   98 (109)
                      +.|...=..+...+.|+.|+-+-+|.+.+.+ ++.-.+-+|.||+..|+|..|+..+++. .+.+.++.+.+-.|.++  
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            5566667778889999999999999999987 6666778899999999999999988774 45566777777777765  


Q ss_pred             ---hhHHHhh
Q 042077           99 ---FNEKYLE  105 (109)
Q Consensus        99 ---~~~al~~  105 (109)
                         |++|+..
T Consensus        85 l~~~~~A~~~   94 (201)
T d2c2la1          85 MESYDEAIAN   94 (201)
T ss_dssp             TTCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence               4555443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00089  Score=43.81  Aligned_cols=84  Identities=15%  Similarity=0.154  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc-
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN-   98 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~-   98 (109)
                      .+.|+..=..+..++.|+.|+=+-.|++.+.+ ++..-+-+|.|++..|++..|...+++. .+...++...+..|.|+ 
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            45666777788889999999999999998887 5667778899999999999998877753 33455665556666654 


Q ss_pred             ----hhHHHhh
Q 042077           99 ----FNEKYLE  105 (109)
Q Consensus        99 ----~~~al~~  105 (109)
                          |++|+..
T Consensus        90 ~~g~~~eA~~~  100 (159)
T d1a17a_          90 ALGKFRAALRD  100 (159)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HcCCHHHHHHH
Confidence                5555543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0021  Score=42.94  Aligned_cols=68  Identities=12%  Similarity=0.104  Sum_probs=58.1

Q ss_pred             HHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           31 DCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        31 ~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      -++..+.|+.|+-+.++++.+.| ++.-.+.+|.||+..|+|..|...+++. .+.+.++..+...+.+.
T Consensus        71 ~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          71 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            36789999999999999999998 7889999999999999999999998874 44456777777776653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0093  Score=40.02  Aligned_cols=83  Identities=10%  Similarity=-0.120  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc---
Q 042077           24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN---   98 (109)
Q Consensus        24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~---   98 (109)
                      -+-..-.-+..++.|+.|+=.-+|.+.+.+ +++..+.+|.||...|++..|+..+++. .+.+.++...+-.|.|+   
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  118 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG  118 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHH
Confidence            343444567789999999999999999997 6777789999999999999999988763 22334444444445543   


Q ss_pred             --hhHHHhhh
Q 042077           99 --FNEKYLEI  106 (109)
Q Consensus        99 --~~~al~~~  106 (109)
                        +++|....
T Consensus       119 g~~~~A~~~~  128 (259)
T d1xnfa_         119 GRDKLAQDDL  128 (259)
T ss_dssp             TCHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence              45554443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0041  Score=43.24  Aligned_cols=69  Identities=4%  Similarity=-0.074  Sum_probs=54.8

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ..++.++.|+.|+-.-+|++...| +++..+.+|.|++..|++..|...+.+. .+.+.++...+..|.++
T Consensus        27 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   97 (323)
T d1fcha_          27 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF   97 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence            346779999999999999999887 6778899999999999999999887663 23345666666666654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0064  Score=41.70  Aligned_cols=68  Identities=10%  Similarity=-0.041  Sum_probs=42.8

Q ss_pred             HHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           31 DCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        31 ~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      .+...+.|+.|+=..++++...| +++-.+.+|.+++..|+|..|...+++. .+.+.++...+..|.++
T Consensus         8 ~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~   77 (388)
T d1w3ba_           8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY   77 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            34556777777777777777665 4556677777777777777777776652 12234444445555543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.18  E-value=0.013  Score=38.33  Aligned_cols=67  Identities=13%  Similarity=0.103  Sum_probs=51.9

Q ss_pred             HHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077           31 DCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK   97 (109)
Q Consensus        31 ~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c   97 (109)
                      -++..+.|+.|+...++++.+.+ ++...+.+|.+|+..|+|..|...+++. .+.+.+.......++|
T Consensus        86 ~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~  154 (169)
T d1ihga1          86 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV  154 (169)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34567999999999999999997 7889999999999999999999988763 2333444444444444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.88  E-value=0.0073  Score=39.47  Aligned_cols=68  Identities=18%  Similarity=0.130  Sum_probs=53.6

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK   97 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c   97 (109)
                      .-++..+.|+.|+-.+++++.+.| ++...|.+|.||+..|+|..|...+++. .+.+.+..-+...+.|
T Consensus        75 ~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~  144 (153)
T d2fbna1          75 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            335778999999999999999998 7789999999999999999999988773 2333444444444443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=95.88  E-value=0.0097  Score=39.26  Aligned_cols=66  Identities=17%  Similarity=0.226  Sum_probs=53.3

Q ss_pred             HHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077           32 CVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK   97 (109)
Q Consensus        32 ~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c   97 (109)
                      ++..+.|+.|+-++++++.+.+ ++...|.+|+||+..|+|..|...+++. .+.+.+....-..+.|
T Consensus        74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC  141 (168)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4678999999999999999987 7789999999999999999999988773 3344555554444444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.01  Score=37.56  Aligned_cols=56  Identities=23%  Similarity=0.200  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           25 LRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        25 LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .+..=..+...+.|+.|+-.=+|.+.+.| ++.-.+-+|.||+..|+|..|+..+.+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~   63 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK   63 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHH
Confidence            44444567889999999999999999998 566666799999999999999998765

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.04  Score=36.32  Aligned_cols=85  Identities=8%  Similarity=0.029  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-Cc--h------------hHH-HHHHHHhhcCChHHHHHHHhcC-CCC
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DP--T------------GVY-MQAQALFLGRHYRRPFHLLNAS-KIV   84 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~--~------------dv~-lLAq~~y~~gqy~RA~~LL~~~-~L~   84 (109)
                      ...++..=..+..++.|+.|+-+=.|.+...+ .+  .            .+| -+|.||+..|+|.+|+..+++. .+.
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            34444444568889999999999999887754 11  1            222 3899999999999999988763 334


Q ss_pred             CCChhhHHHHhhcc-----hhHHHhhh
Q 042077           85 PRDLRFRYLAEQKN-----FNEKYLEI  106 (109)
Q Consensus        85 ~~~~~crYLaA~c~-----~~~al~~~  106 (109)
                      +.++.+.+..|.|+     |++|+..+
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~  119 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADF  119 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHH
Confidence            67889999999887     45555543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.65  E-value=0.01  Score=38.46  Aligned_cols=52  Identities=10%  Similarity=0.036  Sum_probs=45.7

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      -.-++..+.|+.|+-..+|.+.+.+ ++...+.+|.+|+..|+|..|+..+++
T Consensus        45 g~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~   97 (201)
T d2c2la1          45 ALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR   97 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3447889999999999999999987 566778899999999999999988875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.029  Score=38.18  Aligned_cols=69  Identities=9%  Similarity=-0.089  Sum_probs=41.3

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhc
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQK   97 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c   97 (109)
                      ..-+...+.|+.|+-+-+|++.+.+ ++...+.+|.+|+..|++..|...+++. .+.+.++...+-.|.+
T Consensus       312 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~  382 (388)
T d1w3ba_         312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT  382 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3445566777777777777776665 4455566777777777777777766553 3333444444433433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=95.40  E-value=0.05  Score=35.58  Aligned_cols=85  Identities=11%  Similarity=0.118  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-C--c--h----------hHHH-HHHHHhhcCChHHHHHHHhcC-CC
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-D--P--T----------GVYM-QAQALFLGRHYRRPFHLLNAS-KI   83 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~--~--~----------dv~l-LAq~~y~~gqy~RA~~LL~~~-~L   83 (109)
                      ..+.++..=..+...+.|..|+-.=++.+.+.+ .  .  +          .+|. +|.||+..|+|..|+...++. .+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            367788888889999999999999999887653 1  1  1          1222 899999999999999987763 34


Q ss_pred             CCCChhhHHHHhhcc-----hhHHHhh
Q 042077           84 VPRDLRFRYLAEQKN-----FNEKYLE  105 (109)
Q Consensus        84 ~~~~~~crYLaA~c~-----~~~al~~  105 (109)
                      .+.++.+.|..|+|+     |++|...
T Consensus        94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~  120 (168)
T d1kt1a1          94 DSANEKGLYRRGEAQLLMNEFESAKGD  120 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            567888889889887     4455443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.033  Score=38.43  Aligned_cols=70  Identities=13%  Similarity=-0.013  Sum_probs=53.5

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      ..-+...+.++.|+=+-++.+...+ +++-.+.+|.+|+..|++..|....++. .+.+.++...+-.|.|+
T Consensus       179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  250 (323)
T d1fcha_         179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  250 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            3445678899999999999999887 4556678999999999999999887652 22345666666667665

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.041  Score=34.06  Aligned_cols=64  Identities=16%  Similarity=0.036  Sum_probs=52.1

Q ss_pred             HHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHH
Q 042077           29 VRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRY   92 (109)
Q Consensus        29 v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crY   92 (109)
                      -.-++.++.|+.|+-..++.+.+.+ ++..-+.+|.|+...|+|..|+..+++. .+.+.++....
T Consensus        44 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  109 (117)
T d1elwa_          44 SAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE  109 (117)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             cccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3445678999999999999999987 7889999999999999999999988773 33445554443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.019  Score=34.78  Aligned_cols=54  Identities=7%  Similarity=0.081  Sum_probs=43.6

Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHhhcC-Cc-------hhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           27 GLVRDCVSKHLYSSAIFFADKIAALTN-DP-------TGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        27 ~~v~~~L~~h~Y~tAiF~ADKl~als~-~~-------~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .+=.-+.+++.|+.|+-|=++.+.+.+ ++       +-.+-||.|++..|+|.+|+...++
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~   71 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK   71 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHH
Confidence            344567789999999999999988763 21       2356699999999999999998776

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.99  E-value=0.068  Score=36.09  Aligned_cols=61  Identities=7%  Similarity=-0.059  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           20 EEIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        20 ~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      ..++-+..+..-++..+.|+.|+-++++++.+.+ ++.--..|+.+|+..|++..|+...++
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~  126 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR  126 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3456667778889999999999999999999998 555677789999999999999877665

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.058  Score=34.57  Aligned_cols=75  Identities=16%  Similarity=0.133  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      -+..+-.-++..+.++.|+=..+|.+.+.+ ++...+.+|.|++..|+|..|...+++. .+...++.+....++|.
T Consensus        46 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          46 YYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             hhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            344555667889999999999999999997 6678899999999999999999977763 23345566666666553

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.65  E-value=0.045  Score=33.71  Aligned_cols=54  Identities=15%  Similarity=-0.050  Sum_probs=47.6

Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           27 GLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        27 ~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .+-.-+...+.++.|+-+-+|.+.+.+ +++..+-||.+|...|++..|...+++
T Consensus        55 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~  109 (112)
T d1hxia_          55 SLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHH
Confidence            334446788999999999999999998 678889999999999999999999876

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.52  E-value=0.17  Score=32.44  Aligned_cols=83  Identities=12%  Similarity=0.092  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHhhcC---C-chh------------HH-HHHHHHhhcCChHHHHHHHhcC-CCCC
Q 042077           24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN---D-PTG------------VY-MQAQALFLGRHYRRPFHLLNAS-KIVP   85 (109)
Q Consensus        24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~---~-~~d------------v~-lLAq~~y~~gqy~RA~~LL~~~-~L~~   85 (109)
                      .++.-=..+..++.|..|+-.=.+.+..-+   + ++.            +| =+|.||+..|+|..|+...++. .+.+
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p   98 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK   98 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence            344445677889999999966677665543   1 111            12 2899999999999999988763 3446


Q ss_pred             CChhhHHHHhhcc-----hhHHHhhh
Q 042077           86 RDLRFRYLAEQKN-----FNEKYLEI  106 (109)
Q Consensus        86 ~~~~crYLaA~c~-----~~~al~~~  106 (109)
                      .++.+.|-.|+|+     |++|+...
T Consensus        99 ~~~ka~~~~g~~~~~lg~~~~A~~~~  124 (153)
T d2fbna1          99 NNVKALYKLGVANMYFGFLEEAKENL  124 (153)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hhhhhhHHhHHHHHHcCCHHHHHHHH
Confidence            7788888888876     55665543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.029  Score=37.85  Aligned_cols=66  Identities=5%  Similarity=-0.125  Sum_probs=42.7

Q ss_pred             HHHHhCCchhHHHHHHHHHhhcCCchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           31 DCVSKHLYSSAIFFADKIAALTNDPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        31 ~~L~~h~Y~tAiF~ADKl~als~~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      .+..++.|+.|+=.-+++  ..+++.-.|.+|.||+..|+|..|....++. .+.+.++..-+..|.|+
T Consensus        14 ~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            456677888887555542  1235566777888888888888888777653 33455565556666654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=94.14  E-value=0.033  Score=40.24  Aligned_cols=65  Identities=15%  Similarity=0.088  Sum_probs=52.5

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHH
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLA   94 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLa   94 (109)
                      +++|.++.++.|+=..++.+...+ +++-...|+++|...|++.+|...++.. .+...+..-.+..
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l   70 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL   70 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            578899999999999999999997 7789999999999999999999988763 2233344433333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.097  Score=33.21  Aligned_cols=54  Identities=17%  Similarity=0.033  Sum_probs=31.3

Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCCh---HHHHHHHhc
Q 042077           27 GLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHY---RRPFHLLNA   80 (109)
Q Consensus        27 ~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy---~RA~~LL~~   80 (109)
                      .++...++...++.|.-.=.|.+.+.+ +++-.|-+|.|++.+++.   .+|+.++++
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~   61 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEE   61 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            344455555666666666666666665 556666666666654433   346666654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.33  E-value=0.58  Score=29.90  Aligned_cols=85  Identities=13%  Similarity=0.132  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHhhcC--------------Cch---hHHHHHHHHhhcCChHHHHHHHhcC-C
Q 042077           21 EIEKLRGLVRDCVSKHLYSSAIFFADKIAALTN--------------DPT---GVYMQAQALFLGRHYRRPFHLLNAS-K   82 (109)
Q Consensus        21 ~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~--------------~~~---dv~lLAq~~y~~gqy~RA~~LL~~~-~   82 (109)
                      ..+.++.........+.|..|+-.-.|.+.+.+              +|.   -..-+|.|++..|+|..|+...++. .
T Consensus        26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  105 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  105 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence            456677778888899999999888777665421              122   2234799999999999999987764 4


Q ss_pred             CCCCChhhHHHHhhcc-----hhHHHhh
Q 042077           83 IVPRDLRFRYLAEQKN-----FNEKYLE  105 (109)
Q Consensus        83 L~~~~~~crYLaA~c~-----~~~al~~  105 (109)
                      +.+.++...+-.|.|+     |++|+..
T Consensus       106 ~~p~~~~a~~~~g~~~~~l~~~~~A~~~  133 (169)
T d1ihga1         106 IDPSNTKALYRRAQGWQGLKEYDQALAD  133 (169)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhhhhhHHHhHHHHHHHccCHHHHHHH
Confidence            4567777778788776     4555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=0.22  Score=33.20  Aligned_cols=51  Identities=6%  Similarity=-0.058  Sum_probs=43.7

Q ss_pred             HHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           30 RDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        30 ~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .-+...+.|+.|+=+-+|.+.+.+ .+.--+.+|.|++..|+|..|..-.++
T Consensus        44 ~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~k   95 (192)
T d1hh8a_          44 CMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE   95 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHH
Confidence            345789999999999999999987 667778899999999999999865544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=90.48  E-value=0.29  Score=32.34  Aligned_cols=57  Identities=12%  Similarity=0.043  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHhhcCC-ch-----hHHHHHHHHhhcCChHHHHHHHhc
Q 042077           22 IEKLRGLVRDCVSKHLYSSAIFFADKIAALTND-PT-----GVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        22 ~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als~~-~~-----dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +.-+|.  .-++.++.++.|+=+.++.+...++ +.     -...+|.+++..|++..|...+++
T Consensus        14 ~~~lrA--~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~   76 (366)
T d1hz4a_          14 FNALRA--QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQ   76 (366)
T ss_dssp             HHHHHH--HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            344444  3358899999999999999988763 22     345689999999999999998865

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=90.39  E-value=0.35  Score=31.75  Aligned_cols=54  Identities=17%  Similarity=-0.005  Sum_probs=46.3

Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           27 GLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        27 ~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      .+-.-+...+.|+.|+=.-+|++.+.+ ++...+-+|.+|+..|++..|...+++
T Consensus        76 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  130 (259)
T d1xnfa_          76 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA  130 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            344456788999999999999999997 677788899999999999999998875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.60  E-value=0.19  Score=31.77  Aligned_cols=58  Identities=10%  Similarity=0.183  Sum_probs=42.2

Q ss_pred             CchhHHHHHHHHHhhcCCch---hHHHHHHHHhhcCChHHHHHHHhcC-CCCCCChhhHHHH
Q 042077           37 LYSSAIFFADKIAALTNDPT---GVYMQAQALFLGRHYRRPFHLLNAS-KIVPRDLRFRYLA   94 (109)
Q Consensus        37 ~Y~tAiF~ADKl~als~~~~---dv~lLAq~~y~~gqy~RA~~LL~~~-~L~~~~~~crYLa   94 (109)
                      .++.|+=.-++++...++|.   ..|.||.||+..|+|.+|...+++. .+.+.+...+.+.
T Consensus        51 d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          51 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            34568888888887766443   4689999999999999999988874 3334555555444

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=88.39  E-value=0.57  Score=26.92  Aligned_cols=48  Identities=21%  Similarity=0.387  Sum_probs=43.0

Q ss_pred             CCCCCcccccchhhhHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhc
Q 042077            4 REPNIPLDLQFHNEKKEEIEKLRGLVRDCVSKHLYSSAIFFADKIAALT   52 (109)
Q Consensus         4 ~~~~~~~d~~~~~~~~~~~~~LR~~v~~~L~~h~Y~tAiF~ADKl~als   52 (109)
                      +.++++++.+...+ +..+..|+.-.+.+..+-.|+.|..+=|++-.+.
T Consensus         2 e~d~~~~~ls~~el-~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~   49 (56)
T d1e52a_           2 EPDNVPMDMSPKAL-QQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR   49 (56)
T ss_dssp             CCTTSSCCSCCSHH-HHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHH
T ss_pred             CCCcccccCCHHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            46788999999998 5789999999999999999999999999988764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.06  E-value=0.16  Score=31.69  Aligned_cols=57  Identities=12%  Similarity=0.174  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHhhcC-CchhHH-------HHHHHHhhcCChHHHHHHHhc
Q 042077           24 KLRGLVRDCVSKHLYSSAIFFADKIAALTN-DPTGVY-------MQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        24 ~LR~~v~~~L~~h~Y~tAiF~ADKl~als~-~~~dv~-------lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      -+..+-.-+...+.|+.|+.+.++.+.+.+ ++..-+       -+|.++...|+|..|+...++
T Consensus        40 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~k  104 (128)
T d1elra_          40 YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK  104 (128)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            345556667788999999999999999986 454333       456677788888888888765

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.48  E-value=0.28  Score=29.17  Aligned_cols=27  Identities=4%  Similarity=0.103  Sum_probs=23.8

Q ss_pred             CchhHHHHHHHHhhcCChHHHHHHHhc
Q 042077           54 DPTGVYMQAQALFLGRHYRRPFHLLNA   80 (109)
Q Consensus        54 ~~~dv~lLAq~~y~~gqy~RA~~LL~~   80 (109)
                      +++|.|-+|.++|..|+|..|+..+++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~   30 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQ   30 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            578999999999999999999887654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.89  E-value=0.55  Score=29.90  Aligned_cols=62  Identities=10%  Similarity=0.059  Sum_probs=45.2

Q ss_pred             CchhHHHHHHHHHhhcC-CchhHHHHHHHHhhcCChH----------HHHHHHhcC-CCCCCChhhHHHHhhcc
Q 042077           37 LYSSAIFFADKIAALTN-DPTGVYMQAQALFLGRHYR----------RPFHLLNAS-KIVPRDLRFRYLAEQKN   98 (109)
Q Consensus        37 ~Y~tAiF~ADKl~als~-~~~dv~lLAq~~y~~gqy~----------RA~~LL~~~-~L~~~~~~crYLaA~c~   98 (109)
                      .|+.|+=..+|++.+.| +++..+.+|.+++..+++.          .|+...++. .+.+.++.+.|-.|.++
T Consensus        12 ~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1          12 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            48889999999999998 7788889999999776664          455555442 33456666766666655