Citrus Sinensis ID: 042098
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 566 | 2.2.26 [Sep-21-2011] | |||||||
| O64705 | 621 | Pentatricopeptide repeat- | yes | no | 0.938 | 0.855 | 0.565 | 0.0 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.966 | 0.741 | 0.34 | 1e-107 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.943 | 0.784 | 0.365 | 1e-106 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.980 | 0.748 | 0.358 | 1e-105 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.927 | 0.756 | 0.362 | 1e-104 | |
| Q9SZK1 | 559 | Pentatricopeptide repeat- | no | no | 0.924 | 0.935 | 0.387 | 1e-103 | |
| Q9SR82 | 685 | Putative pentatricopeptid | no | no | 0.938 | 0.775 | 0.351 | 1e-102 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.941 | 0.764 | 0.348 | 1e-100 | |
| Q9MA95 | 565 | Putative pentatricopeptid | no | no | 0.931 | 0.932 | 0.358 | 3e-96 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.929 | 0.728 | 0.333 | 5e-94 |
| >sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/548 (56%), Positives = 402/548 (73%), Gaps = 17/548 (3%)
Query: 23 LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
L L LLKKC S ++QI QML++ ++KPNFL+ + ++L DFNY+S LF PN
Sbjct: 36 LERDFLFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPN 95
Query: 83 EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
Y+FN MIRGLT W + +L LY +MK GLKPD FTY FVFI+CA L + G SVH
Sbjct: 96 HYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVH 155
Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
SS+FK+GL+ D H++HSLI MYA+CG++ ARK+FDEI ERD VSWNSMISGYS+ GYAK
Sbjct: 156 SSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAK 215
Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
+A++LF +M EE F PDE TLVS+LG+C LGDL G+ +E + K+ L+ ++GS LI
Sbjct: 216 DAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLI 275
Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
MYGKCG L ARRVF+ M+ KD V W AMIT Y+QNG S+EA LF M+ GV+PD
Sbjct: 276 SMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAG 335
Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
TL VLSAC S+GAL+LGK ++ +AS+ L+H+I+ CG +++AL+VFE M
Sbjct: 336 TLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAM 395
Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
PV NE +WNAMI+A A G A EALLLF+RMS P+D+TFIGVLSACVHAGLV +
Sbjct: 396 PVKNEATWNAMITAYAHQGHAKEALLLFDRMS-----VPPSDITFIGVLSACVHAGLVHQ 450
Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
G R F MSS FGL+PK EHY+ ++DL +RAG L EAW+F+ER P K DEI+L A+LGAC
Sbjct: 451 GCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGAC 510
Query: 492 QKQKNTDVSQRVMQLLLEI-ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
K+K+ + ++ M++L+E+ E+ N+GNYVISS + A++KMWD+SAKMRALMR++GV KTP
Sbjct: 511 HKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTP 570
Query: 551 GCSWIGID 558
GCSWI I+
Sbjct: 571 GCSWIEIE 578
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/600 (34%), Positives = 331/600 (55%), Gaps = 53/600 (8%)
Query: 10 RHLAFTELNDPSL--LREKLLSLLKKCPSTKTVQQIHTQMLIN------FIQKPNFLLIR 61
RH F+ N P+ R + +SL+++C S + ++Q H M+ + F +
Sbjct: 14 RHPNFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAA 73
Query: 62 IIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
+ YA +F +I +PN +A+N +IR + + P+ +T
Sbjct: 74 LSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYT 133
Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
+PF+ + A + +L+ G S+H K + D V++SLI Y CG LDSA KVF I+
Sbjct: 134 FPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 193
Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
E+D+VSWNSMI+G+ + G +A+ELF +M E+ +T+V VL +C + +L G+
Sbjct: 194 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253
Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-------------------- 281
V ++ +N++++N + +A++DMY KCG++ A+R+FDAM
Sbjct: 254 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 313
Query: 282 -----------VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKITLIGVLS 329
KD+V WNA+I+AY QNG NEA+++F+ ++ + ++ITL+ LS
Sbjct: 314 YEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLS 373
Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
ACA +GAL+LG+W+ Y + G+R + CG ++ + +VF + +
Sbjct: 374 ACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFV 433
Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
W+AMI LA +G +EA+ +F +M + +PN VTF V AC H GLVDE LF
Sbjct: 434 WSAMIGGLAMHGCGNEAVDMFYKMQE--ANVKPNGVTFTNVFCACSHTGLVDEAESLFHQ 491
Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTD 498
M S++G++P+ +HY+C+VD+ R+G+L +A F+E MP V GALLGAC+ N +
Sbjct: 492 MESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLN 551
Query: 499 VSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
+++ LLE+E N G +V+ S I+A L W++ +++R MR G+ K PGCS I ID
Sbjct: 552 LAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEID 611
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 215/588 (36%), Positives = 329/588 (55%), Gaps = 54/588 (9%)
Query: 22 LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLF 75
+L LLSLL+KC ++QI QM+IN + F R+I + + +Y+ +
Sbjct: 51 VLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKIL 110
Query: 76 HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL---KPDNFTYPFVFISCANL 132
I PN +++NV IRG + + + S LY QM R G +PD+FTYP +F CA+L
Sbjct: 111 KGIENPNIFSWNVTIRGFSES-ENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADL 169
Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
+ G + V K+ L+ HV ++ I M+A CG +++ARKVFDE RDLVSWN +I
Sbjct: 170 RLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLI 229
Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
+GY K+G A++A+ ++ M E PD++T++ ++ SC LGDL GK +V +N +
Sbjct: 230 NGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLR 289
Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL----------- 301
+ + +AL+DM+ KCG + ARR+FD + + +V+W MI+ YA+ GL
Sbjct: 290 MTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDM 349
Query: 302 --------------------SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
+A+ LF M+ + PD+IT+I LSAC+ +GALD+G
Sbjct: 350 EEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGI 409
Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
W+ +Y + L ++ CG+I +AL VF + N +++ A+I LA +G
Sbjct: 410 WIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHG 469
Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
A A+ F M G A P+++TFIG+LSAC H G++ GR F M S F L P+ +
Sbjct: 470 DASTAISYFNEMIDAGIA--PDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLK 527
Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
HYS MVDL RAG L EA +E MP + D V GALL C+ N ++ ++ + LLE+
Sbjct: 528 HYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLEL 587
Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
+ S+SG YV+ ++ MW+D+ + R +M E+GV K PGCS I ++
Sbjct: 588 DPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVN 635
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/611 (35%), Positives = 335/611 (54%), Gaps = 56/611 (9%)
Query: 1 MLLRAKAYSRHLAFTELNDP--SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFL 58
+ + + +Y H + + P S+ LSLL C + ++++ IH QM+ + N+
Sbjct: 8 LTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYA 67
Query: 59 LIRIIDL-------KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK 111
L ++I+ + YA +F I PN +N M RG + S +LKLY M
Sbjct: 68 LSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVS-ALKLYVCMI 126
Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
LGL P+++T+PFV SCA A G +H V K+G D D +V SLI+MY + G+L+
Sbjct: 127 SLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLE 186
Query: 172 SARKVFD-------------------------------EIRERDLVSWNSMISGYSKMGY 200
A KVFD EI +D+VSWN+MISGY++ G
Sbjct: 187 DAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGN 246
Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
KEA+ELF M + PDE T+V+V+ +C G + LG+ V ++ + N + +A
Sbjct: 247 YKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNA 306
Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
LID+Y KCG L A +F+ + KDV++WN +I Y L EA++LF M +G P+
Sbjct: 307 LIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 366
Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQR--------GLRHDIF-----CGSIDDALKV 367
+T++ +L ACA +GA+D+G+W+ Y +R LR + CG I+ A +V
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQV 426
Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
F + + SWNAMI A +GRA + LF RM K G +P+D+TF+G+LSAC H+G
Sbjct: 427 FNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG--IQPDDITFVGLLSACSHSG 484
Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
++D GR +F M+ + + PK EHY CM+DL +G EA + + M + D ++ +L
Sbjct: 485 MLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSL 544
Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
L AC+ N ++ + + L++IE N G+YV+ S I+A+ W++ AK RAL+ +KG+
Sbjct: 545 LKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMK 604
Query: 548 KTPGCSWIGID 558
K PGCS I ID
Sbjct: 605 KVPGCSSIEID 615
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/546 (36%), Positives = 323/546 (59%), Gaps = 21/546 (3%)
Query: 29 SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEY 84
SL+ ++QIH ++L+ +Q FL+ ++I D +A +F + RP +
Sbjct: 26 SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIF 85
Query: 85 AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
+N +IRG + + +L +Y M+ + PD+FT+P + +C+ L L G VH+
Sbjct: 86 PWNAIIRGYSRN-NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQ 144
Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD--EIRERDLVSWNSMISGYSKMGYAK 202
VF++G D D V + LI +YA+C +L SAR VF+ + ER +VSW +++S Y++ G
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPM 204
Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
EA+E+F +MR+ + PD + LVSVL + L DL G+ + VVK +++ + +L
Sbjct: 205 EALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLN 264
Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
MY KCG + A+ +FD M + +++ WNAMI+ YA+NG + EAI +F+ M V PD I
Sbjct: 265 TMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTI 324
Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
++ +SACA +G+L+ + + +Y + R D+F CGS++ A VF+
Sbjct: 325 SITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRT 384
Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
+ V W+AMI +GRA EA+ L+ M E G PNDVTF+G+L AC H+G+V E
Sbjct: 385 LDRDVVVWSAMIVGYGLHGRAREAISLYRAM--ERGGVHPNDVTFLGLLMACNHSGMVRE 442
Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
G F+ M+ + P+ +HY+C++DL RAGHL +A++ ++ MP + V GALL AC
Sbjct: 443 GWWFFNRMADH-KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSAC 501
Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
+K ++ ++ + Q L I+ SN+G+YV S ++A ++WD A++R M+EKG++K G
Sbjct: 502 KKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVG 561
Query: 552 CSWIGI 557
CSW+ +
Sbjct: 562 CSWVEV 567
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 213/549 (38%), Positives = 316/549 (57%), Gaps = 26/549 (4%)
Query: 27 LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDF-NYASLLFHQI-SR 80
LL L+ +C S + +QI TQ++ + + + ++ +++ DF +Y+S++ H I S
Sbjct: 9 LLELISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSIRSV 68
Query: 81 PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
+ +++N ++ K ++ Y G PD FT+P VF +C + G
Sbjct: 69 LSSFSYNTLLSSYAVC-DKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQ 127
Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
+H V K+G +D +V +SL+ Y CG+ +A KVF E+ RD+VSW +I+G+++ G
Sbjct: 128 IHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGL 187
Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
KEA++ F +M E P+ T V VL S G +G L LGK + G ++K ++ G+A
Sbjct: 188 YKEALDTFSKMDVE---PNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNA 244
Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY-AGVNP 319
LIDMY KC L A RVF + KD V+WN+MI+ S EAI LF+ M+ +G+ P
Sbjct: 245 LIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKP 304
Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
D L VLSACAS+GA+D G+WV +Y G++ D CG I+ AL++F
Sbjct: 305 DGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIF 364
Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
+ N +WNA++ LA +G E+L FE M K G +PN VTF+ L+AC H GL
Sbjct: 365 NGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLG--FKPNLVTFLAALNACCHTGL 422
Query: 429 VDEGRRLFDLMSS-SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
VDEGRR F M S + L PK EHY CM+DL RAG L EA + V+ MP K D + GA+
Sbjct: 423 VDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAI 482
Query: 488 LGACQKQKN-TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
L AC+ + ++ + ++ L+IE +SG YV+ S IFA + WDD A++R LM+ KG+
Sbjct: 483 LSACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGI 542
Query: 547 SKTPGCSWI 555
SK PG S+I
Sbjct: 543 SKVPGSSYI 551
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/549 (35%), Positives = 315/549 (57%), Gaps = 18/549 (3%)
Query: 25 EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFL----LIRIIDLKDFNYASLLFHQISR 80
+++ +L+ + ++QIH ++ + + FL L R + + Y+ LLF
Sbjct: 14 QQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQF 73
Query: 81 PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
PN + +N +I G + +L L+ +++ GL FT+P V +C + G+
Sbjct: 74 PNIFLYNSLINGFVNN-HLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGID 132
Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
+HS V K G + D SL+++Y+ G+L+ A K+FDEI +R +V+W ++ SGY+ G
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGR 192
Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
+EA++LF +M E PD +V VL +C +GDL G+W+ ++ + +M N ++ +
Sbjct: 193 HREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTT 252
Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
L+++Y KCG + AR VFD+MV KD+VTW+ MI YA N E I LF +M + PD
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPD 312
Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE 369
+ +++G LS+CAS+GALDLG+W + ++F CG++ +VF+
Sbjct: 313 QFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372
Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
+M + V NA IS LA NG + +F + K G P+ TF+G+L CVHAGL+
Sbjct: 373 EMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLG--ISPDGSTFLGLLCGCVHAGLI 430
Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
+G R F+ +S + L EHY CMVDL+ RAG L +A+ + MP + + IV GALL
Sbjct: 431 QDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLS 490
Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
C+ K+T +++ V++ L+ +E N+GNYV S I++ WD++A++R +M +KG+ K
Sbjct: 491 GCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKI 550
Query: 550 PGCSWIGID 558
PG SWI ++
Sbjct: 551 PGYSWIELE 559
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 204/585 (34%), Positives = 314/585 (53%), Gaps = 52/585 (8%)
Query: 22 LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
++ +L+ KC S + +Q+ +M I N ++ + L + A LF +
Sbjct: 56 FIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPER 115
Query: 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
++ +N M+ G + +L + M + G + +++ V +C+ L +N GV V
Sbjct: 116 DQCTWNSMVSGFAQH-DRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQV 174
Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
HS + K D ++ +L+ MY++CG ++ A++VFDE+ +R++VSWNS+I+ + + G A
Sbjct: 175 HSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPA 234
Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN-KMDLNFYMGSA 260
EA+++F M E PDE+TL SV+ +C L + +G+ V G VVKN K+ + + +A
Sbjct: 235 VEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNA 294
Query: 261 LIDMYGKCGALVPARRVFDAM-------------------------------VNKDVVTW 289
+DMY KC + AR +FD+M ++VV+W
Sbjct: 295 FVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSW 354
Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
NA+I Y QNG + EA+ LF +K V P + +L ACA + L LG + +
Sbjct: 355 NALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLK 414
Query: 350 RGLR------HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
G + DIF CG +++ VF M + VSWNAMI A NG
Sbjct: 415 HGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYG 474
Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
+EAL LF M + G +P+ +T IGVLSAC HAG V+EGR F M+ FG+ P +HY
Sbjct: 475 NEALELFREMLESG--EKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHY 532
Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
+CMVDL RAG L EA +E MP + D ++ G+LL AC+ +N + + V + LLE+E
Sbjct: 533 TCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEP 592
Query: 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
SNSG YV+ S ++A L W+D +R MR++GV+K PGCSWI I
Sbjct: 593 SNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKI 637
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 199/555 (35%), Positives = 304/555 (54%), Gaps = 28/555 (5%)
Query: 25 EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYASLLFHQ 77
+ +LS L+ C S + Q+H M+ + + + L R+ID + +YA +F
Sbjct: 7 KPILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFES 66
Query: 78 ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
I P+ Y +N MIRG + + +L Y +M R G PD FT+P+V +C+ L +
Sbjct: 67 IDCPSVYIWNSMIRGYSNSPNP-DKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQF 125
Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
G VH V K G + + +VS L+ MY CG+++ +VF++I + ++V+W S+ISG+
Sbjct: 126 GSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVN 185
Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV--------VKN 249
+A+E F M+ +E +V +L +CG D+V GKW GF+ ++
Sbjct: 186 NNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQS 245
Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
K+ N + ++LIDMY KCG L AR +FD M + +V+WN++IT Y+QNG + EA+ +F
Sbjct: 246 KVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMF 305
Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD--IFC--------- 358
M G+ PDK+T + V+ A G LG+ + Y S+ G D I C
Sbjct: 306 LDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKT 365
Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
G + A K FED+ + ++W +I LA +G +EAL +F+RM +E G A P+ +T++G
Sbjct: 366 GDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRM-QEKGNATPDGITYLG 424
Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
VL AC H GLV+EG+R F M GL P EHY CMVD+ +RAG EA V+ MP K
Sbjct: 425 VLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVK 484
Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
+ + GALL C +N +++ R+ ++ E E SG YV+ S I+A W D +R
Sbjct: 485 PNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIR 544
Query: 539 ALMREKGVSKTPGCS 553
M+ K V K G S
Sbjct: 545 ESMKSKRVDKVLGHS 559
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (885), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 192/576 (33%), Positives = 309/576 (53%), Gaps = 50/576 (8%)
Query: 27 LLSLLKKCPSTKTVQQIHTQMLINFI-QKPN---FLLIRIIDLKDFNYASLLFHQISRPN 82
+L L C S ++Q+H +L I K N F L + +YA +F I P
Sbjct: 15 ILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSPP 74
Query: 83 E-YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
E FN +R L+ + + + ++ Y +++ +G + D F++ + + + + AL G+ +
Sbjct: 75 ESIVFNPFLRDLSRSSEPRA-TILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMEL 133
Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
H FKI D V + MYA CG+++ AR VFDE+ RD+V+WN+MI Y + G
Sbjct: 134 HGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLV 193
Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN--KMDL------ 253
EA +LF M++ +PDE+ L +++ +CG G++ + + F+++N +MD
Sbjct: 194 DEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTAL 253
Query: 254 -----------------------NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
N ++ +A++ Y KCG L A+ +FD KD+V W
Sbjct: 254 VTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWT 313
Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
MI+AY ++ EA+ +F M +G+ PD +++ V+SACA++G LD KWV
Sbjct: 314 TMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN 373
Query: 351 GLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
GL ++ CG +D VFE MP N VSW++MI+AL+ +G A +AL LF
Sbjct: 374 GLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLF 433
Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
RM +E PN+VTF+GVL C H+GLV+EG+++F M+ + + PK EHY CMVDL+
Sbjct: 434 ARMKQEN--VEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLF 491
Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
RA L EA + +E MP + ++ G+L+ AC+ ++ + + +LE+E + G V
Sbjct: 492 GRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALV 551
Query: 520 ISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
+ S I+A + W+D +R +M EK V K G S I
Sbjct: 552 LMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRI 587
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 566 | ||||||
| 225446273 | 618 | PREDICTED: pentatricopeptide repeat-cont | 0.984 | 0.901 | 0.713 | 0.0 | |
| 224119830 | 617 | predicted protein [Populus trichocarpa] | 0.966 | 0.886 | 0.675 | 0.0 | |
| 449507426 | 619 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.898 | 0.659 | 0.0 | |
| 449461217 | 619 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.898 | 0.659 | 0.0 | |
| 87241511 | 609 | Tetratricopeptide-like helical [Medicago | 0.964 | 0.896 | 0.624 | 0.0 | |
| 357449413 | 702 | Pentatricopeptide repeat-containing prot | 0.964 | 0.777 | 0.624 | 0.0 | |
| 356499129 | 614 | PREDICTED: pentatricopeptide repeat-cont | 0.971 | 0.895 | 0.614 | 0.0 | |
| 356553819 | 608 | PREDICTED: pentatricopeptide repeat-cont | 0.941 | 0.876 | 0.622 | 0.0 | |
| 3128231 | 617 | hypothetical protein [Arabidopsis thalia | 0.938 | 0.860 | 0.565 | 0.0 | |
| 334184678 | 621 | pentatricopeptide repeat-containing prot | 0.938 | 0.855 | 0.565 | 0.0 |
| >gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Vitis vinifera] gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/568 (71%), Positives = 482/568 (84%), Gaps = 11/568 (1%)
Query: 3 LRAKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRI 62
L ++ +++ LA ++ + L +KLLSLLK+C STK++QQIHTQM+IN I KPNFLL R
Sbjct: 10 LISRHFTKALAKSQRHAQQTLTDKLLSLLKQCTSTKSLQQIHTQMIINAIHKPNFLLHRF 69
Query: 63 IDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
IDLKDFN ASLLF QI PNEYAFN+MIRGLTT WQK++ +++ YYQMK G++P+NFTY
Sbjct: 70 IDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTY 129
Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
PFVFI+CANLL LNHG HS V K GL D HV HSLITMY+RCG+L AR+VFDEI E
Sbjct: 130 PFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISE 189
Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
+DLVSWNSMISGYS+MGYA +AV LFG MR+ F PDE+TLVS+LG+CGDLGDL LG W+
Sbjct: 190 KDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWI 249
Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
EGFVV+N+MDLN ++GSALI MYGKCG L ARRVFD MV KDVVTWNAMIT YAQNG+S
Sbjct: 250 EGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVS 309
Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----- 357
+EAI+LF+ M+ +GVNPDKITL+GVLSACASIGALD GKW+D YAS+RGL++DI+
Sbjct: 310 DEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTAL 369
Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
CGS+DDAL+VFEDMP NEVSWNAMISALAF+GR E+L LF+RMSKEGGA RP
Sbjct: 370 IDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRP 429
Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
ND++FIGVLSACVHAGLVDEGR+LFDLMSSSFGL+PK EH+SCMVDL ARAGH+ EAWDF
Sbjct: 430 NDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDF 489
Query: 472 VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
+E+MPEK DE+VLGALLGACQK++N DVS+RVM +LLE+E NSGNY+ISSKIFAN+K W
Sbjct: 490 IEKMPEKPDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRW 549
Query: 532 DDSAKMRALMREKGVSKTPGCSWIGIDD 559
DDSA+MR LMR++GV+KTPGCSWI I++
Sbjct: 550 DDSARMRVLMRQRGVTKTPGCSWIEIEN 577
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa] gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/564 (67%), Positives = 462/564 (81%), Gaps = 17/564 (3%)
Query: 11 HLAFTELN------DPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID 64
HL + LN L EKLLSL+K+C S ++QIH QMLIN I KPNFLL +IID
Sbjct: 14 HLPLSNLNFQTQKEHHQTLTEKLLSLIKQCKSKNLLKQIHAQMLINSIPKPNFLLSKIID 73
Query: 65 LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
LKD YASL+F+Q+++PN YAFNVM+RGL T W+KY ++LYY++K LGLK +NFTYPF
Sbjct: 74 LKDLAYASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPF 133
Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
+FI+C N+ L HG H VFK GLD D++V+HSLITMYARCG++ ARKVFDE+ +RD
Sbjct: 134 LFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRD 193
Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
LVSWNSMISGYSKMG+ KEA+ LF MREE F PDE+TLVSVLG+CGDLGDL LG+WVEG
Sbjct: 194 LVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEG 253
Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
FV++ KM++N YMGSALIDMYGKCG L+ ARRVFD+M NKDVVTWNA+IT YAQNG SNE
Sbjct: 254 FVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNE 313
Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
AI+LFN M+ AG +PD++T+I VLSAC++IGALDLGKWV+ +AS++GL+HD++
Sbjct: 314 AIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALID 373
Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
CGS+DDA++VFE MP NEVSWNAMISALAF+G+A EAL LF RMSK+ G +PND
Sbjct: 374 MYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPND 433
Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
+TFIGVLSACVHAGLVDEGR+LF+ M+ SFGL+PK EHYSCMVDL ARAG L EAWD ++
Sbjct: 434 ITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIK 493
Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
+MP K DEIVLG+LLGACQ+++N DV +RV+QL LE+E SNSGNYVISSKI+AN++ WDD
Sbjct: 494 KMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELSNSGNYVISSKIYANMRRWDD 553
Query: 534 SAKMRALMREKGVSKTPGCSWIGI 557
SAKMR LMR+ GVSKTPGCSWI I
Sbjct: 554 SAKMRVLMRQCGVSKTPGCSWIDI 577
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/578 (65%), Positives = 454/578 (78%), Gaps = 22/578 (3%)
Query: 2 LLRAKAYSRHLAFTELN--------DPS--LLREKLLSLLKKCPSTKTVQQIHTQMLINF 51
+LR KA S HL LN +P+ L +K SLL++C S K ++QIH Q+L N
Sbjct: 1 MLRTKA-SPHLISRYLNLQKPHSKPNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLLTNS 59
Query: 52 IQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK 111
I KPN L +I DLKDF YAS+ F I P EY+FNVMIRGL+TAW K S +L+ Y +MK
Sbjct: 60 IHKPNSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMK 119
Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
LGLKP+N TYPF+FI+C+NLLA+ +G H SV + GLDED HVSHSLITMYARCGK+
Sbjct: 120 FLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMG 179
Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
ARKVFDEI ++DLVSWNSMISGYSKM +A EAV LF M E F P+E++LVSVLG+CG
Sbjct: 180 DARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACG 239
Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
+LGDL LG WVE FVV+NKM LN++MGSALI MYGKCG LV ARR+FD+M KD VTWNA
Sbjct: 240 ELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNA 299
Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
MIT YAQNG+S EAI LF M+ + PD+ITLIG+LSACASIGALDLGK V+ YAS+RG
Sbjct: 300 MITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERG 359
Query: 352 LRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
+ D++ CGS+D+A +VF MP NEVSWNAMISALAF+G+A EAL LF+
Sbjct: 360 FQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFK 419
Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
M EGG PND+TF+GVLSACVHAGLVDEGRRLF +MSSSFGL+PK EHYSCMVDL++
Sbjct: 420 SMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFS 479
Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
RAGHL EAWDFV MPEK DE++LGALLGACQK+KN D+S+RVM+LLLE+E SNSGNYVI
Sbjct: 480 RAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVI 539
Query: 521 SSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
SSK++ANL+ WDDSA+MR LM++KGVSKTPGCSWI I+
Sbjct: 540 SSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDIN 577
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/578 (65%), Positives = 454/578 (78%), Gaps = 22/578 (3%)
Query: 2 LLRAKAYSRHLAFTELN--------DPS--LLREKLLSLLKKCPSTKTVQQIHTQMLINF 51
+LR KA S HL LN +P+ L +K SLL++C S K ++QIH Q+L N
Sbjct: 1 MLRTKA-SPHLISRYLNLQKPHSKPNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLLTNS 59
Query: 52 IQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK 111
I KPN L +I DLKDF YAS+ F I P EY+FNVMIRGL+TAW K S +L+ Y +MK
Sbjct: 60 IHKPNSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMK 119
Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
LGLKP+N TYPF+FI+C+NLLA+ +G H SV + GLDED HVSHSLITMYARCGK+
Sbjct: 120 FLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMG 179
Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
ARKVFDEI ++DLVSWNSMISGYSKM +A EAV LF M E F P+E++LVSVLG+CG
Sbjct: 180 DARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACG 239
Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
+LGDL LG WVE FVV+NKM LN++MGSALI MYGKCG LV ARR+FD+M KD VTWNA
Sbjct: 240 ELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNA 299
Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
MIT YAQNG+S EAI LF M+ + PD+ITLIG+LSACASIGALDLGK V+ YAS+RG
Sbjct: 300 MITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERG 359
Query: 352 LRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
+ D++ CGS+D+A +VF MP NEVSWNAMISALAF+G+A EAL LF+
Sbjct: 360 FQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFK 419
Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
M EGG PND+TF+GVLSACVHAGLVDEGRRLF +MSSSFGL+PK EHYSCMVDL++
Sbjct: 420 SMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFS 479
Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
RAGHL EAWDFV MPEK DE++LGALLGACQK+KN D+S+RVM+LLLE+E SNSGNYVI
Sbjct: 480 RAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVI 539
Query: 521 SSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
SSK++ANL+ WDDSA+MR LM++KGVSKTPGCSWI I+
Sbjct: 540 SSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDIN 577
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/567 (62%), Positives = 445/567 (78%), Gaps = 21/567 (3%)
Query: 9 SRHLAFTELN-----DPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII 63
S+H F +N P L LLSLLK+CPSTKT+QQIHTQ I+ I KPN LL + I
Sbjct: 4 SKHKIFKTINTNTNHSPIFL---LLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSI 60
Query: 64 DLKDFNYASLLFHQIS-RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
LKDF Y++L+F I+ PN+YAFN+M+R TT W Y +L LY+QMK L + P+NFT+
Sbjct: 61 SLKDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTF 120
Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
PFVF++CANL + H VFK+GLD D H +S++TMY RCG+ ARKVFDEI E
Sbjct: 121 PFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITE 180
Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEE-FLPDEITLVSVLGSCGDLGDLVLGKW 241
+DLVSWNS++SGY+K+G+A+EAVE+FGR+REE F PDE++LVSVLG+CG+LGDL LG+W
Sbjct: 181 KDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRW 240
Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
VEGFVV+ M +N Y+GSALI MY KCG LV +RR+FD M ++D +TWNA I+AYAQNG+
Sbjct: 241 VEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGM 300
Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
++EAI LF+ MK GV+P+K+TL VLSACASIGALDLGK +D+YA+ RGL+HDIF
Sbjct: 301 ADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATA 360
Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
CGS++ A +VF DMP N+ SWNAMISALA +G+A EAL LFERMS EGG+AR
Sbjct: 361 LIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSAR 420
Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
PND+TF+ +LSACVHAGLVDEG RLFD+MS+ FGL+PK EHYSCMVDL +RAGHL EAWD
Sbjct: 421 PNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWD 480
Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
+E+MPEK D + LGAL ACQ++KN D+ +RV+Q+LLE++ SNSGNY+ISSKI+ NL M
Sbjct: 481 VIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNM 540
Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGI 557
WDD+A+MRALMRE GV+KTPGCSWI +
Sbjct: 541 WDDAARMRALMRENGVTKTPGCSWIEV 567
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/567 (62%), Positives = 445/567 (78%), Gaps = 21/567 (3%)
Query: 9 SRHLAFTELN-----DPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII 63
S+H F +N P L LLSLLK+CPSTKT+QQIHTQ I+ I KPN LL + I
Sbjct: 4 SKHKIFKTINTNTNHSPIFL---LLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSI 60
Query: 64 DLKDFNYASLLFHQIS-RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
LKDF Y++L+F I+ PN+YAFN+M+R TT W Y +L LY+QMK L + P+NFT+
Sbjct: 61 SLKDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTF 120
Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
PFVF++CANL + H VFK+GLD D H +S++TMY RCG+ ARKVFDEI E
Sbjct: 121 PFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITE 180
Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEE-FLPDEITLVSVLGSCGDLGDLVLGKW 241
+DLVSWNS++SGY+K+G+A+EAVE+FGR+REE F PDE++LVSVLG+CG+LGDL LG+W
Sbjct: 181 KDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRW 240
Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
VEGFVV+ M +N Y+GSALI MY KCG LV +RR+FD M ++D +TWNA I+AYAQNG+
Sbjct: 241 VEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGM 300
Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
++EAI LF+ MK GV+P+K+TL VLSACASIGALDLGK +D+YA+ RGL+HDIF
Sbjct: 301 ADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATA 360
Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
CGS++ A +VF DMP N+ SWNAMISALA +G+A EAL LFERMS EGG+AR
Sbjct: 361 LIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSAR 420
Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
PND+TF+ +LSACVHAGLVDEG RLFD+MS+ FGL+PK EHYSCMVDL +RAGHL EAWD
Sbjct: 421 PNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWD 480
Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
+E+MPEK D + LGAL ACQ++KN D+ +RV+Q+LLE++ SNSGNY+ISSKI+ NL M
Sbjct: 481 VIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNM 540
Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGI 557
WDD+A+MRALMRE GV+KTPGCSWI +
Sbjct: 541 WDDAARMRALMRENGVTKTPGCSWIEV 567
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/570 (61%), Positives = 441/570 (77%), Gaps = 20/570 (3%)
Query: 10 RHLAFTELNDPSLLR-----EKLLSLLKKCPSTKTVQQIHTQMLINF-IQKPN-FLLIRI 62
RHLAF + + E L+ L K+C STKT+QQ+HTQM++N I PN LL +
Sbjct: 5 RHLAFENVAVGGKCKYYHTAECLVFLAKQCSSTKTLQQVHTQMVVNSSIHTPNNHLLSKA 64
Query: 63 IDLKDFNYASLLFHQIS-RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
I LK+F Y+SLLF I+ PN+YAFN+MIR LTT W Y +L L+++M L L PDNFT
Sbjct: 65 IHLKNFPYSSLLFSHIAPHPNDYAFNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFT 124
Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
+PF F+SCANL +L+H + HS +FK+ L D H +HSLIT YARCG + SARKVFDEI
Sbjct: 125 FPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIP 184
Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGK 240
RD VSWNSMI+GY+K G A+EAVE+F M R + F PDE++LVS+LG+CG+LGDL LG+
Sbjct: 185 HRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGR 244
Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
WVEGFVV+ M LN Y+GSALI MY KCG L ARR+FD M +DV+TWNA+I+ YAQNG
Sbjct: 245 WVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNG 304
Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-- 358
+++EAI+LF+ MK V +KITL VLSACA+IGALDLGK +D+YASQRG +HDIF
Sbjct: 305 MADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVAT 364
Query: 359 ---------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
GS+D+A +VF+DMP NE SWNAMISALA +G+A EAL LF+ MS EGG A
Sbjct: 365 ALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGA 424
Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
RPND+TF+G+LSACVHAGLVDEG RLFD+MS+ FGL+PK EHYSCMVDL ARAGHL EAW
Sbjct: 425 RPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAW 484
Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
D + +MPEK D++ LGALLGAC+ +KN D+ +RVM+++LE++ SNSGNY+ISSKI+ANL
Sbjct: 485 DLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVMRMILEVDPSNSGNYIISSKIYANLN 544
Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
MW+DSA+MR LMR+KG++KTPGCSWI +++
Sbjct: 545 MWEDSARMRLLMRQKGITKTPGCSWIEVEN 574
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/548 (62%), Positives = 432/548 (78%), Gaps = 15/548 (2%)
Query: 27 LLSLLKKCPSTKTVQQIHTQMLI-NFIQKPN-FLLIRIIDLKDFNYASLLFHQIS-RPNE 83
L+ L K+C S+KT+QQ+H QM++ + I PN LL + I LK+F YASLLF I+ PN+
Sbjct: 21 LVFLAKQCSSSKTLQQVHAQMVVKSSIHSPNNHLLSKAIHLKNFTYASLLFSHIAPHPND 80
Query: 84 YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
YAFN+MIR LTT W Y +L L+++M L L P+NFT+PF F+SCANL L+ + HS
Sbjct: 81 YAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARAAHS 140
Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
VFK+ L D H +HSLITMY+RCG++ ARKVFDEI RDLVSWNSMI+GY+K G A+E
Sbjct: 141 LVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCARE 200
Query: 204 AVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
AVE+FG M R + F PDE++LVSVLG+CG+LGDL LG+WVEGFVV+ M LN Y+GSALI
Sbjct: 201 AVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALI 260
Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
MY KCG L ARR+FD M +DV+TWNA+I+ YAQNG+++EAI LF+ MK V +KI
Sbjct: 261 SMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKI 320
Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
TL VLSACA+IGALDLGK +D+YASQRG +HDIF CGS+ A +VF++M
Sbjct: 321 TLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEM 380
Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
P NE SWNAMISALA +G+A EAL LF+ MS EGG ARPND+TF+G+LSACVHAGLV+E
Sbjct: 381 PQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNE 440
Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
G RLFD+MS+ FGL+PK EHYSCMVDL ARAGHL EAWD +E+MPEK D++ LGALLGAC
Sbjct: 441 GYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLGAC 500
Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
+ +KN D+ +RV++++LE++ SNSGNY+ISSKI+ANL MW+DSA+MR LMR+KG++KTPG
Sbjct: 501 RSKKNVDIGERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPG 560
Query: 552 CSWIGIDD 559
CSWI +++
Sbjct: 561 CSWIEVEN 568
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana] gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/548 (56%), Positives = 402/548 (73%), Gaps = 17/548 (3%)
Query: 23 LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
L L LLKKC S ++QI QML++ ++KPNFL+ + ++L DFNY+S LF PN
Sbjct: 32 LERDFLFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPN 91
Query: 83 EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
Y+FN MIRGLT W + +L LY +MK GLKPD FTY FVFI+CA L + G SVH
Sbjct: 92 HYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVH 151
Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
SS+FK+GL+ D H++HSLI MYA+CG++ ARK+FDEI ERD VSWNSMISGYS+ GYAK
Sbjct: 152 SSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAK 211
Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
+A++LF +M EE F PDE TLVS+LG+C LGDL G+ +E + K+ L+ ++GS LI
Sbjct: 212 DAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLI 271
Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
MYGKCG L ARRVF+ M+ KD V W AMIT Y+QNG S+EA LF M+ GV+PD
Sbjct: 272 SMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAG 331
Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
TL VLSAC S+GAL+LGK ++ +AS+ L+H+I+ CG +++AL+VFE M
Sbjct: 332 TLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAM 391
Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
PV NE +WNAMI+A A G A EALLLF+RMS P+D+TFIGVLSACVHAGLV +
Sbjct: 392 PVKNEATWNAMITAYAHQGHAKEALLLFDRMS-----VPPSDITFIGVLSACVHAGLVHQ 446
Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
G R F MSS FGL+PK EHY+ ++DL +RAG L EAW+F+ER P K DEI+L A+LGAC
Sbjct: 447 GCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGAC 506
Query: 492 QKQKNTDVSQRVMQLLLEI-ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
K+K+ + ++ M++L+E+ E+ N+GNYVISS + A++KMWD+SAKMRALMR++GV KTP
Sbjct: 507 HKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTP 566
Query: 551 GCSWIGID 558
GCSWI I+
Sbjct: 567 GCSWIEIE 574
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/548 (56%), Positives = 402/548 (73%), Gaps = 17/548 (3%)
Query: 23 LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
L L LLKKC S ++QI QML++ ++KPNFL+ + ++L DFNY+S LF PN
Sbjct: 36 LERDFLFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPN 95
Query: 83 EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
Y+FN MIRGLT W + +L LY +MK GLKPD FTY FVFI+CA L + G SVH
Sbjct: 96 HYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVH 155
Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
SS+FK+GL+ D H++HSLI MYA+CG++ ARK+FDEI ERD VSWNSMISGYS+ GYAK
Sbjct: 156 SSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAK 215
Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
+A++LF +M EE F PDE TLVS+LG+C LGDL G+ +E + K+ L+ ++GS LI
Sbjct: 216 DAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLI 275
Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
MYGKCG L ARRVF+ M+ KD V W AMIT Y+QNG S+EA LF M+ GV+PD
Sbjct: 276 SMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAG 335
Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
TL VLSAC S+GAL+LGK ++ +AS+ L+H+I+ CG +++AL+VFE M
Sbjct: 336 TLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAM 395
Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
PV NE +WNAMI+A A G A EALLLF+RMS P+D+TFIGVLSACVHAGLV +
Sbjct: 396 PVKNEATWNAMITAYAHQGHAKEALLLFDRMS-----VPPSDITFIGVLSACVHAGLVHQ 450
Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
G R F MSS FGL+PK EHY+ ++DL +RAG L EAW+F+ER P K DEI+L A+LGAC
Sbjct: 451 GCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGAC 510
Query: 492 QKQKNTDVSQRVMQLLLEI-ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
K+K+ + ++ M++L+E+ E+ N+GNYVISS + A++KMWD+SAKMRALMR++GV KTP
Sbjct: 511 HKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTP 570
Query: 551 GCSWIGID 558
GCSWI I+
Sbjct: 571 GCSWIEIE 578
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 566 | ||||||
| TAIR|locus:2121055 | 559 | AT4G38010 "AT4G38010" [Arabido | 0.909 | 0.921 | 0.392 | 6.8e-95 | |
| TAIR|locus:2077878 | 685 | AT3G08820 "AT3G08820" [Arabido | 0.911 | 0.753 | 0.363 | 2.1e-93 | |
| TAIR|locus:2080727 | 623 | MEF10 "mitochondrial RNA editi | 0.823 | 0.747 | 0.392 | 2.6e-86 | |
| TAIR|locus:2122551 | 834 | AT4G39530 [Arabidopsis thalian | 0.908 | 0.616 | 0.361 | 3.8e-85 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.863 | 0.570 | 0.352 | 1.5e-83 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.830 | 0.634 | 0.363 | 6.4e-83 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.855 | 0.555 | 0.356 | 1.7e-82 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.729 | 0.555 | 0.398 | 1.7e-82 | |
| TAIR|locus:2181201 | 691 | AT5G27110 [Arabidopsis thalian | 0.802 | 0.657 | 0.359 | 7.4e-82 | |
| TAIR|locus:2091546 | 628 | AT3G13770 [Arabidopsis thalian | 0.787 | 0.710 | 0.368 | 4.1e-81 |
| TAIR|locus:2121055 AT4G38010 "AT4G38010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
Identities = 213/543 (39%), Positives = 315/543 (58%)
Query: 34 CPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDF-NYASLLFHQI-SRPNEYAFN 87
C S + +QI TQ++ + + + ++ +++ DF +Y+S++ H I S + +++N
Sbjct: 16 CSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSIRSVLSSFSYN 75
Query: 88 VMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFK 147
++ K ++ Y G PD FT+P VF +C + G +H V K
Sbjct: 76 TLLSSYAVC-DKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTK 134
Query: 148 IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVEL 207
+G +D +V +SL+ Y CG+ +A KVF E+ RD+VSW +I+G+++ G KEA++
Sbjct: 135 MGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYKEALDT 194
Query: 208 FGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267
F +M E P+ T V VL S G +G L LGK + G ++K ++ G+ALIDMY K
Sbjct: 195 FSKMDVE---PNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMYVK 251
Query: 268 CGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKITLIG 326
C L A RVF + KD V+WN+MI+ S EAI LF+ M+ + G+ PD L
Sbjct: 252 CEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTS 311
Query: 327 VLSACASIGALDLGKWVDKYASQRGLR---H------DIF--CGSIDDALKVFEDMPVTN 375
VLSACAS+GA+D G+WV +Y G++ H D++ CG I+ AL++F + N
Sbjct: 312 VLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKN 371
Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
+WNA++ LA +G E+L FE M K G +PN VTF+ L+AC H GLVDEGRR
Sbjct: 372 VFTWNALLGGLAIHGHGLESLRYFEEMVKLG--FKPNLVTFLAALNACCHTGLVDEGRRY 429
Query: 436 FDLMSS-SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQ 494
F M S + L PK EHY CM+DL RAG L EA + V+ MP K D + GA+L AC K
Sbjct: 430 FHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSAC-KN 488
Query: 495 KNT--DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
+ T ++ + ++ L+IE +SG YV+ S IFA + WDD A++R LM+ KG+SK PG
Sbjct: 489 RGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGISKVPGS 548
Query: 553 SWI 555
S+I
Sbjct: 549 SYI 551
|
|
| TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 194/534 (36%), Positives = 312/534 (58%)
Query: 40 VQQIHTQMLINFIQKPNFL----LIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTT 95
++QIH ++ + + FL L R + + Y+ LLF PN + +N +I G
Sbjct: 29 LKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVN 88
Query: 96 AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
+ +L L+ +++ GL FT+P V +C + G+ +HS V K G + D
Sbjct: 89 N-HLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVA 147
Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
SL+++Y+ G+L+ A K+FDEI +R +V+W ++ SGY+ G +EA++LF +M E
Sbjct: 148 AMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMG 207
Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
PD +V VL +C +GDL G+W+ ++ + +M N ++ + L+++Y KCG + AR
Sbjct: 208 VKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKAR 267
Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
VFD+MV KD+VTW+ MI YA N E I LF +M + PD+ +++G LS+CAS+G
Sbjct: 268 SVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLG 327
Query: 336 ALDLGKW----VDKYASQRGLRH-----DIF--CGSIDDALKVFEDMPVTNEVSWNAMIS 384
ALDLG+W +D++ L D++ CG++ +VF++M + V NA IS
Sbjct: 328 ALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAIS 387
Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
LA NG + +F + K G P+ TF+G+L CVHAGL+ +G R F+ +S +
Sbjct: 388 GLAKNGHVKLSFAVFGQTEKLG--ISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYA 445
Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
L EHY CMVDL+ RAG L +A+ + MP + + IV GALL C+ K+T +++ V+
Sbjct: 446 LKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVL 505
Query: 505 QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
+ L+ +E N+GNYV S I++ WD++A++R +M +KG+ K PG SWI ++
Sbjct: 506 KELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELE 559
|
|
| TAIR|locus:2080727 MEF10 "mitochondrial RNA editing factor 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 190/484 (39%), Positives = 281/484 (58%)
Query: 86 FNVMIRGLTTAWQK-YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
+NV +R L A+Q +S S+ LY M R G PD F++PF+ SCA+L G +H
Sbjct: 21 WNVRLREL--AYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCH 78
Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS--WNSMISGYSKMGYAK 202
V K G + + V +LI+MY +CG + ARKVF+E + +S +N++ISGY+
Sbjct: 79 VTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVT 138
Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
+A +F RM+E D +T++ ++ C L LG+ + G VK +D + ++ I
Sbjct: 139 DAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFI 198
Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
MY KCG++ RR+FD M K ++TWNA+I+ Y+QNGL+ + + L+ +MK +GV PD
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPF 258
Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
TL+ VLS+CA +GA +G V K G ++F CG++ A VF+ M
Sbjct: 259 TLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIM 318
Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
PV + VSW AMI +G L+LF+ M K G RP+ F+ VLSAC H+GL D+
Sbjct: 319 PVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRG--IRPDGAVFVMVLSACSHSGLTDK 376
Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
G LF M + L P EHYSC+VDL RAG L EA +F+E MP + D V GALLGAC
Sbjct: 377 GLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGAC 436
Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
+ KN D+++ ++E E +N G YV+ S I+++ K + ++R +MRE+ K PG
Sbjct: 437 KIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPG 496
Query: 552 CSWI 555
S++
Sbjct: 497 YSYV 500
|
|
| TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
Identities = 194/536 (36%), Positives = 303/536 (56%)
Query: 41 QQIHTQMLINFIQKPNFLLIRIID--LKDFNY--ASLLFHQISRPNEYAFNVMIRGLTTA 96
+QIH +L ++ L+ +ID +K A LF+ + N ++ ++ G
Sbjct: 269 KQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQN 328
Query: 97 WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
+ +++L+ M + GLKPD + + SCA+L AL G VH+ K L D +V
Sbjct: 329 -ALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYV 387
Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA---KEAVELFGRMRE 213
++SLI MYA+C L ARKVFD D+V +N+MI GYS++G EA+ +F MR
Sbjct: 388 TNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRF 447
Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
P +T VS+L + L L L K + G + K ++L+ + GSALID+Y C L
Sbjct: 448 RLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKD 507
Query: 274 ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
+R VFD M KD+V WN+M Y Q + EA+ LF ++ + PD+ T +++A +
Sbjct: 508 SRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGN 567
Query: 334 IGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAM 382
+ ++ LG+ +RGL D++ CGS +DA K F+ + V WN++
Sbjct: 568 LASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSV 627
Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
IS+ A +G +AL + E+M EG PN +TF+GVLSAC HAGLV++G + F+LM
Sbjct: 628 ISSYANHGEGKKALQMLEKMMSEG--IEPNYITFVGVLSACSHAGLVEDGLKQFELMLR- 684
Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
FG+ P++EHY CMV L RAG L++A + +E+MP K IV +LL C K N ++++
Sbjct: 685 FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEH 744
Query: 503 VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
++ + + +SG++ + S I+A+ MW ++ K+R M+ +GV K PG SWIGI+
Sbjct: 745 AAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGIN 800
|
|
| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
Identities = 177/502 (35%), Positives = 291/502 (57%)
Query: 68 FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
F+ AS LF +SR + +N MI G + SL +Y+M G+ PD T+ +
Sbjct: 290 FDDASKLFRMMSRADTVTWNCMISGYVQSGLM-EESLTFFYEMISSGVLPDAITFSSLLP 348
Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
S + L + +H + + + D ++ +LI Y +C + A+ +F + D+V
Sbjct: 349 SVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVV 408
Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
+ +MISGY G +++E+F + + + P+EITLVS+L G L L LG+ + GF++
Sbjct: 409 FTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFII 468
Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
K D +G A+IDMY KCG + A +F+ + +D+V+WN+MIT AQ+ + AI
Sbjct: 469 KKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAID 528
Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
+F +M +G+ D +++ LSACA++ + GK + + + L D++
Sbjct: 529 IFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYA 588
Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
CG++ A+ VF+ M N VSWN++I+A +G+ ++L LF M ++ G RP+ +TF
Sbjct: 589 KCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGI-RPDQITF 647
Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
+ ++S+C H G VDEG R F M+ +G+ P+ EHY+C+VDL+ RAG L+EA++ V+ MP
Sbjct: 648 LEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMP 707
Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
D V G LLGAC+ KN ++++ L++++ SNSG YV+ S AN + W+ K
Sbjct: 708 FPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTK 767
Query: 537 MRALMREKGVSKTPGCSWIGID 558
+R+LM+E+ V K PG SWI I+
Sbjct: 768 VRSLMKEREVQKIPGYSWIEIN 789
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 179/492 (36%), Positives = 286/492 (58%)
Query: 81 PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
PN Y F +++ + + + +++ + +LG D + V S ++ N +
Sbjct: 132 PNSYTFPFVLKSCAKS-KAFKEGQQIHGHVLKLGCDLDLY----VHTSLISMYVQNGRLE 186
Query: 141 VHSSVFKIGLDEDDHVSHS-LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
VF D VS++ LI YA G +++A+K+FDEI +D+VSWN+MISGY++ G
Sbjct: 187 DAHKVFDKS-PHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETG 245
Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
KEA+ELF M + PDE T+V+V+ +C G + LG+ V ++ + N + +
Sbjct: 246 NYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVN 305
Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
ALID+Y KCG L A +F+ + KDV++WN +I Y L EA++LF M +G P
Sbjct: 306 ALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 365
Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQR--GLRH---------DIF--CGSIDDALK 366
+ +T++ +L ACA +GA+D+G+W+ Y +R G+ + D++ CG I+ A +
Sbjct: 366 NDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 425
Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
VF + + SWNAMI A +GRA + LF RM K G +P+D+TF+G+LSAC H+
Sbjct: 426 VFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG--IQPDDITFVGLLSACSHS 483
Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
G++D GR +F M+ + + PK EHY CM+DL +G EA + + M + D ++ +
Sbjct: 484 GMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCS 543
Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
LL AC+ N ++ + + L++IE N G+YV+ S I+A+ W++ AK RAL+ +KG+
Sbjct: 544 LLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGM 603
Query: 547 SKTPGCSWIGID 558
K PGCS I ID
Sbjct: 604 KKVPGCSSIEID 615
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
Identities = 178/499 (35%), Positives = 291/499 (58%)
Query: 71 ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
A +F +++ + ++N +I G + L ++ QM G++ D T VF CA
Sbjct: 249 ARKVFDEMTERDVISWNSIINGYVSNGLA-EKGLSVFVQMLVSGIEIDLATIVSVFAGCA 307
Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
+ ++ G +VHS K +D ++L+ MY++CG LDSA+ VF E+ +R +VS+ S
Sbjct: 308 DSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTS 367
Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
MI+GY++ G A EAV+LF M EE PD T+ +VL C L GK V ++ +N
Sbjct: 368 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEND 427
Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
+ + ++ +AL+DMY KCG++ A VF M KD+++WN +I Y++N +NEA+ LFN
Sbjct: 428 LGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFN 487
Query: 311 RM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL---RH------DIF--C 358
+ + +PD+ T+ VL ACAS+ A D G+ + Y + G RH D++ C
Sbjct: 488 LLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKC 547
Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
G++ A +F+D+ + VSW MI+ +G EA+ LF +M + G A ++++F+
Sbjct: 548 GALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA--DEISFVS 605
Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
+L AC H+GLVDEG R F++M + P EHY+C+VD+ AR G L +A+ F+E MP
Sbjct: 606 LLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIP 665
Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
D + GALL C+ + ++++V + + E+E N+G YV+ + I+A + W+ ++R
Sbjct: 666 PDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLR 725
Query: 539 ALMREKGVSKTPGCSWIGI 557
+ ++G+ K PGCSWI I
Sbjct: 726 KRIGQRGLRKNPGCSWIEI 744
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| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 171/429 (39%), Positives = 254/429 (59%)
Query: 139 VSVHSSVFKIGLDEDDHVSH-SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
+S VF GLD+ + V + SL+ CG ++ A ++F + E+D VSW +MI G ++
Sbjct: 190 ISDAKKVF-YGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQ 247
Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
G AKEA+E F M+ + D+ SVL +CG LG + GK + +++ + Y+
Sbjct: 248 NGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYV 307
Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
GSALIDMY KC L A+ VFD M K+VV+W AM+ Y Q G + EA+ +F M+ +G+
Sbjct: 308 GSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGI 367
Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
+PD TL +SACA++ +L+ G A GL H + CG IDD+ +
Sbjct: 368 DPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTR 427
Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
+F +M V + VSW AM+SA A GRA E + LF++M + G +P+ VT GV+SAC A
Sbjct: 428 LFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHG--LKPDGVTLTGVISACSRA 485
Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
GLV++G+R F LM+S +G++P HYSCM+DL++R+G L EA F+ MP D I
Sbjct: 486 GLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTT 545
Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
LL AC+ + N ++ + + L+E++ + Y + S I+A+ WD A++R MREK V
Sbjct: 546 LLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNV 605
Query: 547 SKTPGCSWI 555
K PG SWI
Sbjct: 606 KKEPGQSWI 614
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| TAIR|locus:2181201 AT5G27110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
Identities = 169/470 (35%), Positives = 271/470 (57%)
Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
+L+L+ +M+ G +P++ + +C+ LL L G +H K G + D++V+ +L+
Sbjct: 192 ALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVD 251
Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
MY +C L+ AR+VF ++ + LV+WNSMI GY G +K VE+ RM E P + T
Sbjct: 252 MYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTT 311
Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
L S+L +C +L+ GK++ G+V+++ ++ + Y+ +LID+Y KCG A VF +
Sbjct: 312 LTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVF-SKT 370
Query: 283 NKDVV-TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
KDV +WN MI++Y G +A+ ++++M GV PD +T VL AC+ + AL+ GK
Sbjct: 371 QKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGK 430
Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
+ S+ L D CG+ +A ++F +P + VSW MISA +G
Sbjct: 431 QIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHG 490
Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
+ EAL F+ M K G +P+ VT + VLSAC HAGL+DEG + F M S +G+ P E
Sbjct: 491 QPREALYQFDEMQKFG--LKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIE 548
Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLGACQKQKNTDVSQRVMQLLLE 509
HYSCM+D+ RAG L EA++ +++ PE D +L L AC + R+ +LL+E
Sbjct: 549 HYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVE 608
Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
++ Y++ ++A+ + WD + ++R M+E G+ K PGCSWI + D
Sbjct: 609 NYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSD 658
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| TAIR|locus:2091546 AT3G13770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 169/459 (36%), Positives = 269/459 (58%)
Query: 109 QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
+M LG + Y + +C + AL G VH+ + K ++ L+ Y +C
Sbjct: 42 EMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCD 101
Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
L+ ARKV DE+ E+++VSW +MIS YS+ G++ EA+ +F M + P+E T +VL
Sbjct: 102 CLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLT 161
Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
SC L LGK + G +VK D + ++GS+L+DMY K G + AR +F+ + +DVV+
Sbjct: 162 SCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVS 221
Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
A+I YAQ GL EA+ +F+R+ G++P+ +T +L+A + + LD GK +
Sbjct: 222 CTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVL 281
Query: 349 QRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
+R L D++ CG++ A ++F++MP +SWNAM+ + +G E L
Sbjct: 282 RRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLE 341
Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHYSCMV 456
LF R+ ++ +P+ VT + VLS C H + D G +FD +++ +G P +EHY C+V
Sbjct: 342 LF-RLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIV 400
Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
D+ RAG + EA++F++RMP K VLG+LLGAC+ + D+ + V + L+EIE N+G
Sbjct: 401 DMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAG 460
Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
NYVI S ++A+ W D +RA+M +K V+K PG SWI
Sbjct: 461 NYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWI 499
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O64705 | PP184_ARATH | No assigned EC number | 0.5656 | 0.9381 | 0.8550 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00001532001 | SubName- Full=Chromosome chr11 scaffold_118, whole genome shotgun sequence; (618 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 566 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-106 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-99 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-90 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-67 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-52 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-34 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 339 bits (870), Expect = e-106
Identities = 174/511 (34%), Positives = 273/511 (53%), Gaps = 16/511 (3%)
Query: 56 NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
N L+ + D A L+F ++ R + ++N MI G + L+L++ M+ L +
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLE-GLELFFTMRELSV 284
Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
PD T V +C L G +H V K G D V +SLI MY G A K
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
VF + +D VSW +MISGY K G +A+E + M ++ PDEIT+ SVL +C LGD
Sbjct: 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404
Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
L +G + + + + +ALI+MY KC + A VF + KDV++W ++I
Sbjct: 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG 464
Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
N EA++ F +M + P+ +TLI LSACA IGAL GK + + + G+ D
Sbjct: 465 LRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523
Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
F CG ++ A F + + VSWN +++ +G+ A+ LF RM +
Sbjct: 524 GFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582
Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
G P++VTFI +L AC +G+V +G F M + + P +HY+C+VDL RAG
Sbjct: 583 SG--VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640
Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
L+EA++F+ +MP D V GALL AC+ ++ ++ + Q + E++ ++ G Y++ +
Sbjct: 641 LTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNL 700
Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
+A+ WD+ A++R MRE G++ PGCSW+
Sbjct: 701 YADAGKWDEVARVRKTMRENGLTVDPGCSWV 731
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 316 bits (811), Expect = 1e-99
Identities = 149/450 (33%), Positives = 242/450 (53%), Gaps = 13/450 (2%)
Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
TY + +C L ++ +V+ V G + D ++ + ++ M+ +CG L AR++FDE+
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
ER+L SW ++I G G +EA LF M E+ + T V +L + LG G+
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
+ V+K + + ++ ALIDMY KCG + AR VFD M K V WN+M+ YA +G
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG 304
Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI---- 356
S EA+ L+ M+ +GV+ D+ T ++ + + L+ K + G DI
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 357 -----FC--GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
+ G ++DA VF+ MP N +SWNA+I+ +GR +A+ +FERM EG A
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA- 423
Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
PN VTF+ VLSAC ++GL ++G +F MS + + P++ HY+CM++L R G L EA+
Sbjct: 424 -PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482
Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
+ R P K + ALL AC+ KN ++ + + L + NYV+ ++ +
Sbjct: 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG 542
Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
++AK+ ++ KG+S P C+WI +
Sbjct: 543 RQAEAAKVVETLKRKGLSMHPACTWIEVKK 572
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 295 bits (757), Expect = 3e-90
Identities = 154/435 (35%), Positives = 241/435 (55%), Gaps = 36/435 (8%)
Query: 56 NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
N +L + + +A +F ++ + +++NV++ G A + +L LY++M G+
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKA-GYFDEALCLYHRMLWAGV 183
Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
+PD +T+P V +C + L G VH+ V + G + D V ++LITMY +CG + SAR
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243
Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
VFD + RD +SWN+MISGY + G E +ELF MRE PD +T+ SV+ +C LGD
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
LG+ + G+VVK ++ + ++LI MY G+ A +VF M KD V+W AMI+
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363
Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
Y +NGL ++A+ + M+ V+PD+IT+ VLSACA +G LD+G + + A ++GL
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423
Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
+ C ID AL+VF ++P + +SW ++I+ L N R EAL+ F +M
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML- 482
Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRL----------FDLMSSSFGLIPKSEHYSC 454
+PN VT I LSAC G + G+ + FD G +P +
Sbjct: 483 --LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD------GFLPNA----- 529
Query: 455 MVDLYARAGHLSEAW 469
++DLY R G ++ AW
Sbjct: 530 LLDLYVRCGRMNYAW 544
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Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 1e-67
Identities = 142/446 (31%), Positives = 218/446 (48%), Gaps = 25/446 (5%)
Query: 54 KPNFLLIRIIDLKDFN-YASLLFHQISR--------PNEYAF-NVMIRGLTTAWQKYSHS 103
KPN + + Y + + SR + N +R L + + +
Sbjct: 12 KPNLFQLASHKAPNVLPYWNFHGRKRSRGLSVAASSSSSTHDSNSQLRALC-SHGQLEQA 70
Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
LKL M+ L + D Y +F C A+ G V S + +++++M
Sbjct: 71 LKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM 130
Query: 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
+ R G+L A VF ++ ERDL SWN ++ GY+K GY EA+ L+ RM PD T
Sbjct: 131 FVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190
Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283
VL +CG + DL G+ V VV+ +L+ + +ALI MY KCG +V AR VFD M
Sbjct: 191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR 250
Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
+D ++WNAMI+ Y +NG E + LF M+ V+PD +T+ V+SAC +G LG+ +
Sbjct: 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310
Query: 344 DKYASQRGLRHDI-FC----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
Y + G D+ C GS +A KVF M + VSW AMIS NG
Sbjct: 311 HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLP 370
Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
+AL + M ++ P+++T VLSAC G +D G +L +L GLI
Sbjct: 371 DKALETYALMEQDN--VSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVA 427
Query: 453 SCMVDLYARAGHLSEAWDFVERMPEK 478
+ ++++Y++ + +A + +PEK
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEK 453
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 6e-52
Identities = 101/345 (29%), Positives = 173/345 (50%), Gaps = 14/345 (4%)
Query: 71 ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
A LF ++ N ++ +I GL A Y + L+ +M G + T+ + + A
Sbjct: 177 ARRLFDEMPERNLASWGTIIGGLVDAGN-YREAFALFREMWEDGSDAEPRTFVVMLRASA 235
Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
L + G +H V K G+ D VS +LI MY++CG ++ AR VFD + E+ V+WNS
Sbjct: 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNS 295
Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
M++GY+ GY++EA+ L+ MR+ D+ T ++ L L K +++
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
L+ +AL+D+Y K G + AR VFD M K++++WNA+I Y +G +A+ +F
Sbjct: 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415
Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ------RGLRH----DIFC-- 358
RM GV P+ +T + VLSAC G + G + + S+ R + + ++
Sbjct: 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475
Query: 359 GSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERM 402
G +D+A + P V+ W A+++A + L E++
Sbjct: 476 GLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (348), Expect = 3e-34
Identities = 91/316 (28%), Positives = 142/316 (44%), Gaps = 15/316 (4%)
Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
NS + G ++A++L M+E DE V++ C + G V +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
+ L +G+A++ M+ + G LV A VF M +D+ +WN ++ YA+ G +EA+ L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------F 357
++RM +AGV PD T VL C I L G+ V + + G D+
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
CG + A VF+ MP + +SWNAMIS NG E L LF M + P+ +T
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM--RELSVDPDLMTIT 292
Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
V+SAC G GR + + + G + ++ +Y G EA RM
Sbjct: 293 SVISACELLGDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351
Query: 478 KVDEIVLGALLGACQK 493
K D + A++ +K
Sbjct: 352 K-DAVSWTAMISGYEK 366
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 8e-11
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
DVVT+N +I Y + G EA+ LFN MK G+ P+ T
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 64/277 (23%), Positives = 116/277 (41%), Gaps = 45/277 (16%)
Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK----DVVTWNAMITAYAQNGLSNEA 305
K D Y + LI K G + VF MVN +V T+ A+I A+ G +A
Sbjct: 469 KADCKLY--TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDAL 365
+ M+ V PD++ ++SAC GA +D A
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGA------------------------VDRAF 562
Query: 366 KVFEDM-----PVT-NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
V +M P+ + ++ A++ A A G+ A +++ + + P T
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI--A 620
Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-- 477
+++C G D ++D M G+ P +S +VD+ AG L +A++ ++ +
Sbjct: 621 VNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679
Query: 478 -KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
K+ + +L+GAC KN ++ ++L +I+S
Sbjct: 680 IKLGTVSYSSLMGACSNAKNW---KKALELYEDIKSI 713
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-09
Identities = 70/365 (19%), Positives = 145/365 (39%), Gaps = 71/365 (19%)
Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIR----ERDLVSWNSMISGYSKMGYAKEA 204
GL D + +LI+ A+ GK+D+ +VF E+ E ++ ++ ++I G ++ G +A
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
+G MR + PD + +++ +CG G V D+ L +M
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISACGQSG-----------AVDRAFDV-------LAEM 568
Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV--NPDKI 322
+ + P D +T A++ A A G + A ++ + + P+
Sbjct: 569 KAETHPIDP-----------DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617
Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP----VTNEVS 378
T+ +++C+ G D AL +++DM +EV
Sbjct: 618 TI--AVNSCSQKGDWDF------------------------ALSIYDDMKKKGVKPDEVF 651
Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
++A++ G +A + + K+G + V++ ++ AC +A + L++
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQG--IKLGTVSYSSLMGACSNAKNWKKALELYED 709
Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE---KVDEIVLGALLGACQKQK 495
+ S L P + ++ L +A + + M + I LL A +++
Sbjct: 710 IKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768
Query: 496 NTDVS 500
+ DV
Sbjct: 769 DADVG 773
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 8e-09
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
D+V++N++I GY K G +EA++LF M++ P+ T
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 6e-08
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
+ V++N +I G+ EAL LF M K G +PN T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG--IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 6e-07
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
V++NS+ISGY K G +EA+ELF M+E+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
VT+N++I+ Y + G EA+ LF MK GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
V++N++I G K G +EA+ELF M+E PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 159 SLITMYARCGKLDSARKVFDEIRER----DLVSWNSMISGYSK 197
+LI Y + GK++ A K+F+E+++R ++ +++ +I G K
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEG 406
V++N++IS G+ EAL LF+ M ++G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 81 PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
P+ +N +I G K +LKL+ +MK+ G+KP+ +TY
Sbjct: 1 PDVVTYNTLIDGYCKKG-KVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
VT+N +I + G EA+ LF MK G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 7e-05
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
DVVT+N +I + G +EA+ L + M+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 8e-05
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
+ T+NA++ A A+ G + A+ + MK +G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 31/289 (10%)
Query: 74 LFHQIS----RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
+FH++ N + F +I G A Q + + Y M+ +KPD + + +C
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 130 ANLLALNHGVSVHSSVFKIGLDED-DHVSH-SLITMYARCGKLDSARKVFDEIRERDLVS 187
A++ V + + D DH++ +L+ A G++D A++V+ I E ++
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612
Query: 188 ----WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI---TLVSVLGSCGDLGDLVLGK 240
+ ++ S+ G A+ ++ M+++ PDE+ LV V G GDL
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD------ 666
Query: 241 WVEGFVV-----KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM----VNKDVVTWNA 291
+ F + K + L S+L+ A +++ + + V T NA
Sbjct: 667 --KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724
Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
+ITA + +A+ + + MK G+ P+ IT +L A D+G
Sbjct: 725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 2e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
+ D+V++N++I G + G EAVEL M
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 260 ALIDMYGKCGALVPARRVFDAMVNK----DVVTWNAMITAYAQ 298
LID Y K G + A ++F+ M + +V T++ +I +
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 34.6 bits (81), Expect = 0.004
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMS 403
+ V++N +I L GR EA+ L + M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 566 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.73 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.66 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.58 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.51 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.49 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.46 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.45 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.41 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.36 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.36 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.34 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.26 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.24 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.23 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.2 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.19 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.19 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.18 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.16 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.15 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.12 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.09 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.04 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.04 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.04 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.02 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.99 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.99 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.98 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.97 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.96 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.93 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.91 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.9 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.89 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.88 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.86 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.85 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.83 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.83 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.81 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.81 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.75 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.67 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.67 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.66 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.65 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.59 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.57 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.57 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.54 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.5 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.47 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.43 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.43 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.43 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.41 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.41 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.4 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.39 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.39 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.38 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.38 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.38 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.34 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.31 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.29 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.27 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.27 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.27 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.27 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.26 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.25 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.25 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.22 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.21 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.18 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.16 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.13 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.12 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.1 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.09 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.08 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.08 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.06 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.04 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.98 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.96 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.95 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.94 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.88 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.88 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.86 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.81 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.8 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.78 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.77 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.75 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.75 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.7 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.68 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.68 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.67 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.65 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.61 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.61 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.6 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.57 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.57 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.56 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.56 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.55 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.53 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.46 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.46 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.43 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.43 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.42 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.41 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.4 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.4 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.36 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.35 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.34 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.33 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.33 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.32 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 97.3 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.3 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.29 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.29 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.29 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.29 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.27 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.26 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.25 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.17 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.15 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.09 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.08 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.07 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.06 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.04 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 97.03 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.99 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.92 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.9 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.88 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.88 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.85 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.83 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.81 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.79 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.76 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.64 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.61 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.53 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.49 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.47 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.46 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.41 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.37 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.35 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.32 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.29 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.24 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.24 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.1 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.1 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.05 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.05 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.96 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.91 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.88 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.71 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.7 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.51 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.47 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.38 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.3 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.19 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.16 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.16 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.12 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.99 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.99 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.98 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.82 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.76 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.73 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.68 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.61 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.47 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.24 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.94 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 93.83 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.78 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.77 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.76 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.7 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.68 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.61 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.58 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.58 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.56 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.39 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.27 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.27 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.25 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.24 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.19 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.11 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.09 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.99 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.99 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.87 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.67 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.53 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.38 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.17 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.94 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.64 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.39 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.32 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.06 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.05 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 90.95 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.82 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.77 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.52 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.42 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 90.17 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.75 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.7 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.58 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.49 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.46 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.46 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.39 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.31 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.28 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.13 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.41 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.28 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.03 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.86 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.86 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 87.47 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.44 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.44 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.05 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.96 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.71 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 86.52 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.36 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 86.19 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.03 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 86.01 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 85.57 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 85.54 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.49 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 84.91 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.86 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 84.75 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.94 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.86 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 83.73 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.46 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.39 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.04 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 82.77 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 82.76 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.51 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 82.3 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.08 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 81.54 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 80.64 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 80.53 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 80.24 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 80.11 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-81 Score=670.01 Aligned_cols=550 Identities=32% Similarity=0.606 Sum_probs=523.6
Q ss_pred hhhhhcccccccccCCCcchHHHHHHHhcCCC---CchHHHHHHHHHHhCCCCChHHHHHhh----cCCCchhHHHHhhc
Q 042098 5 AKAYSRHLAFTELNDPSLLREKLLSLLKKCPS---TKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQ 77 (566)
Q Consensus 5 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~g~~~~A~~~~~~ 77 (566)
|-..+..+...+..|+..+ |..+++.|+. ....++++..+.+.|+.|+..++++|+ ++|++++|.++|+.
T Consensus 171 A~~~f~~M~~~g~~Pd~~t---~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 247 (857)
T PLN03077 171 ALCLYHRMLWAGVRPDVYT---FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247 (857)
T ss_pred HHHHHHHHHHcCCCCChhH---HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhc
Confidence 3344444444555555444 4445555554 444588999999999999999999998 89999999999999
Q ss_pred CCCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHH
Q 042098 78 ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVS 157 (566)
Q Consensus 78 ~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 157 (566)
|++||.++||++|.+|++. |++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|
T Consensus 248 m~~~d~~s~n~li~~~~~~-g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 248 MPRRDCISWNAMISGYFEN-GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred CCCCCcchhHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCch
Q 042098 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237 (566)
Q Consensus 158 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 237 (566)
|+|+.+|++.|++++|.++|++|..||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 042098 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317 (566)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 317 (566)
.|.++++.+.+.|+.|+..++++|+++|++.|++++|.++|++|.++|..+||.+|.+|++.|+.++|+.+|++|.. ++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred CCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccc-----------cCCHHHHHHHHccCCCCChhHHHHHHHHH
Q 042098 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISAL 386 (566)
Q Consensus 318 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 386 (566)
.||..||+.++.+|++.|.++.+.+++..+.+.|+.++.. +|++++|.++|+.+ .||..+||++|.+|
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHH
Confidence 9999999999999999999999999999999999988876 89999999999999 89999999999999
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 042098 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466 (566)
Q Consensus 387 ~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 466 (566)
++.|+.++|+++|++|.+.| +.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|+++
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g--~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESG--VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcC--CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999 9999999999999999999999999999999976799999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 467 EAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 467 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
+|.+++++|..+|+..+|++|+.+|..+|+.+.++.+.+++.+++|++...|..|+++|...|+|++|.++.+.|+++|+
T Consensus 643 eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 643 EAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeCCccc
Q 042098 547 SKTPGCSWIGIDDPKQ 562 (566)
Q Consensus 547 ~~~~~~~~~~~~~~~~ 562 (566)
+++||+||++++|++|
T Consensus 723 ~k~~g~s~ie~~~~~~ 738 (857)
T PLN03077 723 TVDPGCSWVEVKGKVH 738 (857)
T ss_pred CCCCCccEEEECCEEE
Confidence 9999999999999876
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-73 Score=610.30 Aligned_cols=520 Identities=31% Similarity=0.543 Sum_probs=492.9
Q ss_pred hHHHHHHHhcCC---CCchHHHHHHHHHHhCCCCChHHHHHhh----cCCCchhHHHHhhcCCCCCcchHHHHHHHHHcC
Q 042098 24 REKLLSLLKKCP---STKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96 (566)
Q Consensus 24 ~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 96 (566)
..++..+++.|. ......+++..+.+.|..++..++++++ +.|+++.|+++|+.|++||..+||.+|.+|++.
T Consensus 86 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~ 165 (857)
T PLN03077 86 EDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKA 165 (857)
T ss_pred hhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhC
Confidence 344555555554 4445588999999999999999999988 899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 042098 97 WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176 (566)
Q Consensus 97 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~ 176 (566)
|++++|+++|++|...|+.||..||+.++.+|+..++++.+.+++..|.+.|+.||..++|+|+.+|++.|+++.|.++
T Consensus 166 -g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 244 (857)
T PLN03077 166 -GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244 (857)
T ss_pred -CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHH
Q 042098 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256 (566)
Q Consensus 177 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 256 (566)
|++|.++|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.||..
T Consensus 245 f~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~ 324 (857)
T PLN03077 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324 (857)
T ss_pred HhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCC
Q 042098 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336 (566)
Q Consensus 257 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 336 (566)
+|++|+.+|++.|++++|.++|++|.++|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCccc-----------cCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 042098 337 LDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405 (566)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~-----------~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 405 (566)
++.|.++++.+.+.|..++.. +|++++|.++|++|..+|+.+|+++|.+|++.|+.++|+.+|++|..
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~- 483 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL- 483 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 999999999999999988765 79999999999999999999999999999999999999999999985
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 042098 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485 (566)
Q Consensus 406 g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 485 (566)
+ ++||..||+.++.+|++.|+.+.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++ .||..+|+
T Consensus 484 ~--~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n 558 (857)
T PLN03077 484 T--LKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWN 558 (857)
T ss_pred C--CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHH
Confidence 5 8999999999999999999999999999999988 99999999999999999999999999999998 68999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhCCChHHHHHHHHHHH-hCCCccCC
Q 042098 486 ALLGACQKQKNTDVSQRVMQLLLEIE-SSNSGNYVISSKIFANLKMWDDSAKMRALMR-EKGVSKTP 550 (566)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~~~~ 550 (566)
+++.+|++.|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.++.
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 99999999999999999999998875 5567889999999999999999999999998 67877653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-73 Score=594.22 Aligned_cols=480 Identities=32% Similarity=0.550 Sum_probs=469.9
Q ss_pred CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCC-CCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHH
Q 042098 80 RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158 (566)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 158 (566)
+++..+|+.+|.++.+. |++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+||
T Consensus 84 ~~~~~~~~~~i~~l~~~-g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVAC-GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcC-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 46778999999999999 99999999999998764 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchh
Q 042098 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238 (566)
Q Consensus 159 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 238 (566)
.++.+|++.|+++.|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 042098 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318 (566)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 318 (566)
+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|+.|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccc-----------cCCHHHHHHHHccCCCCChhHHHHHHHHHH
Q 042098 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387 (566)
Q Consensus 319 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 387 (566)
||..||+.++.+|++.|.++.|.+++..+.+.|+.++.. +|++++|.++|++|..||+.+||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 999999999999999999999999999999999998876 799999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 042098 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467 (566)
Q Consensus 388 ~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 467 (566)
+.|+.++|+++|++|.+.| +.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++
T Consensus 403 ~~G~~~~A~~lf~~M~~~g--~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEG--VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 9999999999999999999 99999999999999999999999999999999877999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
|.+++++|..+|+..+|++++.+|...|+++.|..+++++.+.+|++...|..++++|.+.|+|++|.+++++|+++|+.
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEeCCccc
Q 042098 548 KTPGCSWIGIDDPKQ 562 (566)
Q Consensus 548 ~~~~~~~~~~~~~~~ 562 (566)
++||+||++++++++
T Consensus 561 k~~g~s~i~~~~~~~ 575 (697)
T PLN03081 561 MHPACTWIEVKKQDH 575 (697)
T ss_pred cCCCeeEEEECCeEE
Confidence 999999999998876
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=544.41 Aligned_cols=497 Identities=19% Similarity=0.243 Sum_probs=458.0
Q ss_pred HHHhcCCCCchHHHHHHHHHHhCCCCCh-HHHHHhh----cCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHH
Q 042098 29 SLLKKCPSTKTVQQIHTQMLINFIQKPN-FLLIRII----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHS 103 (566)
Q Consensus 29 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 103 (566)
.-+..+++..++.++++.|.+.|+.++. .+++.++ +.|.+++|..+|+.|+.||..+||.+|.+|++. |+++.|
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~-g~~e~A 456 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASS-QDIDGA 456 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhC-cCHHHH
Confidence 3334568888899999999999976544 4444343 789999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-
Q 042098 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE- 182 (566)
Q Consensus 104 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~- 182 (566)
.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred ---CChhHHHHHHHHHHhcCChhHHHHHHHHhHH--CCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHH
Q 042098 183 ---RDLVSWNSMISGYSKMGYAKEAVELFGRMRE--EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257 (566)
Q Consensus 183 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 257 (566)
||..+||.+|.+|++.|++++|.++|++|.. .|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 8999999999999999999999999999976 67999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 042098 258 GSALIDMYGKCGALVPARRVFDAMV----NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333 (566)
Q Consensus 258 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 333 (566)
|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999994 479999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH
Q 042098 334 IGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413 (566)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~ 413 (566)
.|++++|..+|+.|...|+. ||..+||+||.+|++.|++++|.++|++|...| +.||.
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~--------------------PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G--i~Pd~ 754 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLR--------------------PTVSTMNALITALCEGNQLPKALEVLSEMKRLG--LCPNT 754 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCC--------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCCH
Confidence 99999999999999988876 679999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----c-------------------CCHHHHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR----A-------------------GHLSEAWD 470 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~ 470 (566)
.||+.++.+|++.|+++.|.++|++|.+. |+.||..+|++++..+.+ + +..++|..
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 99999999999999999999999999998 999999999999876432 2 12467999
Q ss_pred HHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 471 FVERMPEK---VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI-ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 471 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
+|++|.+. |+..+|+.++.++++.+..+.+..+++.+... .+++..+|..+++.+.+. .++|..++++|.+.|+
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 99999874 99999999998888889999999888887644 467788999999987322 3689999999999999
Q ss_pred ccCCc
Q 042098 547 SKTPG 551 (566)
Q Consensus 547 ~~~~~ 551 (566)
.++.-
T Consensus 912 ~p~~~ 916 (1060)
T PLN03218 912 VPSVS 916 (1060)
T ss_pred CCCcc
Confidence 88664
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-64 Score=524.81 Aligned_cols=468 Identities=17% Similarity=0.260 Sum_probs=435.7
Q ss_pred CChHHHHHhhcCCCchhHHHHhhcCCCCC-----cchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 042098 54 KPNFLLIRIIDLKDFNYASLLFHQISRPN-----EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128 (566)
Q Consensus 54 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 128 (566)
+...+|+.+++.|++++|+++|+.|++++ ..+++.++.+|.+. |.+++|..+++.|.. ||..+|+.+|.+
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~-g~~~eAl~lf~~M~~----pd~~Tyn~LL~a 446 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ-RAVKEAFRFAKLIRN----PTLSTFNMLMSV 446 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC-CCHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 44567778889999999999999997544 44667788889999 999999999999974 899999999999
Q ss_pred HHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC----CCChhHHHHHHHHHHhcCChhHH
Q 042098 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR----ERDLVSWNSMISGYSKMGYAKEA 204 (566)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a 204 (566)
|++.|+++.|.++|+.|.+.|+.||..+|+++|.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999998 48999999999999999999999
Q ss_pred HHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHH--hCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 042098 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK--NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282 (566)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 282 (566)
+++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.. .++.||..+|+++|.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 6789999999999999999999999999999995
Q ss_pred C----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCcccc
Q 042098 283 N----KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC 358 (566)
Q Consensus 283 ~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 358 (566)
+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|..+++.|.+.|+.
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~----- 681 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK----- 681 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----
Confidence 4 6779999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHH
Q 042098 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438 (566)
Q Consensus 359 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 438 (566)
||..+|+++|.+|++.|++++|.++|++|.+.| +.||..+|+.||.+|++.|++++|.++|++
T Consensus 682 ---------------pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g--~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 682 ---------------LGTVSYSSLMGACSNAKNWKKALELYEDIKSIK--LRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred ---------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 678999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHh----------------------
Q 042098 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK---VDEIVLGALLGACQK---------------------- 493 (566)
Q Consensus 439 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~---------------------- 493 (566)
|... |+.||..+|+.++.+|++.|++++|.+++++|.+. |+..+|++++..|.+
T Consensus 745 M~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~ 823 (1060)
T PLN03218 745 MKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQI 823 (1060)
T ss_pred HHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Confidence 9988 99999999999999999999999999999999764 999999999876542
Q ss_pred -cCCHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 042098 494 -QKNTDVSQRVMQLLLEIE-SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549 (566)
Q Consensus 494 -~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 549 (566)
.+..+.|..+|++|.+.+ .++..+|..++.++...+.++.+.++++.|...+..++
T Consensus 824 ~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~ 881 (1060)
T PLN03218 824 ENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQK 881 (1060)
T ss_pred ccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcc
Confidence 123478999999999987 66788999999999999999999999998877665543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-63 Score=516.13 Aligned_cols=427 Identities=28% Similarity=0.482 Sum_probs=405.7
Q ss_pred chHHHHHHHhcC---CCCchHHHHHHHHHHhCCCCChHHHHHhh----cCCCchhHHHHhhcCCCCCcchHHHHHHHHHc
Q 042098 23 LREKLLSLLKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTT 95 (566)
Q Consensus 23 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 95 (566)
...+|..++.+| +......+++..|.+.|+.|+..+++.++ ++|+++.|.++|+.|++||.++||++|.+|++
T Consensus 122 ~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~ 201 (697)
T PLN03081 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVD 201 (697)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHH
Confidence 344555555555 45555689999999999999999999999 89999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 042098 96 AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175 (566)
Q Consensus 96 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~ 175 (566)
. |++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..++|+|+++|+++|++++|.+
T Consensus 202 ~-g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 280 (697)
T PLN03081 202 A-GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280 (697)
T ss_pred C-cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHH
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchH
Q 042098 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255 (566)
Q Consensus 176 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (566)
+|++|.++|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||.
T Consensus 281 vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred HHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 042098 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335 (566)
Q Consensus 256 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 335 (566)
.++++|+++|+++|++++|.++|++|.++|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHH-hCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH
Q 042098 336 ALDLGKWVDKYASQ-RGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414 (566)
Q Consensus 336 ~~~~a~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~ 414 (566)
.+++|..+|+.|.+ .|+. |+..+|++++++|++.|++++|.+++++| + +.|+..
T Consensus 441 ~~~~a~~~f~~m~~~~g~~--------------------p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~--~~p~~~ 495 (697)
T PLN03081 441 LSEQGWEIFQSMSENHRIK--------------------PRAMHYACMIELLGREGLLDEAYAMIRRA---P--FKPTVN 495 (697)
T ss_pred cHHHHHHHHHHHHHhcCCC--------------------CCccchHhHHHHHHhcCCHHHHHHHHHHC---C--CCCCHH
Confidence 99999999999976 5776 67889999999999999999999999876 3 789999
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK 478 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 478 (566)
+|+.|+.+|...|+++.|..+++.+. ++.|+ ..+|..|+++|++.|++++|.++++.|.++
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~---~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLY---GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHh---CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999886 56776 679999999999999999999999999764
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-29 Score=276.16 Aligned_cols=516 Identities=12% Similarity=0.060 Sum_probs=339.8
Q ss_pred cCCCcchHHHHHHHhcCCCCchHHHHHHHHHHhCCCCChHHHHH----hhcCCCchhHHHHhhcCCC---CCcchHHHHH
Q 042098 18 NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIR----IIDLKDFNYASLLFHQISR---PNEYAFNVMI 90 (566)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~g~~~~A~~~~~~~~~---~~~~~~~~ll 90 (566)
|.+......+..++...++...+..++..+...... +..++.. +.+.|++++|.+.|+.+.+ .+...|..+.
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 404 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG 404 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 334444556666677777777777766666555422 2333322 2278888888888887632 3445666677
Q ss_pred HHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 042098 91 RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL 170 (566)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 170 (566)
..+... |++++|++.|+.+.+.... +......++..+.+.|++++|.++++.+... .+.+..++..+...+...|++
T Consensus 405 ~~~~~~-~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 481 (899)
T TIGR02917 405 ISKLSQ-GDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDL 481 (899)
T ss_pred HHHHhC-CChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCH
Confidence 777777 8888888888888765422 3344455666777778888888887777664 344566777777777777888
Q ss_pred HHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 042098 171 DSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247 (566)
Q Consensus 171 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 247 (566)
++|...|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+...|+.++|...+..+.
T Consensus 482 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 482 AKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888877777643 344566667777777777777777777776643 2345566667777777777777777777776
Q ss_pred HhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 042098 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324 (566)
Q Consensus 248 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 324 (566)
+.++. +...+..++..+...|++++|..+++.+.+ .+...|..+...+.+.|++++|+..|+++.+.. +.+...+
T Consensus 561 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 561 ELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALAL 638 (899)
T ss_pred HhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 65543 344556677777777777777777777633 345667777777777777777777777776643 2344556
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCccc----------cCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCC
Q 042098 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------CGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGR 391 (566)
Q Consensus 325 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~ 391 (566)
..+..++...|+.++|..+++.+.+........ .|++++|..+++.+. +++...+..+...+...|+
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC
Confidence 666666777777777777777766543321111 567777777776664 3455566666677777777
Q ss_pred hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 042098 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471 (566)
Q Consensus 392 ~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 471 (566)
+++|...|+++...+ |+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|...|++++|.+.
T Consensus 719 ~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 719 YPAAIQAYRKALKRA----PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred HHHHHHHHHHHHhhC----CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 777777777776643 44456666666777777777777777766653 233455666667777777777777777
Q ss_pred HHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 472 VERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 472 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
|+++... ++...++.+...+...|+ .+|+..++++.+..|+++..+..++.++...|++++|.++++++.+.+..
T Consensus 793 ~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 793 YRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7766542 445566666666666666 66777777777666666666666777777777777777777776665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-29 Score=275.73 Aligned_cols=505 Identities=11% Similarity=0.016 Sum_probs=300.7
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhCCCCChHHHHH----hhcCCCchhHHHHhhcCCC---CCcchHHHHHHHHHcCC
Q 042098 25 EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIR----IIDLKDFNYASLLFHQISR---PNEYAFNVMIRGLTTAW 97 (566)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~ 97 (566)
..+..++...++...+...++.+.+.... +...+.. +...|++++|.+.|+...+ .+...+..++..+.+.
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~- 444 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS- 444 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc-
Confidence 34444445555555555555555443221 1111111 1256666666666665522 1233444555566666
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~ 177 (566)
|++++|+.+++.+.+. .+++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6667777666666553 23455566666666666667777777666666543 233445555666666666777666666
Q ss_pred hccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCch
Q 042098 178 DEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254 (566)
Q Consensus 178 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (566)
+.+.+ .+..++..+...+.+.|+.++|..+++++...+ +.+...+..+...+...|++++|..+++.+.+..+ .+
T Consensus 523 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 600 (899)
T TIGR02917 523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DS 600 (899)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CC
Confidence 66543 245566666666666666777776666665542 22344555566666666667776666666655433 24
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042098 255 FYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331 (566)
Q Consensus 255 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 331 (566)
..++..+..++...|++++|...|+.+.+ .+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45566666666666777777666666532 244456666666666667777777666666542 22345566666666
Q ss_pred hccCChhHHHHHHHHHHHhCCCCccc----------cCCHHHHHHHHccCC--CCChhHHHHHHHHHHHcCChHHHHHHH
Q 042098 332 ASIGALDLGKWVDKYASQRGLRHDIF----------CGSIDDALKVFEDMP--VTNEVSWNAMISALAFNGRAHEALLLF 399 (566)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~ 399 (566)
...|+.++|..+++.+.+........ .|++++|...|+.+. .|+..++..++.++.+.|++++|...+
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666666666544322111 466666666666554 344455566666666667777777666
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-
Q 042098 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK- 478 (566)
Q Consensus 400 ~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 478 (566)
+++.+.. +.+...+..+...|...|+.++|.+.|+++.+. .+++..++..+...+...|+ .+|+.++++....
T Consensus 760 ~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 760 EAWLKTH---PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 6666543 345556666666666667777777776666653 12335566666666666666 6666666665432
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 479 -VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 479 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
.+...+..+...+...|++++|.+.++++++.+|.++.++..++.++.+.|++++|.+++++|.
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3344555566666666677777777777766666666666666677777777777776666654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-21 Score=211.77 Aligned_cols=473 Identities=11% Similarity=0.019 Sum_probs=299.0
Q ss_pred cCCCchhHHHHhhcCCC--CCcchH-----------------HHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcc-cHH
Q 042098 64 DLKDFNYASLLFHQISR--PNEYAF-----------------NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNF-TYP 123 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~ 123 (566)
+.|+.++|.+.+++..+ |+...+ ..+...+.+. |++++|+..|+.+.+.+ +|+.. ...
T Consensus 74 ~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~-g~~~eA~~~~~~~l~~~-p~~~~la~~ 151 (1157)
T PRK11447 74 RQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATT-GRTEEALASYDKLFNGA-PPELDLAVE 151 (1157)
T ss_pred hCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhC-CCHHHHHHHHHHHccCC-CCChHHHHH
Confidence 78888888888887743 333222 1222356667 88888888888887643 22321 111
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------------------
Q 042098 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD------------------- 184 (566)
Q Consensus 124 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~------------------- 184 (566)
.........|+.++|.+.++.+.+.. +-+...+..+...+...|+.++|+..++++.+..
T Consensus 152 y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~ 230 (1157)
T PRK11447 152 YWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPV 230 (1157)
T ss_pred HHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCC
Confidence 11122234578888888888887764 3355667777788888888888888877653210
Q ss_pred ----hhHH----------------------------------HHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 042098 185 ----LVSW----------------------------------NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSV 226 (566)
Q Consensus 185 ----~~~~----------------------------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 226 (566)
...+ ......+...|++++|+..|++..+.. +.+...+..+
T Consensus 231 ~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~L 309 (1157)
T PRK11447 231 SDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGAL 309 (1157)
T ss_pred ChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 0000 011334566788999999998887742 2256777788
Q ss_pred HHHhcCCCCchhHHHHHHHHHHhCCCchH-HHH------------HHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHH
Q 042098 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNF-YMG------------SALIDMYGKCGALVPARRVFDAMVN--K-DVVTWN 290 (566)
Q Consensus 227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------------~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~ 290 (566)
...+.+.|++++|...+++..+..+.... ..+ ......+.+.|++++|...|++..+ | +...+.
T Consensus 310 g~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~ 389 (1157)
T PRK11447 310 GQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVL 389 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88888899999999999988876654321 111 1224567788999999999988744 2 455677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCChhHHHHHHHHHHHhC----------CCCcc---
Q 042098 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPD-KITLIGVLSACASIGALDLGKWVDKYASQRG----------LRHDI--- 356 (566)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----------~~~~~--- 356 (566)
.+...+...|++++|++.|++..+. .|+ ...+..+...+. .++.++|..+++.+.... +..+.
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 466 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ 466 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence 7888888999999999999988875 333 344444444443 345677766654432211 00000
Q ss_pred ------ccCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC
Q 042098 357 ------FCGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427 (566)
Q Consensus 357 ------~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g 427 (566)
..|++++|.+.|++.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...+
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~---P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK---PNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHhCC
Confidence 1478888888888765 4456677778888888888888888888887643 122222222222233334
Q ss_pred cHHHHHHHHHHhHHh-------------------------------------c-CCCCChhHHHHHHHHHHhcCCHHHHH
Q 042098 428 LVDEGRRLFDLMSSS-------------------------------------F-GLIPKSEHYSCMVDLYARAGHLSEAW 469 (566)
Q Consensus 428 ~~~~A~~~~~~~~~~-------------------------------------~-~~~p~~~~~~~l~~~~~~~g~~~~A~ 469 (566)
+.++|...++.+... . ..+.+...+..+...+.+.|++++|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 444444433332110 0 01223445566667777777777777
Q ss_pred HHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 470 DFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 470 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
+.|++.... .+...+..++..+...|+.++|++.++++.+..|+++..+..++.++...|++++|.++++++.....
T Consensus 624 ~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 624 AAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 777776542 34566677777777777777777777777777777777777777777777777777777777766543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-21 Score=210.14 Aligned_cols=401 Identities=12% Similarity=0.068 Sum_probs=309.9
Q ss_pred HHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh---hHHH------------
Q 042098 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDL---VSWN------------ 189 (566)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~------------ 189 (566)
..+...|++++|...|++.++.. +.+...+..+...+.+.|++++|+..|++..+ |+. ..|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 44567799999999999998864 34677888899999999999999999988764 221 1121
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Q 042098 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269 (566)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 269 (566)
.....+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...|+.+.+..+. +...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hc
Confidence 12345678899999999999988753 234556677788889999999999999999887654 3344566666664 46
Q ss_pred CHHHHHHHHhcCCCCC------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCC
Q 042098 270 ALVPARRVFDAMVNKD------------VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD-KITLIGVLSACASIGA 336 (566)
Q Consensus 270 ~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 336 (566)
+.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+.+.|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7899998888774321 123445667788899999999999999885 443 4566677788999999
Q ss_pred hhHHHHHHHHHHHhCCC-Cccc---------cCCHHHHHHHHccCCCC----Ch---------hHHHHHHHHHHHcCChH
Q 042098 337 LDLGKWVDKYASQRGLR-HDIF---------CGSIDDALKVFEDMPVT----NE---------VSWNAMISALAFNGRAH 393 (566)
Q Consensus 337 ~~~a~~~~~~~~~~~~~-~~~~---------~~~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~~~~~ 393 (566)
+++|...++.+.+.... ++.. .++.++|...++.+... +. ..+..+...+...|+.+
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99999999998874432 2211 58889999999887622 11 12234567788999999
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 042098 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFV 472 (566)
Q Consensus 394 ~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 472 (566)
+|..+++. .+++...+..+...+.+.|++++|+..|+...+. .|+ ...+..++..|...|++++|++.+
T Consensus 591 eA~~~l~~-------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 591 EAEALLRQ-------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHHHHh-------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999872 3456667778888999999999999999999865 555 778899999999999999999999
Q ss_pred HhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 473 ERMPEK-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS------GNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 473 ~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
+..... | +...+..+..++...|++++|.+++++++...|+++ ..+..++.++...|++++|...++++..
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 988764 3 455667778889999999999999999998876543 3666779999999999999999999863
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-18 Score=182.52 Aligned_cols=513 Identities=8% Similarity=-0.038 Sum_probs=331.6
Q ss_pred CcchHHHHHHHhcCCCCchHHHHHHHHHHhCCCCChHHHHHhhcCCCchhHHHHhhcCC--CCC-cchHHHHHHHH----
Q 042098 21 SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQIS--RPN-EYAFNVMIRGL---- 93 (566)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~--~~~-~~~~~~ll~~~---- 93 (566)
......+..++...++...+....+...+... .+...+..+...+++++|..+++++. .|+ ...+..+....
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~ 156 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLAAIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQN 156 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccc
Confidence 34445556666666777776666666655532 23333333445688888888888883 343 34444444330
Q ss_pred -HcCCCChhHHHHHHHHHHHCCCCCCcccHHHH-HHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCH
Q 042098 94 -TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV-FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYAR-CGKL 170 (566)
Q Consensus 94 -~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~ 170 (566)
.+- .++++|.+.++ .......|+..+.... ...|.+.++++.|.+++..+.+.+ +.+......|..+|.. .++
T Consensus 157 ~l~y-~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~- 232 (987)
T PRK09782 157 ALRL-AQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD- 232 (987)
T ss_pred hhhh-hhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-
Confidence 111 33455555555 3333334445545555 788888899999999999998876 3345556666667776 366
Q ss_pred HHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCC-CCHHHHHHH-----------------------
Q 042098 171 DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSV----------------------- 226 (566)
Q Consensus 171 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~~~l----------------------- 226 (566)
+.+..+++...+.+...+..+...|.+.|+.++|..+++++...-.. |...++..+
T Consensus 233 ~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~ 312 (987)
T PRK09782 233 DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNR 312 (987)
T ss_pred HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHH
Confidence 88888877655567888888888899999999998888887543211 222222211
Q ss_pred -------HHHhcCCCCchhHHHHH-----------------------------HHHHHhCCCchHHHHHHHHHHHHhcCC
Q 042098 227 -------LGSCGDLGDLVLGKWVE-----------------------------GFVVKNKMDLNFYMGSALIDMYGKCGA 270 (566)
Q Consensus 227 -------l~~~~~~~~~~~a~~~~-----------------------------~~~~~~~~~~~~~~~~~li~~~~~~g~ 270 (566)
+..+.+.++++.++++. ..+.+..+ -+....--+.-...+.|+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 313 QYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccc
Confidence 22233333333333221 11111111 012222223334456788
Q ss_pred HHHHHHHHhcCCC-C-----ChhHHHHHHHHHHHcCC---HHHHHHH------------H----------HHHHH-CCCC
Q 042098 271 LVPARRVFDAMVN-K-----DVVTWNAMITAYAQNGL---SNEAIML------------F----------NRMKY-AGVN 318 (566)
Q Consensus 271 ~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~---~~~a~~~------------~----------~~m~~-~g~~ 318 (566)
.++|.++|+.... + +....+-++..|.+.+. ..++..+ . ..... .+..
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 8888888887743 1 22344456666666655 3333333 1 11111 1122
Q ss_pred C---CHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccc---------cCCHHHHHHHHccCC--CCChhHHHHHHH
Q 042098 319 P---DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------CGSIDDALKVFEDMP--VTNEVSWNAMIS 384 (566)
Q Consensus 319 p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~~~--~~~~~~~~~li~ 384 (566)
| +...+..+..++.. ++.++|...+............. .|++++|...|+.+. +|+...+..+..
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~ 550 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAAN 550 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 2 34445555545444 77777887666655543221101 688999999998765 455556677778
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 042098 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464 (566)
Q Consensus 385 ~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 464 (566)
++.+.|++++|...+++..+.+ +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|+
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~---P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG---LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCC
Confidence 8899999999999999998754 223333333444455669999999999999854 6788889999999999999
Q ss_pred HHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 465 LSEAWDFVERMPEK-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 465 ~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
+++|+..+++.... | +...+..+..++...|+.++|+..++++++..|+++..+..++.++...|++++|+..+++..
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999988763 4 556677778899999999999999999999999999999999999999999999999999998
Q ss_pred hCCC
Q 042098 543 EKGV 546 (566)
Q Consensus 543 ~~g~ 546 (566)
+...
T Consensus 705 ~l~P 708 (987)
T PRK09782 705 DDID 708 (987)
T ss_pred hcCC
Confidence 7653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-20 Score=172.09 Aligned_cols=382 Identities=14% Similarity=0.102 Sum_probs=216.7
Q ss_pred CcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCh--hHH-HHHHHH
Q 042098 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL--VSW-NSMISG 194 (566)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~-~~li~~ 194 (566)
-..+|..+...+...|++..|..+++.+++.. +-....|.-+..++...|+.+.|...|.+..+-|+ ... +.+-..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 44555556666666666666666666665542 12344555555566666666666665555554222 211 122223
Q ss_pred HHhcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHH
Q 042098 195 YSKMGYAKEAVELFGRMREEEFLPD-EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273 (566)
Q Consensus 195 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 273 (566)
+-..|+.++|...|.+..+ ..|. ...|+.+...+-..|+.-.|.+-|++.++.++.. ...|-.|.+.|...+.++.
T Consensus 194 lka~Grl~ea~~cYlkAi~--~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f-~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIE--TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-LDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHh--hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc-hHHHhhHHHHHHHHhcchH
Confidence 3334556666666655544 2232 2345555555555666666666666555544332 2234445555666666666
Q ss_pred HHHHHhcCC--CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCChhHHHHHHHHHHH
Q 042098 274 ARRVFDAMV--NK-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD-KITLIGVLSACASIGALDLGKWVDKYASQ 349 (566)
Q Consensus 274 A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 349 (566)
|...|.... +| ....+..+...|..+|..+-|++.|++..+. .|+ ...|+.+..++-..|++.+|...+.....
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 665555542 22 3344555555555666666666666665553 332 34555555565555555555555554444
Q ss_pred hCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhhCc
Q 042098 350 RGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHAGL 428 (566)
Q Consensus 350 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g~ 428 (566)
.... ...+.+.|...|...|.++.|.++|....+ +.|. ...++.|...|-+.|+
T Consensus 349 l~p~---------------------hadam~NLgni~~E~~~~e~A~~ly~~al~----v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 349 LCPN---------------------HADAMNNLGNIYREQGKIEEATRLYLKALE----VFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred hCCc---------------------cHHHHHHHHHHHHHhccchHHHHHHHHHHh----hChhhhhhhhhHHHHHHhccc
Confidence 3221 244566667777777777777777776665 3344 3456666666777777
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 429 VDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE-KVD-EIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 429 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
+++|+..+++.. .+.|+ ...|+.+...|-..|+.+.|++.+.+... +|. ...++.|...+...|+..+|++.++
T Consensus 404 l~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 404 LDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 777777776665 44666 45666777777777777777776666543 233 3455666677777777777777777
Q ss_pred HHHhhCCCCchhHHHHHHHHHhCCChHH
Q 042098 506 LLLEIESSNSGNYVISSKIFANLKMWDD 533 (566)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (566)
.++++.|+.+..|..++.++--..+|.+
T Consensus 481 ~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 481 TALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 7777777777777766666555555544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-20 Score=180.07 Aligned_cols=301 Identities=14% Similarity=0.104 Sum_probs=215.9
Q ss_pred HHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCch---HHHHHHHHHHHHhcCC
Q 042098 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN---FYMGSALIDMYGKCGA 270 (566)
Q Consensus 194 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~ 270 (566)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566666666666665532 11233455555555556666666666555554332211 2345677778888888
Q ss_pred HHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHH
Q 042098 271 LVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347 (566)
Q Consensus 271 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 347 (566)
+++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 8888888888754 3556778888888888888888888888876542221100
Q ss_pred HHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC
Q 042098 348 SQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427 (566)
Q Consensus 348 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g 427 (566)
....+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|
T Consensus 179 ---------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 179 ---------------------------IAHFYCELAQQALARGDLDAARALLKKALAAD---PQCVRASILLGDLALAQG 228 (389)
T ss_pred ---------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCC
Confidence 01235566777888999999999999988753 234567777888899999
Q ss_pred cHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042098 428 LVDEGRRLFDLMSSSFGLIPK--SEHYSCMVDLYARAGHLSEAWDFVERMPE-KVDEIVLGALLGACQKQKNTDVSQRVM 504 (566)
Q Consensus 428 ~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 504 (566)
++++|.++++++... .|+ ..++..++.+|...|++++|.+.++++.. .|+...+..++..+.+.|++++|..++
T Consensus 229 ~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 229 DYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred CHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999998864 344 45678889999999999999999998765 377777788889999999999999999
Q ss_pred HHHHhhCCCCchhHHHHHHHHHh---CCChHHHHHHHHHHHhCCCccCCcee
Q 042098 505 QLLLEIESSNSGNYVISSKIFAN---LKMWDDSAKMRALMREKGVSKTPGCS 553 (566)
Q Consensus 505 ~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~~~ 553 (566)
+++++..|++.. +..+...+.. .|+.+++..++++|.+++++++|.+.
T Consensus 306 ~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 306 REQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred HHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 999999888764 4444444443 56999999999999999999988854
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-19 Score=168.28 Aligned_cols=429 Identities=13% Similarity=0.084 Sum_probs=347.2
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 042098 86 FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYA 165 (566)
Q Consensus 86 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 165 (566)
-..|.+-.-+. |++.+|.+.-...-+.+ +.+....-.+-..+.+..+.+...+.-....+. .+.-..+|+.+.+.+-
T Consensus 51 ~l~lah~~yq~-gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQG-GDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhc-cCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence 34455556677 99999998766655443 223333333334455666666655544444433 2345678999999999
Q ss_pred hcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHH-HHHHhcCCCCchhHHH
Q 042098 166 RCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVS-VLGSCGDLGDLVLGKW 241 (566)
Q Consensus 166 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~ 241 (566)
..|++++|+.+++.+.+ ..+..|..+..++...|+.+.|...|.+..+ +.|+.....+ +-......|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999876 3567899999999999999999999998876 6676654433 3344455899999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 042098 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV---VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318 (566)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 318 (566)
-|.+.++..+.. ...|+.|...+...|+...|+..|++...-|+ ..|-.|...|...+.+++|...|.+.... +
T Consensus 206 cYlkAi~~qp~f-AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--r 282 (966)
T KOG4626|consen 206 CYLKAIETQPCF-AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--R 282 (966)
T ss_pred HHHHHHhhCCce-eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--C
Confidence 999888876643 34578899999999999999999999866443 47888999999999999999999887764 5
Q ss_pred CCH-hHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHH
Q 042098 319 PDK-ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397 (566)
Q Consensus 319 p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 397 (566)
|+. ..+..+...|...|.++.|...+++....... -..+|+.|..++-..|+..+|.+
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~---------------------F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN---------------------FPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC---------------------chHHHhHHHHHHHhccchHHHHH
Confidence 654 56677777789999999999999999875433 25689999999999999999999
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 398 ~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
.|.+..... +-...+.+.|...+...|.+++|..+|.... .+.|. ....+.|...|-+.|++++|+..|++..
T Consensus 342 cYnkaL~l~---p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 342 CYNKALRLC---PNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHhC---CccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 999998863 3446788999999999999999999998877 45777 6788999999999999999999999876
Q ss_pred C-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 042098 477 E-KVD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549 (566)
Q Consensus 477 ~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 549 (566)
. +|+ ...++.+...|-..|+.+.|.+.+.+++..+|.-...+..|+.+|...|+..+|+.-+++..+.....+
T Consensus 416 rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 416 RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 5 354 568899999999999999999999999999999999999999999999999999999999988765543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-17 Score=176.36 Aligned_cols=461 Identities=11% Similarity=-0.034 Sum_probs=303.8
Q ss_pred cCCCchhHHHHhhcCC---CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHH
Q 042098 64 DLKDFNYASLLFHQIS---RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 140 (566)
..|++++|+..|+... +.+..++..+...|.+. |++++|+..+++..+. .|+...|..++..+ ++.++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~-g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHF-GHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 5699999999998873 23456778888888898 9999999999998876 45555555544333 88889999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHH--------HHhcCCHHHHHHHHhccCCC--ChhHHHH-HHHHHHhcCChhHHHHHHH
Q 042098 141 VHSSVFKIGLDEDDHVSHSLITM--------YARCGKLDSARKVFDEIRER--DLVSWNS-MISGYSKMGYAKEAVELFG 209 (566)
Q Consensus 141 ~~~~~~~~g~~~~~~~~~~li~~--------~~~~~~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~~~~~~a~~~~~ 209 (566)
+++++.+.. +-+..++..+... |.+.++..++++ .....+ +..+... ..+.|.+.|++++|++.+.
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999998874 3345555555554 666666666666 222233 3443344 4788999999999999999
Q ss_pred HhHHCCCCCCHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC-----
Q 042098 210 RMREEEFLPDEITLVSVLGSCGD-LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN----- 283 (566)
Q Consensus 210 ~m~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 283 (566)
++.+.+... ..-...+-.++.. .++ +.+..++.. .+..+..+...++..|.+.|+.++|.++++++..
T Consensus 207 ~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 998875433 3334455556665 355 666666442 3335677778888888889999888888888732
Q ss_pred CChhHH------------------------------HHHHHHH-------------------------------------
Q 042098 284 KDVVTW------------------------------NAMITAY------------------------------------- 296 (566)
Q Consensus 284 ~~~~~~------------------------------~~li~~~------------------------------------- 296 (566)
|...+| -.++..+
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 110000 0011122
Q ss_pred --------------------------HHcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHhccCCh---hHHHH---
Q 042098 297 --------------------------AQNGLSNEAIMLFNRMKYA--GVNPDKITLIGVLSACASIGAL---DLGKW--- 342 (566)
Q Consensus 297 --------------------------~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~---~~a~~--- 342 (566)
.+.|+.++|.++|+..... +..++.....-++..+.+.+.+ ..+..
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 2344555555555555431 1122222233444555444331 11111
Q ss_pred -------------------HHHHHHH-hCCCCc--cc-----------cCCHHHHHHHHccCC--CCChhHHHHHHHHHH
Q 042098 343 -------------------VDKYASQ-RGLRHD--IF-----------CGSIDDALKVFEDMP--VTNEVSWNAMISALA 387 (566)
Q Consensus 343 -------------------~~~~~~~-~~~~~~--~~-----------~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~ 387 (566)
....... .+..|+ .. .++.++|...|.+.. .|+......+...+.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~ 520 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAY 520 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 1111111 111111 00 245556776555544 444333333444456
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHH
Q 042098 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLS 466 (566)
Q Consensus 388 ~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 466 (566)
..|++++|...++++... +|+...+..+..++.+.|+.++|...++...+. .|+ ...+..+...+.+.|+++
T Consensus 521 ~~Gr~eeAi~~~rka~~~----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 521 QVEDYATALAAWQKISLH----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---GLGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HCCCHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHhCCCHH
Confidence 889999999999887653 355555666677788899999999999888764 344 333434444555669999
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 467 EAWDFVERMPE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 467 ~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
+|+..+++... .|+...+..+..++.+.|+.++|+..++++++.+|+++..+..++.++...|++++|+..++++.+..
T Consensus 594 eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 594 LALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999998876 38888999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 042098 546 V 546 (566)
Q Consensus 546 ~ 546 (566)
.
T Consensus 674 P 674 (987)
T PRK09782 674 P 674 (987)
T ss_pred C
Confidence 4
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-18 Score=174.03 Aligned_cols=416 Identities=13% Similarity=0.036 Sum_probs=285.0
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 042098 86 FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYA 165 (566)
Q Consensus 86 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 165 (566)
+......+.+. |++++|+..|++..+. .|+...|..+..++.+.|++++|.+.++..++.. +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~-~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRN-KDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 34455677778 9999999999998864 5777888888888899999999999999988764 334567888888999
Q ss_pred hcCCHHHHHHHHhccCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCC--CCCHHHHHHHHHHhcCCCCchhHH
Q 042098 166 RCGKLDSARKVFDEIRER---DLVSWNSMISGYSKMGYAKEAVELFGRMREEEF--LPDEITLVSVLGSCGDLGDLVLGK 240 (566)
Q Consensus 166 ~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~ 240 (566)
..|++++|+.-|...... +......++..+.. ..+........+... .|...........+ ......
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSF----RPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc----cCCcch
Confidence 999999998877654321 11111122221111 122222222222111 12222111111111 111111
Q ss_pred HHHHHHHHhCCCchH-HHHHHHHHH---HHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHHcCCHHHHHHHHH
Q 042098 241 WVEGFVVKNKMDLNF-YMGSALIDM---YGKCGALVPARRVFDAMVNK------DVVTWNAMITAYAQNGLSNEAIMLFN 310 (566)
Q Consensus 241 ~~~~~~~~~~~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~ 310 (566)
.-+....+ ..+.. ..+..+... ....+++++|.+.|+...+. +...|+.+...+...|++++|+..|+
T Consensus 278 ~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11111111 11110 000111100 12346788999998887532 34467788888889999999999999
Q ss_pred HHHHCCCCCC-HhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHc
Q 042098 311 RMKYAGVNPD-KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389 (566)
Q Consensus 311 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 389 (566)
+..+. .|+ ...|..+...+...|++++|...++.+.+... .+...|..+...+...
T Consensus 356 kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---------------------~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 356 KSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS---------------------EDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHc
Confidence 98875 454 44677777778888888888887777665432 3567888999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 042098 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEA 468 (566)
Q Consensus 390 ~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 468 (566)
|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+. .|+ ...+..+..++...|++++|
T Consensus 413 g~~~~A~~~~~kal~l~---P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLD---PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred CCHHHHHHHHHHHHHcC---ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHH
Confidence 99999999999999864 335667777888899999999999999998864 454 67888999999999999999
Q ss_pred HHHHHhCCCC-CCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHH
Q 042098 469 WDFVERMPEK-VDE-I-------VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 469 ~~~~~~~~~~-~~~-~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 539 (566)
++.|++...- |+. . .++..+..+...|++++|.++++++++.+|++...+..++.++.+.|++++|.+.++
T Consensus 487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999986542 321 1 112222233446999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 042098 540 LMREK 544 (566)
Q Consensus 540 ~~~~~ 544 (566)
+..+.
T Consensus 567 ~A~~l 571 (615)
T TIGR00990 567 RAAEL 571 (615)
T ss_pred HHHHH
Confidence 98765
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-17 Score=171.72 Aligned_cols=395 Identities=8% Similarity=-0.042 Sum_probs=229.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCC
Q 042098 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGY 200 (566)
Q Consensus 124 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 200 (566)
-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..++++..+ .+...+..+...+...|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 33444445555555555555544311 22333445555555555555555555555322 233444455555555555
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 042098 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280 (566)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 280 (566)
+++|+..+++..+. .+.+.. +..+..++...|+.++|...++.+.+..+.. ...+..+..++...|..++|.+.++.
T Consensus 99 ~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~-~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT-QQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 55555555555443 111223 4444455555555555555555555554442 22233455566666666667766666
Q ss_pred CCCCChh--------HHHHHHHHH-----HHcCCH---HHHHHHHHHHHHC-CCCCCHh-HHH----HHHHHHhccCChh
Q 042098 281 MVNKDVV--------TWNAMITAY-----AQNGLS---NEAIMLFNRMKYA-GVNPDKI-TLI----GVLSACASIGALD 338 (566)
Q Consensus 281 ~~~~~~~--------~~~~li~~~-----~~~~~~---~~a~~~~~~m~~~-g~~p~~~-~~~----~ll~~~~~~g~~~ 338 (566)
... ++. ....++... ...+++ ++|+..++.+.+. ...|+.. .+. ..+.++...|+.+
T Consensus 176 ~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 176 ANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 544 111 111122211 112233 6677777777653 2223221 111 1123334555566
Q ss_pred HHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC--CHHHH
Q 042098 339 LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP--NDVTF 416 (566)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p--~~~t~ 416 (566)
+|...++.+.+.+... |+ ..-..+..+|...|++++|+..|+++.+..+ ..+ .....
T Consensus 255 eA~~~~~~ll~~~~~~-------------------P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p-~~~~~~~~~~ 313 (765)
T PRK10049 255 DVISEYQRLKAEGQII-------------------PP-WAQRWVASAYLKLHQPEKAQSILTELFYHPE-TIADLSDEEL 313 (765)
T ss_pred HHHHHHHHhhccCCCC-------------------CH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC-CCCCCChHHH
Confidence 6655555554433110 11 1122246678888999999999888876431 110 13445
Q ss_pred HHHHHHHhhhCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCH
Q 042098 417 IGVLSACVHAGLVDEGRRLFDLMSSSFG----------LIPK---SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDE 481 (566)
Q Consensus 417 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 481 (566)
..+..++...|++++|.++++.+..... -.|+ ...+..+...+...|++++|+++++++... .+.
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~ 393 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ 393 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 5666677888999999998888875410 1122 124456777888889999999999887653 456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
..+..+...+...|+.++|++.++++++.+|++...+..++..+...|++++|..+++++.+.
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 677778888888999999999999999999999888888888999999999999998888654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-18 Score=170.79 Aligned_cols=298 Identities=13% Similarity=0.050 Sum_probs=174.0
Q ss_pred HHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCC
Q 042098 93 LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED---DHVSHSLITMYARCGK 169 (566)
Q Consensus 93 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~~~ 169 (566)
+... |++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+.+.+..++ ...+..+...|.+.|+
T Consensus 45 ~~~~-~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLN-EQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhc-CChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445 67777777777777653 22444566666667777777777777777665432211 1345556666666666
Q ss_pred HHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 042098 170 LDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246 (566)
Q Consensus 170 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 246 (566)
+++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 6666666666654 3445666666666666666666666666655432221100
Q ss_pred HHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042098 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323 (566)
Q Consensus 247 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 323 (566)
....+..+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|.++++++.+.+......+
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 011223445555556666666666665532 2 233555566666666666667666666665422111234
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 042098 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403 (566)
Q Consensus 324 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 403 (566)
+..+..++...|+.++|...++.+.+.. |+...+..++..+.+.|++++|..+++++.
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~----------------------p~~~~~~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY----------------------PGADLLLALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCchHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4455555555555555555444444321 233344666777777788888888887777
Q ss_pred hCCCCCCCCHHHHHHHHHHHhh---hCcHHHHHHHHHHhHHhcCCCCChh
Q 042098 404 KEGGAARPNDVTFIGVLSACVH---AGLVDEGRRLFDLMSSSFGLIPKSE 450 (566)
Q Consensus 404 ~~g~~~~p~~~t~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~p~~~ 450 (566)
+. .|+..++..++..+.. .|+.+++..+++.+.++ ++.|++.
T Consensus 310 ~~----~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 310 RR----HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred Hh----CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 64 3777777777766554 44777777777777766 6666654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-17 Score=170.53 Aligned_cols=373 Identities=8% Similarity=-0.065 Sum_probs=258.8
Q ss_pred HHccCChhHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhH
Q 042098 129 CANLLALNHGVSVHSSVFKIGL--DEDDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKE 203 (566)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 203 (566)
+.++.+++.-.-++....+..- ..+..-...++..+.+.|++++|+.+++.... .+...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 3456677766655554433210 11222233455667778888888888887754 244556666677777888888
Q ss_pred HHHHHHHhHHCCCCC-CHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 042098 204 AVELFGRMREEEFLP-DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282 (566)
Q Consensus 204 a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 282 (566)
|+..|+++... .| +...+..+...+...|+.+.|...++.+.+..+. +...+..+...+...|++++|...++.+.
T Consensus 95 A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 98888888773 34 3456667777888888888888888888876544 44566778888888888888888887662
Q ss_pred C--CC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccC
Q 042098 283 N--KD-VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG 359 (566)
Q Consensus 283 ~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 359 (566)
. |+ ...+..+ ..+...|++++|+..++.+.+....++......+..++...|+.++|...+........
T Consensus 172 ~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p------- 243 (656)
T PRK15174 172 QEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL------- 243 (656)
T ss_pred HhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------
Confidence 2 32 2333333 34778888888888888887654334444445555667777777777777766665432
Q ss_pred CHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHH----HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHH
Q 042098 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE----ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435 (566)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~ 435 (566)
.+...+..+...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...
T Consensus 244 --------------~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~g~~~eA~~~ 306 (656)
T PRK15174 244 --------------DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN---SDNVRIVTLYADALIRTGQNEKAIPL 306 (656)
T ss_pred --------------CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 256677788888888888875 788888888753 33456777888888888888888888
Q ss_pred HHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 436 FDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVL-GALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 436 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
+++.... .|+ ...+..+..+|.+.|++++|++.++++... |+...+ ..+..++...|+.++|...|+++++..|
T Consensus 307 l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 307 LQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 8888754 455 556677788888888888888888887643 554433 3345677888888888888888888888
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 513 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
++. ...+++|...+.+..+.
T Consensus 384 ~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 384 SHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred hhc------------hhhHHHHHHHHHHHHHh
Confidence 764 34555666666666654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-17 Score=168.01 Aligned_cols=377 Identities=10% Similarity=-0.028 Sum_probs=280.4
Q ss_pred HHHcCCCChhHHHHHHHHHHHC--CCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042098 92 GLTTAWQKYSHSLKLYYQMKRL--GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169 (566)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 169 (566)
.+.+. .+|+...-+|..-.+. .-.-+..-...++..+.+.|+++.|..+++........+ ......++......|+
T Consensus 14 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~ 91 (656)
T PRK15174 14 TLLKQ-EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQ 91 (656)
T ss_pred hhhhh-hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCC
Confidence 34456 6777766666655432 111234456667778889999999999999998876444 3344445566677999
Q ss_pred HHHHHHHHhccCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHhcCCCCchhHHHHHHH
Q 042098 170 LDSARKVFDEIRE--R-DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD-EITLVSVLGSCGDLGDLVLGKWVEGF 245 (566)
Q Consensus 170 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 245 (566)
+++|...++.+.+ | +...+..+...+.+.|++++|+..+++.... .|+ ...+..+...+...|+.++|...+..
T Consensus 92 ~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 92 PDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 9999999999875 3 5667888889999999999999999999873 444 56677888889999999999999998
Q ss_pred HHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 042098 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK----DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321 (566)
Q Consensus 246 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 321 (566)
+....+.+....+. + ..+...|++++|...++.+.+. +...+..+...+.+.|++++|+..+++..... +.+.
T Consensus 170 ~~~~~P~~~~a~~~-~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~ 246 (656)
T PRK15174 170 QAQEVPPRGDMIAT-C-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGA 246 (656)
T ss_pred HHHhCCCCHHHHHH-H-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 88777665443333 3 3478889999999999987543 23344555678889999999999999998764 2345
Q ss_pred hHHHHHHHHHhccCChhH----HHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHH
Q 042098 322 ITLIGVLSACASIGALDL----GKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397 (566)
Q Consensus 322 ~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 397 (566)
..+..+...+...|++++ |...++...+.. +.+...+..+...+...|++++|..
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~---------------------P~~~~a~~~lg~~l~~~g~~~eA~~ 305 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN---------------------SDNVRIVTLYADALIRTGQNEKAIP 305 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC---------------------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 566667777888888775 555555555432 2367889999999999999999999
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS-EHYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 398 ~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
.+++..+.. +-+......+...+...|++++|...++.+... .|+. ..+..+..++...|++++|++.|++..
T Consensus 306 ~l~~al~l~---P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 306 LLQQSLATH---PDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999998864 234556777788899999999999999988865 5654 334445678899999999999999876
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 477 EK-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 477 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
.. |+.. ..++++|...+.++.+.-+.
T Consensus 380 ~~~P~~~-----------~~~~~ea~~~~~~~~~~~~~ 406 (656)
T PRK15174 380 QARASHL-----------PQSFEEGLLALDGQISAVNL 406 (656)
T ss_pred HhChhhc-----------hhhHHHHHHHHHHHHHhcCC
Confidence 53 5442 34556788888888876543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-16 Score=159.09 Aligned_cols=439 Identities=10% Similarity=-0.018 Sum_probs=287.3
Q ss_pred ChHHHHHhh--cCCCchhHHHHhhcCCC--CCc--chHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCC-cccHHHH--
Q 042098 55 PNFLLIRII--DLKDFNYASLLFHQISR--PNE--YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPD-NFTYPFV-- 125 (566)
Q Consensus 55 ~~~~~~~l~--~~g~~~~A~~~~~~~~~--~~~--~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l-- 125 (566)
+...-.+++ +.|+++.|+..|++..+ |+. ..+ .++..+... |+.++|+..+++.. .|+ ...+..+
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~-G~~~~A~~~~eka~----~p~n~~~~~llal 108 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWA-GRDQEVIDVYERYQ----SSMNISSRGLASA 108 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHc-CCcHHHHHHHHHhc----cCCCCCHHHHHHH
Confidence 333334444 89999999999998853 443 234 778888888 99999999999987 232 2233333
Q ss_pred HHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHh--cCChhH
Q 042098 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK--MGYAKE 203 (566)
Q Consensus 126 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~ 203 (566)
...+...|++++|.++++.+.+... -++..+..++..+...++.++|+..++.+...+......+..++.. .++..+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHH
Confidence 4567788999999999999988753 3466777888889999999999999999887444332234444444 555656
Q ss_pred HHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchH-----HHHHHHHHHH---H--hcCC---
Q 042098 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF-----YMGSALIDMY---G--KCGA--- 270 (566)
Q Consensus 204 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~---~--~~g~--- 270 (566)
|++.++++.+.. +-+...+..++.++.+.|-...|.++...-.+.--+.+. .....+++.- . ...+
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 999999998852 224566677778888888888887766543221111110 0011112110 0 1112
Q ss_pred HHHHHHHHhcCCC-----CChh-----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHH
Q 042098 271 LVPARRVFDAMVN-----KDVV-----TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340 (566)
Q Consensus 271 ~~~A~~~~~~~~~-----~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 340 (566)
.+.|+.-++.+.. |... ..--.+.++...|++.++++.|+.|...|.+....+-..+..+|...+.+++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 2334444444322 2111 12234556777888888888888888887777878888888888888888888
Q ss_pred HHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-----------CC
Q 042098 341 KWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG-----------AA 409 (566)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-----------~~ 409 (566)
..++..+........ -..++......|.-+|...+++++|..+++++.+.-+ ..
T Consensus 347 ~~l~~~~~~~~~~~~---------------~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 347 APILSSLYYSDGKTF---------------RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhhcccccc---------------CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 887777755322100 0013444457788888888888888888888876431 01
Q ss_pred CCCHH-HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHH
Q 042098 410 RPNDV-TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGA 486 (566)
Q Consensus 410 ~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~ 486 (566)
.||-. .+..++..+...|+..+|++.++.+... -+-|......+.+.+...|.+.+|++.++..... | +..+...
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 11222 2334455677788888888888888653 2335777778888888888888888888765442 3 3455556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (566)
.+.++...|++++|..+.+.+.+..|+++.+-
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 66777778888888888888888888877443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-16 Score=160.23 Aligned_cols=423 Identities=10% Similarity=-0.030 Sum_probs=290.4
Q ss_pred HHHhhcCCCchhHHHHhhcCC--CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChh
Q 042098 59 LIRIIDLKDFNYASLLFHQIS--RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136 (566)
Q Consensus 59 ~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 136 (566)
.+.+.+.|+++.|+..|++.. .|+...|..+..+|.+. |++++|++.++...+.. +.+...+..+..++...|+++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l-~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNAL-GDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 455558999999999999873 47778888888999999 99999999999998864 225567888899999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCC
Q 042098 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216 (566)
Q Consensus 137 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 216 (566)
+|..-+......+...+.. ...++..+........+...++.-.. +...+..+. .|...........-++.-.+ .
T Consensus 212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~ 286 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPE-NLPSVTFVG-NYLQSFRPKPRPAGLEDSNE--L 286 (615)
T ss_pred HHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHH-HHHHHccCCcchhhhhcccc--c
Confidence 9999887765543222222 12222222221222334444433222 222222222 22222222222222221111 1
Q ss_pred CCCH-HHHHHHHH---HhcCCCCchhHHHHHHHHHHhC-CCc-hHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Chh
Q 042098 217 LPDE-ITLVSVLG---SCGDLGDLVLGKWVEGFVVKNK-MDL-NFYMGSALIDMYGKCGALVPARRVFDAMVN--K-DVV 287 (566)
Q Consensus 217 ~p~~-~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~ 287 (566)
.|.. ..+..+.. -....+++++|...++...+.+ ..| ....+..+..++...|++++|...|++..+ | +..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 366 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ 366 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 1111 11111111 1133467888999999888765 223 445677888888999999999999998854 3 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+...
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P--------------- 430 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP--------------- 430 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc---------------
Confidence 77888888999999999999999988753 23456777777788888888888877777665432
Q ss_pred HccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC
Q 042098 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 447 (566)
.+...+..+..++.+.|++++|+..|++..+.. +-+...+..+...+...|++++|+..|+..... .|
T Consensus 431 ------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p 498 (615)
T TIGR00990 431 ------DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF---PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EK 498 (615)
T ss_pred ------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CC
Confidence 356778888999999999999999999998753 345678888899999999999999999998754 34
Q ss_pred Ch-h-------HHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 448 KS-E-------HYSCMVDLYARAGHLSEAWDFVERMPE-KV-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 448 ~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
+. . .++.....+...|++++|.+++++... .| +...+..+...+...|++++|.+.|+++.++.+....
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 31 1 112222334456999999999998654 24 4456888999999999999999999999998765443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-16 Score=165.98 Aligned_cols=394 Identities=10% Similarity=0.016 Sum_probs=223.9
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~ 177 (566)
|+.++|++++.+..... +.+...+..+..++.+.|++++|.++++..++.. +.+...+..+...+...|++++|...+
T Consensus 29 g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 29 GQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44444444444444311 1222234444444444444444444444444431 122333334444444445555554444
Q ss_pred hccCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCc
Q 042098 178 DEIRE--R-DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD-EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253 (566)
Q Consensus 178 ~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 253 (566)
++..+ | +.. +..+...+...|++++|+..++++.+. .|+ ...+..+..++...+..+.|...++.... .|
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p 180 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TP 180 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CH
Confidence 44432 1 222 444444444445555555555444442 222 22222333333344444444444433221 11
Q ss_pred hH------HHHHHHHHHH-----HhcCCH---HHHHHHHhcCCC-----CChh-HH----HHHHHHHHHcCCHHHHHHHH
Q 042098 254 NF------YMGSALIDMY-----GKCGAL---VPARRVFDAMVN-----KDVV-TW----NAMITAYAQNGLSNEAIMLF 309 (566)
Q Consensus 254 ~~------~~~~~li~~~-----~~~g~~---~~A~~~~~~~~~-----~~~~-~~----~~li~~~~~~~~~~~a~~~~ 309 (566)
+. .....++... ...+++ ++|++.++.+.+ |+.. .+ ...+..+...|++++|+..|
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 00 0011112111 112223 556666666542 2111 11 11134456778889999999
Q ss_pred HHHHHCCCC-CCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHH
Q 042098 310 NRMKYAGVN-PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAF 388 (566)
Q Consensus 310 ~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 388 (566)
+.+.+.+.. |+. ....+..++...|++++|...++.+.+...... ......+..+..++..
T Consensus 261 ~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~-----------------~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 261 QRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIA-----------------DLSDEELADLFYSLLE 322 (765)
T ss_pred HHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC-----------------CCChHHHHHHHHHHHh
Confidence 988876532 332 222245577788888888877777665321100 0013345666778889
Q ss_pred cCChHHHHHHHHHHHhCCC---------CCCCCH---HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 042098 389 NGRAHEALLLFERMSKEGG---------AARPND---VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCM 455 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g~---------~~~p~~---~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 455 (566)
.|++++|..+++++....+ .-.|+. ..+..+...+...|+.++|+++++++... .|+ ...+..+
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~l 399 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDY 399 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 9999999999999987531 012332 24456677888999999999999999865 444 7788999
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
...+...|++++|++.+++.... |+ ...+...+..+...|++++|+.+++++++..|+++.+...
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999998763 55 5566667778899999999999999999999999855443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-15 Score=152.41 Aligned_cols=428 Identities=10% Similarity=-0.004 Sum_probs=318.7
Q ss_pred hHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCc--ccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042098 85 AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN--FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162 (566)
Q Consensus 85 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 162 (566)
.|...| ...+. |+++.|++.|++..+. .|+. ..+ .++..+...|+.++|...++..... -.........+..
T Consensus 37 ~y~~ai-i~~r~-Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ 110 (822)
T PRK14574 37 QYDSLI-IRARA-GDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAAR 110 (822)
T ss_pred HHHHHH-HHHhC-CCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHH
Confidence 455555 45577 9999999999999886 3443 244 7888888889999999999998721 1122233333466
Q ss_pred HHHhcCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhH
Q 042098 163 MYARCGKLDSARKVFDEIRE--R-DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239 (566)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 239 (566)
.+...|++++|+.+|+++.+ | +...+..++..+...++.++|++.++++.. ..|+...+..++..+...++..+|
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE--RDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcchHHHHHHHHHHHhcchHHHH
Confidence 88889999999999999986 3 566777888899999999999999999976 456666665554555456666669
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHH--------HHHHHH-----HHHcCCH---
Q 042098 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTW--------NAMITA-----YAQNGLS--- 302 (566)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~--------~~li~~-----~~~~~~~--- 302 (566)
...++++.+..+. +...+..++..+.+.|-...|.++..+-+.- +...+ ..+++. -...+++
T Consensus 189 L~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999999998754 5566678889999999999999998876531 11111 111110 0012233
Q ss_pred HHHHHHHHHHHHC-CCCCCHh-----HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCCh
Q 042098 303 NEAIMLFNRMKYA-GVNPDKI-----TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNE 376 (566)
Q Consensus 303 ~~a~~~~~~m~~~-g~~p~~~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 376 (566)
+.|+.-++.+... +-.|... ...-.+.++...|+..++...++.+...+.... .
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P--------------------~ 327 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP--------------------D 327 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC--------------------H
Confidence 4455555555442 2224322 223456678899999999999999998875432 4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCC-----CCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcC-------
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEG-----GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG------- 444 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-----~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------- 444 (566)
.+-..+.++|...+++++|+.+|+++.... .+..... ...|.-++...+++++|..+++.+.+...
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~--~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~ 405 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLD--ADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG 405 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHH--HHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence 578899999999999999999999986632 1133332 24778889999999999999999987311
Q ss_pred ---CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 445 ---LIPK---SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 445 ---~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
-.|+ ...+..++..+...|+..+|++.++++... .+......+...+...|+..+|++.++.+..++|++..
T Consensus 406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~ 485 (822)
T PRK14574 406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI 485 (822)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH
Confidence 1233 345666788899999999999999999764 57778888889999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 517 NYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
+....+.++...|+|++|.++.+.+.+
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 999999999999999999988866643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-15 Score=149.01 Aligned_cols=505 Identities=11% Similarity=0.032 Sum_probs=318.2
Q ss_pred CCchHHHHHHHHH--HhCCCCChHHHHHhh--cCCCchhHHHHhhcCCCCCcchHHHHHHH--HHcC---CCChhHHHHH
Q 042098 36 STKTVQQIHTQML--INFIQKPNFLLIRII--DLKDFNYASLLFHQISRPNEYAFNVMIRG--LTTA---WQKYSHSLKL 106 (566)
Q Consensus 36 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~--~~g~~~~A~~~~~~~~~~~~~~~~~ll~~--~~~~---~~~~~~a~~~ 106 (566)
+....-.++.... .....||+.+.-.++ ++|+.+.|+..|....+-|+..-++++.. +..+ ...+..++.+
T Consensus 179 dY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~l 258 (1018)
T KOG2002|consen 179 DYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQL 258 (1018)
T ss_pred cHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 3333344444432 223345555444444 88888888888877765554444443321 1111 1234555555
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhccCCC-
Q 042098 107 YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED--DHVSHSLITMYARCGKLDSARKVFDEIRER- 183 (566)
Q Consensus 107 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~- 183 (566)
+...-... .-|+...+.|..-+.-.|++..+..+...++.....-. ...|--+.++|-..|++++|...|.+..+.
T Consensus 259 l~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 259 LQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred HHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 55554432 23666677777777777888888888777776542111 223445677777788888888877766642
Q ss_pred -C--hhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCC----CchhHHHHHHHHHHhCCCchHH
Q 042098 184 -D--LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG----DLVLGKWVEGFVVKNKMDLNFY 256 (566)
Q Consensus 184 -~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~ 256 (566)
+ +..+--+...+.+.|+.+.+...|+..... .+-+..|...+...|+..+ ..+.|..++....+.- +.|..
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~ 415 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSE 415 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHH
Confidence 2 334455667777788888888888777663 2223456666666665553 3455555555555544 23455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcC--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH----
Q 042098 257 MGSALIDMYGKCGALVPARRVFDAM--------VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA---GVNPDK---- 321 (566)
Q Consensus 257 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~---- 321 (566)
.|-.+...+.... ...++.+|... ....+...|.+.......|++.+|...|...... ...++.
T Consensus 416 a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 416 AWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 5555555554433 22223333332 2245566777777777778888877777776544 122222
Q ss_pred -h-HHHHHHHHHhccCChhHHHHHHHHHHHhCCC-Cccc---------cCCHHHHHHHHccCC---CCChhHHHHHHHHH
Q 042098 322 -I-TLIGVLSACASIGALDLGKWVDKYASQRGLR-HDIF---------CGSIDDALKVFEDMP---VTNEVSWNAMISAL 386 (566)
Q Consensus 322 -~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~---------~~~~~~A~~~~~~~~---~~~~~~~~~li~~~ 386 (566)
. +--.+....-..++.+.|...++.+.+.... .|.. .++..+|..++.... ..++..++-+...+
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 1 2222333445556777777777777653321 2211 366677777777665 45666777777788
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh------------hCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 042098 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH------------AGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454 (566)
Q Consensus 387 ~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~------------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 454 (566)
.+...+..|.+-|....+.-. ..+|+.+...|.+.|.+ .+..++|+++|....+. -+-|...-+.
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~-~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANG 651 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTS-TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANG 651 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhc-cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccc
Confidence 888888888887777665431 34676666666665443 24467788888877753 2335677788
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchhHHHHHHHHHhCCC
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE--SSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 530 (566)
+.-.++..|++.+|..+|.++.+. ....+|..+..+|...|++..|+++|+...+.. .+++.+...|++++.+.|+
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 888899999999999999988764 356788889999999999999999999988763 4577888899999999999
Q ss_pred hHHHHHHHHHHHhCCCc
Q 042098 531 WDDSAKMRALMREKGVS 547 (566)
Q Consensus 531 ~~~A~~~~~~~~~~g~~ 547 (566)
+.+|.+.+.......+.
T Consensus 732 ~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 99999988777665443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-14 Score=129.37 Aligned_cols=308 Identities=12% Similarity=0.117 Sum_probs=177.2
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhCCCCChHHHHHhh------cCCCchh-HHHHhhcCC---CCCcchHHHHHHHHH
Q 042098 25 EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNY-ASLLFHQIS---RPNEYAFNVMIRGLT 94 (566)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~g~~~~-A~~~~~~~~---~~~~~~~~~ll~~~~ 94 (566)
..++.+++. +..++.--+++.|.+.|.+-...+--.|+ ...++-. -++.|-.|. +.+..+|
T Consensus 120 ~nL~kmIS~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW-------- 190 (625)
T KOG4422|consen 120 NNLLKMISS-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW-------- 190 (625)
T ss_pred hHHHHHHhh-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------
Confidence 344444444 66777778899999988876666555544 2222221 123333332 1222222
Q ss_pred cCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 042098 95 TAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174 (566)
Q Consensus 95 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~ 174 (566)
+. |.. |.-+++.. +-+..||.++|.++|+--..+.|.+++++-.+...+.+..++|.+|.+-.-..+ .
T Consensus 191 K~-G~v--AdL~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 KS-GAV--ADLLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred cc-ccH--HHHHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 11 222 22122221 224455555555555555555555555555555455555555555544332222 2
Q ss_pred HHHhccC----CCChhHHHHHHHHHHhcCChhH----HHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchh-HHHHHHH
Q 042098 175 KVFDEIR----ERDLVSWNSMISGYSKMGYAKE----AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL-GKWVEGF 245 (566)
Q Consensus 175 ~~~~~~~----~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~ 245 (566)
+++.+|. .||..|+|+++.+..+.|+++. |++++.+|++-|+.|...+|..+|..+++.++..+ +..++..
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 3333332 3555566666666555555443 34566667777777777777776666666555533 3333333
Q ss_pred HHHh----CC---C-chHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--------CC---hhHHHHHHHHHHHcCCHHHHH
Q 042098 246 VVKN----KM---D-LNFYMGSALIDMYGKCGALVPARRVFDAMVN--------KD---VVTWNAMITAYAQNGLSNEAI 306 (566)
Q Consensus 246 ~~~~----~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~ 306 (566)
+... .+ . .+...+..-+..|.+..+.+-|..+-.-... ++ ..-|..+....|+....+..+
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 11 1 1333455556666666666666655444321 11 224566777888888999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCC
Q 042098 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353 (566)
Q Consensus 307 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 353 (566)
..|+.|.-.-+-|+..+...++.+....|.++-..+++..+...|..
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 99999998888899999999999999999999998898888877654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-14 Score=130.53 Aligned_cols=432 Identities=16% Similarity=0.157 Sum_probs=305.3
Q ss_pred cchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH--ccCChhH-HHHHHHHHHHhCCCCchhHHHH
Q 042098 83 EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA--NLLALNH-GVSVHSSVFKIGLDEDDHVSHS 159 (566)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~ 159 (566)
+.+=|.|+...+ + |...++.-+|+.|.+.|+..+...--.|+...+ +..++.- -.+-|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~kmIS-~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKMIS-S-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hcchhHHHHHHh-h-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 445667766554 4 789999999999999998887777666665443 3333332 223344444444 2333343
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhH
Q 042098 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239 (566)
Q Consensus 160 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 239 (566)
+.|++.+ ++-+...++..+|.++|.++|+--..++|.+++++-.....+.+..+||.+|.+.+-. ..
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VG 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----cc
Confidence 3455444 5555555677899999999999999999999999999888999999999999876543 33
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHH----HhcC----CCCChhHHHHHHHHHHHcCCHHH-HHHHHH
Q 042098 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV----FDAM----VNKDVVTWNAMITAYAQNGLSNE-AIMLFN 310 (566)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~----~~~~~~~~~~li~~~~~~~~~~~-a~~~~~ 310 (566)
+.+..+|....+.||..|+|+++.+..+.|+++.|.+. +.+| .+|...+|..+|..+++.++..+ +..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 88999999999999999999999999999998876554 4444 56889999999999999888754 445555
Q ss_pred HHHH----CCCCC----CHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHH
Q 042098 311 RMKY----AGVNP----DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAM 382 (566)
Q Consensus 311 ~m~~----~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 382 (566)
++.. +.++| |..-|...+..|.+..+.+.|..+........-. +.. |.. .....-|..+
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~-~~i-g~~-----------~~~~fYyr~~ 404 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW-KFI-GPD-----------QHRNFYYRKF 404 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hhc-ChH-----------HHHHHHHHHH
Confidence 5533 33443 3445677888999999999999888766542211 000 000 0123457778
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 042098 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462 (566)
Q Consensus 383 i~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 462 (566)
....|+....+.-+.+|+.|.-.- .-|+..+...++++....|.++-.-++|..++.- |..-+...-.-+...+++.
T Consensus 405 ~~licq~es~~~~~~~Y~~lVP~~--y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 405 FDLICQMESIDVTLKWYEDLVPSA--YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhccce--ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcC
Confidence 888899999999999999998776 6799999999999998899998888888888765 6444444444455555554
Q ss_pred C-CH--------H-----HHHHHHHh-------CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCch-
Q 042098 463 G-HL--------S-----EAWDFVER-------MPE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE---SSNSG- 516 (566)
Q Consensus 463 g-~~--------~-----~A~~~~~~-------~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~- 516 (566)
+ .. . -|..+++. +.. .-.....+.++-.+.+.|..++|.+++..+.+.+ |..+.
T Consensus 482 k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~l 561 (625)
T KOG4422|consen 482 KLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLL 561 (625)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcch
Confidence 4 11 0 11122221 111 1455667777778889999999999999987643 44433
Q ss_pred -hHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 517 -NYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 517 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
+...+.+.-.+.++...|...++.|...+...
T Consensus 562 nAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 562 NAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 34566777788889999999999887665543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-13 Score=137.69 Aligned_cols=475 Identities=12% Similarity=0.051 Sum_probs=323.2
Q ss_pred HHHHhh--cCCCchhHHHHhhcCC------CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 042098 58 LLIRII--DLKDFNYASLLFHQIS------RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129 (566)
Q Consensus 58 ~~~~l~--~~g~~~~A~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 129 (566)
+..+-+ ..|++-.|+.+|.... .||+.+ .+-..+.+. |+.+.|+..|....+.+. .++.++..|-..-
T Consensus 168 lGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl-~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 168 LGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKL-GMSEKALLAFERALQLDP-TCVSALVALGEVD 243 (1018)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhc-cchhhHHHHHHHHHhcCh-hhHHHHHHHHHHH
Confidence 444444 7899999999998842 234322 223455677 899999999999988642 2333333332222
Q ss_pred Hcc---CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC------hhHHHHHHHHHHhcCC
Q 042098 130 ANL---LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD------LVSWNSMISGYSKMGY 200 (566)
Q Consensus 130 ~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~ 200 (566)
... ..+..+..++....... .-++.+.+.|.+.|.-.|++..++.+.+.+...+ ..+|--+.++|-..|+
T Consensus 244 l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd 322 (1018)
T KOG2002|consen 244 LNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD 322 (1018)
T ss_pred HHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence 222 34555666666655543 5678889999999999999999999988877532 3457788999999999
Q ss_pred hhHHHHHHHHhHHCCCCCCHHH--HHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC----CHHHH
Q 042098 201 AKEAVELFGRMREEEFLPDEIT--LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG----ALVPA 274 (566)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A 274 (566)
+++|...|.+... ..|+..+ +.-+...+.+.|+++.+...|+.+.+..+. +..+...|...|...+ ..+.|
T Consensus 323 ~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 323 FEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred HHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 9999999977655 4555544 345778899999999999999999887654 4455566777777765 56778
Q ss_pred HHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHH
Q 042098 275 RRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRM----KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347 (566)
Q Consensus 275 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 347 (566)
..++....++ |...|-.+...+- .++...++..|... ...+-.+.....+.+-......|+++.|...+...
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 8888777554 4556665555544 44555557666654 44555677888899998899999999999988887
Q ss_pred HHh---CCCCccc-----------------cCCHHHHHHHHccCC--CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042098 348 SQR---GLRHDIF-----------------CGSIDDALKVFEDMP--VTN-EVSWNAMISALAFNGRAHEALLLFERMSK 404 (566)
Q Consensus 348 ~~~---~~~~~~~-----------------~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 404 (566)
... ...++.. .++.+.|.+.|..+. .|+ +..|-.+.......+...+|..++.+...
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 765 1222220 456677777777766 232 22333333233334667788888888776
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH------------hcCCHHHHHHHH
Q 042098 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA------------RAGHLSEAWDFV 472 (566)
Q Consensus 405 ~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~------------~~g~~~~A~~~~ 472 (566)
.+ .-++..+..+...+.+...+..|..-|+...+.....+|..+.-+|.+.|. ..+..++|+++|
T Consensus 559 ~d---~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y 635 (1018)
T KOG2002|consen 559 ID---SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLY 635 (1018)
T ss_pred cc---cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 53 233333444445666777777777766666555333455555555555443 223467888888
Q ss_pred HhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 473 ERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 473 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
.++... -+...-|-+.-.++..|++..|..+|.+..+.-.+.+.+|..++.+|...|+|-.|.++|+...+.
T Consensus 636 ~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 636 GKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877643 344555666777788888888888888888877777888888888999999999998888877654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-12 Score=121.65 Aligned_cols=497 Identities=11% Similarity=0.062 Sum_probs=377.3
Q ss_pred HHHHHHHHHhCCCCChHHHHHhhcCCCchhHHHHhhcCCC---CCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCC
Q 042098 41 QQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR---PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP 117 (566)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p 117 (566)
+++.....++ ++.++.+|.+.+...+.++|+.++....+ .+...| -++++- .-++.|..++++..+. ++.
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLw----lAlarL-etYenAkkvLNkaRe~-ipt 438 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLW----LALARL-ETYENAKKVLNKAREI-IPT 438 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHH----HHHHHH-HHHHHHHHHHHHHHhh-CCC
Confidence 3444444433 46777889999988888889999887643 233333 456666 6788899999998875 677
Q ss_pred CcccHHHHHHHHHccCChhHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC------CChhH
Q 042098 118 DNFTYPFVFISCANLLALNHGVSVHSSV----FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE------RDLVS 187 (566)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~ 187 (566)
+...|.+....=-..|+.+...+++..- ...|+..+...|-.=...|-+.|..-.+..+...... .--.|
T Consensus 439 d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~t 518 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKST 518 (913)
T ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhH
Confidence 8888877766667788888888876654 4568888888888777788888887777777766543 22357
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Q 042098 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267 (566)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 267 (566)
|+.-...|.+.+.++-|..+|....+- ++-+...|......--..|..+....++......-+. ....|-.....+..
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWK 596 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHh
Confidence 888888999999999999999888763 3445566777766667778889999999988887664 44456666777888
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHH
Q 042098 268 CGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344 (566)
Q Consensus 268 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 344 (566)
.|++..|..++.+..+ .+...|-+-+.....+.+++.|..+|.+.... .|+...|.--+..--..+..++|.+++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 8999999999888744 25567888888889999999999999988774 567777766666666778899999998
Q ss_pred HHHHHhCCCCccc----------cCCHHHHHHHHccCC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC
Q 042098 345 KYASQRGLRHDIF----------CGSIDDALKVFEDMP--VT-NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411 (566)
Q Consensus 345 ~~~~~~~~~~~~~----------~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p 411 (566)
+...+.-...... .++++.|...|..-. .| .+..|-.|...--+.|++-.|..++++..-.+ +-
T Consensus 675 Ee~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN---Pk 751 (913)
T KOG0495|consen 675 EEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN---PK 751 (913)
T ss_pred HHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC---CC
Confidence 8887754332222 567777887777665 33 45567777777778888889999998887765 45
Q ss_pred CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042098 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491 (566)
Q Consensus 412 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 491 (566)
+...|...|+.-.+.|..+.|..++.+..+. ++.+...|..-|....+.++-.+....+.+.. .|+...-.+...+
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lf 827 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLF 827 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHH
Confidence 6677888888888899999998888887764 33345677777777777777777777777765 4556666777888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEe
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~ 557 (566)
....+++.|.+.|.++.+.+|++..+|..+...+.+.|.-++-.+++....... |.-|..|..+
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 888999999999999999999999999999999999999999999998887643 3456666554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-14 Score=127.63 Aligned_cols=440 Identities=10% Similarity=0.047 Sum_probs=257.4
Q ss_pred HHHHHHHhCCCCChH-----HHHHhhcCCCchhHHHHhhcC----CCCC----cchHHHHHHHHHcCCCChhHHHHHHHH
Q 042098 43 IHTQMLINFIQKPNF-----LLIRIIDLKDFNYASLLFHQI----SRPN----EYAFNVMIRGLTTAWQKYSHSLKLYYQ 109 (566)
Q Consensus 43 ~~~~~~~~~~~~~~~-----~~~~l~~~g~~~~A~~~~~~~----~~~~----~~~~~~ll~~~~~~~~~~~~a~~~~~~ 109 (566)
-++.+.+...-|+.- +.|..++..++..|+++++.. +..+ +...|.+--.+.+. |+++.|+.-|+.
T Consensus 223 tyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~-gqy~dainsfdh 301 (840)
T KOG2003|consen 223 TYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA-GQYDDAINSFDH 301 (840)
T ss_pred hhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec-ccchhhHhhHHH
Confidence 344455554444433 334444778888888887654 2211 22344444466777 888888888888
Q ss_pred HHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHH--------HHHHHHHHhc---------C--CH
Q 042098 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVS--------HSLITMYARC---------G--KL 170 (566)
Q Consensus 110 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--------~~li~~~~~~---------~--~~ 170 (566)
+.+. .|+-.+--.|+-++..-|+.++..+.|..|+.....+|..-| ..|++--.+. + +.
T Consensus 302 ~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~a 379 (840)
T KOG2003|consen 302 CMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADA 379 (840)
T ss_pred HHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhH
Confidence 8775 466555444444445568888888888888765433332211 1111111111 1 01
Q ss_pred HHHHHHHhcc----CCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHhcCCCCchhHHHHHHH
Q 042098 171 DSARKVFDEI----RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI-TLVSVLGSCGDLGDLVLGKWVEGF 245 (566)
Q Consensus 171 ~~A~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~ 245 (566)
++++-.--.+ ..|+-.. ..+-.++.+.. ....|-.. .-..-..-+.+.|+++.|.+++..
T Consensus 380 ek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~---s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 380 EKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKA---SQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred HHHHHHHHHHhccccccchhc------------ccHHHHHHHHH---hhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 1111111111 1111000 00001111110 00000000 000011223456666666666666
Q ss_pred HHHhCCCchHHHHHHHHHHHHh--cCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 042098 246 VVKNKMDLNFYMGSALIDMYGK--CGALVPARRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320 (566)
Q Consensus 246 ~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 320 (566)
..+..-..-...-+.|...+.- -.++..|...-+..... |......-...-...|++++|.+.|++....+-...
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ 524 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT 524 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH
Confidence 5555443333333333333332 23455555554444322 111111111222346777888888877766433222
Q ss_pred HhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHH
Q 042098 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALL 397 (566)
Q Consensus 321 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~ 397 (566)
...|++-+. +-.. |++++|+..|-.+. ..+..+...+...|-...+..+|++
T Consensus 525 ealfniglt-~e~~------------------------~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 525 EALFNIGLT-AEAL------------------------GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred HHHHHhccc-HHHh------------------------cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 222222221 1222 55555555554432 4567777788888999999999999
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 042098 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 398 ~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
++.+.... ++.|+..+.-|...|-+.|+-..|.+.+-.--+ -++-+..+...|..-|....-+++|+.+|++..-
T Consensus 580 ~~~q~~sl---ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 580 LLMQANSL---IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHhccc---CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99887664 677888899999999999999999998765543 3445688888899999999999999999998643
Q ss_pred -CCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCC
Q 042098 478 -KVDEIVLGALLG-ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 478 -~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (566)
+|+..-|..++. ++.+.|++++|..+++...+..|.+......|++++...|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 699999999885 55578999999999999999999999999999999888774
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-11 Score=114.99 Aligned_cols=484 Identities=11% Similarity=0.067 Sum_probs=372.0
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhCCCCChHHHHHhhcCCCchhHHHHhhcCCC---CCcchHHHHHHHHHcCCCChh
Q 042098 25 EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR---PNEYAFNVMIRGLTTAWQKYS 101 (566)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~ 101 (566)
..+-...-......+++-+.+...+. .+-...++.+|.+...|+.|..++++.++ .+...|-+....--.+ |+.+
T Consensus 380 v~LWKaAVelE~~~darilL~rAvec-cp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~n-gn~~ 457 (913)
T KOG0495|consen 380 VRLWKAAVELEEPEDARILLERAVEC-CPQSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEAN-GNVD 457 (913)
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhc-CCHH
Confidence 33333444445556655555555544 35566788888899999999999988753 5667776665555566 8888
Q ss_pred HHHHHHHHH----HHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHH
Q 042098 102 HSLKLYYQM----KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDE--DDHVSHSLITMYARCGKLDSARK 175 (566)
Q Consensus 102 ~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~~~~~~A~~ 175 (566)
....++++- ...|+..+..-|-.=...|-..|..-.+..+....+..|++- -..+|+.-...|.+.+.++-|..
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 888887664 457899999999888889999999999999999999888753 34688888899999999999999
Q ss_pred HHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCC
Q 042098 176 VFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252 (566)
Q Consensus 176 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (566)
+|....+ .+...|...+..--..|..++...+|++.... ++-....|.......-..|++..|..++..+.+..+.
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 9988776 35566777776666778899999999998875 3334455555556667779999999999999888776
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHH
Q 042098 253 LNFYMGSALIDMYGKCGALVPARRVFDAMV--NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK-ITLIGVLS 329 (566)
Q Consensus 253 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~ 329 (566)
+..++-+-+........++.|..+|.+.. .++...|.--+...--.+..++|++++++..+. -|+- ..|..+-.
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQ 693 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhH
Confidence 77788888889999999999999999874 356666766666666678899999999988775 4543 45555666
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCccc----------cCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHH
Q 042098 330 ACASIGALDLGKWVDKYASQRGLRHDIF----------CGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEAL 396 (566)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~ 396 (566)
.+-+.++.+.|...+..-.+.-...-+. .|++-.|..+|+... +.+...|-..|+.-.+.|..+.|.
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence 7777788887776654433321111111 578999999999776 667889999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 397 ~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
.++.+..+. ++.+...|.--|...-+.++-......+++ ..-|+.+.-++...+-...++++|.+.|.+..
T Consensus 774 ~lmakALQe---cp~sg~LWaEaI~le~~~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 774 LLMAKALQE---CPSSGLLWAEAIWLEPRPQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHh---CCccchhHHHHHHhccCcccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998876 566677788778777777775555555543 34577888889999999999999999999987
Q ss_pred CC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 477 EK-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 477 ~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
.. | ...+|.-+...+..+|.-+.-.+++.+....+|.....|.....
T Consensus 845 k~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 845 KKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred ccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 64 3 45778888899999999999999999999999998887777653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-11 Score=110.06 Aligned_cols=445 Identities=12% Similarity=0.102 Sum_probs=296.4
Q ss_pred cCCCchhHHHHhhcCC---CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHH
Q 042098 64 DLKDFNYASLLFHQIS---RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 140 (566)
..+++..|+.+|+... ..+...|-.-+..-.++ +.+..|..+++.....=...|..=|. -+..=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emkn-k~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKN-KQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhh-hhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHH
Confidence 5677778888888763 35666676677777777 88888888888887653232332222 2222234588888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHC-CC-
Q 042098 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR--ERDLVSWNSMISGYSKMGYAKEAVELFGRMREE-EF- 216 (566)
Q Consensus 141 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~- 216 (566)
+|+.-.+ .+|+...|++.|+.-.+.+.++.|..+++... .|++.+|--..+---++|+...|..+|+...+. |-
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 8887765 47888888888888888888888888888765 488888888888778888888888888876542 10
Q ss_pred CCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhcCCHHHHHHH--------HhcCCCC---
Q 042098 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-NFYMGSALIDMYGKCGALVPARRV--------FDAMVNK--- 284 (566)
Q Consensus 217 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~--- 284 (566)
..+...|.+....-.+...++.|..+|...++.-+.. ....|..+...--+-|+-....+. ++.+...
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 1112233333333345566777888888777765543 234555555555566665444433 2222222
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-------HHHHHHHHH---hccCChhHHHHHHHHHHHhCCCC
Q 042098 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI-------TLIGVLSAC---ASIGALDLGKWVDKYASQRGLRH 354 (566)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~ 354 (566)
|-.+|--.+..--..|+.+...++|+..... ++|-.. .|..+-.+| ....+++.+.+++..+.+
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~----- 394 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD----- 394 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----
Confidence 3446666677777778888888888888765 444221 122221122 123344444444443333
Q ss_pred ccccCCHHHHHHHHccCCCCChhHHH----HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHH
Q 042098 355 DIFCGSIDDALKVFEDMPVTNEVSWN----AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430 (566)
Q Consensus 355 ~~~~~~~~~A~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~ 430 (566)
+.+....||. .......++.+...|.+++...+. .-|-..+|...|..-.+.+.++
T Consensus 395 ----------------lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG----~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 395 ----------------LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG----KCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred ----------------hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc----cCCchhHHHHHHHHHHHHhhHH
Confidence 1123334443 334445577889999999988775 5588999999999988999999
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 431 EGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEKVD----EIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 431 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
.+..+++.... ..|. ..+|......=...|+.+.|..+|+-..++|. ...|.+.|.--...|.++.|..+++
T Consensus 455 RcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 455 RCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 99999999885 3554 56777777777889999999999998887753 4557777777778899999999999
Q ss_pred HHHhhCCCCchhHHHHHHHHH-----hCC-----------ChHHHHHHHHHHH
Q 042098 506 LLLEIESSNSGNYVISSKIFA-----NLK-----------MWDDSAKMRALMR 542 (566)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~ 542 (566)
++++..+... +|...+..-. ..| +...|.++|+++.
T Consensus 532 rlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 532 RLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 9998766544 6666655444 334 5667888887764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-12 Score=116.35 Aligned_cols=398 Identities=14% Similarity=0.079 Sum_probs=256.7
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHh
Q 042098 89 MIRGLTTAWQKYSHSLKLYYQMKRLGLKPD-NFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED-DHVSHSLITMYAR 166 (566)
Q Consensus 89 ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~ 166 (566)
...-+-++ |++++|++.|.+..+. .|| +..|.....+|...|+++++.+--...++. .|+ ...+..-..++-.
T Consensus 121 ~GN~~f~~-kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 121 KGNKFFRN-KKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhc-ccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 34456677 9999999999999885 677 777888888889999999998887777664 444 3356666677777
Q ss_pred cCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHH---------hHHC--CCCCCHHHHHHHHHHhcCCC-
Q 042098 167 CGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGR---------MREE--EFLPDEITLVSVLGSCGDLG- 234 (566)
Q Consensus 167 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~---------m~~~--~~~p~~~t~~~ll~~~~~~~- 234 (566)
.|++++|+.=+ |-.++..++....-.--+.+++.+ |.+. .+.|+.....+.+..+...-
T Consensus 196 lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 196 LGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 88888775321 222333333222222222222222 2211 23455444444444332110
Q ss_pred -----CchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-CCHHHHHHHHhcC-------CCC---Chh------HHHHH
Q 042098 235 -----DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC-GALVPARRVFDAM-------VNK---DVV------TWNAM 292 (566)
Q Consensus 235 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-------~~~---~~~------~~~~l 292 (566)
..+++...+.. .+=..+... ..+.+|...+.+- ... |.. +....
T Consensus 267 ~~~~~~~~ksDa~l~~--------------~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAE--------------ALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred ccccCCCccchhhHHH--------------HHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence 01111111111 010111110 0122222222221 111 111 11111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCC
Q 042098 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP 372 (566)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 372 (566)
..-+.-.|+...|..-|+........++.. |.-+-.+|....+.++....|....+....
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~------------------- 392 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE------------------- 392 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-------------------
Confidence 222344688889999999998865444332 666666788888888777777776665443
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHH
Q 042098 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 452 (566)
|..+|.--.+.+.-.+++++|..=|++.+... +-+...|..+--+..+.+.+++++..|++.+++ ++.-+.+|
T Consensus 393 --n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~---pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy 465 (606)
T KOG0547|consen 393 --NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD---PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVY 465 (606)
T ss_pred --CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHH
Confidence 55567766777777889999999999998753 234566766666777889999999999999986 33347899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPE-KVD---------EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (566)
+....++...+++++|.+.|+.... .|+ +..-..++..-.+ +|+..|..+++++++++|.....|..|+
T Consensus 466 ~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tla 544 (606)
T KOG0547|consen 466 NLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLA 544 (606)
T ss_pred HHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 9999999999999999999998754 122 2223333333333 8999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHH
Q 042098 523 KIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~ 542 (566)
.+..+.|+.++|+++|++..
T Consensus 545 q~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 545 QFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999998764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-15 Score=139.16 Aligned_cols=256 Identities=14% Similarity=0.106 Sum_probs=114.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC-CC---C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 042098 260 ALIDMYGKCGALVPARRVFDAM-VN---K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334 (566)
Q Consensus 260 ~li~~~~~~g~~~~A~~~~~~~-~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 334 (566)
.+...+.+.|++++|+++++.. .. + |+..|..+.......++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3456666777777777777432 11 2 3444444555555677777777777777665422 33444444444 455
Q ss_pred CChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH
Q 042098 335 GALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414 (566)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~ 414 (566)
++++.|..+.....+. .++...+..++..+...++++++..+++++..... .+++..
T Consensus 91 ~~~~~A~~~~~~~~~~----------------------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 147 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER----------------------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-APDSAR 147 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HH
T ss_pred cccccccccccccccc----------------------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-CCCCHH
Confidence 5555555444332221 13455677788888999999999999999875431 356777
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGAC 491 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~ 491 (566)
.|..+...+.+.|+.++|.+.+++..+. .|+ ......++..+...|+.+++.++++..... .++..|..+..++
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAY 224 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence 8888888899999999999999999876 675 778888999999999999988887776543 4567788899999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
...|+.++|...++++.+..|+|+.+...++.++...|+.++|.++.+++.+
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999887654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-12 Score=125.23 Aligned_cols=321 Identities=12% Similarity=0.133 Sum_probs=204.7
Q ss_pred hcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCC-CHHHHHHHHHHhcCCCCchhHHH
Q 042098 166 RCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP-DEITLVSVLGSCGDLGDLVLGKW 241 (566)
Q Consensus 166 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~ 241 (566)
-.|++++|.+++.++.+ .+...|..|...|-..|+.+++...+-.. ....| |...|..+.......|.+++|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 34888888888888875 35678888888888888888887766433 33444 44566666666666667777777
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh----h----HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042098 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV----V----TWNAMITAYAQNGLSNEAIMLFNRMK 313 (566)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (566)
.|.++++..+.- ...+-.-+..|-+.|+...|..-|.++.+.++ . .--.+++.+...++.+.|.+.++...
T Consensus 229 cy~rAI~~~p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQANPSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcCCcc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 766666665442 22222344555556666666555555533211 1 11111222333333333333333332
Q ss_pred HCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChH
Q 042098 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393 (566)
Q Consensus 314 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 393 (566)
.. +.. .-+...++.++..|.+...++
T Consensus 308 s~-----------------------------------~~~-------------------~~~~ed~ni~ael~l~~~q~d 333 (895)
T KOG2076|consen 308 SK-----------------------------------EKD-------------------EASLEDLNILAELFLKNKQSD 333 (895)
T ss_pred hh-----------------------------------ccc-------------------cccccHHHHHHHHHHHhHHHH
Confidence 21 000 012334666777777777777
Q ss_pred HHHHHHHHHHhCC-------------------------CCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC
Q 042098 394 EALLLFERMSKEG-------------------------GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448 (566)
Q Consensus 394 ~A~~~~~~m~~~g-------------------------~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 448 (566)
.|......+.... ....++...+ .+.-++.+....+....+..-.... .+.|.
T Consensus 334 ~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~ 411 (895)
T KOG2076|consen 334 KALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVED-NVWVS 411 (895)
T ss_pred HhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHh-cCChh
Confidence 7777776665521 0012222221 1222233333333333333333333 54443
Q ss_pred --hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 449 --SEHYSCMVDLYARAGHLSEAWDFVERMPEK---VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 449 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
...|.-+.++|.+.|++.+|+.++..+... .+...|--+..++...|.+++|.+.+++++...|++..+...|+.
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Las 491 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLAS 491 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHH
Confidence 678999999999999999999999999876 346689999999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHhCC
Q 042098 524 IFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 524 ~~~~~g~~~~A~~~~~~~~~~g 545 (566)
++.+.|+.++|.+++..+..-+
T Consensus 492 l~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHhcCCHHHHHHHHhcccCCC
Confidence 9999999999999999877433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-10 Score=114.29 Aligned_cols=490 Identities=11% Similarity=0.054 Sum_probs=304.8
Q ss_pred cCCCCchHHHHHHHHHHhCC-CCChHHHHHhh--cCCCchhHHHHhhcC---CCCCcchHHHHHHHHHcCCCChhHHHHH
Q 042098 33 KCPSTKTVQQIHTQMLINFI-QKPNFLLIRII--DLKDFNYASLLFHQI---SRPNEYAFNVMIRGLTTAWQKYSHSLKL 106 (566)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 106 (566)
+-|+...+..|...+.+..+ .+-++-.-+.+ ..|+.+++...+-.. .+.|...|-.+-.-..+. |++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~-~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL-GNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc-ccHHHHHHH
Confidence 33777777777777766643 23333333333 778888888776544 344556777777777777 888888888
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHH----HHHHHHHhcCCHHHHHHHHhccCC
Q 042098 107 YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH----SLITMYARCGKLDSARKVFDEIRE 182 (566)
Q Consensus 107 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~~~~~~A~~~~~~~~~ 182 (566)
|.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-.. ..+..+...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888763 3344444445566778888888888888888764422322222 334555666777888887776654
Q ss_pred -----CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCC---------------------------CCHHHHHHHHHHh
Q 042098 183 -----RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL---------------------------PDEITLVSVLGSC 230 (566)
Q Consensus 183 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------p~~~t~~~ll~~~ 230 (566)
-+...++.++..|.+...++.+......+...... ++... .-+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 24557888888888888888888888777652111 12112 1222334
Q ss_pred cCCCCchhHHHHHHHHHHhC--CCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHHcCCHHH
Q 042098 231 GDLGDLVLGKWVEGFVVKNK--MDLNFYMGSALIDMYGKCGALVPARRVFDAMVN----KDVVTWNAMITAYAQNGLSNE 304 (566)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~ 304 (566)
.+....+....+.....+.. +.-+...|..+..+|...|++.+|+.+|..+.. .+...|-.+..+|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 45566666666777777766 344556777888888888888888888888744 355678888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCChhHHHHHHHHHHHhC--------CCCccc-----------cCCHHHH
Q 042098 305 AIMLFNRMKYAGVNPDKI-TLIGVLSACASIGALDLGKWVDKYASQRG--------LRHDIF-----------CGSIDDA 364 (566)
Q Consensus 305 a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~-----------~~~~~~A 364 (566)
|++.|+..... .|+.. .-..|-..+.+.|+.++|.+.+..+..-+ ..++.. .|+.++-
T Consensus 468 A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 468 AIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 88888888764 44433 23334445667788888877777654211 011100 1111110
Q ss_pred HHH--------------------------------------------------------------------HccCCCCCh
Q 042098 365 LKV--------------------------------------------------------------------FEDMPVTNE 376 (566)
Q Consensus 365 ~~~--------------------------------------------------------------------~~~~~~~~~ 376 (566)
..+ +..+...+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 000 000000111
Q ss_pred -hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH---HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC---h
Q 042098 377 -VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND---VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK---S 449 (566)
Q Consensus 377 -~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~---~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~ 449 (566)
..+.-++..+++.+++++|+.+...+........++. ..-...+.+++..+++..|...++.+...+++..+ .
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 2345677788899999999999888876542122332 12244556677889999999999988877555444 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE-KVDE--IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
..|+...+.+.+.++-.--.+.+..... +|+. ........-....+.+..|...+-++....|++|-+-..++-++.
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 4556555666666654444444443332 2332 222222233455678888999999999999998887777766654
Q ss_pred h
Q 042098 527 N 527 (566)
Q Consensus 527 ~ 527 (566)
.
T Consensus 786 h 786 (895)
T KOG2076|consen 786 H 786 (895)
T ss_pred H
Confidence 3
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-11 Score=120.57 Aligned_cols=286 Identities=10% Similarity=0.049 Sum_probs=155.2
Q ss_pred cCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 042098 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277 (566)
Q Consensus 198 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 277 (566)
.|+++.|.+.+....+..-.| ...|.....+....|+.+.+...+..+.+...+............+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 577777776666544332111 2223333444467777788877777776655444333333446778888899999888
Q ss_pred HhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 042098 278 FDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354 (566)
Q Consensus 278 ~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 354 (566)
++.+.+ | ++.....+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~-------------------------- 228 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE-------------------------- 228 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH--------------------------
Confidence 888744 3 5667788888899999999999999999887654322 111110
Q ss_pred ccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHH
Q 042098 355 DIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434 (566)
Q Consensus 355 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~ 434 (566)
..+|..++.......+.+...++++.+.+. .+.++.....+..++...|+.++|..
T Consensus 229 ---------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 229 ---------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred ---------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 001112222222222333444444443322 22344445555555555555555555
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 435 LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 435 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
++++..+. .|+.... ++.+....++.+++++..+...++ |+ ...+.++...|...+++++|.+.|+++.+..|
T Consensus 285 ~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 55555432 2332111 122223335555555555554432 32 23344555555666666666666666665555
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 513 SNSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 513 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
++ ..+..++.++.+.|+.++|.+++++.
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 53 23445556666666666666555544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-10 Score=104.21 Aligned_cols=468 Identities=11% Similarity=0.043 Sum_probs=327.2
Q ss_pred HHHHHHHHHhCCCCChHHHHHhh----cCCCchhHHHHhhcCCC--CCcc-hHHHHHHHHHcCCCChhHHHHHHHHHHHC
Q 042098 41 QQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISR--PNEY-AFNVMIRGLTTAWQKYSHSLKLYYQMKRL 113 (566)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~----~~g~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 113 (566)
++|++....-. ..+..++-.++ ++..++.|+.+++.... |-+. .|.--+..--.- |++..|.++|+...+
T Consensus 93 RSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L-gNi~gaRqiferW~~- 169 (677)
T KOG1915|consen 93 RSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML-GNIAGARQIFERWME- 169 (677)
T ss_pred HHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-cccHHHHHHHHHHHc-
Confidence 45555554443 33444555555 89999999999998632 2222 333333333344 899999999999887
Q ss_pred CCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC------CChhH
Q 042098 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE------RDLVS 187 (566)
Q Consensus 114 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~ 187 (566)
..|+...|.+.+..=.+...++.|..+++...-. .|++.+|-.....-.+.|....|..+|+...+ -+...
T Consensus 170 -w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~l 246 (677)
T KOG1915|consen 170 -WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEIL 246 (677)
T ss_pred -CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4899999999999999999999999999998764 59999999999999999999999999988765 13345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC--HHHHHHHHHHhcCCCCchhHHHHHH---HHHH----hCCCchHHHH
Q 042098 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPD--EITLVSVLGSCGDLGDLVLGKWVEG---FVVK----NKMDLNFYMG 258 (566)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~---~~~~----~~~~~~~~~~ 258 (566)
+.++..--.++..++.|.-+|+-..+. ++.+ ...|......--+-|+........- .+.- ..-+.|-.+|
T Consensus 247 fvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW 325 (677)
T KOG1915|consen 247 FVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH
Confidence 666666666778899999999888764 3333 3445555555455566655554442 2111 1123355677
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC-----hhHHHHHHH--------HHHHcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKD-----VVTWNAMIT--------AYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~--------~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 325 (566)
-..+..-...|+.+...++|+.....- ...|.-.|- .=....+++.+.++|+...+. ++-...||.
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFa 404 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFA 404 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHH
Confidence 778888888899999999999984421 112322221 123478899999999999883 444556776
Q ss_pred HHHHHHh----ccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 042098 326 GVLSACA----SIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401 (566)
Q Consensus 326 ~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 401 (566)
-+=-.++ +..++..|..++...+.. .|...+|...|..-.+.++++....+|++
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~----------------------cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGK----------------------CPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcc----------------------CCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5433332 344555555555544432 46677888899999999999999999999
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC
Q 042098 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD 480 (566)
Q Consensus 402 m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 480 (566)
..+.+ +-+..+|......-...|+.+.|..+|+..+....+.-....+.+.|+.=...|.+++|..+++++.++ +-
T Consensus 463 fle~~---Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 463 FLEFS---PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHhcC---hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 99975 456788888888888899999999999998876333334567888888888999999999999999875 56
Q ss_pred HHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHhhC----CCCc--hhHHHHHHHHHhCCChHHHHHHH
Q 042098 481 EIVLGALLGACQ-----KQK-----------NTDVSQRVMQLLLEIE----SSNS--GNYVISSKIFANLKMWDDSAKMR 538 (566)
Q Consensus 481 ~~~~~~l~~~~~-----~~~-----------~~~~A~~~~~~~~~~~----p~~~--~~~~~l~~~~~~~g~~~~A~~~~ 538 (566)
..+|-++..--. +.+ ....|..+|+++.... |... .....+.+.-...|...+...+-
T Consensus 540 ~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~ 619 (677)
T KOG1915|consen 540 VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQ 619 (677)
T ss_pred chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 667777664322 333 5678999999987652 3222 23334445555666666655555
Q ss_pred HHH
Q 042098 539 ALM 541 (566)
Q Consensus 539 ~~~ 541 (566)
.+|
T Consensus 620 s~m 622 (677)
T KOG1915|consen 620 SKM 622 (677)
T ss_pred Hhc
Confidence 554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-11 Score=118.03 Aligned_cols=366 Identities=10% Similarity=-0.062 Sum_probs=216.3
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHH
Q 042098 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262 (566)
Q Consensus 183 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 262 (566)
++..+|.+++.+-..+|+.+.|..++.+|+++|++.+..-|-.++-+ .++...+..++.-|...|+.|+..|+..-+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 67788888998888899999999999999999998888777666655 778888888899999999999999888777
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCH-----HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCh
Q 042098 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS-----NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337 (566)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 337 (566)
..+...|....+.+....-.--....+..+..+.....+. .-....+.+..-.|+......|...+ -....|.-
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~ 357 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKG 357 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCC
Confidence 7666655532222211110000111223333221111111 11222233333334443333333222 22335666
Q ss_pred hHHHHHHHHHHHhCCCCc--cccCCHHHHHHHHccCCCCChh-HHHHHHHHHHH---cCChHHHHHHHHHHHhCC-----
Q 042098 338 DLGKWVDKYASQRGLRHD--IFCGSIDDALKVFEDMPVTNEV-SWNAMISALAF---NGRAHEALLLFERMSKEG----- 406 (566)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~~~~~~A~~~~~~m~~~g----- 406 (566)
+...++...+........ .+..--..+.+.|.++..+... .|+ .-.+... .....+..++......+.
T Consensus 358 e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~l 436 (1088)
T KOG4318|consen 358 EEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQL 436 (1088)
T ss_pred chHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHH
Confidence 666666655544222211 1101112244555555533322 222 1122211 222233333322221110
Q ss_pred ---------CCCCC-------CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 042098 407 ---------GAARP-------NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470 (566)
Q Consensus 407 ---------~~~~p-------~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 470 (566)
.+..| -...-+.++..|+..-+..++...-+..... -+ ...|..|++.++..++.+.|..
T Consensus 437 v~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~ 512 (1088)
T KOG4318|consen 437 VGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALS 512 (1088)
T ss_pred hhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHh
Confidence 00111 1122344555666666666666555444332 22 2789999999999999999999
Q ss_pred HHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 471 FVERMPEK-----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI---ESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 471 ~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
+.++...+ .+..-+..+.+...+.+....+..+++++.+. .|....+...+.+.....|+-+...++.+-+.
T Consensus 513 ~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 513 FVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred chhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 99998753 45566777888888999999999999998874 24445667777888889999999999999999
Q ss_pred hCCCcc-CCceeEEEe
Q 042098 543 EKGVSK-TPGCSWIGI 557 (566)
Q Consensus 543 ~~g~~~-~~~~~~~~~ 557 (566)
..|+.. -|-+...+.
T Consensus 593 slgl~etgPl~~vhLr 608 (1088)
T KOG4318|consen 593 SLGLSETGPLWMVHLR 608 (1088)
T ss_pred HhhhhhcccceEEEee
Confidence 999887 343344443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.8e-12 Score=113.42 Aligned_cols=430 Identities=12% Similarity=0.074 Sum_probs=278.1
Q ss_pred HHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHH-HHHHHHccCChhHHHHHHHHHHHhCCCCch----hHHHHHHHHHH
Q 042098 91 RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF-VFISCANLLALNHGVSVHSSVFKIGLDEDD----HVSHSLITMYA 165 (566)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~ 165 (566)
+-|..+ ....+|+..|+-+.+...-|+.-.... +-..+.+.+.+.+|.+.++..+..-...+. ...+.+--.+.
T Consensus 209 qqy~~n-dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 209 QQYEAN-DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHhhhh-HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 345555 667888999998888877777655432 334566788899999998887765332222 23444445677
Q ss_pred hcCCHHHHHHHHhccCC--CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHH
Q 042098 166 RCGKLDSARKVFDEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243 (566)
Q Consensus 166 ~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 243 (566)
+.|+++.|+..|+...+ ||..+--.|+-++..-|+.++..+.|.+|..-...||..-|. ....+++.. ++
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi------~~~ddp~~~--ll 359 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI------KEKDDPDDN--LL 359 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc------CCcCCcchH--HH
Confidence 88999999999988765 676654444445556788999999999997655555544330 001111100 00
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHhcC--CHHHH----HHHHhcCCCCChh-------------HH--------HHHHHHH
Q 042098 244 GFVVKNKMDLNFYMGSALIDMYGKCG--ALVPA----RRVFDAMVNKDVV-------------TW--------NAMITAY 296 (566)
Q Consensus 244 ~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A----~~~~~~~~~~~~~-------------~~--------~~li~~~ 296 (566)
.+.++ +-.+.-..+.. +.+++ .++..-+..|+-. .+ -.-...+
T Consensus 360 ~eai~----------nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 360 NEAIK----------NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred HHHHh----------hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 00000 01111111111 11111 1122222222210 00 0112357
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH--HHHHhccCChhHHHHHHHHHHHhCCCCcc----------ccCCHHHH
Q 042098 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGV--LSACASIGALDLGKWVDKYASQRGLRHDI----------FCGSIDDA 364 (566)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~A 364 (566)
.++|+++.|+++++-+.+.+-+.....-+.+ +.-+....++..|.++-+........... ..|++++|
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence 8999999999999988766433332222222 22222233566666665555443211110 06999999
Q ss_pred HHHHccCCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHH
Q 042098 365 LKVFEDMPVTNEVSWNAMI---SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441 (566)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 441 (566)
.+.|++....|...-.+|. -.+-..|+.++|+.+|-++..- +..+...+..+...|....+...|++++-+...
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i---l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI---LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 9999998876655444433 3466789999999999888653 345677777888889999999999999977653
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 042098 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM-PE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519 (566)
Q Consensus 442 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (566)
-++.|+.+.+-|.+.|-+.|+-.+|.+.+-.- .- ..+..+..-|..-|....-+++++.+|+++.-+.|.-..+-.
T Consensus 587 --lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 587 --LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred --cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 23445889999999999999999999875443 22 246667777777788888899999999999988998777777
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 520 ISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 520 ~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
.++.++.+.|+|++|..+++...++
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8889999999999999999988764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-11 Score=120.37 Aligned_cols=287 Identities=16% Similarity=0.080 Sum_probs=165.8
Q ss_pred hcCChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHH
Q 042098 197 KMGYAKEAVELFGRMREEEFLPDEI-TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275 (566)
Q Consensus 197 ~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 275 (566)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+...+....+..+.+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 468888888888776553 34433 333445666777888888888888776655544444445577888899999999
Q ss_pred HHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 042098 276 RVFDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352 (566)
Q Consensus 276 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 352 (566)
..++.+.+ | +...+..+...+.+.|++++|.+++..+.+.++.++......-..+. .+..+.+..
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~--~~~l~~~~~---------- 241 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE--IGLLDEAMA---------- 241 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HHHHHHHHH----------
Confidence 99888844 3 55678888889999999999999999999886543322211111111 000000000
Q ss_pred CCccccCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHH---HHHHHHHhhh
Q 042098 353 RHDIFCGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF---IGVLSACVHA 426 (566)
Q Consensus 353 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~---~~ll~~~~~~ 426 (566)
....+...+.++..+ +.+...+..+...+...|+.++|.+++++..+.. ||.... ....-.....
T Consensus 242 -----~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 242 -----DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----GDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred -----hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----CCcccchhHHHHHhhhcCC
Confidence 011222223333333 2356667777777777777777777777777643 333211 1111112233
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-h--hHHHHHHHHHHhcCCHHHHHHHHHh--CC-CCCCHHHHHHHHHHHHhcCCHHHH
Q 042098 427 GLVDEGRRLFDLMSSSFGLIPK-S--EHYSCMVDLYARAGHLSEAWDFVER--MP-EKVDEIVLGALLGACQKQKNTDVS 500 (566)
Q Consensus 427 g~~~~A~~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~A 500 (566)
++.+.+.+.++...+. .|+ + ....++...+.+.|++++|.+.|+. .. ..|+...+..+...+.+.|+.++|
T Consensus 313 ~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred CChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5555666666555543 233 2 3444555666666666666666662 22 235555555556666666666666
Q ss_pred HHHHHHHHh
Q 042098 501 QRVMQLLLE 509 (566)
Q Consensus 501 ~~~~~~~~~ 509 (566)
.+++++.+.
T Consensus 390 ~~~~~~~l~ 398 (409)
T TIGR00540 390 AAMRQDSLG 398 (409)
T ss_pred HHHHHHHHH
Confidence 666665543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-11 Score=120.70 Aligned_cols=282 Identities=13% Similarity=0.062 Sum_probs=156.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHH--HHHHHHHhcCCHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH--SLITMYARCGKLDSARK 175 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~~~~~~A~~ 175 (566)
|++++|.+.+....+.+-.| ...|.....+..+.|+++.|.+.++++.+. .|+..... .....+...|+++.|..
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 77888777776655432111 122222233446777888888888777654 34443222 33566777788888888
Q ss_pred HHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCC
Q 042098 176 VFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252 (566)
Q Consensus 176 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (566)
.++.+.+ .+......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------- 228 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------- 228 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-------------------------
Confidence 7777765 25566777777788888888888888887766544221 111000
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 042098 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329 (566)
Q Consensus 253 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 329 (566)
..+|..++.......+.+...++++.+++ .++.....+...+...|+.++|..++++..+. .|+.... ++.
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~ 302 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLI 302 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHH
Confidence 01122233333344456666677777644 46777888888999999999999999888774 4443211 112
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 042098 330 ACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409 (566)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~ 409 (566)
+....++.+.+....+...+... .|...+.++...+.+.+++++|.+.|+...+.
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~~P---------------------~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---- 357 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQHG---------------------DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---- 357 (398)
T ss_pred hhccCCChHHHHHHHHHHHhhCC---------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----
Confidence 22222333333333332222111 13334444555555555555555555555542
Q ss_pred CCCHHHHHHHHHHHhhhCcHHHHHHHHHHh
Q 042098 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439 (566)
Q Consensus 410 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 439 (566)
.|+..++..+...+.+.|+.++|.+++++-
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 255555555555555555555555555443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-12 Score=124.30 Aligned_cols=284 Identities=12% Similarity=0.063 Sum_probs=176.6
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC--CchHHHHHHHHHHHHhcCCHHH-HHHH
Q 042098 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM--DLNFYMGSALIDMYGKCGALVP-ARRV 277 (566)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~-A~~~ 277 (566)
..+|+..|.+.... +.-+......+..+|...+++++++.+|+.+.+..+ ..+..+|.+.+.-+-+.=.+.. |..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45566666663332 222233444455566666666666666665555432 1234445555443332211111 1111
Q ss_pred HhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccc
Q 042098 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357 (566)
Q Consensus 278 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 357 (566)
.+ +-...+.+|-++..+|.-+++.+.|++.|++..+. .|+
T Consensus 414 i~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~------------------------------------- 453 (638)
T KOG1126|consen 414 ID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPR------------------------------------- 453 (638)
T ss_pred Hh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCc-------------------------------------
Confidence 11 12224456666666666666666666666655542 221
Q ss_pred cCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHH
Q 042098 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437 (566)
Q Consensus 358 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 437 (566)
...+|+.+..-+.....+|.|...|+...... +-+-..|-.+...|.+.++++.|+-.|+
T Consensus 454 -----------------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~---~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 454 -----------------FAYAYTLLGHESIATEEFDKAMKSFRKALGVD---PRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred -----------------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC---chhhHHHHhhhhheeccchhhHHHHHHH
Confidence 34455555555666777888888888775421 1122344455667888888888888888
Q ss_pred HhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 438 LMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 438 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
... .+.|. ......+...+.+.|+.++|++++++... ..++..--.-+..+...+++++|++.++++.+.-|++
T Consensus 514 kA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e 590 (638)
T KOG1126|consen 514 KAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE 590 (638)
T ss_pred hhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch
Confidence 776 45665 55667777888888888888888888653 2333333334556677789999999999999999999
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 515 SGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 515 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
..++..++.+|.+.|+.+.|+.-|.-+.+...+.
T Consensus 591 s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 591 SSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 9999999999999999999998887777665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-10 Score=106.56 Aligned_cols=356 Identities=13% Similarity=0.091 Sum_probs=235.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHH--HHHH
Q 042098 151 DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLV--SVLG 228 (566)
Q Consensus 151 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--~ll~ 228 (566)
..|...+-...-.+-+.|....|+..|-.....-+..|.+.+....-..+.+.+ ..... |...|..-+. .+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHHHHHHHH
Confidence 444444444444556667788888888777664444444443332222222222 22211 1221211111 2335
Q ss_pred HhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHHcCCH
Q 042098 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK------DVVTWNAMITAYAQNGLS 302 (566)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~ 302 (566)
++......+++.+-.+.....|++.+...-+....+.-...|+++|+.+|+++.+. |..+|+.++- .+..+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhH
Confidence 55566677777777777777777776666666666667777888888888888654 4456666553 332221
Q ss_pred HHHHHHHHHHHH--CCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHH
Q 042098 303 NEAIMLFNRMKY--AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380 (566)
Q Consensus 303 ~~a~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 380 (566)
. +.++.+-.. ...+| .|..++.+-|+-.++.+.|..+|++..+.+.. ...+|+
T Consensus 314 k--Ls~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~---------------------~~~aWT 368 (559)
T KOG1155|consen 314 K--LSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK---------------------YLSAWT 368 (559)
T ss_pred H--HHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc---------------------hhHHHH
Confidence 1 122221111 12333 35555566666666667777776666664432 456788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLY 459 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 459 (566)
.+..-|...++...|.+.|++..+-. +.|-..|-.|.++|.-.+...-|+-+|++... +.|+ +..|.+|..+|
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~---p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY 442 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDIN---PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECY 442 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcC---chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHH
Confidence 88888999999999999999998853 55778889999999999999999999988874 4665 78899999999
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCchhHHHHHHHHHhCCC
Q 042098 460 ARAGHLSEAWDFVERMPEKV--DEIVLGALLGACQKQKNTDVSQRVMQLLLEI-------ESSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~ 530 (566)
.+.++.++|++.|.....-. +...+..|...+.+.++.++|.+.+++-++. +|....+..-|+.-+.+.++
T Consensus 443 ~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 443 EKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred HHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc
Confidence 99999999999998876543 4477888899999999999999999988873 24344455557788888899
Q ss_pred hHHHHHHHHHHHhC
Q 042098 531 WDDSAKMRALMREK 544 (566)
Q Consensus 531 ~~~A~~~~~~~~~~ 544 (566)
+++|..+-.+....
T Consensus 523 ~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 523 FDEASYYATLVLKG 536 (559)
T ss_pred hHHHHHHHHHHhcC
Confidence 98888866555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=127.91 Aligned_cols=256 Identities=16% Similarity=0.145 Sum_probs=99.0
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCHHHH-HHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCC
Q 042098 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITL-VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA 270 (566)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 270 (566)
...+.+.|++++|++++++-.....+|+...| ..+...+...++.+.|...++.+...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 34444555555555555433322212332222 22222333344444444444444443322 22333444444 45555
Q ss_pred HHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHH
Q 042098 271 LVPARRVFDAMVN--KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348 (566)
Q Consensus 271 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 348 (566)
+++|.++++..-+ +++..+..++..+.+.++++++.++++.+....-.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------ 142 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAA------------------------------ 142 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T--------------------------------
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC------------------------------
Confidence 5555555544421 23344445555555555666555555554432110
Q ss_pred HhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhhC
Q 042098 349 QRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHAG 427 (566)
Q Consensus 349 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g 427 (566)
+++...|..+...+.+.|+.++|++.+++..+.. |+ ......++..+...|
T Consensus 143 ------------------------~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~----P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 143 ------------------------PDSARFWLALAEIYEQLGDPDKALRDYRKALELD----PDDPDARNALAWLLIDMG 194 (280)
T ss_dssp -------------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHCTTC
T ss_pred ------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCC
Confidence 1355667778888889999999999999998854 54 667778888888999
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-KV-DEIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 428 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
+.+++.++++...+. . +.|+..+..+..+|...|+.++|+..+++... .| |+.....+..++...|+.++|.++.+
T Consensus 195 ~~~~~~~~l~~~~~~-~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 195 DYDEAREALKRLLKA-A-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred ChHHHHHHHHHHHHH-C-cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999988888888765 2 45567778889999999999999999988765 34 67777778899999999999999888
Q ss_pred HHHh
Q 042098 506 LLLE 509 (566)
Q Consensus 506 ~~~~ 509 (566)
++.+
T Consensus 273 ~~~~ 276 (280)
T PF13429_consen 273 QALR 276 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 8765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-10 Score=101.93 Aligned_cols=296 Identities=14% Similarity=0.116 Sum_probs=191.2
Q ss_pred cCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC-Cch--HHHHHHHHHHHHhcCCHHHH
Q 042098 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM-DLN--FYMGSALIDMYGKCGALVPA 274 (566)
Q Consensus 198 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~li~~~~~~g~~~~A 274 (566)
+.++++|.++|-+|.+.. +.+..+-.++.+.+.+.|..+.|.+++..+.++.- +.+ ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567788888888886631 12333445666777778888888888777666432 211 22345677788899999999
Q ss_pred HHHHhcCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 042098 275 RRVFDAMVNKD---VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351 (566)
Q Consensus 275 ~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 351 (566)
+.+|..+.+.+ ......|+..|-...++++|+++-+++...|-.+. +.-|.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~----~~eIA---------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY----RVEIA---------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc----hhHHH----------------------
Confidence 99999987632 34677788999999999999999999887654432 32221
Q ss_pred CCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHhhhCcHH
Q 042098 352 LRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF-IGVLSACVHAGLVD 430 (566)
Q Consensus 352 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~-~~ll~~~~~~g~~~ 430 (566)
..|..+...+....+.++|..++.+..+.+ |+.+-- ..+.+.....|+++
T Consensus 181 -------------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~----~~cvRAsi~lG~v~~~~g~y~ 231 (389)
T COG2956 181 -------------------------QFYCELAQQALASSDVDRARELLKKALQAD----KKCVRASIILGRVELAKGDYQ 231 (389)
T ss_pred -------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhC----ccceehhhhhhHHHHhccchH
Confidence 124555566666677777888887777654 443332 33445566778888
Q ss_pred HHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042098 431 EGRRLFDLMSSSFGLIPK--SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQRVMQLL 507 (566)
Q Consensus 431 ~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 507 (566)
.|.+.++...+. +|+ +.+...|..+|...|+.++.+..+.++.+. +....-..+...-....-.+.|...+.+-
T Consensus 232 ~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 232 KAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred HHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 888888777765 444 566777778888888888887777766543 44444444444444444456666666666
Q ss_pred HhhCCCCchhHHHHHHHHH---hCCChHHHHHHHHHHHhCCCccCCcee
Q 042098 508 LEIESSNSGNYVISSKIFA---NLKMWDDSAKMRALMREKGVSKTPGCS 553 (566)
Q Consensus 508 ~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~g~~~~~~~~ 553 (566)
++..|.- ..+..++.... ..|++.+-..+++.|....++..|.+.
T Consensus 309 l~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YR 356 (389)
T COG2956 309 LRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYR 356 (389)
T ss_pred HhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCce
Confidence 6666663 33444444433 234566666777777766565555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.1e-11 Score=116.87 Aligned_cols=188 Identities=10% Similarity=0.005 Sum_probs=107.9
Q ss_pred CChhHHHHHHHHHHHCCCCCCccc-HHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFT-YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~ 176 (566)
|+++.|.+.+....+. .|+... +-....+..+.|+.+.|.+.++...+....+...+.-.....+...|+++.|...
T Consensus 98 g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 98 GDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred CCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 6777777777665554 233322 2233344556677777777777765543222222333345666667777777777
Q ss_pred HhccCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCc
Q 042098 177 FDEIRE--R-DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253 (566)
Q Consensus 177 ~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 253 (566)
++.+.+ | +...+..+...+.+.|++++|.+.+..+.+.++.+.. .+..+-.
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------- 229 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ------------------------- 229 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-------------------------
Confidence 666654 2 4455666666777777777777777777665433221 1110000
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 254 NFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
..+..++..-......+...+.+...++ .++..+..+...+...|+.++|.+++++..+.
T Consensus 230 --~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 230 --KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 0011111111222234455555665554 37778888888999999999999999999885
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-10 Score=102.72 Aligned_cols=280 Identities=14% Similarity=0.074 Sum_probs=187.7
Q ss_pred cCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 042098 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277 (566)
Q Consensus 198 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 277 (566)
.|++.+|.++..+-.+.+-.| ...|..-..+.-..||.+.+..++.++.+...+++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888766655443 3445566677778888888888888888877777788888888888999999999887
Q ss_pred HhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-------HHHHHHHHHhccCChhHHHHHHHHH
Q 042098 278 FDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI-------TLIGVLSACASIGALDLGKWVDKYA 347 (566)
Q Consensus 278 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~ 347 (566)
+++..+ .++........+|.+.|++.....++..|.+.|+--++. ++..++.-+...+..+.
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g-------- 247 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG-------- 247 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH--------
Confidence 777633 477788889999999999999999999999988655432 34444443333322222
Q ss_pred HHhCCCCccccCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh
Q 042098 348 SQRGLRHDIFCGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424 (566)
Q Consensus 348 ~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~ 424 (566)
-...+++.+ +.++..-.+++.-+.+.|+.++|.++..+..+.+ ..|+ -..+-.+.
T Consensus 248 ----------------L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~--~D~~----L~~~~~~l 305 (400)
T COG3071 248 ----------------LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ--WDPR----LCRLIPRL 305 (400)
T ss_pred ----------------HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc--cChh----HHHHHhhc
Confidence 222333333 2345555666666777777777777777776665 4444 12222345
Q ss_pred hhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042098 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-KVDEIVLGALLGACQKQKNTDVSQRV 503 (566)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 503 (566)
+.++.+.-++..+.-.+.++-. +..+.+|...|.+.+.|.+|...|+...+ +|+..+|+-+..++.+.|+.++|.+.
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHH
Confidence 5566666666665555543333 35666677777777777777777766544 37777777777777777777777777
Q ss_pred HHHHHhh
Q 042098 504 MQLLLEI 510 (566)
Q Consensus 504 ~~~~~~~ 510 (566)
.++.+..
T Consensus 384 r~e~L~~ 390 (400)
T COG3071 384 RREALLL 390 (400)
T ss_pred HHHHHHH
Confidence 7766643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.1e-11 Score=116.15 Aligned_cols=439 Identities=12% Similarity=0.029 Sum_probs=237.4
Q ss_pred CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHH
Q 042098 80 RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159 (566)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 159 (566)
.||.++|..+|.-||.. |+.+.|- +|..|.-...+.+...|+.++.+....++.+.+. .|.+.+|..
T Consensus 22 ~PnRvtyqsLiarYc~~-gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTK-GDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCchhhHHHHHHHHccc-CCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 57778888888888887 8887777 7888877777777777888887777777776665 677778888
Q ss_pred HHHHHHhcCCHHH---HHHHHhccCC---C----Ch---------------hHHHHHHHHHHhcCChhHHHHHHHHhHHC
Q 042098 160 LITMYARCGKLDS---ARKVFDEIRE---R----DL---------------VSWNSMISGYSKMGYAKEAVELFGRMREE 214 (566)
Q Consensus 160 li~~~~~~~~~~~---A~~~~~~~~~---~----~~---------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 214 (566)
|..+|.+.||+.. .++.++.+.. + .. ..-...+....-.|.++.+++++..+...
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 8888888887654 2221111110 0 00 00111222233334444444444433211
Q ss_pred -CCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC----ChhHH
Q 042098 215 -EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK----DVVTW 289 (566)
Q Consensus 215 -~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~ 289 (566)
... ++...++-+.... .-.+.+........-.++..++..++.+-...|+.+.|..++.+|.+. +..-|
T Consensus 169 a~~~----p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 169 AWNA----PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cccc----hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 011 1111244333322 222333333222222578888888888888889999999888888664 33334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHH--HhCCCCccccCCHHHHHHH
Q 042098 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS--QRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 290 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~~~~~~A~~~ 367 (566)
-.|+-+ .++...+..+++-|.+.|+.|+..|+..-+..+...|....+........ ..++......| ..|.+.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg--~~a~k~ 317 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG--LLANKR 317 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc--cHhHHH
Confidence 455443 77888888888888888999998888887777776544322211100000 00000000011 111111
Q ss_pred Hcc---------CC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHhhhCc--
Q 042098 368 FED---------MP-------VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP-NDVTFIGVLSACVHAGL-- 428 (566)
Q Consensus 368 ~~~---------~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p-~~~t~~~ll~~~~~~g~-- 428 (566)
++. .+ ......|... .-....|+-+++.++...|..--....+ +...|..++.-|.+.-+
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 111 00 1111223222 2223356666666666555432100222 23334444433332111
Q ss_pred --------------------HHHHHHHHHHh------------HHh---cCCCC-------ChhHHHHHHHHHHhcCCHH
Q 042098 429 --------------------VDEGRRLFDLM------------SSS---FGLIP-------KSEHYSCMVDLYARAGHLS 466 (566)
Q Consensus 429 --------------------~~~A~~~~~~~------------~~~---~~~~p-------~~~~~~~l~~~~~~~g~~~ 466 (566)
..+..+..... ... ....| -...-+.++..+++.-+..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111111000 000 00011 0123344555666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 467 EAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES---SNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 467 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
+++..-++....--...|..|+.-+..+...+.|..+.++....+. -+-.-+..+.+.+.+.+...++.++++++.+
T Consensus 477 K~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 477 KILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 6665544444332336788889999999999999999888876531 2345677888999999999999999999887
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-10 Score=105.88 Aligned_cols=265 Identities=12% Similarity=0.057 Sum_probs=206.1
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042098 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328 (566)
Q Consensus 252 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 328 (566)
.-+..+.....+-+...+++.+..++++.+.+. +...+-.-|.++...|+..+-..+=.+|.+. .+-...+|-++-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 334555566677777888999999998888654 4445666677888888888888888888775 234556777777
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 042098 329 SACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408 (566)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 408 (566)
--|...|..++|++.+......... =...|-.....|.-.|..++|+..|....+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~---------------------fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--- 375 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT---------------------FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--- 375 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc---------------------ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh---
Confidence 7777778888888877766553322 2346888899999999999999999888764
Q ss_pred CCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--------C
Q 042098 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--------V 479 (566)
Q Consensus 409 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~ 479 (566)
++-...-+.-+.--|.+.++.+.|.++|.+.. ++.|+ +..++-+.-.....+.+.+|..+|+..... +
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~ 452 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI 452 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc
Confidence 22222333344556888999999999998877 56665 667777777777889999999999876531 2
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 480 -DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 480 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
-.++++.|..+|++.+.+++|+..+++++...|.+..++..++-+|...|+.+.|...|.+....
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 45678889999999999999999999999999999999999999999999999999999887644
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-09 Score=98.17 Aligned_cols=287 Identities=13% Similarity=0.058 Sum_probs=196.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~ 177 (566)
|+|.+|.++..+-.+.+-.| ...|..-..+.-+.||.+.+-+++.+.-+..-.++..+.-+........|+.+.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 88888888888877765443 23344455566677888888888888877644666667777778888888888888777
Q ss_pred hccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCch
Q 042098 178 DEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254 (566)
Q Consensus 178 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (566)
+.+.+ .+........++|.+.|++.....++.+|.+.|.--+...- + ..
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~-----------le 228 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R-----------LE 228 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H-----------HH
Confidence 66553 56777888888888888888888888888887765443321 0 02
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042098 255 FYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331 (566)
Q Consensus 255 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 331 (566)
..++..+++-....+..+.-...+++.++ .++..-.+++.-+.+.|+.++|.++..+..+++..|+- .....+
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~ 304 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPR 304 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhh
Confidence 23445555555555555555566666643 46777777888889999999999999999888777661 122234
Q ss_pred hccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC
Q 042098 332 ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411 (566)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p 411 (566)
.+.++.+.-....+...+.- +.++..+.+|...|.+.+.+.+|...|+...+. .|
T Consensus 305 l~~~d~~~l~k~~e~~l~~h---------------------~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~----~~ 359 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQH---------------------PEDPLLLSTLGRLALKNKLWGKASEALEAALKL----RP 359 (400)
T ss_pred cCCCCchHHHHHHHHHHHhC---------------------CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc----CC
Confidence 44444443332222222211 123456777888888888888888888877764 48
Q ss_pred CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 412 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
+..+|+.+..++.+.|+..+|.++.++....
T Consensus 360 s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 360 SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8888888888888888888888887776643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-07 Score=90.32 Aligned_cols=463 Identities=13% Similarity=0.101 Sum_probs=266.3
Q ss_pred cCCCchhHHHHhhcCC-----CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHH
Q 042098 64 DLKDFNYASLLFHQIS-----RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 138 (566)
+.|++..-+..|+... ......|...|....+. +-++.++.+|+...+. ++..-+--+..++..+++++|
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~-~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH-GLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEA 188 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC-CChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHH
Confidence 6777777777777642 23455677777777666 7778888888887764 333356667777788888888
Q ss_pred HHHHHHHHHhC------CCCchhHHHHHHHHHHhcCCH---HHHHHHHhccCC--CC--hhHHHHHHHHHHhcCChhHHH
Q 042098 139 VSVHSSVFKIG------LDEDDHVSHSLITMYARCGKL---DSARKVFDEIRE--RD--LVSWNSMISGYSKMGYAKEAV 205 (566)
Q Consensus 139 ~~~~~~~~~~g------~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~ 205 (566)
.+.+...+... .+.+...|.-+.+..++.-+. -....+++.+.. +| ...|++|..-|.+.|.+++|.
T Consensus 189 a~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekar 268 (835)
T KOG2047|consen 189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKAR 268 (835)
T ss_pred HHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 87777765321 122222233222222222111 011112222211 11 124555555555555555555
Q ss_pred HHHHHhHHCCCCCCHHHHHHHHHHh-------------------------------------------------------
Q 042098 206 ELFGRMREEEFLPDEITLVSVLGSC------------------------------------------------------- 230 (566)
Q Consensus 206 ~~~~~m~~~~~~p~~~t~~~ll~~~------------------------------------------------------- 230 (566)
++|++....-. +..-|+.+.++|
T Consensus 269 Dvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 269 DVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 55544322100 111111111111
Q ss_pred -----------cCCCCchhHHHHHHHHHHhC-C----CchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh-------
Q 042098 231 -----------GDLGDLVLGKWVEGFVVKNK-M----DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV------- 287 (566)
Q Consensus 231 -----------~~~~~~~~a~~~~~~~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------- 287 (566)
...|+..+....+.++++.- + ..-...|..+...|-..|+++.|..+|++..+.+-.
T Consensus 347 ~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~ 426 (835)
T KOG2047|consen 347 HNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAE 426 (835)
T ss_pred ccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHH
Confidence 11223333344444443321 1 112335677888899999999999999998664332
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----------C-------CHhHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVN----------P-------DKITLIGVLSACASIGALDLGKWVDKYASQR 350 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----------p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 350 (566)
+|......=.+..+++.|+.+++....-.-. | +...|...++.--..|-++....+++.+...
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444444445677888888888776432111 1 1223344444555667888888888888876
Q ss_pred CCC-Cccc---------cCCHHHHHHHHccCC----CCCh-hHHHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCCC
Q 042098 351 GLR-HDIF---------CGSIDDALKVFEDMP----VTNE-VSWNAMISALAF---NGRAHEALLLFERMSKEGGAARPN 412 (566)
Q Consensus 351 ~~~-~~~~---------~~~~~~A~~~~~~~~----~~~~-~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~~~p~ 412 (566)
.+. |... ..-++++.++|+.-. .|++ ..|+..+.-+.+ ....+.|..+|++..+ | .+|.
T Consensus 507 riaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~--Cpp~ 583 (835)
T KOG2047|consen 507 RIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G--CPPE 583 (835)
T ss_pred hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c--CCHH
Confidence 654 3222 466888889998765 4444 367776665554 2358999999999998 6 5565
Q ss_pred HHHHHHHHHH--HhhhCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHH-
Q 042098 413 DVTFIGVLSA--CVHAGLVDEGRRLFDLMSSSFGLIPK--SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGA- 486 (566)
Q Consensus 413 ~~t~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~- 486 (566)
..-+..|+-+ --+.|....|+.++++... ++.+. ...|+..|.--...=-+..-..+|++..+. |+...-..
T Consensus 584 ~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mc 661 (835)
T KOG2047|consen 584 HAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMC 661 (835)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHH
Confidence 4332222222 2346889999999999765 45554 457777776444333333444455544432 44433322
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHhhC-CC-CchhHHHHHHHHHhCCChHHHHHHH
Q 042098 487 --LLGACQKQKNTDVSQRVMQLLLEIE-SS-NSGNYVISSKIFANLKMWDDSAKMR 538 (566)
Q Consensus 487 --l~~~~~~~~~~~~A~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (566)
+...-.+.|..++|..++....+.- |. +...|..+-..-.+.|+-+...+++
T Consensus 662 lrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 662 LRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3355667899999999999888875 43 5667888888888999965555544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8e-09 Score=95.23 Aligned_cols=161 Identities=12% Similarity=0.116 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYS 453 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~ 453 (566)
+.|..++..-|.-.++.++|...|++..+.+ |. ...|+.+..-|....+...|++-++..++ +.| |-..|-
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN----p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWY 402 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLN----PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWY 402 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcC----cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHh
Confidence 4466777778888899999999999999865 54 45677777789999999999999999984 455 467899
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
.|..+|.-.+...-|+-.|++... +.|...|.+|..+|.+.++.++|+..|.++...+..+...+..|+++|.+.++.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 999999999999999999999865 368899999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHHh
Q 042098 532 DDSAKMRALMRE 543 (566)
Q Consensus 532 ~~A~~~~~~~~~ 543 (566)
++|.+.+++..+
T Consensus 483 ~eAa~~yek~v~ 494 (559)
T KOG1155|consen 483 NEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999988775
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-09 Score=94.99 Aligned_cols=201 Identities=18% Similarity=0.206 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-----HhccCChhHHHHHHHHHHHhCCCCccccCCHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA-----CASIGALDLGKWVDKYASQRGLRHDIFCGSID 362 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 362 (566)
+--.|+--|.+++++.+|..+.+++.. ..|-......++.+ .........|.+.+..+-.++..-|
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD------- 357 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD------- 357 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc-------
Confidence 344455567889999999988876532 12322222222221 1222234445555555555554433
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
++.--.++.+.+.-..++++++-.+..+... +..|...--.+..+.+..|.+.+|+++|-++...
T Consensus 358 ------------TIpGRQsmAs~fFL~~qFddVl~YlnSi~sY---F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 358 ------------TIPGRQSMASYFFLSFQFDDVLTYLNSIESY---FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred ------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 2333455666666677899999998888776 3344444445788999999999999999777532
Q ss_pred cCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 443 FGLIPKSEHYS-CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL-LGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 443 ~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
.+ .|..+|. .|.++|.+.|.++-|++++-++....+..+...+ .+-|.+.+.+--|-+.|+.+...+|..
T Consensus 423 -~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 423 -EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred -hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 22 3455664 5668999999999999999988765455554444 488999999999999999999888753
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-10 Score=102.58 Aligned_cols=166 Identities=10% Similarity=0.005 Sum_probs=134.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 455 (566)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++..............+..+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 141 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLN---PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENA 141 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHH
Confidence 4456667778888899999999999888764 3455677777888888999999999999887642222234567778
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (566)
...+...|++++|.+.+++.... .+...+..+...+...|++++|...++++.+..|.++..+..++.++...|+.++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 88899999999999999887653 3456778888999999999999999999999888888888899999999999999
Q ss_pred HHHHHHHHHhC
Q 042098 534 SAKMRALMREK 544 (566)
Q Consensus 534 A~~~~~~~~~~ 544 (566)
|..+.+.+.+.
T Consensus 222 a~~~~~~~~~~ 232 (234)
T TIGR02521 222 AQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhh
Confidence 99998877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-10 Score=109.93 Aligned_cols=175 Identities=11% Similarity=0.028 Sum_probs=103.8
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC------CChhHHHHHHHHHHhcCChhHHHHH
Q 042098 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE------RDLVSWNSMISGYSKMGYAKEAVEL 207 (566)
Q Consensus 134 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~ 207 (566)
+..+|...|+.+... +.-+.++..-+..+|...+++++|+++|+.+.+ .+...|.+.+..+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 345566666663332 222335555666666666666666666666654 2555666655443321 12222
Q ss_pred HH-HhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh
Q 042098 208 FG-RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV 286 (566)
Q Consensus 208 ~~-~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 286 (566)
+- .+.+. -+-.+.||..+.+.|..+++.+.|...|++.++.++. ...+|+.+..-+.....+|.|...|+.....|+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 21 12111 1223456666666666666666666666665554332 345566666666777788888888888877777
Q ss_pred hHHHH---HHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 287 VTWNA---MITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 287 ~~~~~---li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
..||+ +...|.+.++++.|+-.|++..+-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcC
Confidence 76665 445678888888888888887764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7e-09 Score=91.24 Aligned_cols=227 Identities=11% Similarity=0.058 Sum_probs=142.8
Q ss_pred chHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCc---hhHHHHH
Q 042098 84 YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED---DHVSHSL 160 (566)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l 160 (566)
..|-.-+..+.. +++++|.++|-+|.+.. +-+..+--+|-+.+.+.|..+.|.++++.+.++.--+. ......|
T Consensus 37 r~Yv~GlNfLLs--~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 37 RDYVKGLNFLLS--NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred HHHHhHHHHHhh--cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455555555544 57999999999998853 22444556677778889999999999998887421111 1234457
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHH----HHHHHHHHhcCC
Q 042098 161 ITMYARCGKLDSARKVFDEIRER---DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI----TLVSVLGSCGDL 233 (566)
Q Consensus 161 i~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~ 233 (566)
..-|...|-+|.|+.+|..+.+. -......|+..|-+..+|++|+++-+++.+.+..+... .|..+...+...
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 77888999999999999998873 24467788999999999999999999998766555432 344444444455
Q ss_pred CCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh----HHHHHHHHHHHcCCHHHHHHHH
Q 042098 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV----TWNAMITAYAQNGLSNEAIMLF 309 (566)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~ 309 (566)
.+++.|..++....+.++.- +..--.+.+.+...|+++.|.+.++.+.+.|+. +...|..+|.+.|+.++....+
T Consensus 194 ~~~d~A~~~l~kAlqa~~~c-vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQADKKC-VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhCccc-eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 55555555555555544331 111123444455555555555555555443332 2334444555555555555555
Q ss_pred HHHHH
Q 042098 310 NRMKY 314 (566)
Q Consensus 310 ~~m~~ 314 (566)
..+.+
T Consensus 273 ~~~~~ 277 (389)
T COG2956 273 RRAME 277 (389)
T ss_pred HHHHH
Confidence 55444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-08 Score=92.61 Aligned_cols=441 Identities=10% Similarity=0.078 Sum_probs=263.5
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042098 90 IRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169 (566)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 169 (566)
++-+..+ +++++|.....++...+ +-|...+.+-+.++.+.+.+++|+.+.+.-.. ...+.+-+-.-.-+..+.+.
T Consensus 19 ln~~~~~-~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKN-GEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccc-hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHccc
Confidence 4566677 89999999999998865 44666788888889999999999966543221 11111111111223356799
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCH-HHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 042098 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE-ITLVSVLGSCGDLGDLVLGKWVEGFVVK 248 (566)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 248 (566)
.|+|+..++....-+..+...-...+.+.|++++|+++|+.+.+.+..-.. ..-..++.+-... .+. .+..
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----LLQS 166 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----HHHh
Confidence 999999999666666656666677888999999999999999776543222 2222233221110 010 1122
Q ss_pred hCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCCh-----h-----HHHHHHHHHHHcCCHHHHHHH
Q 042098 249 NKMDL--NFYMGSALIDMYGKCGALVPARRVFDAM--------VNKDV-----V-----TWNAMITAYAQNGLSNEAIML 308 (566)
Q Consensus 249 ~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~-----~-----~~~~li~~~~~~~~~~~a~~~ 308 (566)
....| +-..+-.....+...|++.+|+++++.. .+.|. . .---+.-.+...|+..+|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 22222 1222223455677889999999999887 22111 1 112244466789999999999
Q ss_pred HHHHHHCCCCCCHhH----HHHHHHHHhccCChhH--HHHHHHHHHH--------------------hCCCCccccCCHH
Q 042098 309 FNRMKYAGVNPDKIT----LIGVLSACASIGALDL--GKWVDKYASQ--------------------RGLRHDIFCGSID 362 (566)
Q Consensus 309 ~~~m~~~g~~p~~~~----~~~ll~~~~~~g~~~~--a~~~~~~~~~--------------------~~~~~~~~~~~~~ 362 (566)
+........ +|... .|.++ ++..-.++.. ....++.... ...-.....+..+
T Consensus 247 y~~~i~~~~-~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 247 YVDIIKRNP-ADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHhcC-CCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 999988753 34322 22222 2222222111 0111110000 0000000145556
Q ss_pred HHHHHHccCCCCC-hhHHHHHHHHHH--HcCChHHHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHhhhCcHHHHHHHHH
Q 042098 363 DALKVFEDMPVTN-EVSWNAMISALA--FNGRAHEALLLFERMSKEGGAARPND--VTFIGVLSACVHAGLVDEGRRLFD 437 (566)
Q Consensus 363 ~A~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~ 437 (566)
.+.++...++... ...+..++.... +...+.++.+++...-+.. |.. ......+......|+++.|.+++.
T Consensus 325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~----p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH----PEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC----CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6666666665222 334444443322 2335778888888877654 443 344455666788999999999998
Q ss_pred --------HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCCHHH----HHHHHHHHHhcCCHHHH
Q 042098 438 --------LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-----KVDEIV----LGALLGACQKQKNTDVS 500 (566)
Q Consensus 438 --------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~----~~~l~~~~~~~~~~~~A 500 (566)
.+.+. +. .+.+..++...+.+.++-+-|..++.+... .+.... +.-+...-.+.|+.++|
T Consensus 401 ~~~~~~~ss~~~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSILEA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhhhh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 44332 33 345666788888888887666666665432 122223 33333444567999999
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEe
Q 042098 501 QRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557 (566)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~ 557 (566)
...++++++.+|++..+...++.+|+.. +.+.|..+-+ .+.+.++..-+.|
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k-----~L~p~~~l~~vdV 528 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK-----KLPPLKGLKAVDV 528 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh-----cCCCcccchhcCc
Confidence 9999999999999999999998888775 5666666543 3444444443333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-09 Score=104.58 Aligned_cols=235 Identities=15% Similarity=0.175 Sum_probs=149.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC----------CChh-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVN----------KDVV-TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV 327 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 327 (566)
..|...|...|++++|..+++...+ +.+. ..+.+...|...+++++|..+|+++..- .
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-----------~ 271 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-----------R 271 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----------H
Confidence 3355555555555555555554321 2222 2334667788889999999999888542 1
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHh---
Q 042098 328 LSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK--- 404 (566)
Q Consensus 328 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--- 404 (566)
...+... . +.-..+++.|..+|++.|++++|...+++..+
T Consensus 272 e~~~G~~---h----------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~ 314 (508)
T KOG1840|consen 272 EEVFGED---H----------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE 314 (508)
T ss_pred HHhcCCC---C----------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 1111100 0 00123455556666666666666655555432
Q ss_pred --CCCCCCCCHH-HHHHHHHHHhhhCcHHHHHHHHHHhHHhcC--CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 042098 405 --EGGAARPNDV-TFIGVLSACVHAGLVDEGRRLFDLMSSSFG--LIPK----SEHYSCMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 405 --~g~~~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
.|. ..|... -++.+...|+..+++++|..+++...+.+. +.++ ..+++.|...|...|++++|.++++++
T Consensus 315 ~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 315 KLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred Hhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 110 123332 245555667777888888877776655432 2222 357888888899999999988888876
Q ss_pred CCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CC---CCchhHHHHHHHHHhCCChHHHHHHH
Q 042098 476 PEK----------VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI----ES---SNSGNYVISSKIFANLKMWDDSAKMR 538 (566)
Q Consensus 476 ~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p---~~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (566)
... .....++.+...|.+.++.++|.++|.+.... +| +...+|..|+.+|.+.|++++|.++.
T Consensus 394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 394 IQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred HHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 541 22456778888899999999999999888754 34 44568889999999999999999998
Q ss_pred HHHH
Q 042098 539 ALMR 542 (566)
Q Consensus 539 ~~~~ 542 (566)
+.+.
T Consensus 474 ~~~~ 477 (508)
T KOG1840|consen 474 EKVL 477 (508)
T ss_pred HHHH
Confidence 8775
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.6e-09 Score=95.63 Aligned_cols=216 Identities=13% Similarity=0.077 Sum_probs=156.3
Q ss_pred HHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHH
Q 042098 264 MYGKCGALVPARRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340 (566)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 340 (566)
.+.-.|+.-.|..-|+..+.- ++..|--+...|....+.++....|++..+.+.. ++.+|..--....-+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e-- 411 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE-- 411 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH--
Confidence 345567888888888877442 3334777778889999999999999988876432 3344444333333333444
Q ss_pred HHHHHHHHHhCCCCccccCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH
Q 042098 341 KWVDKYASQRGLRHDIFCGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417 (566)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~ 417 (566)
+|..-|+... +.++..|-.+..+..+.+++++++..|++.++. ++.-+..|+
T Consensus 412 ----------------------~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---FP~~~Evy~ 466 (606)
T KOG0547|consen 412 ----------------------EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---FPNCPEVYN 466 (606)
T ss_pred ----------------------HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCchHHH
Confidence 4444444333 336677877888888899999999999999887 666778899
Q ss_pred HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC---------hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHH
Q 042098 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPK---------SEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGA 486 (566)
Q Consensus 418 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~ 486 (566)
.....+...++++.|.+.|+..++. .|+ +.+-.+++-.- -.+++..|++++.+..+- | ....+..
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~L---E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~t 542 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIEL---EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYET 542 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhh---ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHH
Confidence 9999999999999999999988754 444 12222222222 238999999999998753 3 4567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
|...-.+.|+.++|+++|++...+-
T Consensus 543 laq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 543 LAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.1e-12 Score=81.89 Aligned_cols=50 Identities=34% Similarity=0.587 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcC
Q 042098 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232 (566)
Q Consensus 183 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 232 (566)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999998874
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-07 Score=86.82 Aligned_cols=282 Identities=9% Similarity=-0.034 Sum_probs=171.0
Q ss_pred CCCchhHHHHHHHHHHh-CCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHH---HHHHHHHHHcCCHHHHHHH
Q 042098 233 LGDLVLGKWVEGFVVKN-KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW---NAMITAYAQNGLSNEAIML 308 (566)
Q Consensus 233 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~ 308 (566)
.++...+...+-.+... -++-++.....+..++...|+.++|...|++...-|+.+. ....-.+.+.|+.+....+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 34444444444443333 3556777888899999999999999999998755443322 2223345677888888777
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccc----------cCCHHHHHHHHccCC---CCC
Q 042098 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------CGSIDDALKVFEDMP---VTN 375 (566)
Q Consensus 309 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~A~~~~~~~~---~~~ 375 (566)
...+.... .-....|-.-........+++.|..+-+..++.....-.. .++.++|.-.|+... +-+
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r 367 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR 367 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence 77775532 0111112112222334455666666655555543322111 466666666666554 346
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHH-HHHh-hhCcHHHHHHHHHHhHHhcCCCCC-hhHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL-SACV-HAGLVDEGRRLFDLMSSSFGLIPK-SEHY 452 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll-~~~~-~~g~~~~A~~~~~~~~~~~~~~p~-~~~~ 452 (566)
...|.-|+.+|...|++.+|...-+...+. ++-+..+...+. ..|. ...--++|..+++... .+.|+ ....
T Consensus 368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~---~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV 441 (564)
T KOG1174|consen 368 LEIYRGLFHSYLAQKRFKEANALANWTIRL---FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAV 441 (564)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHH---hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHH
Confidence 677777777777777777777766655443 334555555442 2222 2233456777776554 34565 4455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+.+...+...|+.++++.++++.... ||....+.|...+...+.+++|...|..+++.+|.+..+..-+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 66667777777777777777776543 7777777777777777777777777777777777776655554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-11 Score=79.79 Aligned_cols=50 Identities=30% Similarity=0.529 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~ 425 (566)
||+.+||++|.+|++.|++++|.++|++|.+.| ++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g--~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG--IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHcC
Confidence 688889999999999999999999999999998 89999999999988874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-07 Score=91.49 Aligned_cols=393 Identities=15% Similarity=0.084 Sum_probs=259.4
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHH-H
Q 042098 148 IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT-L 223 (566)
Q Consensus 148 ~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~ 223 (566)
..++-|..+|..+.-+..++|+++.+-+.|++... .....|+.+-..|...|.-..|+.+.+.-......|+..+ +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34667888999999999999999999999998775 3556788888999999999999999987755433354444 3
Q ss_pred HHHHHHhcC-CCCchhHHHHHHHHHHhC----CCchHHHHHHHHHHHHhcC-----------CHHHHHHHHhcCCC---C
Q 042098 224 VSVLGSCGD-LGDLVLGKWVEGFVVKNK----MDLNFYMGSALIDMYGKCG-----------ALVPARRVFDAMVN---K 284 (566)
Q Consensus 224 ~~ll~~~~~-~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~---~ 284 (566)
-..-..|.+ .+..+++..+-.+++... -......|..+.-+|...- ...++...+++..+ .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333344543 566777776666666521 1122333444444443321 13455666666633 2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHH-hCCCCccc------
Q 042098 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ-RGLRHDIF------ 357 (566)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~------ 357 (566)
|+...-.+.--|+..++.+.|++..++..+.+-.-+...+..+.-.+...+++..|..+.+.... .|......
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 33333334445777889999999999999886677888888888888889999999988876654 44322111
Q ss_pred ---cCCHHHHHHHHccCC-------------------------------CC-ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 042098 358 ---CGSIDDALKVFEDMP-------------------------------VT-NEVSWNAMISALAFNGRAHEALLLFERM 402 (566)
Q Consensus 358 ---~~~~~~A~~~~~~~~-------------------------------~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m 402 (566)
.++.+++......+. +. .+.++..+.......+ ..+..-.. +
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-c
Confidence 345555544322211 00 1112222211111000 00000000 1
Q ss_pred HhCCCCCCCCH------HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 042098 403 SKEGGAARPND------VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 403 ~~~g~~~~p~~------~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
......-.|+. ..|......+.+.+..++|...+.+... +.|- ...|......+...|.+++|.+.|...
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 11110011232 1233445567788889999888877764 3444 567777778889999999999998876
Q ss_pred CC--CCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 476 PE--KVDEIVLGALLGACQKQKNTDVSQR--VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 476 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.. ..++.+..++...+.+.|+...|.. ++..+++.+|.++.+|..++.++.+.|+.+.|.+-|+...+..-
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 54 3467888999999999999888888 99999999999999999999999999999999999998876543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6e-10 Score=97.78 Aligned_cols=160 Identities=10% Similarity=-0.024 Sum_probs=115.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 042098 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461 (566)
Q Consensus 382 li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 461 (566)
+.+.+-..++.++|.++|+...+.. +.+.....++...|.-.++.+.|..+++++.+- |+. ++..|+.+.-+|.-
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~---~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~y 370 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH---PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLY 370 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC---CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHh
Confidence 3444555566677777777766653 345555566666666667777777777777665 543 45666666666666
Q ss_pred cCCHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHH
Q 042098 462 AGHLSEAWDFVERMPEK---V--DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 462 ~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (566)
.++++-++.-|++.... | -...|-.+.......||+..|.+.|+-++..+|++...++.|+..-.+.|+.++|+.
T Consensus 371 aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence 77777777666665432 2 245677777778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q 042098 537 MRALMREKGV 546 (566)
Q Consensus 537 ~~~~~~~~g~ 546 (566)
+++.+.....
T Consensus 451 ll~~A~s~~P 460 (478)
T KOG1129|consen 451 LLNAAKSVMP 460 (478)
T ss_pred HHHHhhhhCc
Confidence 9988876543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.6e-07 Score=80.94 Aligned_cols=441 Identities=10% Similarity=0.017 Sum_probs=243.3
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042098 90 IRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169 (566)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 169 (566)
+.-+..+ .++..|+.+++.-...+-.-...+---+..++...|++++|...+..+.... .++...+--|.-.+.-.|.
T Consensus 29 Ledfls~-rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSN-RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhc-ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 5555566 7788888887776543322111222223334456788888888877776633 4555555555555555677
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 042098 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249 (566)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 249 (566)
+.+|..+-...++ ++..-..|...-.+.++-++-..+-+.+.+. ..--.++.+..-..-.+.+|..++..++..
T Consensus 107 Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777665543 2222333444445556655555554444321 111122233333333456777777766654
Q ss_pred CCCchHHHHH-HHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 042098 250 KMDLNFYMGS-ALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325 (566)
Q Consensus 250 ~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 325 (566)
..+ -...| .+.-+|.+..-++.+.++++.-.+ | ++.+.|.......+.=.-..|.+-.+++.+.+-.. ..+.
T Consensus 181 n~e--y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--~~f~ 256 (557)
T KOG3785|consen 181 NPE--YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--YPFI 256 (557)
T ss_pred Chh--hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--chhH
Confidence 432 11111 234456666666666666554422 2 23344444443333333333444444444432111 1111
Q ss_pred H-HHH-HHhccCChhHHHHHHHHHHHhCCCCcc-------ccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCC-----
Q 042098 326 G-VLS-ACASIGALDLGKWVDKYASQRGLRHDI-------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR----- 391 (566)
Q Consensus 326 ~-ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~----- 391 (566)
. ++. -+.--..-+.|.+++-.+.+.-..... .++++.+|..+.+.+.+.++.-|-.-.-.++..|+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcH
Confidence 1 110 011112334555555444332211111 17999999999999987666544433333444443
Q ss_pred --hHHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 042098 392 --AHEALLLFERMSKEGGAARPNDV-TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468 (566)
Q Consensus 392 --~~~A~~~~~~m~~~g~~~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 468 (566)
..-|...|+-.-..+ ..-|.. --.++..++.-..++++.+.+++.+..- -...|... -.+..+++..|.+.+|
T Consensus 337 eHlKiAqqffqlVG~Sa--~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn-~N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESA--LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFN-LNLAQAKLATGNYVEA 412 (557)
T ss_pred HHHHHHHHHHHHhcccc--cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhh-hHHHHHHHHhcChHHH
Confidence 344555555443333 222211 1223444555566788888888887753 33333333 3578999999999999
Q ss_pred HHHHHhCCCC--CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhC-CC-CchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 469 WDFVERMPEK--VDEIVLGALL-GACQKQKNTDVSQRVMQLLLEIE-SS-NSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 469 ~~~~~~~~~~--~~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
+++|-.+... .+..+|.+++ ++|.+.+..+.|..++ ++.+ |. ..+....+++.|.+.+.+=-|.+.|+.+..
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 9999988764 4666776655 7888889988887654 4444 32 344556778899999999999999999888
Q ss_pred CCCccC
Q 042098 544 KGVSKT 549 (566)
Q Consensus 544 ~g~~~~ 549 (566)
.++.++
T Consensus 490 lDP~pE 495 (557)
T KOG3785|consen 490 LDPTPE 495 (557)
T ss_pred cCCCcc
Confidence 776553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-09 Score=90.46 Aligned_cols=163 Identities=12% Similarity=0.060 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMV 456 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 456 (566)
+...|.-.|...|+...|..-+++..+.. +-+..++..+...|.+.|..+.|.+.|+...+ +.|+ ..+.|...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG 110 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhh
Confidence 46677888999999999999999999975 34457888899999999999999999999885 4666 67889999
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChH
Q 042098 457 DLYARAGHLSEAWDFVERMPEKVD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (566)
..+|..|++++|.+.|++....|. ..+|..+..+..+.|+.+.|...|++.++.+|+.+.....++......|++-
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 999999999999999999887653 5788889989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 042098 533 DSAKMRALMREKGV 546 (566)
Q Consensus 533 ~A~~~~~~~~~~g~ 546 (566)
.|..+++....++.
T Consensus 191 ~Ar~~~~~~~~~~~ 204 (250)
T COG3063 191 PARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999887765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=9e-09 Score=105.08 Aligned_cols=242 Identities=14% Similarity=0.074 Sum_probs=159.5
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHHHHHHH---------HcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCh
Q 042098 270 ALVPARRVFDAMVN--K-DVVTWNAMITAYA---------QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337 (566)
Q Consensus 270 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 337 (566)
++++|...|++..+ | +...|..+..++. ..+++++|...+++..+.+ +-+...+..+-..+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 34566666666643 2 2233444433332 2234677777777777653 12344555555556666666
Q ss_pred hHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-HHH
Q 042098 338 DLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND-VTF 416 (566)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-~t~ 416 (566)
++|...++...+... .+...+..+...+...|++++|...+++..+.. |+. ..+
T Consensus 355 ~~A~~~~~~Al~l~P---------------------~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~----P~~~~~~ 409 (553)
T PRK12370 355 IVGSLLFKQANLLSP---------------------ISADIKYYYGWNLFMAGQLEEALQTINECLKLD----PTRAAAG 409 (553)
T ss_pred HHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCChhhH
Confidence 666666666655432 256678888889999999999999999998865 543 233
Q ss_pred HHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHH-HHHHHHHHHh
Q 042098 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIV-LGALLGACQK 493 (566)
Q Consensus 417 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-~~~l~~~~~~ 493 (566)
..++..+...|++++|...++++.+. . .|+ +..+..+..+|...|++++|...+.++... |+... .+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566689999999999988764 2 344 556777888899999999999999987654 44333 4445556666
Q ss_pred cCCHHHHHHHHHHHHhhC---CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 494 QKNTDVSQRVMQLLLEIE---SSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
.| +.|...++++.+.. |.++.. +..+|.-.|+-+.+... +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 47888777777653 444443 56677777887777766 7777654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-06 Score=84.75 Aligned_cols=431 Identities=12% Similarity=0.068 Sum_probs=253.0
Q ss_pred hHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 042098 85 AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMY 164 (566)
Q Consensus 85 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 164 (566)
.|-.++..|-. +++...+...+.+.+ +.+-...|.....-.+...|+.++|........+.. .-+.+.|..+.-.+
T Consensus 10 lF~~~lk~yE~--kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 10 LFRRALKCYET--KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHH--HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 34445555533 567777777777766 233344555444444556677777777666555532 22445566555555
Q ss_pred HhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHH
Q 042098 165 ARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241 (566)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 241 (566)
-...++++|++.|..... .|...|.-+--.-.+.|+++.....-.++.+. .+-....|.....+..-.|+...|..
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777776543 35556665555555667777766666666552 12234456666666666777777777
Q ss_pred HHHHHHHhCC-CchHHHHHHH------HHHHHhcCCHHHHHHHHhcCCCC--Chh-HHHHHHHHHHHcCCHHHHHHHHHH
Q 042098 242 VEGFVVKNKM-DLNFYMGSAL------IDMYGKCGALVPARRVFDAMVNK--DVV-TWNAMITAYAQNGLSNEAIMLFNR 311 (566)
Q Consensus 242 ~~~~~~~~~~-~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~ 311 (566)
+.+...+... .|+...+.-. .....+.|.+++|.+.+...... |-. .-..-...+.+.+++++|..++..
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 7777666552 3333333222 23455678888888887766432 222 223345567889999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHh-cc-CChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHc
Q 042098 312 MKYAGVNPDKITLIGVLSACA-SI-GALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389 (566)
Q Consensus 312 m~~~g~~p~~~~~~~ll~~~~-~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 389 (566)
+... .||...|...+..+. +. +..+....++....+.-.... .|-....+. ....
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-----------------~p~Rlplsv----l~~e 301 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE-----------------CPRRLPLSV----LNGE 301 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-----------------cchhccHHH----hCcc
Confidence 9886 577776665554443 22 222222234433333221111 111111111 1112
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHH-HHHHHHHHhHHhcCC----------CCCh--hHHHHHH
Q 042098 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD-EGRRLFDLMSSSFGL----------IPKS--EHYSCMV 456 (566)
Q Consensus 390 ~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~-~A~~~~~~~~~~~~~----------~p~~--~~~~~l~ 456 (566)
.-.+..-.++..+.+.| +++--..+.+|-.-=.+..-.+ -+..+...+... |. +|.. .++..++
T Consensus 302 el~~~vdkyL~~~l~Kg--~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~~~~E~PttllWt~y~la 378 (700)
T KOG1156|consen 302 ELKEIVDKYLRPLLSKG--VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDDGKQEPPTTLLWTLYFLA 378 (700)
T ss_pred hhHHHHHHHHHHHhhcC--CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccc-cCCCcccccccCCchHHHHHHHHHH
Confidence 22344556677777777 5544333333322100000011 111111111111 11 3443 3455677
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHH
Q 042098 457 DLYARAGHLSEAWDFVERMPEK-VDE-IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (566)
..|-+.|+++.|+..++..... |+. ..|-.-.+.+...|+.++|...++++.+++-.|..+-..-+....++.+.++|
T Consensus 379 qh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 379 QHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred HHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHH
Confidence 8888999999999999998865 543 34555568889999999999999999999877776666788889999999999
Q ss_pred HHHHHHHHhCCC
Q 042098 535 AKMRALMREKGV 546 (566)
Q Consensus 535 ~~~~~~~~~~g~ 546 (566)
.++.....+-|.
T Consensus 459 ~~~~skFTr~~~ 470 (700)
T KOG1156|consen 459 EEVLSKFTREGF 470 (700)
T ss_pred HHHHHHhhhccc
Confidence 999988877765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-09 Score=94.21 Aligned_cols=231 Identities=11% Similarity=0.072 Sum_probs=189.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHH-HHHHHhcc
Q 042098 258 GSALIDMYGKCGALVPARRVFDAMV--NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG-VLSACASI 334 (566)
Q Consensus 258 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~ 334 (566)
-+.+..+|.+.|.+.+|.+.|+... .+.+.||-.|-+.|.+..++..|+.++.+-.+. .|..+||.. +...+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3678899999999999999998874 367889999999999999999999999998874 677777654 33445555
Q ss_pred CChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH
Q 042098 335 GALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414 (566)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~ 414 (566)
++.+.+.++++...+.. +.++.+..++...|.-.++++-|+++|+++.+.| + -++.
T Consensus 304 ~~~~~a~~lYk~vlk~~---------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--~-~spe 359 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH---------------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--A-QSPE 359 (478)
T ss_pred HhHHHHHHHHHHHHhcC---------------------CccceeeeeeeeccccCCChHHHHHHHHHHHHhc--C-CChH
Confidence 66666666666655532 2367777788888999999999999999999998 3 5778
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK--SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGA 490 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~ 490 (566)
.|+.+.-+|...++++-++.-|++.... --.|+ ..+|..+.......||+.-|.+.|+-.... .....++.|.-.
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence 8888888999999999999999998875 44565 467888888888999999999999987754 457889999888
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 491 CQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
-.+.|++++|..++..+....|+-.
T Consensus 439 ~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred HhhcCchHHHHHHHHHhhhhCcccc
Confidence 8899999999999999999888743
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-08 Score=95.66 Aligned_cols=217 Identities=12% Similarity=-0.070 Sum_probs=126.3
Q ss_pred hcCCHHHHHHHHhcCCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhH
Q 042098 267 KCGALVPARRVFDAMVNK-------DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339 (566)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 339 (566)
..+..+.++.-+.++... ....|..+...+...|+.++|...|++..+.. +.+...|..+-..+...|+++.
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 345566676666666431 23457777778888888888888888887753 2235566666667777777777
Q ss_pred HHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHH
Q 042098 340 GKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419 (566)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~l 419 (566)
|...++...+... .+..+|..+..++...|++++|.+.+++..+.. |+.......
T Consensus 117 A~~~~~~Al~l~P---------------------~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~----P~~~~~~~~ 171 (296)
T PRK11189 117 AYEAFDSVLELDP---------------------TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD----PNDPYRALW 171 (296)
T ss_pred HHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHH
Confidence 6666666554332 245566677777777777777777777777643 433222222
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH--HHHHHHhCCCC------CCHHHHHHHHHHH
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE--AWDFVERMPEK------VDEIVLGALLGAC 491 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~------~~~~~~~~l~~~~ 491 (566)
...+...++.++|...++..... ..|+... ..+.. ...|+..+ +.+.+.+.... .....|..+...+
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~ 246 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEK--LDKEQWG-WNIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYY 246 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhh--CCccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 22233456677777777654432 2333222 12222 23344332 23222222111 1234566777777
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCC
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
.+.|+.++|...|+++++.+|++
T Consensus 247 ~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 247 LSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCch
Confidence 77777777777777777777644
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-08 Score=90.93 Aligned_cols=132 Identities=16% Similarity=0.142 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSC 454 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 454 (566)
...+..+...+...|++++|...+++...... .......+..+...+...|++++|...+++.... .|+ ...+..
T Consensus 99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~ 174 (234)
T TIGR02521 99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESLLE 174 (234)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHHHH
Confidence 33455566666777777777777777765320 1123345555666677777777777777776653 333 456667
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
+...+...|++++|.+.+++.... .+...+..+...+...|+.+.|..+.+.+....
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 777777777777777777765432 344555566677777777777777777665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.8e-08 Score=83.71 Aligned_cols=414 Identities=13% Similarity=0.078 Sum_probs=215.9
Q ss_pred CCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHH
Q 042098 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLVSWNS 190 (566)
Q Consensus 113 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ 190 (566)
.|+....--|++++..+.+..+++.|.+++..-.+.. +.+....+.|...|.+..++..|-.-++++.. |...-|..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 3444444557777777778888888888877766653 22556667777778888888888888887765 43333332
Q ss_pred -HHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH--hcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Q 042098 191 -MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS--CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267 (566)
Q Consensus 191 -li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 267 (566)
-...+.+.+.+.+|+++...|.+. |+...-..-+.+ .-..+|+..+..+.++....+ +..+.+.......+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 234566778888888888777542 222222222222 234556666666655443211 23333444455566
Q ss_pred cCCHHHHHHHHhcCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhccCC-hh
Q 042098 268 CGALVPARRVFDAMVN----KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI----TLIGVLSACASIGA-LD 338 (566)
Q Consensus 268 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~-~~ 338 (566)
.|+++.|.+-|....+ .....||..+.. .+.|+++.|+++..++.+.|++..+. ..+-.+++ ...|+ ..
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~~ 234 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTLV 234 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchHH
Confidence 7777777777776644 234456555533 35566777777777777777652111 00000000 00000 00
Q ss_pred HHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH
Q 042098 339 LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVT-----NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413 (566)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~ 413 (566)
.+..-+-..........-..++.+.|.+.+..|++. |+.+...+.-. -..+++.+..+-++-+.... +-..
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n---PfP~ 310 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN---PFPP 310 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC---CCCh
Confidence 000000000000000000137778888888888733 44444333211 12345555555555555543 2345
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHhCCCCCCHH--HHHHHHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA-RAGHLSEAWDFVERMPEKVDEI--VLGALLGA 490 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~ 490 (566)
.||..++-.||+..-++.|-.++.+-....-.-.+...|+ |++++. -.-..++|++-++.+....... ....-++.
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe 389 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQE 389 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888888888877754322100011233333 333333 3345666766665543221111 11111222
Q ss_pred HHhcCCH---HHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 491 CQKQKNT---DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 491 ~~~~~~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
-...++- ..|.+-+++.+++. ..+....+++|.+..++..+.++|..-.+
T Consensus 390 ~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 390 ARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 2222221 12223333333332 12455667899999999999999987665
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-07 Score=90.17 Aligned_cols=288 Identities=13% Similarity=0.055 Sum_probs=198.9
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhH-HHHHHHHHHhc---
Q 042098 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLVS-WNSMISGYSKM--- 198 (566)
Q Consensus 125 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~--- 198 (566)
....+...|++++|++.++.-.+. +.............+.+.|+.++|..++..+.. |+-.. |..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 345567889999999999775543 444566778888999999999999999999986 43344 44455554222
Q ss_pred --CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHH
Q 042098 199 --GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL-VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275 (566)
Q Consensus 199 --~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 275 (566)
.+.+...++|+++...- |.......+.-.+.....+ ..+...+......|+++ +++.|-..|....+..-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 25677788999887643 5444443333222222223 34566666777777653 4566667777555555555
Q ss_pred HHHhcCCC------------------CChh--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcc
Q 042098 276 RVFDAMVN------------------KDVV--TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD-KITLIGVLSACASI 334 (566)
Q Consensus 276 ~~~~~~~~------------------~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 334 (566)
+++..... |... ++.-+...|...|++++|++++++..++ .|+ +..|..-...+-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 55555310 1222 3455677888999999999999999987 566 44666667778889
Q ss_pred CChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH
Q 042098 335 GALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414 (566)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~ 414 (566)
|++.+|....+..+..... |-..-+..+..+.+.|++++|.+++......+ ..|...
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~---------------------DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~--~~~~~~ 298 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA---------------------DRYINSKCAKYLLRAGRIEEAEKTASLFTRED--VDPLSN 298 (517)
T ss_pred CCHHHHHHHHHHHHhCChh---------------------hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC--CCcccC
Confidence 8888888887777765443 56666777888999999999999999998776 434332
Q ss_pred H--------HHHHHHHHhhhCcHHHHHHHHHHhHHhc
Q 042098 415 T--------FIGVLSACVHAGLVDEGRRLFDLMSSSF 443 (566)
Q Consensus 415 t--------~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 443 (566)
. ..-...+|.+.|++..|+..|..+.+.+
T Consensus 299 L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 299 LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1 1334567899999999999998887653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-08 Score=104.28 Aligned_cols=234 Identities=9% Similarity=-0.002 Sum_probs=165.2
Q ss_pred ChhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCcccc
Q 042098 285 DVVTWNAMITAYAQ-----NGLSNEAIMLFNRMKYAGVNPDKI-TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC 358 (566)
Q Consensus 285 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 358 (566)
+...|...+.+... .+..++|+.+|++..+. .|+.. .+..+..++...+. .|... ..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~-------------~g~~~--~~ 317 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQ-------------MGIFD--KQ 317 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHH-------------cCCcc--cc
Confidence 44455555554322 23467999999999875 55543 33333332221110 00000 01
Q ss_pred CCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHH
Q 042098 359 GSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435 (566)
Q Consensus 359 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~ 435 (566)
+++++|...+++.. +.+..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS---PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555555443 3467888889899999999999999999999864 33456778888889999999999999
Q ss_pred HHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 436 FDLMSSSFGLIPKS-EHYSCMVDLYARAGHLSEAWDFVERMPEK--VD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 436 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
+++..+. .|+. ..+..++..+...|++++|+..+++.... |+ ...+..+..++...|+.++|...++++....
T Consensus 395 ~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 9999854 6653 33344555677789999999999987543 43 4456667788889999999999999998888
Q ss_pred CCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
|.+......++..|...| ++|...++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 888888888888889888 488888877765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-06 Score=83.80 Aligned_cols=236 Identities=12% Similarity=0.052 Sum_probs=164.6
Q ss_pred CChHHHHHhh------cCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHC-CC--------CCC
Q 042098 54 KPNFLLIRII------DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GL--------KPD 118 (566)
Q Consensus 54 ~~~~~~~~l~------~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-g~--------~p~ 118 (566)
=|..+-.+++ ..|+.+.|.+-+..+. +..+|..|.+.|.+. ++.+-|.-.+..|... |. .|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT-~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKT-RRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhh-ccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 3444555555 7899999998887773 456899999999998 8888888777777542 21 222
Q ss_pred cccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-ChhHHHHHHHHHHh
Q 042098 119 NFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-DLVSWNSMISGYSK 197 (566)
Q Consensus 119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~ 197 (566)
.+=..+.......|.+++|+.+|.+.++. ..|=..|-..|.+++|.++-+.-.+- =..||......+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 33333344456789999999999988764 23445677789999999987765442 22356666666666
Q ss_pred cCChhHHHHHHHHh----------HHCCC---------CCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHH
Q 042098 198 MGYAKEAVELFGRM----------REEEF---------LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258 (566)
Q Consensus 198 ~~~~~~a~~~~~~m----------~~~~~---------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 258 (566)
.++.+.|++.|++- ....+ ..|...|..-....-..|+.+.|..+|+...+ |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 78888888887753 22211 12344455555556677888888888877655 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (566)
-+++...|-.|+.++|-++-++- .|....-.+.+.|-..|++.+|...|.+.+
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 56777888888998888887654 356666778888888888888888887754
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-06 Score=81.70 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGAC 491 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~ 491 (566)
|+-.+...+-..|+++.|..+++.... ..|+ +..|-.=.+.+...|++++|..++++..+- +|...=.--..-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 344455667777777777777777763 3666 456666667777777777777777776542 3332222233444
Q ss_pred HhcCCHHHHHHHHHHHHhhCCC---C---c-hhHH--HHHHHHHhCCChHHHHHHHH
Q 042098 492 QKQKNTDVSQRVMQLLLEIESS---N---S-GNYV--ISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~---~---~-~~~~--~l~~~~~~~g~~~~A~~~~~ 539 (566)
.+.+..++|.++.....+.+-. + . -.|. .-+.+|.+.|++-.|++=+.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 4567777777777766654321 0 0 0111 22556667766666665443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-07 Score=87.92 Aligned_cols=200 Identities=13% Similarity=0.053 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHH
Q 042098 256 YMGSALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD-KITLIGVLSAC 331 (566)
Q Consensus 256 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~ 331 (566)
..|..+...|...|+.++|...|++..+ | +...|+.+...+...|++++|...|++..+. .|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3456666677777888887777777633 2 4567777777888888888888888887764 343 34555566666
Q ss_pred hccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC
Q 042098 332 ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411 (566)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p 411 (566)
...|++++|...++...+.... +. ........+...+++++|...+++.... ..|
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~---------------------~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~---~~~ 197 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPN---------------------DP-YRALWLYLAESKLDPKQAKENLKQRYEK---LDK 197 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC---------------------CH-HHHHHHHHHHccCCHHHHHHHHHHHHhh---CCc
Confidence 6777777777666666553321 22 1111222334567899999999776543 233
Q ss_pred CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCC----CC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHH
Q 042098 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI----PK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVL 484 (566)
Q Consensus 412 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 484 (566)
+...+ .+. ....|+...+ +.++.+.+..... |+ ...|..+...+.+.|++++|+..|++.... |+..-+
T Consensus 198 ~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 198 EQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred cccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 33222 222 2234554443 3445554321111 22 357889999999999999999999998753 354444
Q ss_pred HH
Q 042098 485 GA 486 (566)
Q Consensus 485 ~~ 486 (566)
..
T Consensus 274 ~~ 275 (296)
T PRK11189 274 RY 275 (296)
T ss_pred HH
Confidence 43
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.5e-06 Score=82.47 Aligned_cols=407 Identities=11% Similarity=0.054 Sum_probs=261.9
Q ss_pred CChhHHHHH----HHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 042098 98 QKYSHSLKL----YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173 (566)
Q Consensus 98 ~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A 173 (566)
.+.+++.-. +.++....+..|...|..+.-++...|+++.+-+.|++.....+ -....|..+...|..+|.-..|
T Consensus 298 e~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~A 376 (799)
T KOG4162|consen 298 ENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKA 376 (799)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHH
Confidence 445555433 33333344667889999999999999999999999999876533 3556788888889999999999
Q ss_pred HHHHhccCC----CC-hhHHHHHHHHHH-hcCChhHHHHHHHHhHHC------CCCCCHHHHHHHHHHh--cCCCC----
Q 042098 174 RKVFDEIRE----RD-LVSWNSMISGYS-KMGYAKEAVELFGRMREE------EFLPDEITLVSVLGSC--GDLGD---- 235 (566)
Q Consensus 174 ~~~~~~~~~----~~-~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~------~~~p~~~t~~~ll~~~--~~~~~---- 235 (566)
..++++-.. |+ ...+-..-..|. +.+..++++++-.+.... .+.|-...+..+..+. .....
T Consensus 377 v~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR 456 (799)
T KOG4162|consen 377 VNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSER 456 (799)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHH
Confidence 999987654 22 233333333333 346777777777666541 1333332222222111 11111
Q ss_pred ---chhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC----CCCChhHHHHHHHHHHHcCCHHHHHHH
Q 042098 236 ---LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM----VNKDVVTWNAMITAYAQNGLSNEAIML 308 (566)
Q Consensus 236 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~ 308 (566)
..++.+.+++..+.+.......| .+.--|+..++++.|.+...+. ...+...|..+.-.+...+++.+|+.+
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if-~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIF-YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHH-HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 24566677777776654333322 2444577788999998887775 335788999999999999999999999
Q ss_pred HHHHHHCCCCCC-HhHHHHHHHHHhccCChhHHHHHHHHHHH---------------------hCCCCccccCCHHHHHH
Q 042098 309 FNRMKYAGVNPD-KITLIGVLSACASIGALDLGKWVDKYASQ---------------------RGLRHDIFCGSIDDALK 366 (566)
Q Consensus 309 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---------------------~~~~~~~~~~~~~~A~~ 366 (566)
.+...+. .|+ ..-...-+..-...++.+++......+.. .|.... .++..+|.+
T Consensus 536 vd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la--~~q~~~a~s 611 (799)
T KOG4162|consen 536 VDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLA--LSQPTDAIS 611 (799)
T ss_pred HHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccC--cccccccch
Confidence 9887553 111 11000111111123333333322211111 111000 011111111
Q ss_pred HHcc-----------------CC------CCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH
Q 042098 367 VFED-----------------MP------VTN------EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417 (566)
Q Consensus 367 ~~~~-----------------~~------~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~ 417 (566)
.... ++ .|+ ...|......+.+.+..++|...+.+..+. .+-....|.
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~---~~l~~~~~~ 688 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI---DPLSASVYY 688 (799)
T ss_pred hhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc---chhhHHHHH
Confidence 1111 11 122 224566677888899999999999998775 344556666
Q ss_pred HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHhCCC--CCCHHHHHHHHHHHH
Q 042098 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWD--FVERMPE--KVDEIVLGALLGACQ 492 (566)
Q Consensus 418 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~--~~~~~~~~~l~~~~~ 492 (566)
.....+...|..++|.+.|.... -+.|+ +.+..++..++.+.|+..-|.. ++..+.. ..+...|-.+...+.
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK 765 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 66677888999999999998776 56888 6788999999999998877777 8877764 257889999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCch
Q 042098 493 KQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
+.||.+.|-+.|..+.++++.+|.
T Consensus 766 ~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999876654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.1e-07 Score=84.82 Aligned_cols=281 Identities=13% Similarity=0.006 Sum_probs=168.7
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHH
Q 042098 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262 (566)
Q Consensus 183 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 262 (566)
.++.....-..-+...+++.+..++.+...+. .++....+..-|..+...|+...-..+=..+++.-+. ...+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHH
Confidence 45555666667777788899999988887664 3445555555566667777766666665666665443 455677777
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhH
Q 042098 263 DMYGKCGALVPARRVFDAMVNKD---VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339 (566)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 339 (566)
..|.-.|+.++|++.|.+...-| ...|-.+...|+-.|..++|+..+...-+. -|...-
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hl---------------- 381 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHL---------------- 381 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcc----------------
Confidence 77888899999999998874433 347888888899899999988888766542 111000
Q ss_pred HHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHH
Q 042098 340 GKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419 (566)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~l 419 (566)
| +--+.--|.+.+....|.++|.+...- .+-|+...+-+
T Consensus 382 ----------------------------------P----~LYlgmey~~t~n~kLAe~Ff~~A~ai---~P~Dplv~~El 420 (611)
T KOG1173|consen 382 ----------------------------------P----SLYLGMEYMRTNNLKLAEKFFKQALAI---APSDPLVLHEL 420 (611)
T ss_pred ----------------------------------h----HHHHHHHHHHhccHHHHHHHHHHHHhc---CCCcchhhhhh
Confidence 0 111122344455555666666555542 12233334444
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhc-CCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSF-GLIP----KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQ 492 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 492 (566)
.-.....+.+.+|..+|+.....- .+.+ ...+++.|..+|-+.+.+++|+..+++... +.+..++.++.-.+.
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ 500 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYH 500 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 333444555666666655544210 0011 123455666666666666666666666543 245566666666666
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 042098 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524 (566)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (566)
..|+++.|...|.+++.+.|++..+-..|..+
T Consensus 501 llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 501 LLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 66777777777777776666665555555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-08 Score=90.96 Aligned_cols=224 Identities=12% Similarity=0.083 Sum_probs=135.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHhccCCh
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL-SACASIGAL 337 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~ 337 (566)
..+.+++...|+.+.+..-+..-..|.......+...+...++-+.++.-+++....+..++..++..+. ..+...|+
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~- 117 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGD- 117 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCH-
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCC-
Confidence 4456666777777665555544444555555444433333344445555444443333222222222222 23344444
Q ss_pred hHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH
Q 042098 338 DLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417 (566)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~ 417 (566)
+++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.+ .|. +..
T Consensus 118 -----------------------~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~----eD~-~l~ 167 (290)
T PF04733_consen 118 -----------------------YEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID----EDS-ILT 167 (290)
T ss_dssp -----------------------HHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS----CCH-HHH
T ss_pred -----------------------HHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcH-HHH
Confidence 44444444433 356667777888999999999999999998743 443 444
Q ss_pred HHHHHHhh----hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHH
Q 042098 418 GVLSACVH----AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGAC 491 (566)
Q Consensus 418 ~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~ 491 (566)
.+..++.. .+.+.+|..+|+++... +.+++.+.+.+..+....|++++|.+++++.... .++.+...++.+.
T Consensus 168 qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 168 QLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS 245 (290)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 45554432 23688999999998764 4567888888889999999999999988887654 4556666677777
Q ss_pred HhcCCH-HHHHHHHHHHHhhCCCCc
Q 042098 492 QKQKNT-DVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 492 ~~~~~~-~~A~~~~~~~~~~~p~~~ 515 (566)
...|+. +.+.+.+.++....|.++
T Consensus 246 ~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHhCCChhHHHHHHHHHHHhCCCCh
Confidence 777777 677888888888888865
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.7e-05 Score=77.55 Aligned_cols=243 Identities=8% Similarity=0.024 Sum_probs=149.0
Q ss_pred HHHhcCCCCchHHHHHHHHHHhCCCCChHHHHHhhcCCCchhHHHHhhcCCC--CCcchHHHHHHHHHcCCCChhHHHHH
Q 042098 29 SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR--PNEYAFNVMIRGLTTAWQKYSHSLKL 106 (566)
Q Consensus 29 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~a~~~ 106 (566)
..++.||.+ +.+.-...+.|..||...+-.-+..-+++.+.++...+.+ +....++.+...+... +..+.+..+
T Consensus 489 ~cfAE~Gqf---~KiilY~kKvGyTPdymflLq~l~r~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~-N~iQq~TSF 564 (1666)
T KOG0985|consen 489 QCFAETGQF---KKIILYAKKVGYTPDYMFLLQQLKRSSPDQALQFAMMLVQDEEPLADIEQIVDLFMEL-NLIQQCTSF 564 (1666)
T ss_pred HHHHHhcch---hHHHHHHHHcCCCccHHHHHHHHHccChhHHHHHHHHhhccCCCcccHHHHHHHHHHH-HhhhhhHHH
Confidence 344444444 6677888899999999988888877999999999988864 5566778888888777 778888887
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-CCh
Q 042098 107 YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDL 185 (566)
Q Consensus 107 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~ 185 (566)
+-...+. ..|+....-+-+----..+ |-++-+.+...+. -+..-+..+.+.|.++|-...|++.+..+.. +..
T Consensus 565 LLdaLK~-~~Pd~g~LQTrLLE~NL~~----aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~ 638 (1666)
T KOG0985|consen 565 LLDALKL-NSPDEGHLQTRLLEMNLVH----APQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRV 638 (1666)
T ss_pred HHHHhcC-CChhhhhHHHHHHHHHhcc----chHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHHHhcccHHHHHHH
Confidence 7776654 3555443322221111222 2233333333322 1222366788889999999999988887764 111
Q ss_pred hHHHH-----HHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-----------
Q 042098 186 VSWNS-----MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN----------- 249 (566)
Q Consensus 186 ~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----------- 249 (566)
..... .+-.|...-.++.+++.++.|...++..|..+...+..-|...=..+...++|+.....
T Consensus 639 vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSiv 718 (1666)
T KOG0985|consen 639 VVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIV 718 (1666)
T ss_pred HHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHh
Confidence 11111 12234445567788888888887777777666655555444433333333444332221
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 042098 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281 (566)
Q Consensus 250 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 281 (566)
++.-|..+.-..|.+.++.|++.+.+++.++-
T Consensus 719 n~seDpevh~KYIqAA~kt~QikEvERicres 750 (1666)
T KOG0985|consen 719 NFSEDPEVHFKYIQAACKTGQIKEVERICRES 750 (1666)
T ss_pred ccccCchHHHHHHHHHHhhccHHHHHHHHhcc
Confidence 12233344456788888888888887776654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.4e-06 Score=75.24 Aligned_cols=310 Identities=15% Similarity=0.090 Sum_probs=165.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHH---HHHHhcCChhHHHHHHHHhHHCCCCCCHHHHH-HHHHHhcCCC
Q 042098 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMI---SGYSKMGYAKEAVELFGRMREEEFLPDEITLV-SVLGSCGDLG 234 (566)
Q Consensus 159 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~~ 234 (566)
-+-..+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.-+.+..+ .+||-..-. .-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 4455566678888888888888877777776664 467778888888887777766 566643221 1123445667
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042098 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314 (566)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (566)
.++.|..-|..+++..+.-+. ...++.+.--.++-+. ....+..+...|+...|+..+..+.+
T Consensus 121 ele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 777777777777766543211 1111111111111111 11223344556777777777777776
Q ss_pred CCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHH
Q 042098 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394 (566)
Q Consensus 315 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 394 (566)
-. +-|...+..-..+|...|.+..|..=++...+.. ..++..+-.+-..+...|+.+.
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs---------------------~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS---------------------QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc---------------------ccchHHHHHHHHHHHhhhhHHH
Confidence 41 2244444445556666666665554433333321 2355566666677778888888
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHH-------------HHHhhhCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHH
Q 042098 395 ALLLFERMSKEGGAARPNDVTFIGVL-------------SACVHAGLVDEGRRLFDLMSSSFGLIPK-----SEHYSCMV 456 (566)
Q Consensus 395 A~~~~~~m~~~g~~~~p~~~t~~~ll-------------~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~ 456 (566)
++..+++..+. .||....-..- ......+++.++.+..+...+. .|. ...+..+-
T Consensus 242 sL~~iRECLKl----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 242 SLKEIRECLKL----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLC 314 (504)
T ss_pred HHHHHHHHHcc----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheee
Confidence 88888888774 36653211110 0112233444444444444332 222 12233333
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 457 DLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
.++...|++.+|++...++.+- |+ +.++.--..+|.-...++.|+.-|+.+.+.+++|..
T Consensus 315 ~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 315 TCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred ecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 4444555555555555554432 22 444444444555555555555555555555555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-06 Score=85.96 Aligned_cols=123 Identities=11% Similarity=0.060 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Q 042098 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQ 492 (566)
Q Consensus 416 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~ 492 (566)
+..+...|...|++++|.++++..+.. .|+ +..|..-.+.|-+.|++.+|.+.++....- -|...=+-....+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 344445566666666666666666643 555 556666666666666666666666665542 22222222345555
Q ss_pred hcCCHHHHHHHHHHHHhhC--CCC-------chhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 493 KQKNTDVSQRVMQLLLEIE--SSN-------SGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
+.|+.++|.+.+....+.+ |.. .......+.+|.+.|++..|++-+..+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666666666665543 111 111123466677777777776655544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-07 Score=77.16 Aligned_cols=164 Identities=11% Similarity=0.021 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 455 (566)
..+|..+...|.+.|+.+.|.+.|++..+.. +-+....|....-+|..|++++|.+.|++........--..+|..+
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~ 145 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLA---PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENL 145 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhh
Confidence 3445555555555666666666666555532 2233444555555555556666666665555542222224455555
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (566)
.-+..+.|+++.|.+.|++.... ....+...+.....+.|++..|...+++.....+.+.......+++-.+.|+.+.
T Consensus 146 G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 146 GLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred HHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHH
Confidence 55555666666666665555432 2334444555555555666666666666555555555555555555555666655
Q ss_pred HHHHHHHHH
Q 042098 534 SAKMRALMR 542 (566)
Q Consensus 534 A~~~~~~~~ 542 (566)
+.++=.++.
T Consensus 226 a~~Y~~qL~ 234 (250)
T COG3063 226 AQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHH
Confidence 555544443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-05 Score=76.73 Aligned_cols=167 Identities=11% Similarity=0.084 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-----
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND----VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP----- 447 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p----- 447 (566)
..|..+.+.|-..|+.+.|..+|++..+-. . +.. .+|..-...-.++.+++.|.++.+..... .-.|
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~--y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~y 463 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVP--Y-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYY 463 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCC--c-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhh
Confidence 468888999999999999999999887643 2 222 23333334444567788888888776543 1111
Q ss_pred ------------ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-
Q 042098 448 ------------KSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES- 512 (566)
Q Consensus 448 ------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p- 512 (566)
+...|..+++.--..|-++....+|+++.+- .++...-....-+..+.-++++.+++++-+.+.|
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 1124555566666778888888888888752 3333333344445566778999999999988863
Q ss_pred -CCchhHHHHHHHH---HhCCChHHHHHHHHHHHhCCCcc
Q 042098 513 -SNSGNYVISSKIF---ANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 513 -~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
.-..+|+.....+ ......+.|+.+|+++.+ |..+
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 3334444433332 233578999999999998 5543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=0.00012 Score=80.80 Aligned_cols=370 Identities=11% Similarity=-0.005 Sum_probs=224.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCChhH--HHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCc
Q 042098 159 SLITMYARCGKLDSARKVFDEIRERDLVS--WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL 236 (566)
Q Consensus 159 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 236 (566)
.....+...|++.+|..........+... ...........|+++.+..+++.+.......+..........+...|++
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 33445666677777766665554432211 1122234455677777777776652211111222222333445567888
Q ss_pred hhHHHHHHHHHHhCCC------c--hHHHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCh----hHHHHHHHHHHHcC
Q 042098 237 VLGKWVEGFVVKNKMD------L--NFYMGSALIDMYGKCGALVPARRVFDAMVN----KDV----VTWNAMITAYAQNG 300 (566)
Q Consensus 237 ~~a~~~~~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~ 300 (566)
+++...+......-.. + .......+...+...|++++|...+++..+ .+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 9988888776543111 1 112223344556788999999988887532 221 23455666777899
Q ss_pred CHHHHHHHHHHHHHCCC---CCC--HhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCC--
Q 042098 301 LSNEAIMLFNRMKYAGV---NPD--KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPV-- 373 (566)
Q Consensus 301 ~~~~a~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-- 373 (566)
++++|...+++.....- .+. ..++..+...+...|+++.|...+...... .+....
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~-----------------~~~~~~~~ 568 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL-----------------IEEQHLEQ 568 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------------HHHhcccc
Confidence 99999999988764311 111 123344455677788998888777655442 111100
Q ss_pred -C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh
Q 042098 374 -T-NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN--DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449 (566)
Q Consensus 374 -~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 449 (566)
+ ....+..+...+...|++++|...+++.........+. ..++..+.......|+.+.|.+.++............
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 1 12335556667778899999999998876532001222 3344445666778999999999988875431111111
Q ss_pred hHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------C
Q 042098 450 EHY-----SCMVDLYARAGHLSEAWDFVERMPEK--VDE----IVLGALLGACQKQKNTDVSQRVMQLLLEIE------S 512 (566)
Q Consensus 450 ~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p 512 (566)
..+ ...+..+...|+.+.|.+.+...... ... ..+..+..++...|+.++|...++++.... +
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 111 11224456689999999998776542 111 113456678888999999999999998752 1
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 513 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
....++..++.++.+.|+.++|...+.++.+..
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 223467788899999999999999999887654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.3e-05 Score=76.20 Aligned_cols=158 Identities=14% Similarity=0.224 Sum_probs=115.5
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHH
Q 042098 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438 (566)
Q Consensus 359 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 438 (566)
++++.|.+.-++... ...|..+..+-.+.|...+|++-|-+. -|+..|.-+++.+.+.|.+++-.+++..
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 444444444444433 346889999999999988888776432 3566899999999999999999999976
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 042098 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518 (566)
Q Consensus 439 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (566)
..++ .-.|... +.|+-+|++.++..+.++++. -|+......+..-|...|.++.|.-++.. .+-|
T Consensus 1159 aRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~ 1223 (1666)
T KOG0985|consen 1159 ARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNF 1223 (1666)
T ss_pred HHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhH
Confidence 6655 5555544 578999999999888766553 47777788888888888888877766653 4457
Q ss_pred HHHHHHHHhCCChHHHHHHHHHH
Q 042098 519 VISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
..|+..+...|+|+.|...-+++
T Consensus 1224 a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1224 AKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777788888887776654433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.7e-06 Score=79.01 Aligned_cols=406 Identities=12% Similarity=0.064 Sum_probs=224.5
Q ss_pred HHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCH
Q 042098 92 GLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED-DHVSHSLITMYARCGKL 170 (566)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~ 170 (566)
+.... |+++.|+..|.+..... ++|...|..-..+++..|++++|.+=-.+.++. .|+ ..-|+....++.-.|++
T Consensus 11 aa~s~-~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSS-GDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hhccc-ccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 44566 89999999999888765 337777888888899999998888766666554 444 44677788888888999
Q ss_pred HHHHHHHhccCCC---ChhHHHHHHHHHHhcCChhHHHHHHHH--hHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHH
Q 042098 171 DSARKVFDEIRER---DLVSWNSMISGYSKMGYAKEAVELFGR--MREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245 (566)
Q Consensus 171 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~--m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 245 (566)
++|+..|.+-.+. |...++.+..++... . .+.+.|.. |. .++.-++.|-..+ ....+. .++..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~-~~l~~~p~t~~~~-----~~~~~~---~~l~~ 154 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFH-EKLANLPLTNYSL-----SDPAYV---KILEI 154 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHH-HHhhcChhhhhhh-----ccHHHH---HHHHH
Confidence 9999998877653 455666666666111 0 11111110 00 0111121111111 111111 11111
Q ss_pred HHHhCC-----Cc-hHHHHHHHHHHHHhcCCH-HHHHHH--HhcCCCC------------C----------hhHHHHHHH
Q 042098 246 VVKNKM-----DL-NFYMGSALIDMYGKCGAL-VPARRV--FDAMVNK------------D----------VVTWNAMIT 294 (566)
Q Consensus 246 ~~~~~~-----~~-~~~~~~~li~~~~~~g~~-~~A~~~--~~~~~~~------------~----------~~~~~~li~ 294 (566)
+ +.++ .. +.....++.... ..+.. ..+... ...+..| | ..-...+..
T Consensus 155 ~-~~~p~~l~~~l~d~r~m~a~~~l~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 155 I-QKNPTSLKLYLNDPRLMKADGQLK-GVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred h-hcCcHhhhcccccHHHHHHHHHHh-cCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 1 1110 00 111111110000 00000 000000 0000001 0 112445677
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCC
Q 042098 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVT 374 (566)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 374 (566)
+..+..++..|++-+....+.. -+..-++..-.++...|.............+.|... +.-++.
T Consensus 233 aaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~----------rad~kl---- 296 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL----------RADYKL---- 296 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH----------HHHHHH----
Confidence 7778888999999998887764 333344445556777776666655444444433220 000000
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh-hHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS-EHYS 453 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~ 453 (566)
=...+..+..+|.+.++++.++..|++..... ..|+..+ +....+++....+... -+.|.. .-..
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~--Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r 362 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEH--RTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEER 362 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh--cCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHH
Confidence 01122224446667788899999998877665 4444322 2223344444333322 233432 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
.=...+.+.|++..|+..|.++..+ .|...|..-.-+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 2255667778888888888777654 45667777777788888888888888888888888888888778888888888
Q ss_pred HHHHHHHHHHHhCC
Q 042098 532 DDSAKMRALMREKG 545 (566)
Q Consensus 532 ~~A~~~~~~~~~~g 545 (566)
++|.+.+++..+.+
T Consensus 443 dkAleay~eale~d 456 (539)
T KOG0548|consen 443 DKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888887776655
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-07 Score=89.74 Aligned_cols=231 Identities=19% Similarity=0.147 Sum_probs=173.7
Q ss_pred cccHHHHHHHHHccCChhHHHHHHHHHHHh-----CC-CCchh-HHHHHHHHHHhcCCHHHHHHHHhccCC---------
Q 042098 119 NFTYPFVFISCANLLALNHGVSVHSSVFKI-----GL-DEDDH-VSHSLITMYARCGKLDSARKVFDEIRE--------- 182 (566)
Q Consensus 119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~--------- 182 (566)
..+...+...|...|+++.|..++++.++. |. .|... ..+.+...|...+++++|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456667888999999999999999988775 21 23332 344577788899999999999988763
Q ss_pred -C-ChhHHHHHHHHHHhcCChhHHHHHHHHhHH-----CCC-CCCHH-HHHHHHHHhcCCCCchhHHHHHHHHHHhC---
Q 042098 183 -R-DLVSWNSMISGYSKMGYAKEAVELFGRMRE-----EEF-LPDEI-TLVSVLGSCGDLGDLVLGKWVEGFVVKNK--- 250 (566)
Q Consensus 183 -~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--- 250 (566)
| -..+++.|...|.+.|++++|...+++..+ .|. .|... -++.+...|...+++++|..++....+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 234788888899999999998888776532 122 22322 35677788899999999999998765532
Q ss_pred CCc----hHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 042098 251 MDL----NFYMGSALIDMYGKCGALVPARRVFDAMVNK-----------DVVTWNAMITAYAQNGLSNEAIMLFNRMKY- 314 (566)
Q Consensus 251 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~- 314 (566)
+.+ -..+++.|...|...|++++|.+++++..+. ....++.+...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 222 2358899999999999999999999998331 133678888899999999999999888543
Q ss_pred ---CCC-CC-CHhHHHHHHHHHhccCChhHHHHHHHHHHH
Q 042098 315 ---AGV-NP-DKITLIGVLSACASIGALDLGKWVDKYASQ 349 (566)
Q Consensus 315 ---~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 349 (566)
.|. .| ...+|..|...|...|+++.|..+...+.+
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 232 12 235788899999999999999998877764
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-05 Score=75.04 Aligned_cols=424 Identities=13% Similarity=0.094 Sum_probs=212.2
Q ss_pred HHHHHHHHHhCCCCChHHHHHhh---cCCCchhHHHHhhcCCCCCcchHHH--HHHHHH--cCCCChhHHHHHHHHHHHC
Q 042098 41 QQIHTQMLINFIQKPNFLLIRII---DLKDFNYASLLFHQISRPNEYAFNV--MIRGLT--TAWQKYSHSLKLYYQMKRL 113 (566)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~---~~g~~~~A~~~~~~~~~~~~~~~~~--ll~~~~--~~~~~~~~a~~~~~~m~~~ 113 (566)
.+....+..-+..+...+...++ ..++|++|+.+.+.-... .+++. +=.+|| +. +..++|+..++
T Consensus 32 ~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl-nk~Dealk~~~----- 103 (652)
T KOG2376|consen 32 VKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL-NKLDEALKTLK----- 103 (652)
T ss_pred HHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc-ccHHHHHHHHh-----
Confidence 33344444444333333443333 778888888776654321 11111 223333 45 67777877777
Q ss_pred CCCC-CcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHH
Q 042098 114 GLKP-DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDE-DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191 (566)
Q Consensus 114 g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 191 (566)
|..+ |..+...-...|.+.|++++|..+|+.+.+.+... +...-..++.+- ..-.+. +.+..+.....+|..+
T Consensus 104 ~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~-~~q~v~~v~e~syel~ 178 (652)
T KOG2376|consen 104 GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ-LLQSVPEVPEDSYELL 178 (652)
T ss_pred cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH-HHHhccCCCcchHHHH
Confidence 2223 23355555666777888888888888887765321 111111122111 111111 3334433223333332
Q ss_pred ---HHHHHhcCChhHHHHHHHHhHHCC-------------CCCCHHHH-HHHHHHhcCCCCchhHHHHHHHHHHhCCCch
Q 042098 192 ---ISGYSKMGYAKEAVELFGRMREEE-------------FLPDEITL-VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254 (566)
Q Consensus 192 ---i~~~~~~~~~~~a~~~~~~m~~~~-------------~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (566)
...+...|++.+|+++++...+-+ +.....+. ..+.-.+-..|+-++|..++...++..+...
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 234566788888888887762211 11111111 1233344567777888888777777665422
Q ss_pred H---HHHHHHHHHHHhcCCHH-HHHHHHhcCCCCC--------------hhHHH-HHHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 255 F---YMGSALIDMYGKCGALV-PARRVFDAMVNKD--------------VVTWN-AMITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 255 ~---~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~--------------~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
. ...|.|+.+-....-++ .++..++...... ....| .++..| .+..+.+.++-....
T Consensus 259 ~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp-- 334 (652)
T KOG2376|consen 259 PSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLP-- 334 (652)
T ss_pred hHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCC--
Confidence 1 12233332221111111 1222222221111 11111 122222 122222222222211
Q ss_pred CCCCCHhHHHHHHHHHhccCC--hhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChH
Q 042098 316 GVNPDKITLIGVLSACASIGA--LDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393 (566)
Q Consensus 316 g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 393 (566)
+-.|. ..+..++..+.+... ...+..++....+. -+.....+--.++......|+++
T Consensus 335 ~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--------------------~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 335 GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--------------------HPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--------------------CCchhHHHHHHHHHHHHhcCCHH
Confidence 11222 334444444433211 12222222211111 11123445666778888999999
Q ss_pred HHHHHHH--------HHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCC-CCCh----hHHHHHHHHHH
Q 042098 394 EALLLFE--------RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL-IPKS----EHYSCMVDLYA 460 (566)
Q Consensus 394 ~A~~~~~--------~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~p~~----~~~~~l~~~~~ 460 (566)
.|.+++. .+.+.+ ..|. +...+...+.+.++.+.|..++......+.. .+.. .++.-++..-.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~--~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAK--HLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhc--cChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 9999999 555544 3344 5555666677777766677777666543211 1122 23444445556
Q ss_pred hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042098 461 RAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLL 507 (566)
Q Consensus 461 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 507 (566)
+.|+-++|..+++++.. .+|..+...++.+|++. |.+.|+.+-+.+
T Consensus 470 r~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 88999999999999986 37888888999998886 678887776554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-05 Score=70.97 Aligned_cols=257 Identities=12% Similarity=0.033 Sum_probs=183.1
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHhccCChhHHHHHHHHHHHhC-C--CCccc--
Q 042098 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV-LSACASIGALDLGKWVDKYASQRG-L--RHDIF-- 357 (566)
Q Consensus 284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~-~--~~~~~-- 357 (566)
.|+.....+...+...|+.++|+..|++.+.. .|+..+-.-+ .-.+...|+.+....+...+.... . .+..+
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 47888899999999999999999999988764 4443321111 112355677776666655554432 1 11111
Q ss_pred -----cCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcH
Q 042098 358 -----CGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429 (566)
Q Consensus 358 -----~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~ 429 (566)
..+++.|..+-++.. +.++..|-.-...+...|++++|.-.|+..+..- +-+..+|..|+.+|...|++
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA---PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHhhchH
Confidence 466777777776655 3344455444567888999999999999887742 34678999999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHH-HHHH-hcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 430 DEGRRLFDLMSSSFGLIPKSEHYSCMV-DLYA-RAGHLSEAWDFVERMPE-KVD-EIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 430 ~~A~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
.+|.-.-+...+. +.-+..+...+. ..+. .-..-++|.+++++... +|+ ....+.+...|...|..+.++.+++
T Consensus 385 kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9998888777654 223344444332 2222 22235789999988765 365 3456667788999999999999999
Q ss_pred HHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
+.+...|+ ......|++++...+.+++|...|..+.+.++..
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 99998877 5789999999999999999999999887766543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-07 Score=82.67 Aligned_cols=167 Identities=11% Similarity=0.005 Sum_probs=127.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-h
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND----VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-S 449 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~ 449 (566)
....+..+...+...|++++|...++++.... |+. ..+..+..++...|++++|...++.+.+...-.|. .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 45667778888999999999999999988754 432 45677778889999999999999999876221122 1
Q ss_pred hHHHHHHHHHHhc--------CCHHHHHHHHHhCCCC-CCHH-HH-----------------HHHHHHHHhcCCHHHHHH
Q 042098 450 EHYSCMVDLYARA--------GHLSEAWDFVERMPEK-VDEI-VL-----------------GALLGACQKQKNTDVSQR 502 (566)
Q Consensus 450 ~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~-~~~~-~~-----------------~~l~~~~~~~~~~~~A~~ 502 (566)
..+..+..++... |++++|.+.++++... |+.. .+ ..+...+.+.|+++.|..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 2455555666554 7889999999887653 4322 11 134566788899999999
Q ss_pred HHHHHHhhCCCC---chhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 503 VMQLLLEIESSN---SGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 503 ~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
.++++++..|++ +..+..++.++...|++++|.++++.+....
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999987664 4788999999999999999999999887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.5e-06 Score=80.68 Aligned_cols=214 Identities=13% Similarity=0.148 Sum_probs=132.0
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHH
Q 042098 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345 (566)
Q Consensus 266 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 345 (566)
...|+++.|...|-+.. ..-..+.+-....++.+|+.+++.+++... -...|..+...|++.|+++.|+++|.
T Consensus 717 ~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~ 789 (1636)
T KOG3616|consen 717 EQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFT 789 (1636)
T ss_pred HHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHH
Confidence 34455555555443321 111223445567788888888888877532 34456777788888888887777664
Q ss_pred HHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh
Q 042098 346 YASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425 (566)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~ 425 (566)
. ...++-.|..|.+.|+++.|.++-.+... .......|..-..-.-+
T Consensus 790 e-----------------------------~~~~~dai~my~k~~kw~da~kla~e~~~----~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 790 E-----------------------------ADLFKDAIDMYGKAGKWEDAFKLAEECHG----PEATISLYIAKAEDLDE 836 (1636)
T ss_pred h-----------------------------cchhHHHHHHHhccccHHHHHHHHHHhcC----chhHHHHHHHhHHhHHh
Confidence 3 22366678888888888888888776532 12233444444445667
Q ss_pred hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
.|++.+|.+++-.+ | .|+. -|..|-+.|..++.+++.++.....-..|...+..-+...|++..|+.-|-
T Consensus 837 hgkf~eaeqlyiti----~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 837 HGKFAEAEQLYITI----G-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hcchhhhhheeEEc----c-CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 78888888877433 2 3442 356777888888888887776543334555666666777777777776665
Q ss_pred HHHhhCCCCchhHHHHHHHHHhCCChHHHHHH
Q 042098 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537 (566)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (566)
++-. |...++.|...+.|++|-++
T Consensus 907 ea~d--------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 907 EAGD--------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred hhhh--------HHHHHHHhhhhhhHHHHHHH
Confidence 5432 33344455555555555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-07 Score=86.66 Aligned_cols=242 Identities=11% Similarity=0.075 Sum_probs=159.7
Q ss_pred HHHHhcCCHHHHHHHHhcCC-CC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhH
Q 042098 263 DMYGKCGALVPARRVFDAMV-NK--DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339 (566)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 339 (566)
+-+.-.|++..++.-.+.-. .+ +......+.+++...|+++.++ .++.... .|.......+...+...++.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 34456688888886554111 11 2334555678888899877654 3443333 6666666555544443222222
Q ss_pred HHHHHHHHHHhCCCCccccCCHHHHHHHHccCC----C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH
Q 042098 340 GKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP----V-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414 (566)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~----~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~ 414 (566)
+..-+++.. . .+....-.....+...|++++|+++++.- .+..
T Consensus 85 ------------------------~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------~~lE 132 (290)
T PF04733_consen 85 ------------------------ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------GSLE 132 (290)
T ss_dssp ------------------------HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------TCHH
T ss_pred ------------------------HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------Cccc
Confidence 222222211 1 12222223334566789999999988642 3566
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHHhCCCC--CCHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY----ARAGHLSEAWDFVERMPEK--VDEIVLGALL 488 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~ 488 (566)
.....+..+.+.++++.|.+.++.|.+ ...| .+...+..++ .-.+.+.+|..+|+++.++ +++.+.+.+.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 777788999999999999999999974 3444 3333444443 3344799999999999876 6788888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh-HHHHHHHHHHHhC
Q 042098 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW-DDSAKMRALMREK 544 (566)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 544 (566)
.++...|++++|+++++++++.+|.++.+...++.+....|+. +.+.+++.+++..
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988 7788898888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-07 Score=89.10 Aligned_cols=221 Identities=16% Similarity=0.133 Sum_probs=155.2
Q ss_pred HHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHH
Q 042098 264 MYGKCGALVPARRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340 (566)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 340 (566)
-+.+.|++.+|.-.|+..+.. +...|.-|.......++-..|+..+++..+. .|+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~-------------------- 351 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPT-------------------- 351 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCc--------------------
Confidence 345667777777777776443 3446666666666777777777777766663 343
Q ss_pred HHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC----CC--CCHH
Q 042098 341 KWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA----AR--PNDV 414 (566)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~----~~--p~~~ 414 (566)
|..+.-.|.-.|...|.-..|+..++.-+...++ .. ++..
T Consensus 352 ----------------------------------NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~ 397 (579)
T KOG1125|consen 352 ----------------------------------NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENED 397 (579)
T ss_pred ----------------------------------cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccc
Confidence 3344444455555555555666666655443200 00 0000
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQ 492 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~ 492 (566)
+-.. ..+.......+..++|-++....+..+|+.++..|.-.|--.|.+++|+..|+..... .|...||-|...+.
T Consensus 398 ~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 398 FENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred ccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 0000 1223334455666677677666566688889999999999999999999999988753 46788999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
...+.++|+..|.+++++.|...++.+.|+..|...|.|++|.+.|=.+.
T Consensus 476 N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876664
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.4e-05 Score=74.14 Aligned_cols=302 Identities=12% Similarity=0.004 Sum_probs=153.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHCCC-CCCHHHHH-HHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHH---H
Q 042098 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEF-LPDEITLV-SVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS---A 260 (566)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~ 260 (566)
..|..+...+...|+.+.+...+.+...... .++..... .....+...|+++.+...++...+..+... ..+. .
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-LALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHHHHhHH
Confidence 4566666667777777777666666543221 22222111 112234556777777777777666544322 2222 1
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCh
Q 042098 261 LIDMYGKCGALVPARRVFDAMVNKD---VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337 (566)
Q Consensus 261 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 337 (566)
+.......+..+.+.+.+......+ ......+...+...|++++|...+++..+. .|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~----------------- 146 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPD----------------- 146 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC-----------------
Confidence 1111122344444444444322211 112233334555666666666666666553 222
Q ss_pred hHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH--HH
Q 042098 338 DLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND--VT 415 (566)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~--~t 415 (566)
+...+..+...+...|++++|..++++.....+ ..|+. ..
T Consensus 147 -------------------------------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~-~~~~~~~~~ 188 (355)
T cd05804 147 -------------------------------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD-CSSMLRGHN 188 (355)
T ss_pred -------------------------------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC-CCcchhHHH
Confidence 233455556666667777777777766655421 01222 23
Q ss_pred HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHH-H--HHHHHHHhcCC------HHHHHHHHHhC-CCCCCHHHHH
Q 042098 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY-S--CMVDLYARAGH------LSEAWDFVERM-PEKVDEIVLG 485 (566)
Q Consensus 416 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~------~~~A~~~~~~~-~~~~~~~~~~ 485 (566)
+..+...+...|++++|..++++........+..... + .++..+...|. ++.+....... ..........
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 268 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDL 268 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHH
Confidence 3455566666777777777776654320101111111 1 22222233332 22222211111 1011111112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC-C--------CCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 486 ALLGACQKQKNTDVSQRVMQLLLEIE-S--------SNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
....++...|+.+.|.++++.+.... . .........+.++...|++++|.+.+......+
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45567778888888888888876532 1 124455667788899999999999998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.2e-06 Score=79.99 Aligned_cols=111 Identities=13% Similarity=0.056 Sum_probs=55.2
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDV 499 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 499 (566)
|..|.+.|+++.|.++-++.. |-......|-+-..-+-..|++.+|.++|-.+.. |+. .+..|-+.|..+.
T Consensus 798 i~my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-p~~-----aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-PDK-----AIQMYDKHGLDDD 868 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-chH-----HHHHHHhhCcchH
Confidence 344444444444444433322 2222233343333444444444444444443331 221 2344555555554
Q ss_pred HHHHHHHHHhhCCCC-chhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 500 SQRVMQLLLEIESSN-SGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 500 A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
.+++.++- .|+. ..+...++.-|...|+...|.+-|-+..
T Consensus 869 mirlv~k~---h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 869 MIRLVEKH---HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHHHHHHh---ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 44444332 2332 3467778888999999999988765553
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-06 Score=76.12 Aligned_cols=152 Identities=7% Similarity=0.084 Sum_probs=118.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 042098 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYA 460 (566)
Q Consensus 382 li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 460 (566)
-+..|...|+++.+....+.+.. |. . .+...++.+++...++...+. .| +...|..+...|.
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~------~~-~-------~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~ 84 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD------PL-H-------QFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYL 84 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC------cc-c-------cccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHH
Confidence 34568899999887666543322 21 0 122366777888888777754 44 4788999999999
Q ss_pred hcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHH
Q 042098 461 RAGHLSEAWDFVERMPEK--VDEIVLGALLGAC-QKQKN--TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535 (566)
Q Consensus 461 ~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 535 (566)
..|++++|...|++...- .+...+..+..++ ...|+ .++|.++++++++.+|.++.++..++..+.+.|++++|.
T Consensus 85 ~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 85 WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Confidence 999999999999988652 4667777777764 67677 599999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCC
Q 042098 536 KMRALMREKGVSKTP 550 (566)
Q Consensus 536 ~~~~~~~~~g~~~~~ 550 (566)
..|+++.+.....++
T Consensus 165 ~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 165 ELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhhCCCCcc
Confidence 999999887655443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-05 Score=68.55 Aligned_cols=278 Identities=13% Similarity=0.050 Sum_probs=171.4
Q ss_pred HHHHHhhcCCCchhHHHHhhcCCC--C-CcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHH-HHHHHcc
Q 042098 57 FLLIRIIDLKDFNYASLLFHQISR--P-NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV-FISCANL 132 (566)
Q Consensus 57 ~~~~~l~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~ 132 (566)
.+...+|+..++++|++++..-.+ | +....+.|...|-.. .++..|-+.|+++... .|...-|..- ...+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~-Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRL-QEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 344556788899999999877633 3 556677777788888 8999999999999875 4554444322 3556678
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHH--HHHhcCCHHHHHHHHhccC-CCChhHHHHHHHHHHhcCChhHHHHHHH
Q 042098 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLIT--MYARCGKLDSARKVFDEIR-ERDLVSWNSMISGYSKMGYAKEAVELFG 209 (566)
Q Consensus 133 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (566)
+.+..|+++...|... +....-..-+. .....+|+..+..++++.+ +.+..+.+.......+.|+++.|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 8899999998887542 22211111111 2235688999999999988 4666677766667778999999999999
Q ss_pred HhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCc-------------hHH---------------HHHHH
Q 042098 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-------------NFY---------------MGSAL 261 (566)
Q Consensus 210 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~---------------~~~~l 261 (566)
...+-+--.....|+..+.. .+.++.+.|.....+++++|+.. |+. .+|.-
T Consensus 169 aAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 88664433345667666654 45688999999999988887531 110 11111
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCC
Q 042098 262 IDMYGKCGALVPARRVFDAMVNK-----DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336 (566)
Q Consensus 262 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 336 (566)
...+.+.|+++.|.+.+-+|+.+ |++|...+.-. --.+++.+..+-+.-+.+.+. ....||..++-.||+..-
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHH
Confidence 22344556666666666666432 44444333211 112333333333443433322 234556666666666554
Q ss_pred hhHHHHH
Q 042098 337 LDLGKWV 343 (566)
Q Consensus 337 ~~~a~~~ 343 (566)
++.|-.+
T Consensus 326 f~lAADv 332 (459)
T KOG4340|consen 326 FDLAADV 332 (459)
T ss_pred HhHHHHH
Confidence 4444433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.9e-05 Score=71.85 Aligned_cols=420 Identities=15% Similarity=0.070 Sum_probs=225.3
Q ss_pred HHHhhcCCCchhHHHHhhcC---CCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHccCC
Q 042098 59 LIRIIDLKDFNYASLLFHQI---SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPD-NFTYPFVFISCANLLA 134 (566)
Q Consensus 59 ~~~l~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 134 (566)
.|+.+..|+++.|...|-+. .++|-+.|+--..+|+.. |++++|++=-.+-.+. .|+ +..|.-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~-~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL-GSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHH-hhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 45667889999999999875 356778888888999999 9999998876666654 554 4568888888889999
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHh------ccCC-C------ChhHHHHHHHHHHhcC-
Q 042098 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA-RKVFD------EIRE-R------DLVSWNSMISGYSKMG- 199 (566)
Q Consensus 135 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A-~~~~~------~~~~-~------~~~~~~~li~~~~~~~- 199 (566)
+++|..-|.+-++.. +.+...++-+..++ ..+.+ .+.|. .+.. | ....|..++..+-+.-
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 999999999887753 33455666676666 11111 11111 0000 0 1112333333322210
Q ss_pred ------ChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHhcCCCCch----hHHHHHHHHHH-hCCCchHHHHHHHHHHHHh
Q 042098 200 ------YAKEAVELFGRMREEEFLPDEI-TLVSVLGSCGDLGDLV----LGKWVEGFVVK-NKMDLNFYMGSALIDMYGK 267 (566)
Q Consensus 200 ------~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~----~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~ 267 (566)
+........-.+.. +..... .-..+... ....+. ..........+ .....-..-...+.+..-+
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~--~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKG--VDELLFYASGIEILA--SMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred hhhcccccHHHHHHHHHHhc--CccccccccccccCC--CCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 01111111100000 000000 00000000 000000 00000000000 0000011123456777777
Q ss_pred cCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-------hccCChh
Q 042098 268 CGALVPARRVFDAMVN--KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC-------ASIGALD 338 (566)
Q Consensus 268 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-------~~~g~~~ 338 (566)
..++..|.+.+....+ .+..-++....+|...|.+.++...-....+.|.. ...-|+.+-.++ .+.++.+
T Consensus 237 kk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred hhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 8888888888887644 34445666777888888888887777776665532 222333333333 3334444
Q ss_pred HHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHH-HH
Q 042098 339 LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT-FI 417 (566)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t-~~ 417 (566)
.+...+......-..++ ...+....++++...+...-. .|.... ..
T Consensus 316 ~ai~~~~kaLte~Rt~~-----------------------------~ls~lk~~Ek~~k~~e~~a~~----~pe~A~e~r 362 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPD-----------------------------LLSKLKEAEKALKEAERKAYI----NPEKAEEER 362 (539)
T ss_pred HHHHHHHHHhhhhcCHH-----------------------------HHHHHHHHHHHHHHHHHHHhh----ChhHHHHHH
Confidence 44444443332221111 122233345555544444432 233311 11
Q ss_pred HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc
Q 042098 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQ 494 (566)
Q Consensus 418 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~ 494 (566)
.=...+.+.|++..|+..+.+++.. .|+ ...|....-+|.+.|.+..|++=.+...+. +....|.--..++...
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 1244566677777777777777754 344 567777777777777777777765555432 2233344444555556
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 042098 495 KNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527 (566)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (566)
.+++.|.+.|++.++.+|.+......+.++...
T Consensus 440 k~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 440 KEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 677778888888887777777666666666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.2e-07 Score=73.54 Aligned_cols=104 Identities=8% Similarity=-0.028 Sum_probs=50.7
Q ss_pred HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc
Q 042098 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQ 494 (566)
Q Consensus 418 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~ 494 (566)
.+...+...|++++|...|+..... .|+ ...+..+..++.+.|++++|+..|++...- .+...+..+..++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA---QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3344444555555555555554422 332 344445555555555555555555554431 2344444444555555
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 042098 495 KNTDVSQRVMQLLLEIESSNSGNYVISSKI 524 (566)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (566)
|+.++|...|+++++..|+++..+...+.+
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 555555555555555555555544444333
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00014 Score=72.77 Aligned_cols=198 Identities=15% Similarity=0.160 Sum_probs=114.8
Q ss_pred hHHHHHHHHHhccCChhHHHHHHHHHHHhC--CCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 042098 322 ITLIGVLSACASIGALDLGKWVDKYASQRG--LRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399 (566)
Q Consensus 322 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 399 (566)
..|..--..+...|+.+.|..++......- +.....+|+.++|.++-++-. |..+..-+.+.|-..|++.+|..+|
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 444444455556666666666666665532 222223567777766655433 5556677888888999999999988
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHhh---------------hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 042098 400 ERMSKEGGAARPNDVTFIGVLSACVH---------------AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464 (566)
Q Consensus 400 ~~m~~~g~~~~p~~~t~~~ll~~~~~---------------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 464 (566)
.+... |...|+.|-. ..+.-.|-++|++. |.. ...-+..|-++|.
T Consensus 991 TrAqa-----------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm 1050 (1416)
T KOG3617|consen 991 TRAQA-----------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGM 1050 (1416)
T ss_pred HHHHH-----------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcc
Confidence 87653 2222222221 22333444444433 211 1223456778888
Q ss_pred HHHHHHHHHhCCC-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------------------h
Q 042098 465 LSEAWDFVERMPE-------------KVDEIVLGALLGACQKQKNTDVSQRVMQLLLE---------------------I 510 (566)
Q Consensus 465 ~~~A~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------------~ 510 (566)
+.+|+++--+-.+ ..|+...+--..-++...++++|..++-.+.+ +
T Consensus 1051 ~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~ 1130 (1416)
T KOG3617|consen 1051 IGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAEL 1130 (1416)
T ss_pred hHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHh
Confidence 8887775322111 24555555555666666777777666555442 1
Q ss_pred -CC------C---CchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 511 -ES------S---NSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 511 -~p------~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
-| + -..+...++..+.++|.|..|.+=|.++
T Consensus 1131 mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1131 MTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred cCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 11 1 1245667899999999999998866544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00025 Score=68.86 Aligned_cols=297 Identities=12% Similarity=0.015 Sum_probs=171.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC---CChh---HHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC-HHHHHH--
Q 042098 155 HVSHSLITMYARCGKLDSARKVFDEIRE---RDLV---SWNSMISGYSKMGYAKEAVELFGRMREEEFLPD-EITLVS-- 225 (566)
Q Consensus 155 ~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~-- 225 (566)
..+..+...+...|+.+.+.+.+....+ ++.. ........+...|++++|.+.+++..+. .|+ ...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhH
Confidence 4566666777777888876665555432 2222 2222234566789999999999998775 343 333332
Q ss_pred -HHHHhcCCCCchhHHHHHHHHHHhCCCch-HHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcC
Q 042098 226 -VLGSCGDLGDLVLGKWVEGFVVKNKMDLN-FYMGSALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNG 300 (566)
Q Consensus 226 -ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~ 300 (566)
........+..+.+.+.+.. .....|+ ......+...+...|++++|...+++..+ | +...+..+...+...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 11112224455555555544 1122233 33445667788999999999999999844 3 4567788888999999
Q ss_pred CHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHH
Q 042098 301 LSNEAIMLFNRMKYAGVN-PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSW 379 (566)
Q Consensus 301 ~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 379 (566)
++++|...+++....... |+. ....|
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~-----------------------------------------------------~~~~~ 189 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSML-----------------------------------------------------RGHNW 189 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcch-----------------------------------------------------hHHHH
Confidence 999999999988764211 110 11234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHH-H--HHHHHHhhhCcHHHHHHH--HHHhHHhcCCCCC--hhHH
Q 042098 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF-I--GVLSACVHAGLVDEGRRL--FDLMSSSFGLIPK--SEHY 452 (566)
Q Consensus 380 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~-~--~ll~~~~~~g~~~~A~~~--~~~~~~~~~~~p~--~~~~ 452 (566)
..+...+...|++++|..++++.....+ ..+..... + .++.-+...|..+.+.+. +...... ..... ....
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~ 267 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHIAPSA-ESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFND 267 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcccc-CCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHH
Confidence 5566677788888888888888754320 11222111 1 222223333432222222 1111111 10111 1222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC--C---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPEK--V---D------EIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~---~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
.....++...|+.++|..+++.+... . . ........-++...|+.+.|.+.+..++..
T Consensus 268 ~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 268 LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 24566777888888888888776431 1 1 111122224556789999999999888765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.5e-06 Score=83.91 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=76.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND-VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHY 452 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~ 452 (566)
++..+-.|.....+.|++++|..+++...+. .|+. .....+...+.+.+++++|....++.... .|+ ....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~ 157 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREI 157 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHH
Confidence 3555666666666666666666666666653 3443 33444555566666666666666665543 444 3445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
..+..++...|++++|..+|+++... |+ ...+..+..++...|+.++|...|+++++...+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 55556666666666666666666532 32 455556666666666666666666666665433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.4e-08 Score=56.31 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=20.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 042098 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180 (566)
Q Consensus 149 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 180 (566)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-06 Score=70.90 Aligned_cols=109 Identities=10% Similarity=-0.068 Sum_probs=89.6
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 434 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
.++++..+ +.|+. +..+...+...|++++|...|+..... .+...|..+..++...|++++|...|+++.+.+
T Consensus 14 ~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444443 34543 556778888999999999999987653 577888888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
|.++..+..++.++...|++++|.+.+++..+....
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999998876553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.1e-06 Score=70.27 Aligned_cols=162 Identities=11% Similarity=0.044 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHH-HHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL-SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 457 (566)
|..++-+....|+.+.|..+++++... + |.+.-...|= .-+-..|.+++|+++++.+.++ + +.|..++..=+-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~---f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-d-pt~~v~~KRKlA 128 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR---F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-D-PTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh---C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-C-cchhHHHHHHHH
Confidence 444445555666777777777776665 3 3332222221 1233456777777777777654 2 223455555555
Q ss_pred HHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC---ChH
Q 042098 458 LYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK---MWD 532 (566)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~ 532 (566)
+.-..|+.-+|++-+.+..+. .|...|.-+...|...|+++.|.-.+++++-..|.++..+..+++++...| +++
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 555566666666666655543 567777777777777777777777777777777777777777777766655 455
Q ss_pred HHHHHHHHHHhCCC
Q 042098 533 DSAKMRALMREKGV 546 (566)
Q Consensus 533 ~A~~~~~~~~~~g~ 546 (566)
-|++++.+..+...
T Consensus 209 ~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 209 LARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHhCh
Confidence 66666666665544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-07 Score=55.29 Aligned_cols=32 Identities=31% Similarity=0.692 Sum_probs=19.6
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 042098 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 444 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666655
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00023 Score=78.50 Aligned_cols=333 Identities=11% Similarity=-0.025 Sum_probs=206.7
Q ss_pred HHHhcCCHHHHHHHHhccCC----CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCC------CCCHH--HHHHHHHHh
Q 042098 163 MYARCGKLDSARKVFDEIRE----RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF------LPDEI--TLVSVLGSC 230 (566)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~p~~~--t~~~ll~~~ 230 (566)
.....|+++.+...++.++. .+..........+...|+++++...++.....-- .|... ....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777877777777642 2233333444556678999999999987754211 11111 112223445
Q ss_pred cCCCCchhHHHHHHHHHHhCCCch----HHHHHHHHHHHHhcCCHHHHHHHHhcCCC-------CC--hhHHHHHHHHHH
Q 042098 231 GDLGDLVLGKWVEGFVVKNKMDLN----FYMGSALIDMYGKCGALVPARRVFDAMVN-------KD--VVTWNAMITAYA 297 (566)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~ 297 (566)
...|+++.|...++.........+ ....+.+...+...|++++|...+.+... +. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678999999999998776422222 12445666778889999999999887732 11 124455666788
Q ss_pred HcCCHHHHHHHHHHHHHC----CCC--C-CHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHcc
Q 042098 298 QNGLSNEAIMLFNRMKYA----GVN--P-DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFED 370 (566)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 370 (566)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+....... ..
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-----------------~~ 605 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL-----------------SN 605 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh-----------------hc
Confidence 899999999998886542 221 1 11223333444566688888877665554321 11
Q ss_pred CCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH--HH--HHHHHHHhhhCcHHHHHHHHHHhHHhcCC
Q 042098 371 MPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV--TF--IGVLSACVHAGLVDEGRRLFDLMSSSFGL 445 (566)
Q Consensus 371 ~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~--t~--~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (566)
... .....+..+...+...|++++|.+.+.+............. .. ...+..+...|+.+.|...+...... ..
T Consensus 606 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~ 684 (903)
T PRK04841 606 YQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EF 684 (903)
T ss_pred cCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CC
Confidence 110 11334555677888999999999999887543100111111 10 11223345578999999998765432 11
Q ss_pred CCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 446 IPK---SEHYSCMVDLYARAGHLSEAWDFVERMPEK------V--DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 446 ~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
... ...+..+..++...|++++|...+++.... + ...+...+..++...|+.++|...+.++++....
T Consensus 685 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 685 ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 111 112356777889999999999999887541 1 1235556668889999999999999999987643
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00035 Score=71.53 Aligned_cols=429 Identities=13% Similarity=0.054 Sum_probs=229.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~ 177 (566)
++...|+..|-+..+..+. =...|..|-..|+...+...|.+.|+...+.. ..+..........|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3456666665555544211 23457777777777777778888888776653 334556777788888888888888875
Q ss_pred hccCCCCh-----hHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCC
Q 042098 178 DEIRERDL-----VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252 (566)
Q Consensus 178 ~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (566)
-...+.+. ..|-..--.|...++..+++.-|+...+.. +-|...|..+..+|.+.|.+..|..+|.++....+.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 44443221 123333334556677777777777665532 124556677777777777777777777666554433
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC----------ChhHHHHHHHHHHHcCCH-------HHHHHHHHHHHHC
Q 042098 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNK----------DVVTWNAMITAYAQNGLS-------NEAIMLFNRMKYA 315 (566)
Q Consensus 253 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~-------~~a~~~~~~m~~~ 315 (566)
..-..| -..-..+..|.+.+|...+..+... -..++-.+...+.-.|-. +++++.|.-...+
T Consensus 629 s~y~~f-k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 SKYGRF-KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred hHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 222221 2233445566777776666655220 011121111222222222 2222222222211
Q ss_pred CCCCCHhHHHHHHHH-----------------------HhccCCh---h------------------------HHHHHHH
Q 042098 316 GVNPDKITLIGVLSA-----------------------CASIGAL---D------------------------LGKWVDK 345 (566)
Q Consensus 316 g~~p~~~~~~~ll~~-----------------------~~~~g~~---~------------------------~a~~~~~ 345 (566)
....+...+..+-.+ ....+.. + .+..+++
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 111111111111111 1111111 0 0000011
Q ss_pred HHHHhCCCCccccCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 042098 346 YASQRGLRHDIFCGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422 (566)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~ 422 (566)
.+...+-. ..+...|...+.... ..+...||.|.-. ...|.+.-|...|-+-... .+....+|..+.-.
T Consensus 788 ~f~~l~et----~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s---ep~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 788 YFLLLGET----MKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS---EPTCHCQWLNLGVL 859 (1238)
T ss_pred HHHHcCCc----chhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc---cccchhheecccee
Confidence 01000000 122233444443332 3344455554433 4445555555555544443 23445566666666
Q ss_pred HhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-----CC--CCCHHHHHHHHHHHHhc
Q 042098 423 CVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERM-----PE--KVDEIVLGALLGACQKQ 494 (566)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~~~~~~~~~l~~~~~~~ 494 (566)
+.+..+++.|...|..... +.|+ ...|-.........|+.-++..+|..- .. -++...|.+........
T Consensus 860 ~l~n~d~E~A~~af~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~N 936 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQN 936 (1238)
T ss_pred EEecccHHHhhHHHHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhc
Confidence 7778899999999987763 4554 455555555556778888888887651 11 16666665555555666
Q ss_pred CCHHHHHHHH----------HHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 495 KNTDVSQRVM----------QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 495 ~~~~~A~~~~----------~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
|+.++-+.-. ++.....|++..+|...+....+.+.+++|.++..++
T Consensus 937 g~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 937 GNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 6655544443 4444456999999999999999999999998887665
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.9e-05 Score=72.31 Aligned_cols=174 Identities=18% Similarity=0.136 Sum_probs=114.3
Q ss_pred CCHHHHHHHHccCC------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHH
Q 042098 359 GSIDDALKVFEDMP------VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432 (566)
Q Consensus 359 ~~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A 432 (566)
.++.++...-+.++ .|+...+...+.+......-..+-.++-+-.+.+ -...-|..-+ .+...|++++|
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~aa~YG~A~-~~~~~~~~d~A 325 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG----GLAAQYGRAL-QTYLAGQYDEA 325 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc----chHHHHHHHH-HHHHhcccchH
Confidence 45555555555555 3455556666655444333333333332222211 1223344333 34456888888
Q ss_pred HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 433 RRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 433 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
+..++.+... .|+ +.........+...++.++|.+.++++... |+ ...+-.+..++.+.|+..+|+++++....
T Consensus 326 ~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 326 LKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 8888888764 455 555666778888899999999988888764 65 55566677888888999999999998888
Q ss_pred hCCCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 042098 510 IESSNSGNYVISSKIFANLKMWDDSAKMRAL 540 (566)
Q Consensus 510 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (566)
.+|+++..|..|+.+|...|+..+|....-+
T Consensus 403 ~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 403 NDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred cCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 8899998998888888777666555554433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.3e-05 Score=81.35 Aligned_cols=164 Identities=14% Similarity=0.140 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 457 (566)
.|.+++..-..-|.-+...++|+++.+.- -.-..|..|...|.+.+.+++|.++++.|.++++ -....|..++.
T Consensus 1499 iWiA~lNlEn~yG~eesl~kVFeRAcqyc----d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQYC----DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYAD 1572 (1710)
T ss_pred HHHHHHhHHHhhCcHHHHHHHHHHHHHhc----chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHH
Confidence 46666666556666666667777766542 1233456666667777777777777777776654 34556666677
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHH
Q 042098 458 LYARAGHLSEAWDFVERMPEK-VD---EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533 (566)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (566)
.+.+.++-+.|..++++...- |. .....-.+..-.+.||.+++..+|+..+...|.-...|..+++.-.+.|+.+.
T Consensus 1573 fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~ 1652 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKY 1652 (1710)
T ss_pred HHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHH
Confidence 777777767777766665432 32 23333344555566777777777777777777767777777777777777777
Q ss_pred HHHHHHHHHhCCCc
Q 042098 534 SAKMRALMREKGVS 547 (566)
Q Consensus 534 A~~~~~~~~~~g~~ 547 (566)
++.+|+++...+++
T Consensus 1653 vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1653 VRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHhcCCC
Confidence 77777777666554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00022 Score=61.91 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=86.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh----hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH----AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 383 i~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
+..+.+..+++-|...+++|.+-. +..|.+.|..++.+ .+.+..|.-+|++|.++ ..|+..+.+....+
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~id-----ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~ 216 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQID-----EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc-----hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHH
Confidence 445566777888888888887643 55677767666554 34577888888888753 57777788888888
Q ss_pred HHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCc
Q 042098 459 YARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKN-TDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~ 515 (566)
....|++++|..++++...+ .++.+...++-.-...|. .+--.+.+.++....|.++
T Consensus 217 ~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 88888888888888887764 456666555544444454 3445566666666667654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.1e-05 Score=67.08 Aligned_cols=155 Identities=9% Similarity=0.050 Sum_probs=116.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 042098 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459 (566)
Q Consensus 380 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 459 (566)
..+-..+...|+-+....+....... -+-|.......+......|++..|...+++... .-++|...|+.+.-+|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~---~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaal 144 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA---YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAAL 144 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc---CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHH
Confidence 44556677777777777777765432 123444555577778888888888888888875 3355678888888888
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHH
Q 042098 460 ARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537 (566)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (566)
.+.|++++|..-|.+..+ ..++...+.+...+.-.||.+.|..++.......+.+..+-..|+.+....|++++|+.+
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 145 DQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 888888888888877654 245666777888888888888888888888887777888888888888888888888876
Q ss_pred HH
Q 042098 538 RA 539 (566)
Q Consensus 538 ~~ 539 (566)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 54
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-05 Score=67.14 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 042098 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGAL 487 (566)
Q Consensus 410 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 487 (566)
.|+......+-..+...|+-+....+...... ....+......++....+.|++.+|+..+.+... .+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45443335566677788888888888877653 2233456667799999999999999999999865 4889999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.-+|-+.|+++.|...|.+++++.|.++.+++.++-.|.-.|+++.|..++......+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999998876544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.6e-05 Score=68.44 Aligned_cols=186 Identities=15% Similarity=0.056 Sum_probs=102.4
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccC
Q 042098 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK----ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG 359 (566)
Q Consensus 284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 359 (566)
.....+..+...+.+.|++++|...|+++... .|+. .++..+..++...|+++.|...++.+.+......
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---- 104 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP---- 104 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC----
Confidence 35567777888888999999999999988774 2332 2333334444444444444444444433221100
Q ss_pred CHHHHHHHHccCCCCChhHHHHHHHHHHHc--------CChHHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHhhhCcHH
Q 042098 360 SIDDALKVFEDMPVTNEVSWNAMISALAFN--------GRAHEALLLFERMSKEGGAARPNDV-TFIGVLSACVHAGLVD 430 (566)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~A~~~~~~m~~~g~~~~p~~~-t~~~ll~~~~~~g~~~ 430 (566)
.-..++..+..++... |++++|.+.++++.... |+.. ....+... .. ..
T Consensus 105 --------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~a~~~~-~~---~~ 162 (235)
T TIGR03302 105 --------------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY----PNSEYAPDAKKRM-DY---LR 162 (235)
T ss_pred --------------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC----CCChhHHHHHHHH-HH---HH
Confidence 0011233333333332 34444555555544432 3221 11111000 00 00
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V----DEIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 431 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
. .. ......+...|.+.|++++|+..+++.... | ....+..+..++.+.|++++|...++
T Consensus 163 ~------~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 163 N------RL---------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred H------HH---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0 00 000124566788899999999999887653 3 24678888899999999999999988
Q ss_pred HHHhhCC
Q 042098 506 LLLEIES 512 (566)
Q Consensus 506 ~~~~~~p 512 (566)
.+....|
T Consensus 228 ~l~~~~~ 234 (235)
T TIGR03302 228 VLGANYP 234 (235)
T ss_pred HHHhhCC
Confidence 8877655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.5e-06 Score=68.12 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPE-K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
...+...+...|++++|.+.++.+.. . .+...|..+...+...|+++.|...++++++.+|+++..+..++.+|...|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 33344444445555555555544432 1 233444444455555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHHhC
Q 042098 530 MWDDSAKMRALMREK 544 (566)
Q Consensus 530 ~~~~A~~~~~~~~~~ 544 (566)
++++|.+.++...+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 100 EPESALKALDLAIEI 114 (135)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00029 Score=65.88 Aligned_cols=163 Identities=10% Similarity=-0.008 Sum_probs=103.9
Q ss_pred ChhHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHH
Q 042098 375 NEVSWNAMISALAFNGR--AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 452 (566)
+..+|+-....+.+.|+ .++++.+++++.+.. +-|..+|+.-...+...|+++++++.++++.+. +. -|...|
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d~-~N~sAW 179 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-DV-RNNSAW 179 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-CC-CchhHH
Confidence 33445544444444444 256777777777654 345667777667777777888888888888765 22 234555
Q ss_pred HHHHHHHHhc---CCH----HHHHHHHHhCCC-C-CCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCchhHH
Q 042098 453 SCMVDLYARA---GHL----SEAWDFVERMPE-K-VDEIVLGALLGACQKQ----KNTDVSQRVMQLLLEIESSNSGNYV 519 (566)
Q Consensus 453 ~~l~~~~~~~---g~~----~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (566)
+.....+.+. |.. +++++...++.. . .+...|+.+...+... +...+|.+.+.++...+|.++.++.
T Consensus 180 ~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~ 259 (320)
T PLN02789 180 NQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALS 259 (320)
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHH
Confidence 5555444443 222 355666544433 3 4566777777777663 3456688888888888899999999
Q ss_pred HHHHHHHhCC------------------ChHHHHHHHHHHH
Q 042098 520 ISSKIFANLK------------------MWDDSAKMRALMR 542 (566)
Q Consensus 520 ~l~~~~~~~g------------------~~~~A~~~~~~~~ 542 (566)
.|+++|.... ..++|.++++.+.
T Consensus 260 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 260 DLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 9999998643 3467888887774
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0015 Score=58.93 Aligned_cols=208 Identities=14% Similarity=0.103 Sum_probs=110.3
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHH---HHHHHccCChhHHHHHHHHHHHhCCCCchhH-HHHHHHHH
Q 042098 89 MIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV---FISCANLLALNHGVSVHSSVFKIGLDEDDHV-SHSLITMY 164 (566)
Q Consensus 89 ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~ 164 (566)
+-..+... |++..|+.-|....+- |+..|-.+ ...|...|+-..|+.=++..++. .||-.. -.--...+
T Consensus 44 lGk~lla~-~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 44 LGKELLAR-GQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 44444444 6666666666665543 33333333 23444555555565555555543 344321 11122344
Q ss_pred HhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHH
Q 042098 165 ARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244 (566)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 244 (566)
.+.|.++.|..=|+.+.+.++.. +....+..+.-..++- ......+..+...|+...+.....
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhhHHHHHH
Confidence 55566666665555554322100 0000111111001111 111223344455667777777776
Q ss_pred HHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 042098 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM---VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321 (566)
Q Consensus 245 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 321 (566)
.+++..+ .+...+..-..+|...|++..|+.=++.. ...++.++-.+-..+...|+.+.++..+++..+. .||.
T Consensus 180 ~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdH 256 (504)
T KOG0624|consen 180 HLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDH 256 (504)
T ss_pred HHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccch
Confidence 6666543 36666777778888888888887665554 3346666666777777888888888888887764 5665
Q ss_pred hH
Q 042098 322 IT 323 (566)
Q Consensus 322 ~~ 323 (566)
..
T Consensus 257 K~ 258 (504)
T KOG0624|consen 257 KL 258 (504)
T ss_pred hh
Confidence 43
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.8e-05 Score=73.77 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=68.5
Q ss_pred hcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHH
Q 042098 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAI 306 (566)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 306 (566)
+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+.+..+ .|....-.|...|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 35678888888889888888765 677888888888888888888888888755 25667777778899999999999
Q ss_pred HHHHHHHHC
Q 042098 307 MLFNRMKYA 315 (566)
Q Consensus 307 ~~~~~m~~~ 315 (566)
..++.-...
T Consensus 374 ~~L~~Wi~~ 382 (579)
T KOG1125|consen 374 KMLDKWIRN 382 (579)
T ss_pred HHHHHHHHh
Confidence 999887654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.9e-05 Score=75.66 Aligned_cols=219 Identities=14% Similarity=0.121 Sum_probs=135.2
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042098 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331 (566)
Q Consensus 252 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 331 (566)
+|-...-..+...+...|-...|..+|+++ ..|..+|.+|+..|+..+|..+..+-.+ -+|++..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 344445567788899999999999999875 4577788999999999999999988877 378888888888776
Q ss_pred hccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC
Q 042098 332 ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411 (566)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p 411 (566)
...--++.|.++.+..... +-..+.....+.++++++.+.|+.-.+.. +.
T Consensus 468 ~d~s~yEkawElsn~~sar---------------------------A~r~~~~~~~~~~~fs~~~~hle~sl~~n---pl 517 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR---------------------------AQRSLALLILSNKDFSEADKHLERSLEIN---PL 517 (777)
T ss_pred cChHHHHHHHHHhhhhhHH---------------------------HHHhhccccccchhHHHHHHHHHHHhhcC---cc
Confidence 6665556666555443321 11111111223455666666665554432 22
Q ss_pred CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHH
Q 042098 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALL 488 (566)
Q Consensus 412 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~ 488 (566)
...+|-.+..+..+.++++.|.+.|..... +.|| ...|+.+-.+|.+.|+..+|...+++..+- .+...|...+
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENym 594 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYM 594 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechh
Confidence 334555555555556666666666655552 3454 445666666666666666666666655431 3334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh
Q 042098 489 GACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
-...+.|.+++|.+++.++..+
T Consensus 595 lvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 595 LVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhcccHHHHHHHHHHHHHh
Confidence 5555666666666666666543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.9e-05 Score=66.42 Aligned_cols=222 Identities=10% Similarity=0.046 Sum_probs=137.3
Q ss_pred CCCCChHHHHHhhcCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhH-HHHHHHHHHHCCCCCCcccHHHHHHHH
Q 042098 51 FIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISC 129 (566)
Q Consensus 51 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~-a~~~~~~m~~~g~~p~~~~~~~ll~~~ 129 (566)
+...++.++.+++..|.+.....-...-..|.....-.+-..+... ++-+. --++.+.+...-...+......-...|
T Consensus 40 ~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e-~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~ 118 (299)
T KOG3081|consen 40 DVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELE-SNKKSILASLYELVADSTDGSNLIDLLLAAIIY 118 (299)
T ss_pred hhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCc-chhHHHHHHHHHHHHhhccchhHHHHHHhhHHh
Confidence 4456778888888888776555444443333333333222222223 33333 334555555443343434444445667
Q ss_pred HccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-hhHHHHHHHHHHh----cCChhHH
Q 042098 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD-LVSWNSMISGYSK----MGYAKEA 204 (566)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~~~~~~a 204 (566)
+..+++++|.+...... +......=+..+.+..+++-|.+.++.|.+-| ..+.+.|..++.+ .+.+.+|
T Consensus 119 ~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred hcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhH
Confidence 88899999998876521 22333333455677888999999999998853 4456656665554 4578899
Q ss_pred HHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCC-HHHHHHHHhcC
Q 042098 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA-LVPARRVFDAM 281 (566)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~ 281 (566)
.-+|++|-++ ..|+..+.+....++...|++++|..+++..+..........-| +|-+-...|. .+...+.+.++
T Consensus 193 fyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N-liv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 193 FYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN-LIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH-HHHHHHHhCCChHHHHHHHHHH
Confidence 9999999765 78888888888888888888888888888888776653333333 3333333343 33344445444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0018 Score=66.59 Aligned_cols=265 Identities=14% Similarity=0.036 Sum_probs=134.4
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHH
Q 042098 273 PARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349 (566)
Q Consensus 273 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 349 (566)
.|...+...++ .+...||.|.-. ...|.+.-+...|-+-.... +....+|..+--.+....+++.|...+.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 44555544422 344455555433 33344444444443333221 12333444444445556666666666665554
Q ss_pred hCCCCccc----------cCCHHHHHHHHccCC--------CCChhHHHHHHHHHHHcCChHHHHHHHHH----------
Q 042098 350 RGLRHDIF----------CGSIDDALKVFEDMP--------VTNEVSWNAMISALAFNGRAHEALLLFER---------- 401 (566)
Q Consensus 350 ~~~~~~~~----------~~~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~A~~~~~~---------- 401 (566)
..+..... .|+.-++..+|..-. .++..-|-+.......+|+.++-+...++
T Consensus 879 LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 879 LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 33222111 344444444444311 23333333333344455554443332222
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHH----HHHHHHhcCCHHHHHHHHHhCCC
Q 042098 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC----MVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 402 m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
.... .+-+...|.+.....-+.+.+..|.+...+...-.....+...|+. +.+.++..|.++.|..-+.....
T Consensus 959 yf~~---~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen 959 YFLG---HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred HHhc---CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence 2222 2334455666555566666666666666655433223344455553 34556677888877776666554
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS---GNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 478 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
..+...-..-+.. .-.|+++++.+.|++++.+...+. .....++.+....+.-+.|...+-+...
T Consensus 1036 evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1036 EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 4344333333333 334788889999999888743332 3444555666667777777776655543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.6e-05 Score=67.69 Aligned_cols=127 Identities=10% Similarity=0.099 Sum_probs=101.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH-HhcCC--
Q 042098 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLY-ARAGH-- 464 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~-- 464 (566)
.++.+++...+++..+.+ +.|...|..+...|...|+++.|...+++..+. .|+ ...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL---RGENAELYAALATVLYYQAGQHM 125 (198)
T ss_pred chhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCC
Confidence 566788888888887764 567788888889999999999999999988854 554 67777888764 67777
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 465 LSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 465 ~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
.++|.+++++.... .+...+..+...+.+.|++++|...++++++..|++..-+..+
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 59999999998764 4667778888899999999999999999999988766554433
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.4e-05 Score=62.93 Aligned_cols=128 Identities=15% Similarity=0.177 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC--hhHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK--SEHYSCM 455 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l 455 (566)
.|..++..+ ..++...+...++.+.+..+..+......-.+...+...|++++|...|+.+... ...|+ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 345555554 3667777777777777654101011122333445566677777777777777665 31222 1233345
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQRVMQLL 507 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 507 (566)
...+...|++++|+..++..... .....+.....++...|+.++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 56666666666666666554433 22333444445666666666666666553
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-05 Score=75.33 Aligned_cols=122 Identities=11% Similarity=0.103 Sum_probs=100.1
Q ss_pred HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHh
Q 042098 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQK 493 (566)
Q Consensus 416 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~ 493 (566)
...|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++.... | +...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445566677778899999999988865 354 4445788888888888999988887653 3 55555556677889
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
.++++.|+.+.+++.+..|.+..+|..|+.+|...|+++.|+-.++-+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00039 Score=73.69 Aligned_cols=228 Identities=13% Similarity=0.057 Sum_probs=165.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH---hHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCH
Q 042098 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDK---ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSI 361 (566)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (566)
...|-..|....+.++.++|.++.++.... +++-.. ..|.++++.-...|.-+....+|+++.+..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---------- 1527 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---------- 1527 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc----------
Confidence 346777788888888888888888887653 222221 234445544444454455555555554432
Q ss_pred HHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHH
Q 042098 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441 (566)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 441 (566)
.....|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.+..+
T Consensus 1528 ------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK---F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1528 ------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK---FGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred ------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 12446888999999999999999999999987 556677888999999999999999999998886
Q ss_pred hcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCC
Q 042098 442 SFGLIPK---SEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIE--SSN 514 (566)
Q Consensus 442 ~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~ 514 (566)
. -|. .....-.+..-.+.|+.+++..+|+..... | ....|+.++..-.++|+.+.+..+|++++.+. |..
T Consensus 1593 ~---lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1593 S---LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred h---cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 4 444 344555566667899999999999988764 3 56789999999999999999999999999875 444
Q ss_pred c-hhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 515 S-GNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 515 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
+ ..|..+...-...|+-+.++.+=.++
T Consensus 1670 mKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1670 MKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 3 35666777777777776666554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00039 Score=65.09 Aligned_cols=165 Identities=10% Similarity=0.033 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCc--HHHHHHHHHHhHHhcCCCC-ChhH
Q 042098 376 EVSWNAMISALAFNG-RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL--VDEGRRLFDLMSSSFGLIP-KSEH 451 (566)
Q Consensus 376 ~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~~p-~~~~ 451 (566)
..+|+.--.++...| ++++++..++++.+.. +-+..+|+.-...+.+.|+ .+++..+++.+.+. .| |..+
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~---dpkNy~A 144 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDN---PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL---DAKNYHA 144 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh---CcccHHH
Confidence 344555555555666 5799999999999865 3344556554444555555 36778888888754 44 4678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHhhCCCCchhHHHHH
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQ---KN----TDVSQRVMQLLLEIESSNSGNYVISS 522 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~---~~----~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (566)
|+....++.+.|+++++++.++++.+. .+...|+.....+.+. |. .+.+.....+++..+|.|.++|..+.
T Consensus 145 W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~ 224 (320)
T PLN02789 145 WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLR 224 (320)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 888888889999999999999998763 5667777776665554 22 35788888899999999999999999
Q ss_pred HHHHh----CCChHHHHHHHHHHHhCCC
Q 042098 523 KIFAN----LKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 523 ~~~~~----~g~~~~A~~~~~~~~~~g~ 546 (566)
.++.. .++..+|.+...+..+.++
T Consensus 225 ~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 225 GLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHhcCCcccccchhHHHHHHHhhcccC
Confidence 99988 3456778888877666443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-05 Score=64.94 Aligned_cols=97 Identities=8% Similarity=-0.110 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
......+...+...|++++|.++|+-+.. ..+...|-.|..++...|++++|+..|.++..++|+++.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34455666777889999999999988654 3567778888889999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhCC
Q 042098 527 NLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~g 545 (566)
..|+.+.|++.|+.....-
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887653
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0048 Score=59.30 Aligned_cols=148 Identities=9% Similarity=0.065 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHH
Q 042098 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWD 470 (566)
Q Consensus 392 ~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 470 (566)
.+.....++++...-. +.|+ .+|..+++.-.+..-++.|..+|.++.+. +..+ .+.++++++.-|| .++.+-|.+
T Consensus 347 ~~~~~~~~~~ll~~~~-~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~Afr 422 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIED-IDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFR 422 (656)
T ss_pred hhhhHHHHHHHHhhhc-cCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHH
Confidence 4445555555544320 2222 34555566666666667777777777665 4444 4556666666554 356667777
Q ss_pred HHHhCCCC-CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhh--CC-CCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 471 FVERMPEK-VDEIVL-GALLGACQKQKNTDVSQRVMQLLLEI--ES-SNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 471 ~~~~~~~~-~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
+|+--..+ +|...| ...+.-+...|+...+..+|++++.. .| ....+|..++..-..-|+.+.+.++-+++..
T Consensus 423 IFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 423 IFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 77665543 333333 44555566667777777777777665 11 1345666666666777777777766655543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00027 Score=73.92 Aligned_cols=214 Identities=12% Similarity=0.089 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042098 254 NFYMGSALIDMYGKCGALVPARRVFDAMVN--KD-VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330 (566)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 330 (566)
+...+..|+..+...+++++|.++.+...+ |+ ...|-.+...+.+.++.+++.-+ .+... .+...-+..+-..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHHHHH
Confidence 444666777777777777777777775533 22 22333333355666666655554 22221 2222222222222
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 042098 331 CASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410 (566)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~ 410 (566)
|...|+. ..+..++..+..+|-+.|+.++|..+++++.+.. +
T Consensus 106 ~~~i~~~-----------------------------------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~ 147 (906)
T PRK14720 106 CDKILLY-----------------------------------GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---R 147 (906)
T ss_pred HHHHHhh-----------------------------------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---c
Confidence 2222211 1234578889999999999999999999999975 4
Q ss_pred CCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------------
Q 042098 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE------------- 477 (566)
Q Consensus 411 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------- 477 (566)
-|....|.+.-.|... +.++|.+++.+.... |...+++..+.+++.++..
T Consensus 148 ~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~ 210 (906)
T PRK14720 148 DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIE 210 (906)
T ss_pred ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHH
Confidence 5678888899899888 999999999888764 2333344444444443332
Q ss_pred -----C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 478 -----K----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 478 -----~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
. --..++..+-..|....+++++..+++.+++.+|.|..+..-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1 223445555577888899999999999999999999999999988887
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0084 Score=61.28 Aligned_cols=421 Identities=14% Similarity=0.110 Sum_probs=205.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHH--HccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC--ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~ 175 (566)
+++..|+....++.+. .|+. .|..++.++ .+.|..++|..+++.....+.. |..|...+-..|.+.++.++|..
T Consensus 23 ~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 6677777777776654 2332 344455554 3667777777666666555433 66677777777777777777777
Q ss_pred HHhccCC--CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCC-C---------chhHHHHH
Q 042098 176 VFDEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG-D---------LVLGKWVE 243 (566)
Q Consensus 176 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-~---------~~~a~~~~ 243 (566)
+++...+ |+......+..+|.+.+.+.+-.+.--+|-+ .++-+...|=++++.....- . ...|....
T Consensus 99 ~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 7777665 4444455555566666655443333222222 13333444434443332110 1 12344444
Q ss_pred HHHHHhC-CCchHHHHHHHHHHHHhcCCHHHHHHHHhc-C----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 042098 244 GFVVKNK-MDLNFYMGSALIDMYGKCGALVPARRVFDA-M----VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317 (566)
Q Consensus 244 ~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 317 (566)
+.+.+.+ ..-+..=...-...+...|++++|.+++.. . ..-+...-+.-+..+...+++.+..++-.++...|.
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 5444443 111111112223445567889999888832 2 223444555667777888899998888888888753
Q ss_pred CCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccc----cCCHHHHHHHHccCC-CCChhHHHHHHHHHH---Hc
Q 042098 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----CGSIDDALKVFEDMP-VTNEVSWNAMISALA---FN 389 (566)
Q Consensus 318 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~---~~ 389 (566)
|. |...+.... +.+......|... .+..+...+..++.. ......|-+-+.+.. .-
T Consensus 258 --Dd--y~~~~~sv~------------klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~ 321 (932)
T KOG2053|consen 258 --DD--YKIYTDSVF------------KLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLI 321 (932)
T ss_pred --cc--hHHHHHHHH------------HHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhccc
Confidence 32 333333211 1111110000000 122222222222221 111112333333332 34
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChh-------HHHHHHHHHHhc
Q 042098 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE-------HYSCMVDLYARA 462 (566)
Q Consensus 390 ~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~ 462 (566)
|+.+++...|-+-. | -.| .+..=+..|...=..+.-..++...... .++.. .+...+..-.-.
T Consensus 322 gd~ee~~~~y~~kf--g--~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~ 391 (932)
T KOG2053|consen 322 GDSEEMLSYYFKKF--G--DKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLL 391 (932)
T ss_pred CChHHHHHHHHHHh--C--CCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHh
Confidence 66666555443221 2 112 1111111111111222222222222211 11110 011111111111
Q ss_pred CC-----HHHHHHHH-------HhCCC--C---CCH---------HHHHHHHHHHHhcCCH---HHHHHHHHHHHhhCCC
Q 042098 463 GH-----LSEAWDFV-------ERMPE--K---VDE---------IVLGALLGACQKQKNT---DVSQRVMQLLLEIESS 513 (566)
Q Consensus 463 g~-----~~~A~~~~-------~~~~~--~---~~~---------~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~p~ 513 (566)
|. -+.-..++ +.-.+ + |+. .+.+.|+..+.+.+|. -+|+-+++......|.
T Consensus 392 G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~h 471 (932)
T KOG2053|consen 392 GLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPH 471 (932)
T ss_pred hccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCc
Confidence 11 11111111 11100 0 221 2346677888888875 4667777777788899
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 042098 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549 (566)
Q Consensus 514 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 549 (566)
|..+-..++++|.-.|-+..|.++++.+.-+.|..+
T Consensus 472 nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 472 NFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred cHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 999999999999999999999999988866555543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.6e-05 Score=74.10 Aligned_cols=163 Identities=10% Similarity=0.027 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh----------------------------Cc
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA----------------------------GL 428 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~----------------------------g~ 428 (566)
..|...|.+|+..|+..+|..+..+-.++ +|++..|..+.+..... ++
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~ 500 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKD 500 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchh
Confidence 34666677777777777777776666553 36666666555543333 45
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 429 VDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 429 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
++++.+.|+.-.+ +.|- ..+|-.+.-+..+.++++.|.+.|..... ..+...||.+-.+|.+.++..+|...++
T Consensus 501 fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 501 FSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred HHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 5555555554432 2332 45666677777788888888888877654 2456788999999999999999999999
Q ss_pred HHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
++++.+-.+..+|....-+....|.+++|.+.++++.+...
T Consensus 578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 99888877888888888888888999999998888875443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.7e-05 Score=62.73 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCH----HHHHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDE----IVLGAL 487 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l 487 (566)
..|..++..+ ..++...+...++.+...++-.|- ....-.+...+...|++++|...|+.+... |+. .....+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 478889999999999876222111 234445668889999999999999998875 443 234446
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
...+...|++++|+..++.. ...+..+..+...+++|.+.|++++|+..|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 78899999999999999763 334556778889999999999999999999864
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00083 Score=63.68 Aligned_cols=231 Identities=11% Similarity=0.035 Sum_probs=151.6
Q ss_pred HHHHHhcCCCCchHHHHHHHHH---HhCCCCChHHHHHhhcCCCchhHHHHhhcCCC------CCcchHHHHHHHHHcCC
Q 042098 27 LLSLLKKCPSTKTVQQIHTQML---INFIQKPNFLLIRIIDLKDFNYASLLFHQISR------PNEYAFNVMIRGLTTAW 97 (566)
Q Consensus 27 ~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~ 97 (566)
+..+-++.-++..+...++.+. ..+-.|+.++.++=+-..++.+++..-++++. |+...+...+.+....
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~- 287 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEA- 287 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhcc-
Confidence 3334455556666666666666 55667888887777777888888888888854 3444555555554443
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~ 177 (566)
..-..+-.++.+-.+ ..-...-|...+.. ...|.++.|+..++.+++.- +-|+.........+.+.++.++|.+.+
T Consensus 288 ~~~~~~~~~~~~~~~--~~~~aa~YG~A~~~-~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~ 363 (484)
T COG4783 288 LPNQQAADLLAKRSK--RGGLAAQYGRALQT-YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERL 363 (484)
T ss_pred ccccchHHHHHHHhC--ccchHHHHHHHHHH-HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 222222222222222 11133334444433 46688999999999988762 345566667778888899999999998
Q ss_pred hccCC--CC-hhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCch
Q 042098 178 DEIRE--RD-LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254 (566)
Q Consensus 178 ~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (566)
+.+.. |+ ...+-.+..+|.+.|++.+|+..++..... .+-|...|..+..+|...|+..++...
T Consensus 364 ~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A------------ 430 (484)
T COG4783 364 KKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLA------------ 430 (484)
T ss_pred HHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHH------------
Confidence 88875 43 455666778888899999999888887665 455677787788888877777666543
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 042098 255 FYMGSALIDMYGKCGALVPARRVFDAM 281 (566)
Q Consensus 255 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 281 (566)
....|...|++++|...+...
T Consensus 431 ------~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 431 ------RAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ------HHHHHHhCCCHHHHHHHHHHH
Confidence 344556667777777666655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00065 Score=70.38 Aligned_cols=143 Identities=15% Similarity=0.079 Sum_probs=92.5
Q ss_pred CCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHH
Q 042098 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397 (566)
Q Consensus 318 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 397 (566)
..+...+..|.....+.|..++|..+++.+.+... .+......++..+.+.+++++|+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P---------------------d~~~a~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP---------------------DSSEAFILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC---------------------CcHHHHHHHHHHHHHhccHHHHHH
Confidence 34455666666666666666666666665555332 245566677777777777888887
Q ss_pred HHHHHHhCCCCCCCCH-HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 042098 398 LFERMSKEGGAARPND-VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 398 ~~~~m~~~g~~~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
.+++..... |+. .....+..++.+.|++++|..+|+++... .|+ ..++..+..++...|+.++|...|++.
T Consensus 142 ~~~~~l~~~----p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 142 EIELYFSGG----SSSAREILLEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHhhcC----CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777653 444 44455555667777888888888777753 333 567777777777778888887777776
Q ss_pred CCC--CCHHHHHHHH
Q 042098 476 PEK--VDEIVLGALL 488 (566)
Q Consensus 476 ~~~--~~~~~~~~l~ 488 (566)
.+. |....|+.++
T Consensus 215 ~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 215 LDAIGDGARKLTRRL 229 (694)
T ss_pred HHhhCcchHHHHHHH
Confidence 543 4445544443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.3e-05 Score=60.92 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=84.0
Q ss_pred HHHHHHhCCCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 398 LFERMSKEGGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 398 ~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
.+++.... .|+ ......+...+...|++++|.+.++.+... + +.+...+..+...+.+.|++++|..++++..
T Consensus 5 ~~~~~l~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLGL----DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-D-PYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHcC----ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555553 343 344555666777888888888888887754 1 2346777788888888888888888888775
Q ss_pred CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 042098 477 EK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518 (566)
Q Consensus 477 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (566)
.. .+...+..+...+...|+.+.|...++++++..|++....
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 32 4566777778888889999999999999999888876533
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-06 Score=50.00 Aligned_cols=35 Identities=43% Similarity=0.691 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCH
Q 042098 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220 (566)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 220 (566)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.3e-06 Score=49.49 Aligned_cols=35 Identities=31% Similarity=0.618 Sum_probs=28.0
Q ss_pred chHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCc
Q 042098 84 YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN 119 (566)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 119 (566)
.+||++|.+|++. |++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~-~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKA-GRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCCC
Confidence 3688888888888 8888888888888888888773
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.13 E-value=4e-05 Score=60.85 Aligned_cols=91 Identities=10% Similarity=-0.013 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHH
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPEK-VD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN---SGNYVISSKIF 525 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~ 525 (566)
.++..+.+.|++++|.+.|+.+... |+ ...+..+..++.+.|+++.|...++.+....|.+ +..+..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444444444444444444321 21 1233334444555555555555555555444432 23444445555
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 042098 526 ANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 526 ~~~g~~~~A~~~~~~~~~~ 544 (566)
.+.|++++|.+.++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555555444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.5e-06 Score=61.94 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHhCCCC-C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHH
Q 042098 462 AGHLSEAWDFVERMPEK-V---DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537 (566)
Q Consensus 462 ~g~~~~A~~~~~~~~~~-~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (566)
.|++++|+.+++++... | +...+-.+..++.+.|++++|..++++ .+.+|.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46667777777766543 3 334455567778888888888888877 666676667777778888888888888887
Q ss_pred HHH
Q 042098 538 RAL 540 (566)
Q Consensus 538 ~~~ 540 (566)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.3e-05 Score=56.34 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC-ChHHHHHHHHHHHhC
Q 042098 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK-MWDDSAKMRALMREK 544 (566)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 544 (566)
+...|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788899999999999999999999999999999999999999999999 799999999988764
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.4e-05 Score=58.20 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
+..+...+...|++++|...+++.... | +...+..+...+...++++.|.+.+++.....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888876542 3 34566777788888899999999999999888888888889999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 042098 530 MWDDSAKMRALMREKG 545 (566)
Q Consensus 530 ~~~~A~~~~~~~~~~g 545 (566)
++++|.+.++...+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999988876543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0017 Score=68.14 Aligned_cols=78 Identities=13% Similarity=-0.008 Sum_probs=42.1
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 042098 225 SVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304 (566)
Q Consensus 225 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 304 (566)
.+..+|.+.|+.+++..+++++++.. +-+..+.|.+...|+.. ++++|.+++.+. +..+...+++.+
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~ 187 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVG 187 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchH
Confidence 33344444444444444444444444 22444556666666666 666666665543 223555667777
Q ss_pred HHHHHHHHHHC
Q 042098 305 AIMLFNRMKYA 315 (566)
Q Consensus 305 a~~~~~~m~~~ 315 (566)
+.+++.++...
T Consensus 188 ~~e~W~k~~~~ 198 (906)
T PRK14720 188 IEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHhc
Confidence 77777777664
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.3e-06 Score=48.37 Aligned_cols=33 Identities=27% Similarity=0.572 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCC
Q 042098 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218 (566)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 218 (566)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 588999999999999999999999999888887
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.8e-06 Score=47.73 Aligned_cols=33 Identities=42% Similarity=0.684 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 042098 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319 (566)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 319 (566)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=55.68 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=52.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
+...+...|++++|...|+++++..|.++..+..++.++...|++++|..+++++.+...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788899999999999999999999999999999999999999999999998876544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00016 Score=57.33 Aligned_cols=106 Identities=11% Similarity=0.082 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD----EIVLGALL 488 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~ 488 (566)
++..+...+...|++++|...|+.+.....-.+. ...+..+..++.+.|++++|.+.++.+... |+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455566667777777777777777654111111 235556777777888888888887776542 33 44566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
.++.+.|+.+.|...++++++..|++......
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 78888888888888888888888887655443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00047 Score=61.20 Aligned_cols=108 Identities=14% Similarity=0.025 Sum_probs=75.4
Q ss_pred HHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHH
Q 042098 422 ACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTD 498 (566)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 498 (566)
-+.+.+++.+|+..|.+.+. +.|+ ...|..-.-+|++.|.++.|++-.+....- .-..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 35567778888888877774 4555 555666677788888888888777766542 23566777778888888888
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChH
Q 042098 499 VSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532 (566)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (566)
+|++.|+++++++|++......|-.+-.+.+.-.
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 8888888888888888766666655554444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.018 Score=54.30 Aligned_cols=245 Identities=11% Similarity=0.091 Sum_probs=145.9
Q ss_pred cCCCchhHHHHhhcCCC---CC------cchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH--Hcc
Q 042098 64 DLKDFNYASLLFHQISR---PN------EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC--ANL 132 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~~---~~------~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~ 132 (566)
+.+++.+|.++|.++-+ .+ .+.-+.+|++|..+ +.+.....+....+. .| ...|-.+..++ -+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~--nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN--NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh--hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 88999999999988732 22 22345677787764 577777777776653 23 34455555544 467
Q ss_pred CChhHHHHHHHHHHHh--CCC------------CchhHHHHHHHHHHhcCCHHHHHHHHhccCC--------CChhHHHH
Q 042098 133 LALNHGVSVHSSVFKI--GLD------------EDDHVSHSLITMYARCGKLDSARKVFDEIRE--------RDLVSWNS 190 (566)
Q Consensus 133 ~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~ 190 (566)
+.+++|.+.+..-.+. +.. +|...-+..+..+...|++.++..+++.+.. -+..+||.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8888888888776654 322 2223345677788889999999988888764 37778887
Q ss_pred HHHHHHhc--------CC-------hhHHHHHHHHhHH------CCCCCCHHHHHHHHHHhcCC--CCchhHHHHHHHHH
Q 042098 191 MISGYSKM--------GY-------AKEAVELFGRMRE------EEFLPDEITLVSVLGSCGDL--GDLVLGKWVEGFVV 247 (566)
Q Consensus 191 li~~~~~~--------~~-------~~~a~~~~~~m~~------~~~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~ 247 (566)
++-.+.++ .. ++.++-...+|.. ..+.|....+..++....-. ....--.+++....
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 55444432 11 1222222233321 13456656566666544332 23333444555555
Q ss_pred HhCCCchHH-HHHHHHHHHHhcCCHHHHHHHHhcCC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 248 KNKMDLNFY-MGSALIDMYGKCGALVPARRVFDAMV--------NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 248 ~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
..-+.|+-. +...|+.-+.. +.+++..+.+.+. +.=+.++..++....+.++..+|-+.+.-+.-.
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 555556543 23444444444 4455544444431 123457888888888999999988888877653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.034 Score=57.10 Aligned_cols=207 Identities=12% Similarity=0.044 Sum_probs=128.9
Q ss_pred HHHHHHHhCCCCChHHHHHhh--cCCCchhHHHHhhcCC---CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCC
Q 042098 43 IHTQMLINFIQKPNFLLIRII--DLKDFNYASLLFHQIS---RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP 117 (566)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~--~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p 117 (566)
+-..+.+++-.+...++.+|. +.|+.++|..+++... ..|..+...+-..|.+. ++.++|..+|+...+. -|
T Consensus 32 ~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~-~~~d~~~~~Ye~~~~~--~P 108 (932)
T KOG2053|consen 32 LGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL-GKLDEAVHLYERANQK--YP 108 (932)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhh--CC
Confidence 334445555556666666666 8888899988888763 23566777777788888 8899999999888764 56
Q ss_pred CcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----------CHHHHHHHHhccCCCC--h
Q 042098 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG----------KLDSARKVFDEIRERD--L 185 (566)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~----------~~~~A~~~~~~~~~~~--~ 185 (566)
+..-...+..+|.+.+++.+-.++--++.+. ++-++..+=++++.+...- -..-|.+.++.+.+.+ .
T Consensus 109 ~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~ 187 (932)
T KOG2053|consen 109 SEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKI 187 (932)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCcc
Confidence 6777777778888887776655544444442 3334444445555554331 1234555666555433 1
Q ss_pred ---hHHHHHHHHHHhcCChhHHHHHHH-HhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCc
Q 042098 186 ---VSWNSMISGYSKMGYAKEAVELFG-RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253 (566)
Q Consensus 186 ---~~~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 253 (566)
.-...-...+-..|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++...|.+.
T Consensus 188 ~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 188 ESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 111112233445778888888884 33333233344444556677777788888888888877777653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.001 Score=57.43 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=119.4
Q ss_pred cCChHHHHHHHHHHHhCC-C-CCCCCHHH-HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC
Q 042098 389 NGRAHEALLLFERMSKEG-G-AARPNDVT-FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGH 464 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g-~-~~~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 464 (566)
..+.++..+++.++.... . ...|+..+ |..++-+....|+.+.|...++.+...+ |. ..+-..-.-.+-..|.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhc
Confidence 456888888888876421 0 03355543 5666777788999999999999998763 44 2232222334567899
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 465 LSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 465 ~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
+++|+++++.+.+. .|..++.--+......|+.-+|++-+...++..|.|...|..++.+|...|++++|.--++++.
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999999875 4567777777777778888899999999999999999999999999999999999999999887
Q ss_pred hCC
Q 042098 543 EKG 545 (566)
Q Consensus 543 ~~g 545 (566)
-..
T Consensus 182 l~~ 184 (289)
T KOG3060|consen 182 LIQ 184 (289)
T ss_pred HcC
Confidence 543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00047 Score=65.90 Aligned_cols=121 Identities=18% Similarity=0.113 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchh
Q 042098 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238 (566)
Q Consensus 159 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 238 (566)
.|+..+...++++.|+.+|+++.+.++.....+++.+...++-.+|++++++.... .+-+...+..-...+...++.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHH
Confidence 44555555677777777777777666666666667776667777777777766643 12233333333334444444444
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 042098 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281 (566)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 281 (566)
|..+.+++.+..+. +..+|..|..+|...|+++.|+-.++.+
T Consensus 253 AL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 253 ALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 44444444433221 2223444444444444444444444443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00014 Score=69.81 Aligned_cols=106 Identities=11% Similarity=0.034 Sum_probs=89.5
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKN 496 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 496 (566)
...+...|+++.|+..|++..+. .|+ ...|..+..+|.+.|++++|+..++++... .+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 45567789999999999999865 555 678888899999999999999999998653 467788888899999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 497 TDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
+++|+..|+++++++|.++.....+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998887776664444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00026 Score=63.19 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=90.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 042098 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQ---KNTDVSQRVMQLLLEIESSNSGNYVISS 522 (566)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (566)
|...|-.|..+|.+.|+++.|..-|.+... .++...+..+..++... .+..++..+++++++.+|.|......|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 478899999999999999999999988754 25566666666554433 3578899999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCccCCceeEE
Q 042098 523 KIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555 (566)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 555 (566)
..++..|++.+|...|+.|.+.....+|+.+.+
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 999999999999999999999888777766544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0011 Score=61.16 Aligned_cols=135 Identities=12% Similarity=0.167 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH-HhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA-CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 455 (566)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...+...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 468889999999999999999999998654 2233444444333 333577888999999999863 4467788889
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 456 VDLYARAGHLSEAWDFVERMPEK-VD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
++.+.+.|+.+.|..+|++.... +. ...|...+.--.+.|+.+....+.+++.+..|.+..
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999999998875 43 358999999999999999999999999998777543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=4e-05 Score=53.62 Aligned_cols=55 Identities=11% Similarity=0.209 Sum_probs=46.0
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.+.|++++|.+.|+++...+|++..++..++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678889999999999999999999999999999999999999998887776544
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00036 Score=59.45 Aligned_cols=96 Identities=14% Similarity=0.036 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPEK-VD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (566)
.+..+...+...|++++|...|++.... |+ ...+..+...+.+.|+++.|...++++++..|.+...+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555556666666777776666665431 11 346667777778888888888888888888888888888888888
Q ss_pred HhCCC--------------hHHHHHHHHHHHhCCC
Q 042098 526 ANLKM--------------WDDSAKMRALMREKGV 546 (566)
Q Consensus 526 ~~~g~--------------~~~A~~~~~~~~~~g~ 546 (566)
...|+ +++|.+.+++..+.+.
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 77776 5666677666665543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=3e-05 Score=44.27 Aligned_cols=31 Identities=55% Similarity=0.899 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHCCC
Q 042098 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEF 216 (566)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 216 (566)
.+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888877664
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0021 Score=64.58 Aligned_cols=140 Identities=11% Similarity=0.058 Sum_probs=78.2
Q ss_pred CCChhHHHHHHHHHHHc--C---ChHHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHhhh--------CcHHHHHHHHHH
Q 042098 373 VTNEVSWNAMISALAFN--G---RAHEALLLFERMSKEGGAARPND-VTFIGVLSACVHA--------GLVDEGRRLFDL 438 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~--~---~~~~A~~~~~~m~~~g~~~~p~~-~t~~~ll~~~~~~--------g~~~~A~~~~~~ 438 (566)
+.|..+|...+.+.... + +..+|..+|++..+.. |+- ..+..+..++... .+...+.+..+.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld----P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE----PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 45667777777764432 2 2667888888887754 553 3343333322211 112233333333
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 439 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
.........++..|.++.-.....|++++|...+++... .|+...|..+...+...|+.++|.+.++++.+++|.++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 222101222345566665555566777777777766654 366666666666777777777777777777777766654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00011 Score=52.17 Aligned_cols=60 Identities=10% Similarity=0.150 Sum_probs=53.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
-..+.+.++++.|.+.+++++..+|+++..+...+.++...|++++|.+.+++..+.+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 356788899999999999999999999999999999999999999999999998876653
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.3e-05 Score=43.20 Aligned_cols=31 Identities=19% Similarity=0.564 Sum_probs=22.2
Q ss_pred chHHHHHHHHHcCCCChhHHHHHHHHHHHCCC
Q 042098 84 YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115 (566)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~ 115 (566)
++||.+|++|++. |++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~-~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKM-GQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHcc-chHHHHHHHHHHHhHCcC
Confidence 3677777777777 777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00072 Score=64.90 Aligned_cols=102 Identities=11% Similarity=0.005 Sum_probs=82.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLY 459 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 459 (566)
.....+...|++++|+..|++.++.. +-+...|..+..+|...|++++|+..++++... .|+ ...|..+..+|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHH
Confidence 34566778899999999999999875 345677888888899999999999999999864 564 67888899999
Q ss_pred HhcCCHHHHHHHHHhCCCC-CCHHHHHHHH
Q 042098 460 ARAGHLSEAWDFVERMPEK-VDEIVLGALL 488 (566)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~ 488 (566)
...|++++|+..|++.... |+.......+
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999987653 5555544444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.073 Score=53.12 Aligned_cols=175 Identities=13% Similarity=0.136 Sum_probs=102.9
Q ss_pred CCCcccHHHHHHHHHccCChhHHHHHHHHHHH-hCC--------CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChh
Q 042098 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFK-IGL--------DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186 (566)
Q Consensus 116 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~--------~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 186 (566)
.|.+..|..+.......-.++.|+..|-.... .|+ -.+.....+=+.+| .|++++|++++-++.++|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 57777888777766666666666665533321 111 11222222333333 48999999999999877753
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC----HHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHH
Q 042098 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPD----EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262 (566)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 262 (566)
|..+.+.|++-.+.++++. .|-..| ...++.+...++....++.|.+.|..-... ...+
T Consensus 767 -----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 4566677887776666542 222222 235666666666666677777666543221 3456
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 042098 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310 (566)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 310 (566)
.++.+..++++-+.+.+.+++ |....-.+...+.+.|.-++|.+.+-
T Consensus 830 ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHH
Confidence 666666666666666666654 23344455666666776666665553
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.06 Score=52.15 Aligned_cols=159 Identities=9% Similarity=0.093 Sum_probs=120.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP-NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 454 (566)
..+|...|..-.+......|..+|.+..+.+ ..+ +....++++..+|. ++.+-|.++|+.=.+++|- ++.--..
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~--r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~ 440 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDK--RTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGD--SPEYVLK 440 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCC--ChHHHHH
Confidence 4578888998889999999999999999988 666 66777888887765 8899999999987776442 2344456
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----chhHHHHHHHH
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK-----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN----SGNYVISSKIF 525 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~ 525 (566)
.++-+...++-..|..+|++.... .....|..++.--...||...+.++-++.....|.+ ...-..+.+-|
T Consensus 441 YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY 520 (656)
T KOG1914|consen 441 YLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRY 520 (656)
T ss_pred HHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHH
Confidence 778888999999999999998765 235889999999999999999999999888766622 12333445556
Q ss_pred HhCCChHHHHHHHH
Q 042098 526 ANLKMWDDSAKMRA 539 (566)
Q Consensus 526 ~~~g~~~~A~~~~~ 539 (566)
.-.+.+.--..-++
T Consensus 521 ~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 521 GILDLYPCSLDELK 534 (656)
T ss_pred hhcccccccHHHHH
Confidence 55555544433333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00067 Score=50.74 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHCCC-CCCcccHHHHHHHHHccC--------ChhHHHHHHHHHHHhCCCCchhH
Q 042098 86 FNVMIRGLTTAWQKYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCANLL--------ALNHGVSVHSSVFKIGLDEDDHV 156 (566)
Q Consensus 86 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 156 (566)
-...|..+... +++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+...+.+++.|+..++.|+..+
T Consensus 28 ~i~~I~~~~~~-~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFEN-EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhh-cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 34456677777 999999999999999999 999999999999988653 23456788999999999999999
Q ss_pred HHHHHHHHHh
Q 042098 157 SHSLITMYAR 166 (566)
Q Consensus 157 ~~~li~~~~~ 166 (566)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=49.85 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
+...+.+.|++++|++.|+++... | +...+..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778888888888888888764 4 566777788888899999999999999999888874
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00073 Score=57.33 Aligned_cols=93 Identities=9% Similarity=-0.146 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEK-V----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
...+..+...+...|++++|+..|++.... | ...++..+...+...|+.++|...++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566666777778888888877776421 2 23477888888999999999999999999999988888888888
Q ss_pred HHH-------hCCChHHHHHHHHHH
Q 042098 524 IFA-------NLKMWDDSAKMRALM 541 (566)
Q Consensus 524 ~~~-------~~g~~~~A~~~~~~~ 541 (566)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666655544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0037 Score=62.75 Aligned_cols=136 Identities=11% Similarity=0.010 Sum_probs=101.3
Q ss_pred CCCCHHHHHHHHHHHhhh-----CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHHh
Q 042098 409 ARPNDVTFIGVLSACVHA-----GLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARA--------GHLSEAWDFVER 474 (566)
Q Consensus 409 ~~p~~~t~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 474 (566)
.+.+...|...+++.... ++...|..+|++..+. .|+ ...|..+..++... +++..+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 567788999998885432 3477999999999865 787 44555554444322 123445555554
Q ss_pred CCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 475 MPE----KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 475 ~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
... ..+...+..+.-.....|++++|...++++++++| +...|..++.++...|+.++|...++++.+.+...
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 322 24556777777667778999999999999999999 57899999999999999999999999998876654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.002 Score=54.84 Aligned_cols=130 Identities=14% Similarity=0.133 Sum_probs=86.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN--DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEH 451 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~ 451 (566)
....+..+...+...|++++|...|++..+.. ..+. ...+..+...+.+.|++++|...+++..+. .|+ ...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~ 108 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLE--EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSA 108 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHH
Confidence 44567777777888888888888888887654 2222 356677777788888888888888877753 443 455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCC
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (566)
+..+...|...|+...+..-++... ..+++|.+.++++.+.+|++ |..++..+...|+
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666677777776655553333211 23677888889888888886 5555555555554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00095 Score=49.99 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++..... ...+..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD---PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHH
Confidence 3344455555555555555555555432 122234444444455555555555555544432 11112334444444
Q ss_pred HHhcCCHHHHHHHHHh
Q 042098 459 YARAGHLSEAWDFVER 474 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~ 474 (566)
+...|++++|...+..
T Consensus 78 ~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 78 YYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 4444444444444433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.012 Score=48.52 Aligned_cols=133 Identities=8% Similarity=-0.013 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C---CHHHH
Q 042098 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V---DEIVL 484 (566)
Q Consensus 409 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~ 484 (566)
+.|+...-..|..+....|+..+|...|++...- -+--|....-.+.++....+++..|...++.+.+. | ++.+-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 5577777777888899999999999999888763 33445677788888888999999999988887652 2 23334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
..+.+.+...|....|+..|+.++...|. +......+..+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45668888899999999999999988776 55566677788899988887765544443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00031 Score=62.30 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=80.6
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHH
Q 042098 457 DLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (566)
.-+.+.+++++|+..|.+...- .+.+.|..=..+|.+.|.++.|.+-.+.++.++|.....|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4467889999999999998752 46667777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcc
Q 042098 535 AKMRALMREKGVSK 548 (566)
Q Consensus 535 ~~~~~~~~~~g~~~ 548 (566)
.+.|++..+.....
T Consensus 169 ~~aykKaLeldP~N 182 (304)
T KOG0553|consen 169 IEAYKKALELDPDN 182 (304)
T ss_pred HHHHHhhhccCCCc
Confidence 99998887655443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0008 Score=54.68 Aligned_cols=89 Identities=12% Similarity=0.085 Sum_probs=69.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChH
Q 042098 455 MVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (566)
...-+-..|++++|..+|.-+.. .-+..-|..|..++...++++.|...|..+..++++||.++...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 34445577888888888876543 3456667777777777888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHh
Q 042098 533 DSAKMRALMRE 543 (566)
Q Consensus 533 ~A~~~~~~~~~ 543 (566)
.|++.|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888877765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00034 Score=51.25 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=40.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHH
Q 042098 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSE 467 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 467 (566)
.|+++.|+.+++++.+..+ ..|+...+..+..++.+.|++++|..+++. . ...|+ ......+..++.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-TNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-GTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCC-CChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 4566666666666665430 011233334455666666666666666655 2 12222 2333344566666666666
Q ss_pred HHHHHHh
Q 042098 468 AWDFVER 474 (566)
Q Consensus 468 A~~~~~~ 474 (566)
|++.+++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666553
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.052 Score=50.46 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---CCCHH-HHHHHHHHHhhhCcHHHHHHHHHHhHHh-cCCCCC--h
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAA---RPNDV-TFIGVLSACVHAGLVDEGRRLFDLMSSS-FGLIPK--S 449 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~---~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~p~--~ 449 (566)
..+..+...+.+.|++++|..+|++....-... +.+.. .|...+-.+...||...|.+.+++.... .++..+ .
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 356677888999999999999999987643001 12222 2333344566679999999999988743 122222 3
Q ss_pred hHHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 042098 450 EHYSCMVDLYAR--AGHLSEAWDFVERMP 476 (566)
Q Consensus 450 ~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 476 (566)
.....|+.++-. ...+.+|+.-|+.+.
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 456677777754 346788888888876
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.099 Score=49.02 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
.+..|.-+...|+...|.++-.+.. -|+..-|..-+.+++..+++++-.++... .-.+..|...+.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk------v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK------VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEA 246 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHH
Confidence 4444555556666665555544442 25666666666666666666655554321 1123555666666
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042098 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 503 (566)
+.+.|...+|..++.++.. ..-+..|.+.|++.+|.+.
T Consensus 247 ~~~~~~~~eA~~yI~k~~~-------~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKIPD-------EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHCCCHHHHHHHHHhCCh-------HHHHHHHHHCCCHHHHHHH
Confidence 6666666666666666331 2234455566666666544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.026 Score=50.79 Aligned_cols=157 Identities=9% Similarity=0.055 Sum_probs=104.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-HH---HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPND-VT---FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-~t---~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 456 (566)
.....+...|++++|.+.|+++.... |+. .. .-.+..++.+.++++.|...+++..+.+.-.|+. -|...+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~ 111 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYM 111 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHH
Confidence 34455567889999999999988754 333 22 2345667788899999999999888764444442 222222
Q ss_pred HHHH--hcC---------------C---HHHHHHHHHhCCCC-CCHH------HH------------HHHHHHHHhcCCH
Q 042098 457 DLYA--RAG---------------H---LSEAWDFVERMPEK-VDEI------VL------------GALLGACQKQKNT 497 (566)
Q Consensus 457 ~~~~--~~g---------------~---~~~A~~~~~~~~~~-~~~~------~~------------~~l~~~~~~~~~~ 497 (566)
.+++ ..+ + ..+|++.|+++..+ |+.. .. -.+..-|.+.|.+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 2222 111 2 23555666666543 3211 10 1233568889999
Q ss_pred HHHHHHHHHHHhhCCCC---chhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 498 DVSQRVMQLLLEIESSN---SGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 498 ~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
.-|..-++.+++..|+. +.....+..+|...|..++|.++.+.+.
T Consensus 192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 99999999999988765 4566678899999999999999887654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0013 Score=59.62 Aligned_cols=99 Identities=11% Similarity=0.090 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS----EHYSCMVDLYARAGHLSEAWDFVERMPEK-VD----EIVL 484 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~ 484 (566)
..|...+....+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+... |+ ...+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 34444444445567777777777777655 3432 35556666666666666666666666532 22 2333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
-.+..++...|+.+.|...++++++..|++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 3344555566666666666666666666654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0033 Score=47.13 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHhhhC--------cHHHHHHHHHHhHHhcCCCCC
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAA-RPNDVTFIGVLSACVHAG--------LVDEGRRLFDLMSSSFGLIPK 448 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~p~~~t~~~ll~~~~~~g--------~~~~A~~~~~~~~~~~~~~p~ 448 (566)
+-...|..+...+++.....+|+.+...| + -|+..+|+.++.+.++.. +.-..+.+++.|... +++|+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~--i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~ 103 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNG--ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPN 103 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcC--CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCc
Confidence 34455666677799999999999999999 8 899999999999877642 355678899999988 89999
Q ss_pred hhHHHHHHHHHHh
Q 042098 449 SEHYSCMVDLYAR 461 (566)
Q Consensus 449 ~~~~~~l~~~~~~ 461 (566)
..+|+.++..+.+
T Consensus 104 ~etYnivl~~Llk 116 (120)
T PF08579_consen 104 DETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0028 Score=60.98 Aligned_cols=120 Identities=14% Similarity=0.022 Sum_probs=96.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHh--CCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhH
Q 042098 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN--KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN----KDVVT 288 (566)
Q Consensus 215 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 288 (566)
+.+.+...+..+++.+....+++.+..++...... ....-..+..++|+.|...|..+++..++..=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556777778888888888888888888777665 2222334456899999999999999999888654 78999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 042098 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334 (566)
Q Consensus 289 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 334 (566)
+|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998888778888888888777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.078 Score=53.46 Aligned_cols=302 Identities=13% Similarity=0.053 Sum_probs=173.8
Q ss_pred HHHHhhcCCCchhHHHHhhcCCCCC---cchHHHHHHHHHcCCCC--hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHcc
Q 042098 58 LLIRIIDLKDFNYASLLFHQISRPN---EYAFNVMIRGLTTAWQK--YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL 132 (566)
Q Consensus 58 ~~~~l~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 132 (566)
+.+.++..+.+..|+++-..+.-|. ..+|......+.+. .+ -+++++.+++=.+.-. .+..+|..+.+.....
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~-~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQ-SDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhc-cCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 4455568899999999999887665 56666666666654 22 2233333333222212 3556788888888889
Q ss_pred CChhHHHHHHHHHHHhCCC----CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C--------------hhHHHHHHH
Q 042098 133 LALNHGVSVHSSVFKIGLD----EDDHVSHSLITMYARCGKLDSARKVFDEIRER-D--------------LVSWNSMIS 193 (566)
Q Consensus 133 ~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~--------------~~~~~~li~ 193 (566)
|+.+.|..+++.=...+.+ .+..-+..-+.-....|+.+-...++-.+.+. + ...|..+++
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 9999999887653322211 11222334444555667766666665555431 1 111222221
Q ss_pred --------HHHhcCChhHHHHHHHHh------HHCCCCCCHHHHHHHHHHhcCCCCchhHHH----------HHHHHH-H
Q 042098 194 --------GYSKMGYAKEAVELFGRM------REEEFLPDEITLVSVLGSCGDLGDLVLGKW----------VEGFVV-K 248 (566)
Q Consensus 194 --------~~~~~~~~~~a~~~~~~m------~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~----------~~~~~~-~ 248 (566)
.+...++-..++..|..- ...|..|+.. ...+++++........+ +.+.+. +
T Consensus 601 ~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q 677 (829)
T KOG2280|consen 601 HQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQ 677 (829)
T ss_pred hhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222222222110 0123333333 23344444333211111 111111 1
Q ss_pred hCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042098 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328 (566)
Q Consensus 249 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 328 (566)
.|......+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.++ ++.-|..++
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 22223333345556667788999999999999999999999999999999999998877766553 256677889
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 042098 329 SACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399 (566)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 399 (566)
.+|.+.|+.++|..++..+.. +.-...+|.+.|++.+|.++-
T Consensus 752 e~c~~~~n~~EA~KYiprv~~-----------------------------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGG-----------------------------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhcccHHHHhhhhhccCC-----------------------------hHHHHHHHHHhccHHHHHHHH
Confidence 999999988888876654321 225667788888887776653
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0023 Score=59.19 Aligned_cols=129 Identities=11% Similarity=0.052 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL-YARAGHLSEAWDFVERMPEK--VDEIVLGALLGA 490 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~ 490 (566)
.+|..+++..-+.+..+.|..+|.+..+. -..+..+|...... |...++.+.|.++|+..... .+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888898999999999999999753 22344556555555 33357777799999998764 577888999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 491 CQKQKNTDVSQRVMQLLLEIESSNS---GNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
+.+.|+.+.|..+|++++..-|.+. .+|..+++.-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765543 68999999999999999999999988764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00018 Score=50.27 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=32.6
Q ss_pred hhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHH
Q 042098 425 HAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGA 486 (566)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~ 486 (566)
+.|++++|.++|+.+... .| +...+..+..+|.+.|++++|.++++++... |+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 456666666666666544 33 3445555666666666666666666665543 44444433
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0055 Score=59.02 Aligned_cols=125 Identities=12% Similarity=0.006 Sum_probs=74.8
Q ss_pred CCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHH
Q 042098 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396 (566)
Q Consensus 317 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 396 (566)
.+.+...+..+++.+....+++.+..++-..+....... --..+..++|+.|...|..+.++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~------------------~~~~t~ha~vR~~l~~~~~~~~l 123 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSY------------------LLPSTHHALVRQCLELGAEDELL 123 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccccc------------------ccCccHHHHHHHHHhcCCHHHHH
Confidence 344555666666666666666666555555544322111 01223447777777777777777
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 042098 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462 (566)
Q Consensus 397 ~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 462 (566)
.++..=...| +-||..|++.|++.+.+.|++..|.++...|... +...+..++..-+.++.+.
T Consensus 124 ~~L~n~~~yG--iF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 124 ELLKNRLQYG--IFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhChhhcc--cCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 7777777777 7777777777777777777777777777666655 4444555544444444333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0011 Score=56.26 Aligned_cols=101 Identities=11% Similarity=0.129 Sum_probs=79.0
Q ss_pred hhHHHHhhcC--CCCCcchHHHHHHHHHcC----CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHcc----------
Q 042098 69 NYASLLFHQI--SRPNEYAFNVMIRGLTTA----WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL---------- 132 (566)
Q Consensus 69 ~~A~~~~~~~--~~~~~~~~~~ll~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---------- 132 (566)
.--...|+.. ...|-.+|..++..+.+. .|..+-....+..|.+.|+.-|..+|+.||+.+-+.
T Consensus 31 ~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 31 APHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred cchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHH
Confidence 3345566665 467888899888888753 277888888899999999999999999999888642
Q ss_pred ------CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042098 133 ------LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169 (566)
Q Consensus 133 ------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 169 (566)
.+.+-|.+++++|...|+-||..++..+++.+.+.+.
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2335678888999888988998888888888866543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0056 Score=51.89 Aligned_cols=98 Identities=11% Similarity=0.109 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHH
Q 042098 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP--KSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGAC 491 (566)
Q Consensus 416 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~ 491 (566)
+..+...+...|++++|...|+..... ...+ ...++..+...|...|++++|++.+++.... ....++..+...+
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 344444444455555555555555432 1111 1224555555555555555555555554331 1223333333333
Q ss_pred H-------hcCCHH-------HHHHHHHHHHhhCCCC
Q 042098 492 Q-------KQKNTD-------VSQRVMQLLLEIESSN 514 (566)
Q Consensus 492 ~-------~~~~~~-------~A~~~~~~~~~~~p~~ 514 (566)
. ..|+++ +|...++++...+|++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 3 556655 4455555555666654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0002 Score=41.55 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=30.9
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhCCChHHHHH
Q 042098 504 MQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 504 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (566)
++++++.+|+++..|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999963
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0094 Score=55.47 Aligned_cols=165 Identities=14% Similarity=0.057 Sum_probs=109.8
Q ss_pred CChhHHHHH-HHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH--HhhhCcHHHHHHHHHHhHHhcCCCCChh
Q 042098 374 TNEVSWNAM-ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA--CVHAGLVDEGRRLFDLMSSSFGLIPKSE 450 (566)
Q Consensus 374 ~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 450 (566)
|....|..+ ..++.-.|++++|...--...+.. + ...+..++++ +...++.+.|...|++.. .+.|+..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld----~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~ 237 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD----A-TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQ 237 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc----c-chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhh
Confidence 333444444 345566788888887766666543 1 1233334443 334677888888887766 3456532
Q ss_pred HH---HHH----------HHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 451 HY---SCM----------VDLYARAGHLSEAWDFVERMPE------KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 451 ~~---~~l----------~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
.- ... .+-..+.|++.+|.+.|.+... +|+...|.....+..+.|+.++|+.--++++.++
T Consensus 238 ~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 238 KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID 317 (486)
T ss_pred hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence 11 111 1334577888888888887764 2556666666677778888888888888888888
Q ss_pred CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
|.-...|..-++++...++|++|.+.+++..+..-
T Consensus 318 ~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 318 SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88888888888888888888888888887765433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0035 Score=48.93 Aligned_cols=52 Identities=15% Similarity=0.055 Sum_probs=24.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHhCCChHHHHHHH
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIESS---NSGNYVISSKIFANLKMWDDSAKMR 538 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (566)
+.+++...|+.++|..++++.....|+ +......++-++...|+.++|.+.+
T Consensus 44 lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 44 LASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344455555555555555555444444 3333344444455555555555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.044 Score=42.44 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=92.3
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 042098 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465 (566)
Q Consensus 386 ~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (566)
+.-.|..++..+++.+..... +..-+|-++--....-+-+-..++++.+-+-|.+.|- .-...++.+|+..|.
T Consensus 12 ~ildG~V~qGveii~k~v~Ss-----ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS-----NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS------HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCcC-----CccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc-
Confidence 445788889999999887643 4555666665555556666667777766554333321 123445566665554
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 466 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
+....+..+......|+.+.-.+++..+.+.+..+|.....++.+|.+.|+..++.+++.++.+.|
T Consensus 85 --------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 --------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred --------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344556677888999999999999999987777789999999999999999999999999999999
Q ss_pred Cc
Q 042098 546 VS 547 (566)
Q Consensus 546 ~~ 547 (566)
+.
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 75
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0087 Score=48.56 Aligned_cols=91 Identities=9% Similarity=-0.025 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCM 455 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 455 (566)
..-.+...+...|++++|.++|+-+.... |. ..-|-.|...|...|++++|+..|...... .|| +..+-.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L---~~ddp~~~~~a 109 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI---KIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchHHHHH
Confidence 34444445556666666666666665532 33 233344444455556666666666655533 333 4555555
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 042098 456 VDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~ 475 (566)
..++...|+.+.|.+.|+..
T Consensus 110 g~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55556666666555555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.025 Score=49.51 Aligned_cols=158 Identities=11% Similarity=0.051 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS-EHYSCMVD 457 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~ 457 (566)
.-.....+...|++++|...|+++....+.-+--....-.++.++.+.|+++.|...++++.+.+.-.|.. ..+-.+..
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33445566778889999999998887642112223455667778888899999999998888774444432 22222222
Q ss_pred HHHh-----------cCCHHHHHHHHHhCCCC-CCHH-----------HH-------HHHHHHHHhcCCHHHHHHHHHHH
Q 042098 458 LYAR-----------AGHLSEAWDFVERMPEK-VDEI-----------VL-------GALLGACQKQKNTDVSQRVMQLL 507 (566)
Q Consensus 458 ~~~~-----------~g~~~~A~~~~~~~~~~-~~~~-----------~~-------~~l~~~~~~~~~~~~A~~~~~~~ 507 (566)
++.. .+...+|...|+.+..+ |+.. .. -.+..-|.+.|.+..|..-++.+
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2211 12234666666665442 2211 00 12346788899999999999999
Q ss_pred HhhCCCCch---hHHHHHHHHHhCCChHHHHH
Q 042098 508 LEIESSNSG---NYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 508 ~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 536 (566)
++..|+++. ....++.+|.+.|..+.|..
T Consensus 168 ~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 168 IENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999888754 55677889999999885543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0069 Score=54.96 Aligned_cols=93 Identities=10% Similarity=0.001 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHH
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPEK-VDE----IVLGALLGACQKQKNTDVSQRVMQLLLEIESSN---SGNYVISSK 523 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 523 (566)
|..-+..+.+.|++++|+..|+.+... |+. ..+-.+..++...|++++|...|+.+++..|++ +..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334445566666555555432 322 233444455555566666666666665554443 334444455
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 042098 524 IFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 524 ~~~~~g~~~~A~~~~~~~~~~ 544 (566)
++...|++++|.++++++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555566666666666555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.072 Score=47.99 Aligned_cols=194 Identities=10% Similarity=-0.021 Sum_probs=95.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--CCh-hH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 042098 261 LIDMYGKCGALVPARRVFDAMVN--KDV-VT---WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334 (566)
Q Consensus 261 li~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 334 (566)
....+...|++++|.+.|+.+.. |+. .. .-.+..++.+.+++++|...+++..+....-....+...+.+.+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445667888888888888744 222 11 2345567788888888888888887753332233444444443210
Q ss_pred CChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH
Q 042098 335 GALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414 (566)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~ 414 (566)
..- ...+. .-...+....+...+... ...+..++.-|=.+.-..+|...+..+... .-..
T Consensus 118 ~~~---~~~~~----~~~~~~~~~rD~~~~~~A--------~~~~~~li~~yP~S~ya~~A~~rl~~l~~~-----la~~ 177 (243)
T PRK10866 118 ALD---DSALQ----GFFGVDRSDRDPQHARAA--------FRDFSKLVRGYPNSQYTTDATKRLVFLKDR-----LAKY 177 (243)
T ss_pred hcc---hhhhh----hccCCCccccCHHHHHHH--------HHHHHHHHHHCcCChhHHHHHHHHHHHHHH-----HHHH
Confidence 000 00000 000000000111111111 012333333333333444554444443321 1111
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
.+ .+.+-|.+.|.+..|..-++.+.+.+.-.|. ......++.+|...|..++|.++...+
T Consensus 178 e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 EL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11 3455577777777777777777765332222 445666777777777777777665543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0089 Score=49.20 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=90.4
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhH
Q 042098 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK---VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS--NSGNY 518 (566)
Q Consensus 444 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~ 518 (566)
..-|++..-..|..++...|+..+|...|++...- .|......+.++....++...|...++.+.+..|. ++...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 55788887888999999999999999999998764 68888888999999999999999999999998764 67788
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 519 VISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
..++++|...|++++|+..|+.....-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 899999999999999999999887643
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.018 Score=53.53 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=47.3
Q ss_pred HHHhhh-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C----CHH-HHHH
Q 042098 421 SACVHA-GLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPEK----V----DEI-VLGA 486 (566)
Q Consensus 421 ~~~~~~-g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~-~~~~ 486 (566)
..|... |+++.|.+.|++....+.-... ..++..+...+.+.|++++|.++|+++... + +.. .+..
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 344444 5666666666665543221111 234555666677777777777777664321 1 111 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
.+-++...||...|.+.+++....+|.
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 233455567777777777777766653
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0018 Score=59.82 Aligned_cols=130 Identities=14% Similarity=0.042 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHh---HHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------C-CCH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLM---SSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE-------K-VDE 481 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~~~ 481 (566)
..|..|...|.-.|+++.|+...+.= .+.+|-... ...+..|.+++.-.|.++.|.+.|+.... + ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45667777777789999998776532 233343222 45788899999999999999998876432 2 345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----C--CCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEI----E--SSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.+.-+|.++|--..+++.|+.++.+=+.+ + ......+..|+.+|...|..++|....++-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56667778888888899999888876654 1 33467889999999999999999988766543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.011 Score=50.45 Aligned_cols=126 Identities=18% Similarity=0.198 Sum_probs=87.8
Q ss_pred HHHHhcC--CCCChhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHH
Q 042098 275 RRVFDAM--VNKDVVTWNAMITAYAQ-----NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347 (566)
Q Consensus 275 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 347 (566)
...|+.. ..++..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+. .+-
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg-~fv--------- 103 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG-KFV--------- 103 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC-Ccc---------
Confidence 4455555 45677788888888775 477888888899999999999999999999887542 111
Q ss_pred HHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC
Q 042098 348 SQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427 (566)
Q Consensus 348 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g 427 (566)
....+.++-.-| -.+-+-|++++++|...| +-||..|+..+++.+.+.+
T Consensus 104 ---------------------------p~n~fQ~~F~hy--p~Qq~c~i~lL~qME~~g--V~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 104 ---------------------------PRNFFQAEFMHY--PRQQECAIDLLEQMENNG--VMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ---------------------------cccHHHHHhccC--cHHHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHhcccc
Confidence 011111111111 234678999999999999 9999999999999998766
Q ss_pred c-HHHHHHHHHHhHH
Q 042098 428 L-VDEGRRLFDLMSS 441 (566)
Q Consensus 428 ~-~~~A~~~~~~~~~ 441 (566)
. ..+..++.-.|-+
T Consensus 153 ~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 153 HPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHHHHHHHH
Confidence 4 2334444444433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0011 Score=46.37 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQK-NTDVSQRVMQLLLEIES 512 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 512 (566)
...|..+...+...|++++|+..|++..+. .+...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345556666666666666666666665431 34455666666677777 57777777777777665
|
... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0011 Score=41.32 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
.+|..+...+...|++++|+++++++++..|+|+..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999998888764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.39 Score=48.29 Aligned_cols=224 Identities=10% Similarity=0.008 Sum_probs=115.0
Q ss_pred chhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHH-CCCCCCc--------ccHHHHHHHHHccCChhHH
Q 042098 68 FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR-LGLKPDN--------FTYPFVFISCANLLALNHG 138 (566)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~-~g~~p~~--------~~~~~ll~~~~~~~~~~~a 138 (566)
+++|.++.+.- |.+..|..+....... -.++.|...|-+... .|++.-. ..-..=+. +--|.+++|
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~K-l~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFK-LALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHH-HhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHh
Confidence 44555555443 6667777776655554 556666666555433 2322110 00011111 223788888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----ChhHHHHHHHHHHhcCChhHHHHHHHH---
Q 042098 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-----DLVSWNSMISGYSKMGYAKEAVELFGR--- 210 (566)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~--- 210 (566)
.+++-++-++. .-|..+.+.||+-...++++.-... -..+|+.+...+.....+++|.+.|..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88876665543 2345556666766666666543321 112344444444444444444333322
Q ss_pred ----------------hH--HCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHH
Q 042098 211 ----------------MR--EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272 (566)
Q Consensus 211 ----------------m~--~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 272 (566)
+. ...++.+....-.+.+++.+.|.-++|.+.+-+ .+.+ .+-+..|...++|.
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWG 895 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHH
Confidence 11 112344555556666777777777766655422 2222 33455666677777
Q ss_pred HHHHHHhcCCCCChhHHHH--------------HHHHHHHcCCHHHHHHHHHHHHH
Q 042098 273 PARRVFDAMVNKDVVTWNA--------------MITAYAQNGLSNEAIMLFNRMKY 314 (566)
Q Consensus 273 ~A~~~~~~~~~~~~~~~~~--------------li~~~~~~~~~~~a~~~~~~m~~ 314 (566)
+|.++-+...-|.+.+.-+ -|..+.+.|++-+|-+++.+|.+
T Consensus 896 ~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 896 EAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 7777766654443333211 23334556666667777777743
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.01 Score=46.86 Aligned_cols=85 Identities=14% Similarity=0.181 Sum_probs=66.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHh-------------CCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSK-------------EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-------------~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 441 (566)
|..++..+|.++++.|+.+....+++..-. .+.+..|+..+..+++.+|+..|++..|.++.+.+.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 346788999999999999999999877521 2233567888888888888888888888888888888
Q ss_pred hcCCCCChhHHHHHHHHH
Q 042098 442 SFGLIPKSEHYSCMVDLY 459 (566)
Q Consensus 442 ~~~~~p~~~~~~~l~~~~ 459 (566)
.++++.+..+|..|+.-.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 888777777777777543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.022 Score=46.94 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH-----hCCCccCCc
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR-----EKGVSKTPG 551 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~~~~~ 551 (566)
.....++..+...|+++.|.+..++++..+|.+...|..++.+|...|+..+|.+.++++. +.|+.|++.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 4556677888899999999999999999999999999999999999999999999998884 467776653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.046 Score=47.85 Aligned_cols=140 Identities=14% Similarity=0.024 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCch-----HHHHHH
Q 042098 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN-----FYMGSA 260 (566)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 260 (566)
...+.++..+...+.+.-.+..+.+..+...+.++.....+.+...+.||.+.|...++...+..-..+ ..+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 456778888888899999999999999887777888888889999999999999999998776543333 333344
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042098 261 LIDMYGKCGALVPARRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV 327 (566)
Q Consensus 261 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 327 (566)
....|.-.+++..|...+.+++.. |+..-|.-.-++.-.|+..+|++.++.|++. .|...+-+.+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 445677788999999999988664 4555666555666789999999999999986 4554444433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0017 Score=46.72 Aligned_cols=62 Identities=8% Similarity=0.068 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEI----ESS---NSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.+++.+...+...|++++|+..++++++. +++ -..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677778888888888888888888765 122 245777888888888998888888887654
|
... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.55 Score=48.91 Aligned_cols=261 Identities=9% Similarity=-0.032 Sum_probs=124.7
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHH
Q 042098 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341 (566)
Q Consensus 262 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 341 (566)
+..+.+.+++.....++..- ..+...-.....+....|+.++|....+.+-..|. ..+..+..++..+.+.|.+....
T Consensus 106 l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d 183 (644)
T PRK11619 106 VNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLA 183 (644)
T ss_pred HHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHH
Confidence 33444566666666633222 23444444455566666776666666666544442 23455666666666555444332
Q ss_pred HHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH---H
Q 042098 342 WVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI---G 418 (566)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~---~ 418 (566)
++.++...-. .|+...|..+...+..........++..+ .+...+..++.. ++|+...-. .
T Consensus 184 -~w~R~~~al~-----~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~-------~~~~~~~~~~~~~ 247 (644)
T PRK11619 184 -YLERIRLAMK-----AGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFART-------TGPTDFTRQMAAV 247 (644)
T ss_pred -HHHHHHHHHH-----CCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc-------cCCChhhHHHHHH
Confidence 2222211110 14445555554444211111222222222 122222222211 112221111 1
Q ss_pred HHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcC
Q 042098 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKS--EHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQK 495 (566)
Q Consensus 419 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 495 (566)
.+.-+ ...+.+.|...+.......++.+.. .+...+.......+...+|...++..... .+.....--+......+
T Consensus 248 ~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASV-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHcc
Confidence 11222 2344567777777665443443332 23344444444443355666666655432 34444444455555677
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
+++.+...+..+-...........-+++++...|+.++|..+|+++
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777776666664443445556666777777777777777777765
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.004 Score=59.45 Aligned_cols=96 Identities=9% Similarity=0.016 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH-
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE-KVDE----IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS- 522 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~- 522 (566)
...++.+..+|...|++++|+..|++... .|+. .+|..+..+|...|+.++|+..++++++..+. .|..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~~ 151 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTILN 151 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHHh
Confidence 56677777788888888888888877544 3553 34777777888888888888888888776322 121111
Q ss_pred -HHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 523 -KIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 523 -~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
..+....+.++..++++.+.+.|..
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1122334445666777777766654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0038 Score=44.17 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=49.5
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 457 DLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
..|.+.+++++|+++++.+..- .+...|......+.+.|++++|.+.++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 5677888888888888887653 3455666677888888899999999999988888776655443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.38 Score=44.95 Aligned_cols=275 Identities=13% Similarity=0.063 Sum_probs=177.2
Q ss_pred cCCCchhHHHHhhcCC---CCCcchHHHHHHH--HHcCCCChhHHHHHHHHHHHCCCCCCcccHH----HHHHHHHccCC
Q 042098 64 DLKDFNYASLLFHQIS---RPNEYAFNVMIRG--LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYP----FVFISCANLLA 134 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~~~ 134 (566)
..|+-..|+++-.+.. ..|....-.++.+ -.-. |+++.|.+-|+.|.. |+.|-. .|.-..-+.|+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~e-G~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLE-GDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhc-CchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhccc
Confidence 6788888887766543 2333333334432 2234 899999999999976 333332 22223346788
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CChh--HHHHHHHHHHh---cCChhHH
Q 042098 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-----RDLV--SWNSMISGYSK---MGYAKEA 204 (566)
Q Consensus 135 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~--~~~~li~~~~~---~~~~~~a 204 (566)
.+.|.++-+..-..- +.-...+.+++...+..|+++.|+++++.-.. +++. .-..|+.+-.. ..+...|
T Consensus 170 reaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 170 REAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 888888877766543 23356788888899999999999999886653 4432 12223322211 2345556
Q ss_pred HHHHHHhHHCCCCCCHHH-HHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHH----HHHHh
Q 042098 205 VELFGRMREEEFLPDEIT-LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA----RRVFD 279 (566)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~ 279 (566)
.+.-.+..+ +.||-.- -.....++.+.|++.++-.+++.+-+..+.|+.. ++..+.+.|+.... .+-+.
T Consensus 249 r~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~ 322 (531)
T COG3898 249 RDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLE 322 (531)
T ss_pred HHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHH
Confidence 555544433 5666443 2334467889999999999999999988888753 44456677764332 23455
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-hccCChhHHHHHHHHHHHhCCC
Q 042098 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC-ASIGALDLGKWVDKYASQRGLR 353 (566)
Q Consensus 280 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~ 353 (566)
.|...|..+.-.+..+-...|++..|..--+.... ..|....|..+-+.- ...|+-.++.+.+....+..-.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 66667777887888888888999888776666555 367777777776654 4447777777777666665443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.43 Score=45.42 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHH-HH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY-SC 454 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~ 454 (566)
..+|.+.+..-.+....+.|..+|-++.+.|. +.++...++.++..++. |+...|..+|+.-... -||...| .-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-VGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-CCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 56788888888888889999999999999873 56888888888887765 8888999999876654 4554443 45
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
.+..+.+.++-+.|..+|+....+ .-...|..++.--..-|+...+..+-+++.+.-|..
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 667778899999999999966543 235788999988888999999999989988887764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.024 Score=44.26 Aligned_cols=90 Identities=14% Similarity=0.042 Sum_probs=48.3
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCH--HHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCc--hHHHHHHHHHHHHh
Q 042098 192 ISGYSKMGYAKEAVELFGRMREEEFLPDE--ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL--NFYMGSALIDMYGK 267 (566)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~ 267 (566)
..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++......+.. +......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34555667777777777777776655442 234445555566666666666666655543321 11112223334455
Q ss_pred cCCHHHHHHHHhcC
Q 042098 268 CGALVPARRVFDAM 281 (566)
Q Consensus 268 ~g~~~~A~~~~~~~ 281 (566)
.|+.++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 55666555555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.68 Score=47.12 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042098 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492 (566)
Q Consensus 413 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 492 (566)
..|.+--+.-+...|+..+|.++-.+++ .||...|..=+.+++..++|++-+++-+.... +.-|.-+..+|.
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEACL 755 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHHH
Confidence 3344445555666777777777765543 56777777777788888888777777766653 455666677788
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHH
Q 042098 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537 (566)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (566)
+.|+.++|.+++-+.-. .+ ....+|.+.|++.+|.++
T Consensus 756 ~~~n~~EA~KYiprv~~----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hcccHHHHhhhhhccCC----hH----HHHHHHHHhccHHHHHHH
Confidence 88888887777655421 11 566777777777777765
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.19 Score=47.22 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=49.4
Q ss_pred hhhCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcC
Q 042098 424 VHAGLVDEGRRLFDLMSSSFGLIPK-----SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL---GACQKQK 495 (566)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~---~~~~~~~ 495 (566)
.+.|.+..|.+.+.+.+ ++.|+ ...|.....+..+.|+..+|+.-.++... .|......++ .++...+
T Consensus 260 fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~-iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK-IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh-cCHHHHHHHHHHHHHHHHHH
Confidence 35577777777776665 33443 34455555666677777777776666653 2333323322 3444556
Q ss_pred CHHHHHHHHHHHHhhC
Q 042098 496 NTDVSQRVMQLLLEIE 511 (566)
Q Consensus 496 ~~~~A~~~~~~~~~~~ 511 (566)
++++|.+-++++.+..
T Consensus 336 ~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 7777777777776654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.5 Score=45.10 Aligned_cols=422 Identities=10% Similarity=0.024 Sum_probs=211.2
Q ss_pred HHcCCCChhHHHHHHHHHHHCCCCCCccc------HHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHH--HH
Q 042098 93 LTTAWQKYSHSLKLYYQMKRLGLKPDNFT------YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT--MY 164 (566)
Q Consensus 93 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~ 164 (566)
+-+. +++.+|..+|.+..+.. .-++.. -+.+++++. ..+.+.....+....+.- | ...|-.+.. .+
T Consensus 16 Lqkq-~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 16 LQKQ-KKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVA 89 (549)
T ss_pred HHHH-hhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence 3456 89999999999987642 222222 234555554 356666666666665532 2 222333332 24
Q ss_pred HhcCCHHHHHHHHhccCC------------------CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCC----CCCCHHH
Q 042098 165 ARCGKLDSARKVFDEIRE------------------RDLVSWNSMISGYSKMGYAKEAVELFGRMREEE----FLPDEIT 222 (566)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~t 222 (566)
-+.+++++|.+.+....+ +|...=+..+.++...|.+.++..++++|...= ..-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 577889999888765543 122334667888999999999999999886542 3367888
Q ss_pred HHHHHHHhcCCC--------C-------chhHHHHHHHHHHh------CCCchHHHHHHHHHHHHhcC--C---HHHHHH
Q 042098 223 LVSVLGSCGDLG--------D-------LVLGKWVEGFVVKN------KMDLNFYMGSALIDMYGKCG--A---LVPARR 276 (566)
Q Consensus 223 ~~~ll~~~~~~~--------~-------~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g--~---~~~A~~ 276 (566)
|+.++-.++++- . ++.+.....++... .+.|.......++....-.. + +-.+.+
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 887444443321 1 12222222222221 22333333333333322211 1 111222
Q ss_pred HHhcC-CCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----CHhHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 042098 277 VFDAM-VNKDV-VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP----DKITLIGVLSACASIGALDLGKWVDKYASQR 350 (566)
Q Consensus 277 ~~~~~-~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 350 (566)
.++.- ..|+- -....++..+.+ +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+..+.-.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 22211 12221 122233333333 4455554444443322111 2346778888888888888888888777654
Q ss_pred CCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHH-HHHHHH---HHhhh
Q 042098 351 GLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT-FIGVLS---ACVHA 426 (566)
Q Consensus 351 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t-~~~ll~---~~~~~ 426 (566)
..... ..+.+--..+.+..+...|-..++. ..+=+.++++....+ .|..- ...|+. -+-+.
T Consensus 328 dp~~s-vs~Kllls~~~lq~Iv~~DD~~~Tk----------lr~yL~lwe~~qs~D----iDrqQLvh~L~~~Ak~lW~~ 392 (549)
T PF07079_consen 328 DPRIS-VSEKLLLSPKVLQDIVCEDDESYTK----------LRDYLNLWEEIQSYD----IDRQQLVHYLVFGAKHLWEI 392 (549)
T ss_pred CCcch-hhhhhhcCHHHHHHHHhcchHHHHH----------HHHHHHHHHHHHhhc----ccHHHHHHHHHHHHHHHHhc
Confidence 43322 1122211122222222212111211 222334444444433 23222 122222 23334
Q ss_pred Cc-HHHHHHHHHHhHHhcCCCCC-hhHHHHHH----HHHHhc---CCHHHHHH---HHHhCCCC----CCHHHHHHHHH-
Q 042098 427 GL-VDEGRRLFDLMSSSFGLIPK-SEHYSCMV----DLYARA---GHLSEAWD---FVERMPEK----VDEIVLGALLG- 489 (566)
Q Consensus 427 g~-~~~A~~~~~~~~~~~~~~p~-~~~~~~l~----~~~~~~---g~~~~A~~---~~~~~~~~----~~~~~~~~l~~- 489 (566)
|. -++|.++++.+.+ +.|. ..+-+.+. .+|..+ ..+.+-+. .+++..-. .+...-|.|..
T Consensus 393 g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 393 GQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred CCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 44 6667777766653 2332 22211111 222211 11222222 22222111 23344455553
Q ss_pred -HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 490 -ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 490 -~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
-+...|++.++.-.-..+.+..| ++.+|..++-++...++|++|..+++.+
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 35567888888888777888888 7888888888888888888888888654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.16 Score=50.41 Aligned_cols=224 Identities=13% Similarity=0.115 Sum_probs=113.5
Q ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 290 NAMITAYAQNGL--SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 290 ~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
+..=.+|.+..+ +-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|-.+|.+. |.-..|.++
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~-----------G~enRAlEm 667 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS-----------GHENRALEM 667 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc-----------CchhhHHHH
Confidence 333345554443 44556667888888888886543 34456677777777776552 444556666
Q ss_pred HccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHhhhCcHHHHHHHHH-----HhHH
Q 042098 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA-RPNDVTFIGVLSACVHAGLVDEGRRLFD-----LMSS 441 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~-----~~~~ 441 (566)
|..+. .| -..+-+...|..++-..+.++-.+.-.++ +|. +....+...|+.++|..+.- ++.-
T Consensus 668 yTDlR-----MF-D~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~li 736 (1081)
T KOG1538|consen 668 YTDLR-----MF-DYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLI 736 (1081)
T ss_pred HHHHH-----HH-HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHH
Confidence 54433 11 12334445555554444443322111001 121 11223334455554443321 0100
Q ss_pred hcCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch--
Q 042098 442 SFGLI---PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG-- 516 (566)
Q Consensus 442 ~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-- 516 (566)
.-+-+ .+..+...+..-+.+...+.-|.++|.+|.+. .++++.....+++++|..+.++.-+.-|+-.-
T Consensus 737 dI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~py 810 (1081)
T KOG1538|consen 737 DIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPY 810 (1081)
T ss_pred HHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCccccccccchH
Confidence 00111 12344444455555666677777777777632 34556667777888887777666554333111
Q ss_pred --------hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 517 --------NYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 517 --------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
-+...-.+|.+.|+-.+|.++++++...
T Consensus 811 aqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 811 AQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1222234566667777777777666543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.5 Score=44.39 Aligned_cols=104 Identities=16% Similarity=0.046 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChh
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 338 (566)
+..|.-+...|+...|.++-.+..-|+..-|...+.+++..++|++-.++... +-++..|..++.+|...|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 44566667778888888888888778888888888888888888877665432 224477778888888877777
Q ss_pred HHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHH
Q 042098 339 LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398 (566)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 398 (566)
+|..+...+ .+..-+..|.+.|++.+|.+.
T Consensus 255 eA~~yI~k~------------------------------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 255 EASKYIPKI------------------------------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHhC------------------------------ChHHHHHHHHHCCCHHHHHHH
Confidence 666555431 134556677777777777654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.54 Score=46.89 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=60.9
Q ss_pred HHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhH
Q 042098 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS 440 (566)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 440 (566)
.+-+.++-+++...+..+...+..-+.+...+.-|-++|.+|-.. ..+++.....+++++|..+-+..-
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-----------ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-----------KSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----------HHHhhheeecccchHhHhhhhhCc
Confidence 334444444444445555555556666666777777777776432 235556667788888877766543
Q ss_pred HhcCCCCChhH-----------HHHHHHHHHhcCCHHHHHHHHHhCCC
Q 042098 441 SSFGLIPKSEH-----------YSCMVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 441 ~~~~~~p~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
.+.||+.. +.---.+|.++|+-.+|.++++++..
T Consensus 801 ---e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 801 ---EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 44555321 22223566777777777777777654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.027 Score=52.70 Aligned_cols=95 Identities=19% Similarity=0.131 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (566)
.++..|.-+|.+.+++.+|++..++.+. .++....--=..++...|+++.|...|+++++.+|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4677788899999999999999998875 36666666667899999999999999999999999999999999888888
Q ss_pred CCChHHH-HHHHHHHHhC
Q 042098 528 LKMWDDS-AKMRALMREK 544 (566)
Q Consensus 528 ~g~~~~A-~~~~~~~~~~ 544 (566)
..++++. .++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7776666 7788888643
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.79 Score=43.76 Aligned_cols=127 Identities=15% Similarity=0.161 Sum_probs=98.4
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHH-HHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFG-LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVL-GALLGAC 491 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~~l~~~~ 491 (566)
.|..++.+-.+..-++.|..+|-++.+. + +.+++.++++++.-++ .|+...|.++|+--... ||...| .-.+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4556677777777889999999999887 6 6777889999998665 57889999999876554 776665 3455667
Q ss_pred HhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 492 QKQKNTDVSQRVMQLLLEIESS--NSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
...+|-+.|..+|+..++.-.. -..+|..++..-..-|+...|..+=++|.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7889999999999977765322 256888999999999999888877776654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.013 Score=54.64 Aligned_cols=67 Identities=13% Similarity=0.001 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 481 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
..++..+.-++.+.+++..|++.-.+.++.+|+|.-....-+.+|...|+++.|+..|+++.+..+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 5577888889999999999999999999999999999999999999999999999999999876543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.071 Score=42.56 Aligned_cols=90 Identities=11% Similarity=0.076 Sum_probs=62.8
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHh
Q 042098 456 VDLYARAGHLSEAWDFVERMPEK-V----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG---NYVISSKIFAN 527 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 527 (566)
.....+.|++++|.+.|+.+..+ | ....-..++.++.+.++++.|...+++.++++|.++. ++...+-++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 44456778888888888888764 2 3345566788899999999999999999999887754 33344444445
Q ss_pred CCC---------------hHHHHHHHHHHHhCC
Q 042098 528 LKM---------------WDDSAKMRALMREKG 545 (566)
Q Consensus 528 ~g~---------------~~~A~~~~~~~~~~g 545 (566)
... ...|...|++++++-
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 444 667777777776653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.02 Score=50.84 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C-CHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPEK----V-DEIVLG 485 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~ 485 (566)
.|+.-+..+ +.|++..|...|...++. -|+ ...+..|...+...|++++|..+|..+... | -+..+-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~---YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK---YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc---CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 455544433 456677777777777664 222 334455666666666666666665554332 1 123444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
-|..+..+.|+.+.|...|+++.+..|..+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 4445555556666666666666665565544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.59 Score=44.45 Aligned_cols=129 Identities=14% Similarity=0.062 Sum_probs=81.8
Q ss_pred HHHHHHH---cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh---------hCcHHHHHHHHHHhHHhcCCCCCh
Q 042098 382 MISALAF---NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH---------AGLVDEGRRLFDLMSSSFGLIPKS 449 (566)
Q Consensus 382 li~~~~~---~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~p~~ 449 (566)
..-++.+ .|+.++|+.++..+.... ..+++.||..+.+.|-. ....++|+..+.+.- .+.|+.
T Consensus 185 yafALnRrn~~gdre~Al~il~~~l~~~--~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~ 259 (374)
T PF13281_consen 185 YAFALNRRNKPGDREKALQILLPVLESD--ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDY 259 (374)
T ss_pred HHHHHhhcccCCCHHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccc
Confidence 3445556 899999999999965555 57888898888776532 224677887777554 445663
Q ss_pred hHHHHHHHHHHhcCC----HHHHHHHH---Hh-CCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 450 EHYSCMVDLYARAGH----LSEAWDFV---ER-MPE------KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~----~~~A~~~~---~~-~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
..=-.++..+.-.|. -.+..++- .. ... ..+-.-+.+++.++.-.||.+.|.+..+++.+..|+.-
T Consensus 260 Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 260 YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 322222223333332 12223322 11 111 14555667888999999999999999999999877643
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.039 Score=49.03 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMV 456 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 456 (566)
.|+.-+..+ +.|++..|...|...++..+.-.-....+--|..++...|++++|..+|..+.+.++-.|. +..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577766654 6677999999999999875222223445667889999999999999999999988665555 57888899
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC-CCHHH
Q 042098 457 DLYARAGHLSEAWDFVERMPEK-VDEIV 483 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~ 483 (566)
....+.|+.++|...|+++.++ |+...
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999876 65443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0064 Score=43.69 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE--------KVD-EIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
+|+.+...|...|++++|+..|++... .|+ ..++..+..++...|++++|++.++++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455555555555555555555554332 122 445566666777777777777777766553
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.007 Score=56.16 Aligned_cols=132 Identities=10% Similarity=0.082 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH----HHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh---cC-CCCCh
Q 042098 378 SWNAMISALAFNGRAHEALLLFER----MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS---FG-LIPKS 449 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~----m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~-~~p~~ 449 (566)
.|..|...|.-.|+++.|+..-+. ..+.|. -......+..+..++.-.|+++.|.+.++..... .| -....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 466666666677889998876543 223331 1123456778888888899999999888765432 01 11223
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-------C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE-------K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
.+..+|.+.|.-..++++|+.++.+-.. + .....+.+|..++...|..++|+.+.+..++.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4566788889888999999998876432 2 45678888999999999999999888887764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.17 Score=45.71 Aligned_cols=104 Identities=11% Similarity=0.007 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhCCCC--CCHHHH
Q 042098 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG---HLSEAWDFVERMPEK--VDEIVL 484 (566)
Q Consensus 410 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~--~~~~~~ 484 (566)
+-|...|-.|...|...|+.+.|...|....+.- .+++..+..+..++.... ...++.++|+++... .+..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 4567788888888888888888888888877542 233556666666654432 456778888887653 445555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
..|...+...|++.+|...|+.|++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 5566788888888888888888888876654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.4 Score=48.02 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=105.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-----HHHHHHHHHHhh----hCcHHHHHHHHHHhHHhcCCCCCh
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPND-----VTFIGVLSACVH----AGLVDEGRRLFDLMSSSFGLIPKS 449 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-----~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~ 449 (566)
...++....=.|+-+.+++.+.+..+.+. +.-.. .+|..++..++. ....+.|.++++.+.+. -|+.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~-i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSEN-IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 45566666667788888888877665431 11111 223334443333 34678888888888865 5776
Q ss_pred hHHHHH-HHHHHhcCCHHHHHHHHHhCCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH-H
Q 042098 450 EHYSCM-VDLYARAGHLSEAWDFVERMPEK------VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI-S 521 (566)
Q Consensus 450 ~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l 521 (566)
..|... .+.+...|++++|++.|++.... .....+--+...+...+++++|.+.|.++.+.+.-+..+|.. .
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 555433 35566788999999999876541 122333445566777889999999999999877666665554 4
Q ss_pred HHHHHhCCCh-------HHHHHHHHHHHh
Q 042098 522 SKIFANLKMW-------DDSAKMRALMRE 543 (566)
Q Consensus 522 ~~~~~~~g~~-------~~A~~~~~~~~~ 543 (566)
+.++...|+. ++|.+++.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 5667788888 888888887753
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.093 Score=50.52 Aligned_cols=142 Identities=9% Similarity=0.069 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhh---------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 042098 392 AHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHA---------GLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYA 460 (566)
Q Consensus 392 ~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 460 (566)
.+.|+.+|.+...... +.|+ ...|..+..++... .+..+|.+.-++..+. .| |......+..++.
T Consensus 274 ~~~Al~lf~ra~~~~~-ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel---d~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 274 IYRAMTIFDRLQNKSD-IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI---TTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHhhccc-CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 5677778888772210 4455 34555554443321 2344555555555533 33 3556666666667
Q ss_pred hcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH--HHHHHHHhCCChHHHHH
Q 042098 461 RAGHLSEAWDFVERMPE-KV-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV--ISSKIFANLKMWDDSAK 536 (566)
Q Consensus 461 ~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~ 536 (566)
-.++++.|...|++... .| ....|-.....+.-.|+.++|.+.++++++++|.-..+-. ..++.|+.. ..++|.+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 77778888888887654 23 3445555555566678888888888888888876544333 333345544 4555655
Q ss_pred HH
Q 042098 537 MR 538 (566)
Q Consensus 537 ~~ 538 (566)
++
T Consensus 429 ~~ 430 (458)
T PRK11906 429 LY 430 (458)
T ss_pred HH
Confidence 54
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.083 Score=43.47 Aligned_cols=73 Identities=21% Similarity=0.258 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHH----hcCCCCChhHH
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS----SFGLIPKSEHY 452 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~ 452 (566)
.+...++..+...|++++|..+.+.+.... +-+...+..++.++...|+...|.++|+.+.+ ..|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 456677788889999999999999999874 56778999999999999999999999988854 35888886653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.87 Score=39.86 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=33.2
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 262 IDMYGKCGALVPARRVFDAMVN--K----DVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 262 i~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
...+...|++++|.+.|+.+.. | -....-.++.++.+.|++++|...+++..+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566777777777777633 2 1224445666777788888888888877664
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.89 Score=44.21 Aligned_cols=98 Identities=8% Similarity=0.083 Sum_probs=57.4
Q ss_pred HHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CC--HHHHHHHHHHHH
Q 042098 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VD--EIVLGALLGACQ 492 (566)
Q Consensus 417 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~~~l~~~~~ 492 (566)
..+..++-+.|+.++|++.++++.+.+...-+..+...|+.++...+.+.++..++.+..+- |. ..+|+..+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 44555566677777777777777654221112445666777777777777777777776532 22 233444443333
Q ss_pred hcCC---------------HHHHHHHHHHHHhhCCCC
Q 042098 493 KQKN---------------TDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 493 ~~~~---------------~~~A~~~~~~~~~~~p~~ 514 (566)
..+| -..|.+++.++.+.+|.-
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 2332 234567788888877654
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.49 Score=42.67 Aligned_cols=118 Identities=12% Similarity=0.096 Sum_probs=67.6
Q ss_pred HHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCH
Q 042098 422 ACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA---LLGACQKQKNT 497 (566)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~ 497 (566)
.....|++.+|...|+..... .|+ ...--.++.+|...|+.+.|..++..++.+-...-+.. -+..+.+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344567777777777666543 222 45555667777777777777777777765422222222 22333333333
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 498 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.+...+ ++-...+|+|...-..++..+...|+.++|.+.+=.+.+
T Consensus 220 ~~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PEIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333332 222334677777777777777777777777776554443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.5 Score=41.26 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=53.3
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 042098 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARA 462 (566)
Q Consensus 384 ~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 462 (566)
.++.+.|+..++-.+++.+.+.. |.+....... ..+.|+ .+..-+++..+...++|| ....-.+..+-...
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~e----PHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAE----PHPDIALLYV--RARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcC----CChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 44555566666666666665543 3332222111 122232 222222222222233444 33444455555555
Q ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 042098 463 GHLSEAWDFVERMPE-KVDEIVLGALLGACQKQ-KNTDVSQRVMQLLLE 509 (566)
Q Consensus 463 g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 509 (566)
|++..|..--+.... .|....|..|...-... ||-+++.+.+-+.++
T Consensus 343 ~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 343 GEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 665555544443332 25555555555443333 566666655555554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.1 Score=40.55 Aligned_cols=169 Identities=13% Similarity=0.074 Sum_probs=114.2
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc
Q 042098 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443 (566)
Q Consensus 364 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 443 (566)
..++++...++....--.-.......|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+-..
T Consensus 122 lr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~- 197 (304)
T COG3118 122 LRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ- 197 (304)
T ss_pred HHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-
Confidence 3444444443322222233345678899999999999988864 334566677888999999999999999876543
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchhHHH
Q 042098 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIE--SSNSGNYVI 520 (566)
Q Consensus 444 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~ 520 (566)
.-.........-+..+.+.....+...+-.+.-..| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 111112223344566666666666666666665556 56666677788899999999998888888764 556778888
Q ss_pred HHHHHHhCCChHHHHH
Q 042098 521 SSKIFANLKMWDDSAK 536 (566)
Q Consensus 521 l~~~~~~~g~~~~A~~ 536 (566)
++.++...|.-+.+..
T Consensus 278 lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 278 LLELFEAFGPADPLVL 293 (304)
T ss_pred HHHHHHhcCCCCHHHH
Confidence 8888888885554433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.2 Score=39.55 Aligned_cols=164 Identities=14% Similarity=0.118 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 457 (566)
.|+.- ..-.+.|++++|.+.|+.+..+.+.-+-...+...++-++.+.++++.|...+++..+.++-.||.. |...+.
T Consensus 37 LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 37 LYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 34443 3446789999999999999876532233456667777788899999999999999998876666642 333333
Q ss_pred HHHhc-------CCHH---HHHHHHHhCCCC-------CCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 042098 458 LYARA-------GHLS---EAWDFVERMPEK-------VDEIVL------------GALLGACQKQKNTDVSQRVMQLLL 508 (566)
Q Consensus 458 ~~~~~-------g~~~---~A~~~~~~~~~~-------~~~~~~------------~~l~~~~~~~~~~~~A~~~~~~~~ 508 (566)
+++.- .|.. +|..-|+++..+ ||...- -.+.+-|.+.|.+.-|..-+++++
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 33321 2333 333333333332 332211 223467889999999999999999
Q ss_pred hhCCCCch---hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 509 EIESSNSG---NYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 509 ~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
+..|+.+. .+..+..+|.+.|-.++|.+.-+-+..
T Consensus 195 e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 195 ENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred hccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 98766544 555677889999999999998765544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.062 Score=47.54 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=85.5
Q ss_pred chhHHHHhhcCC--CCCcchHHHHHHHHHcC----CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC--------
Q 042098 68 FNYASLLFHQIS--RPNEYAFNVMIRGLTTA----WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL-------- 133 (566)
Q Consensus 68 ~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-------- 133 (566)
+-..++.|...+ ++|-.+|-+.+..+... ++.++-....++.|.+.|+.-|..+|+.||..+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 344556677775 67888888888777642 2667777788999999999999999999998876532
Q ss_pred --------ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhccC
Q 042098 134 --------ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK-LDSARKVFDEIR 181 (566)
Q Consensus 134 --------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~ 181 (566)
.-+=+.+++++|...|+.||..+-..|++++.+.+- ..+..++.--|+
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 223467889999999999999999999999988765 334445544444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.42 Score=39.23 Aligned_cols=95 Identities=14% Similarity=0.049 Sum_probs=66.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 460 (566)
....-+...|++++|..+|+-+...+ .-+..-+..|...+-..+++++|...|...... + .-|+..+-....+|.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l 116 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHH
Confidence 34445567889999999998887754 233444455555666678889999888776643 2 234555556778888
Q ss_pred hcCCHHHHHHHHHhCCCCCC
Q 042098 461 RAGHLSEAWDFVERMPEKVD 480 (566)
Q Consensus 461 ~~g~~~~A~~~~~~~~~~~~ 480 (566)
..|+.+.|.+.|+....+|.
T Consensus 117 ~l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 117 LMRKAAKARQCFELVNERTE 136 (165)
T ss_pred HhCCHHHHHHHHHHHHhCcc
Confidence 88888888888888776654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.11 Score=50.01 Aligned_cols=65 Identities=12% Similarity=0.012 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 042098 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS----EHYSCMVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 410 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
+.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888888999999999999999988754 6773 3588899999999999999999988775
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.32 Score=38.46 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh
Q 042098 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~ 425 (566)
.|+..+..+++.+|+..|++..|+++++...+.=+ ++.+..+|..|+.-+..
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP-IPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999876532 77788999999886544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.38 E-value=2.6 Score=40.18 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=50.9
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHCC---CCCCcccHHHHHHHHHc---cCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 042098 88 VMIRGLTTAWQKYSHSLKLYYQMKRLG---LKPDNFTYPFVFISCAN---LLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161 (566)
Q Consensus 88 ~ll~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 161 (566)
.++-.|-.. .+++..+++.+.|...- +.-+...-....-++.+ .|+.++|++++..+......+++.++..+.
T Consensus 146 ~lllSyRdi-qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDI-QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhh-hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 333457666 89999999999998741 11111111122334445 789999999998876666678888888777
Q ss_pred HHHH
Q 042098 162 TMYA 165 (566)
Q Consensus 162 ~~~~ 165 (566)
+.|-
T Consensus 225 RIyK 228 (374)
T PF13281_consen 225 RIYK 228 (374)
T ss_pred HHHH
Confidence 7763
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.30 E-value=3 Score=40.26 Aligned_cols=34 Identities=9% Similarity=0.037 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 495 KNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
++.+.+...|+.+.+..|.....|..++..+.+.
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 7888999999999999999888888887776654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.91 Score=40.53 Aligned_cols=128 Identities=16% Similarity=0.170 Sum_probs=89.8
Q ss_pred HHHHHHHhcCC--CCChhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHH
Q 042098 272 VPARRVFDAMV--NKDVVTWNAMITAYAQ-----NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344 (566)
Q Consensus 272 ~~A~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 344 (566)
...++.|.... ++|..+|-..+..+.. .+.++-....++.|.+.|+.-|..+|..|+..+-+..-.
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi------- 123 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI------- 123 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc-------
Confidence 34456666665 5688888888887765 356777888899999999999999999999887553211
Q ss_pred HHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh
Q 042098 345 KYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424 (566)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~ 424 (566)
....+....--|-+ +-+-+++++++|...| +.||..+-..|+.++.
T Consensus 124 ------------------------------P~nvfQ~~F~HYP~--QQ~C~I~vLeqME~hG--VmPdkE~e~~lvn~FG 169 (406)
T KOG3941|consen 124 ------------------------------PQNVFQKVFLHYPQ--QQNCAIKVLEQMEWHG--VMPDKEIEDILVNAFG 169 (406)
T ss_pred ------------------------------cHHHHHHHHhhCch--hhhHHHHHHHHHHHcC--CCCchHHHHHHHHHhc
Confidence 11122222222322 3467899999999999 9999999999999998
Q ss_pred hhCcH-HHHHHHHHHhH
Q 042098 425 HAGLV-DEGRRLFDLMS 440 (566)
Q Consensus 425 ~~g~~-~~A~~~~~~~~ 440 (566)
+.+-. .+..++.-.|-
T Consensus 170 r~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 170 RWNFPTKKVKRMLYWMP 186 (406)
T ss_pred cccccHHHHHHHHHhhh
Confidence 87653 33444444443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.19 E-value=4.9 Score=42.13 Aligned_cols=164 Identities=11% Similarity=0.013 Sum_probs=82.5
Q ss_pred CcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcc-----cHHHHHHHHHccCChhHHHHHHHHHHHhCCC----C
Q 042098 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNF-----TYPFVFISCANLLALNHGVSVHSSVFKIGLD----E 152 (566)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~ 152 (566)
+..++-.+...+...-.+++.|...+++.....-+++-. .-..++..+.+.+... |...++..++.--. +
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 344555555655532277888888888765432222211 1123334444444333 77777776653211 2
Q ss_pred chhHHHHH-HHHHHhcCCHHHHHHHHhccCC-------CChhHHHHHHHHHH--hcCChhHHHHHHHHhHHCC-------
Q 042098 153 DDHVSHSL-ITMYARCGKLDSARKVFDEIRE-------RDLVSWNSMISGYS--KMGYAKEAVELFGRMREEE------- 215 (566)
Q Consensus 153 ~~~~~~~l-i~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~------- 215 (566)
-...+..+ +..+...++...|.+.++.+.. +-+..+-.++.+.. +.+..+++++..+++....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 22233333 3333333678878877776643 12233333333333 3455667777776663221
Q ss_pred --CCCCHHHHHHHHHHhc--CCCCchhHHHHHHHH
Q 042098 216 --FLPDEITLVSVLGSCG--DLGDLVLGKWVEGFV 246 (566)
Q Consensus 216 --~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~ 246 (566)
..|...+|..+++.++ ..|+++.+...+..+
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1334556666666553 456655665555444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.1 Score=44.36 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=61.2
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHH
Q 042098 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342 (566)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 342 (566)
+...+.|+++.|.++.++.. +...|..|.....++|+++-|.+.|.+..+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------------------------- 375 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------------------------- 375 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------------------
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------------------
Confidence 34456677777777666554 455677777777777777777766665432
Q ss_pred HHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 042098 343 VDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422 (566)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~ 422 (566)
|..|+-.|...|+.+.-.++.+.....| -++....+
T Consensus 376 ------------------------------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~--------~~n~af~~ 411 (443)
T PF04053_consen 376 ------------------------------------FSGLLLLYSSTGDREKLSKLAKIAEERG--------DINIAFQA 411 (443)
T ss_dssp ------------------------------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---------HHHHHHH
T ss_pred ------------------------------------ccccHHHHHHhCCHHHHHHHHHHHHHcc--------CHHHHHHH
Confidence 4555555666677666666666665555 34444555
Q ss_pred HhhhCcHHHHHHHHHHh
Q 042098 423 CVHAGLVDEGRRLFDLM 439 (566)
Q Consensus 423 ~~~~g~~~~A~~~~~~~ 439 (566)
+...|+.++..+++...
T Consensus 412 ~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 412 ALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHT-HHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHc
Confidence 55567777766666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.99 Score=41.36 Aligned_cols=158 Identities=12% Similarity=0.032 Sum_probs=88.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHH----HHHHHHHhcCC
Q 042098 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS----CMVDLYARAGH 464 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~ 464 (566)
.|++.+|-..++++.+. .+.|...+..-=++|...|+...-...++++... -.|+...|. .+.-++..+|-
T Consensus 116 ~g~~h~a~~~wdklL~d---~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD---YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred cccccHHHHHHHHHHHh---CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34555555556666554 4455566666666677777777766666666543 244433332 23334456777
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CchhHHHHHHHHHhCCChHHHHHHH
Q 042098 465 LSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS----NSGNYVISSKIFANLKMWDDSAKMR 538 (566)
Q Consensus 465 ~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (566)
+++|++.-++..+- .|.-.-.++...+.-.|+..++.++..+-...=.. -..-|...+-.+...+.++.|++++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777766542 34444455556666667777776665544321111 1223444555666677777777777
Q ss_pred HHHHhCCCccCCc
Q 042098 539 ALMREKGVSKTPG 551 (566)
Q Consensus 539 ~~~~~~g~~~~~~ 551 (566)
+.=.-....++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 7554434444444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.078 Score=30.46 Aligned_cols=32 Identities=19% Similarity=0.108 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45555666666677777777777776666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.54 Score=43.45 Aligned_cols=163 Identities=8% Similarity=-0.006 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hh
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPN---DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SE 450 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~---~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 450 (566)
+|-.+..++-+..++.+++.+-..-..... ..|. .....++..++...+.++++.+.|+...+--.-..| ..
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpg-t~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPG-TRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCC-CCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 455566666666666666665554433210 2221 123344666777778888888888877653111112 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhhC------C
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE-------KVDEIVL-----GALLGACQKQKNTDVSQRVMQLLLEIE------S 512 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~------p 512 (566)
++-.|.+.|.+..|+++|.-+..+..+ +.-...| -.+.-++...|....|.+.-+++.++. |
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 788899999999999888766554322 1111222 233467888899999998888887752 3
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 513 SNSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 513 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
-.......++++|...|+.|.|..-++.+
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 33455567899999999988887766654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.063 Score=30.93 Aligned_cols=32 Identities=16% Similarity=0.046 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666677777777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.6 Score=35.43 Aligned_cols=127 Identities=9% Similarity=0.031 Sum_probs=87.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
...++..+...+.+.....+++.+...+ . .+....+.++..|++.+ ..+....++. ..+.......++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~ 78 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN--S-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKL 78 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC--c-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHH
Confidence 5567788888889999999999998876 2 56678888888888764 3444455442 1233344457788
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 042098 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQ-KNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (566)
+.+.+.++++.-++.++.. +...+..+... ++.+.|.+++.+ +.++..|..++..+..
T Consensus 79 c~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 8888889999999988763 22233334444 788888887775 3466677777766553
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=2.3 Score=36.53 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=96.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHH--HHhhhCcHHHHHHHHHHhHHhcCCCCChhHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS--ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 452 (566)
-+.+||-+.--+...|+++.|.+.|+...+.+ |.- .|..+=+ ++.-.|++.-|.+-+...-.. .|+. .|
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD----p~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~D-Pf 168 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD----PTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPND-PF 168 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccC----Ccc-hHHHhccceeeeecCchHhhHHHHHHHHhc---CCCC-hH
Confidence 35679988888999999999999999998865 321 2222222 344568898888777666543 3332 12
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHHHHHHH
Q 042098 453 SCM-VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN-------SGNYVISSKI 524 (566)
Q Consensus 453 ~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~ 524 (566)
.+| +-.--+.-++.+|..-+.+--++.+..-|...+-.+.- |+.. -+.+++++.+...++ ..+|..|++-
T Consensus 169 R~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 169 RSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 221 11112344677776544433334555556554433321 2221 233444444433332 4678889999
Q ss_pred HHhCCChHHHHHHHHHHHhC
Q 042098 525 FANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 525 ~~~~g~~~~A~~~~~~~~~~ 544 (566)
+...|+.++|..+|+.....
T Consensus 247 ~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 247 YLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccccHHHHHHHHHHHHHH
Confidence 99999999999999877643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.76 E-value=7.7 Score=42.24 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=40.6
Q ss_pred CCHHHHHHHHccCCCCChhHH---HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHH
Q 042098 359 GSIDDALKVFEDMPVTNEVSW---NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435 (566)
Q Consensus 359 ~~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~ 435 (566)
|+|.+|..+-.++..+-.... ..|+.-+...+++-+|-+++.+.... |. -.+..+++...+++|.++
T Consensus 979 ~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-----~~-----~av~ll~ka~~~~eAlrv 1048 (1265)
T KOG1920|consen 979 GDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-----PE-----EAVALLCKAKEWEEALRV 1048 (1265)
T ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-----HH-----HHHHHHhhHhHHHHHHHH
Confidence 556666666655553322222 55666677777777777776665432 22 223445666677777776
Q ss_pred HHHh
Q 042098 436 FDLM 439 (566)
Q Consensus 436 ~~~~ 439 (566)
....
T Consensus 1049 a~~~ 1052 (1265)
T KOG1920|consen 1049 ASKA 1052 (1265)
T ss_pred HHhc
Confidence 6544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.73 E-value=2.3 Score=42.70 Aligned_cols=116 Identities=16% Similarity=0.066 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCHHHHHHHH-HHHhhhCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHH
Q 042098 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVL-SACVHAGLVDEGRRLFDLMSSSFGLIP--KSEHYSCMVDLYARAGHLS 466 (566)
Q Consensus 390 ~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 466 (566)
...+.|.++++.+.+. -|+...|...- +.+...|+.++|++.|+.......-.+ ....+.-+...+.-.++|+
T Consensus 247 ~~~~~a~~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 3456666666666654 25554443332 234456667777766665432101111 1234445555666666777
Q ss_pred HHHHHHHhCCCC--CCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHh
Q 042098 467 EAWDFVERMPEK--VDEIVLGALLG-ACQKQKNT-------DVSQRVMQLLLE 509 (566)
Q Consensus 467 ~A~~~~~~~~~~--~~~~~~~~l~~-~~~~~~~~-------~~A~~~~~~~~~ 509 (566)
+|.+.|..+.+. .+...|.-+.. ++...|+. ++|.++++++..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777766666543 23333333332 22334555 666666666544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.36 Score=37.46 Aligned_cols=93 Identities=16% Similarity=0.057 Sum_probs=53.2
Q ss_pred HHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CC----HHHHHHHHHHHHhcC
Q 042098 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VD----EIVLGALLGACQKQK 495 (566)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~----~~~~~~l~~~~~~~~ 495 (566)
+....|+.+.|++.|.+.... .+-+...||.-..++--.|+.++|++=+++..+- +. -..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 455667777777777666532 1223566666666666667777776666655431 11 112222334456666
Q ss_pred CHHHHHHHHHHHHhhCCCCch
Q 042098 496 NTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~ 516 (566)
+.+.|..-|+.+-+++.+...
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHH
Confidence 667777767666666654433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.61 E-value=2.6 Score=37.02 Aligned_cols=88 Identities=11% Similarity=0.003 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCchh
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE-------KVDE-IVLGALLGACQKQKNTDVSQRVMQLLLEI----ESSNSGN 517 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~ 517 (566)
..|....+.|.+..++++|-..+.+-.. -++. ..+...+-.+....|+..|+..++.-.+. .|++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 3455556667777777777666554332 1222 33445555566667888888888885554 3666777
Q ss_pred HHHHHHHHHhCCChHHHHHHH
Q 042098 518 YVISSKIFANLKMWDDSAKMR 538 (566)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~ 538 (566)
...|+.+| ..|+.+++.+++
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 77776655 457777777653
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.47 E-value=2.2 Score=34.64 Aligned_cols=113 Identities=7% Similarity=0.056 Sum_probs=63.2
Q ss_pred chHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 042098 84 YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163 (566)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 163 (566)
.....++..+... +.+.....+++.+...+. .+...++.++..+++.. .......++. .++.......++.
T Consensus 8 ~~~~~vv~~~~~~-~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKR-NLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhC-CcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHH
Confidence 3445666777666 777778888887776653 56667777777777543 2233333321 1233334446666
Q ss_pred HHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhc-CChhHHHHHHHH
Q 042098 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM-GYAKEAVELFGR 210 (566)
Q Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~ 210 (566)
|.+.+-++++.-++..+.. |...+..+... ++++.|.+++.+
T Consensus 79 c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 6666666666666665532 22233333333 556666665553
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.17 Score=39.19 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=76.7
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCC---chhHHHHHHHHHhCCC
Q 042098 457 DLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE-SSN---SGNYVISSKIFANLKM 530 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~ 530 (566)
-+++..|+.+.|++.|.+... ......||.-..++.-.|+.++|+.-+++++++. |.. ...|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 467889999999999998754 2467889999999999999999999999999984 443 2356667888999999
Q ss_pred hHHHHHHHHHHHhCCCc
Q 042098 531 WDDSAKMRALMREKGVS 547 (566)
Q Consensus 531 ~~~A~~~~~~~~~~g~~ 547 (566)
-+.|+.-|+..-+.|-+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 99999999999888754
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.24 E-value=1 Score=44.58 Aligned_cols=151 Identities=11% Similarity=0.051 Sum_probs=79.3
Q ss_pred CChhHHHHHHH--HHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 042098 98 QKYSHSLKLYY--QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175 (566)
Q Consensus 98 ~~~~~a~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~ 175 (566)
++++++.++.+ ++... + +..-.+.++..+-+.|-.+.|+++-. |+. .-.....+.|+++.|.+
T Consensus 275 ~d~~~v~~~i~~~~ll~~-i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLPN-I--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALE 339 (443)
T ss_dssp T-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHH
T ss_pred CChhhhhhhhhhhhhccc-C--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHH
Confidence 67777666654 11111 1 23346677777777777777777632 222 23455567788888888
Q ss_pred HHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchH
Q 042098 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255 (566)
Q Consensus 176 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (566)
+.++.. +...|..|.....+.|+++-|.+.|++..+ |..++-.|...|+.+.-.++.+.....|-
T Consensus 340 ~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~---- 404 (443)
T PF04053_consen 340 IAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD---- 404 (443)
T ss_dssp HCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----
T ss_pred HHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC----
Confidence 777665 556788888888888888888888877642 33334444445555555555444443332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhc
Q 042098 256 YMGSALIDMYGKCGALVPARRVFDA 280 (566)
Q Consensus 256 ~~~~~li~~~~~~g~~~~A~~~~~~ 280 (566)
++.-..++.-.|+.++..+++.+
T Consensus 405 --~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 --INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp --HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHH
Confidence 12333333344555555544433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.94 E-value=4.2 Score=35.95 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=39.3
Q ss_pred HHhcCCHHHHHHHHHhCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHH
Q 042098 459 YARAGHLSEAWDFVERMPEK-V--DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 535 (566)
+...++.+++...+.+.... + ....+..+...+...++.+.|...+.......|.....+..+...+...|+++++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 34444555555554444332 1 13344444444555555555555555555554443334444444444444455555
Q ss_pred HHHHHHH
Q 042098 536 KMRALMR 542 (566)
Q Consensus 536 ~~~~~~~ 542 (566)
..+++..
T Consensus 257 ~~~~~~~ 263 (291)
T COG0457 257 EALEKAL 263 (291)
T ss_pred HHHHHHH
Confidence 5544444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=4.6 Score=35.95 Aligned_cols=135 Identities=7% Similarity=-0.011 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHH----
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY---- 452 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~---- 452 (566)
..-++++..+.-.|.+.-.+..+.+.++.. .+-++.....|.+.-.+.||.+.|...|++..+..+ ..+....
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~--~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V 254 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYY--PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhC--CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHH
Confidence 356677788888888999999999999876 456777788888888999999999999998776522 3333333
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 453 -SCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 453 -~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
......|.-.+++.+|...+.++... .++...|.-.-+..-.|+..+|.+..+.+.+..|..
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 33334566677889999999888764 344444544445556789999999999999988764
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.78 E-value=2.5 Score=38.89 Aligned_cols=173 Identities=10% Similarity=0.043 Sum_probs=116.6
Q ss_pred cCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHH----HHHHHhhhCcHH
Q 042098 358 CGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG----VLSACVHAGLVD 430 (566)
Q Consensus 358 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~----ll~~~~~~g~~~ 430 (566)
.|...+|-..++++. +.|..+++..=+++.-.|+.+.-...++++... ..||...|.. +.-++...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 467777777777776 678888998889999999999999999998865 3466544433 333455789999
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 042098 431 EGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEKVD------EIVLGALLGACQKQKNTDVSQRV 503 (566)
Q Consensus 431 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~ 503 (566)
+|++.-++..+ ++|+ ...-.++...+.-.|++.++.++..+-...-+ ...|-...-.+...+.++.|+++
T Consensus 193 dAEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99998877653 3443 45556777888889999999999988765311 11222233345566899999999
Q ss_pred HHHHHh--hCCCCch---hHHHHHHHHHhCCChHHHHH
Q 042098 504 MQLLLE--IESSNSG---NYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 504 ~~~~~~--~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 536 (566)
|++-+- ++.+|.. .|..+-.+......|.+-.+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~ 307 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDK 307 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHh
Confidence 987553 3455553 33333444444444444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.77 E-value=2.1 Score=35.13 Aligned_cols=85 Identities=20% Similarity=0.157 Sum_probs=45.3
Q ss_pred hhhCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 042098 424 VHAGLVDEGRRLFDLMSSSFGLIPKSE-HYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQ 501 (566)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 501 (566)
.+.++.+++..+++.+.- +.|... .-..-...+.+.|+|.+|+.+|+++... |....-..|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 345666677777766653 355522 1122233456677777777777776654 44444455555555544433344
Q ss_pred HHHHHHHhhC
Q 042098 502 RVMQLLLEIE 511 (566)
Q Consensus 502 ~~~~~~~~~~ 511 (566)
...+++++.+
T Consensus 98 ~~A~evle~~ 107 (160)
T PF09613_consen 98 RYADEVLESG 107 (160)
T ss_pred HHHHHHHhcC
Confidence 4444444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.26 Score=41.42 Aligned_cols=124 Identities=14% Similarity=0.099 Sum_probs=79.5
Q ss_pred HHHhhhCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHh
Q 042098 421 SACVHAGLVDEGRRLFDLMSSSFGLIPK-----SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGACQK 493 (566)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~ 493 (566)
.-+.+.|++++|..-|...... +++. ...|..-.-++.+.+.++.|++-..+..+- |+ .....--..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 3577889999999999888764 2222 234555556778888888888877776542 32 1122222356777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHH--HHHHHHHhCCC
Q 042098 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA--KMRALMREKGV 546 (566)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~--~~~~~~~~~g~ 546 (566)
...++.|++-|+++++.+|.....-...+++--......+.. +++.+++..|-
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN 235 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGN 235 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888899999999999988887666665555543333333333 34555665553
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.15 Score=29.87 Aligned_cols=26 Identities=4% Similarity=0.022 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 517 NYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
++..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888889999999998888854
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.43 Score=43.29 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
++..++..+...|+++.+...++++... -+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4444555555555555555555544432 3444555555555555555555555555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.16 Score=31.40 Aligned_cols=34 Identities=6% Similarity=0.116 Sum_probs=29.8
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 515 SGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 515 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
|.++..++.+|.+.|++++|+++++++.+.....
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4578899999999999999999999999876543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=7.8 Score=37.87 Aligned_cols=118 Identities=9% Similarity=0.073 Sum_probs=82.3
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh---------cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 042098 428 LVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYAR---------AGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQK 495 (566)
Q Consensus 428 ~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 495 (566)
+.+.|..+|.+......+.|+ ...|..+..++.. .....+|.+.-++..+ ..|......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456777788887744466777 4455555444332 2234566666665544 356666666666667777
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
+.+.|...|+++..++|+...+|...+.++.-.|+.++|.+.+++..+..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 78888888888888888888888888888888888888888888765543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.58 E-value=2.4 Score=41.37 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=25.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhCCChHHHHHHHHH
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIESS--NSGNYVISSKIFANLKMWDDSAKMRAL 540 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (566)
+..++.+.|+.++|.+.++++++..|. +..+...|+.++...+.+.++..++.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344444445555555555555444332 233444455555555555555554443
|
The molecular function of this protein is uncertain. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.56 E-value=1.2 Score=41.28 Aligned_cols=122 Identities=11% Similarity=0.231 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHc--cC----ChhHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCH
Q 042098 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN--LL----ALNHGVSVHSSVFKIGL---DEDDHVSHSLITMYARCGKL 170 (566)
Q Consensus 100 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~~~~ 170 (566)
+++.+++++.|.+.|++-+..+|-+....... .. ....+..+++.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788999999988888777654433332 22 34567888888888653 2344455555433 23332
Q ss_pred ----HHHHHHHhccCC-----CCh-hHHHHHHHHHHhc-CC--hhHHHHHHHHhHHCCCCCCHHHHH
Q 042098 171 ----DSARKVFDEIRE-----RDL-VSWNSMISGYSKM-GY--AKEAVELFGRMREEEFLPDEITLV 224 (566)
Q Consensus 171 ----~~A~~~~~~~~~-----~~~-~~~~~li~~~~~~-~~--~~~a~~~~~~m~~~~~~p~~~t~~ 224 (566)
+.++..|+.+.+ .|. .....++ ++... .. ..++.++++.+.+.|+++....|.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iL-aL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHIL-ALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 233334433332 122 2222222 22221 11 235566666666666666555543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.39 E-value=3.4 Score=33.18 Aligned_cols=119 Identities=10% Similarity=0.016 Sum_probs=75.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 042098 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461 (566)
Q Consensus 382 li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 461 (566)
-.....+.|++++|.+.|+.+...-+.-+-....-..|+.++.+.++++.|...++++++.+--.|+ .-|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 3445567889999999999998764211223456677888899999999999999999976333333 345555565554
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
-...+..+.-+- . .=...+....|...|+.+++..|++..
T Consensus 95 ~~~~~~~~~~~~-~--------------~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 95 YEQDEGSLQSFF-R--------------SDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHhhhHHhhhc-c--------------cccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 433322222111 1 111122345788888888888888753
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.27 E-value=3.3 Score=35.08 Aligned_cols=130 Identities=10% Similarity=0.102 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHH--HHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----h
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG--VLSACVHAGLVDEGRRLFDLMSSSFGLIPK----S 449 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~--ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~ 449 (566)
...|..++.... .+.+ +.....+++.... -+....++.. +...+...|++++|..-++..... ..| .
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n--~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~ 126 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQAN--GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKA 126 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhc--cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHH
Confidence 344666655543 3333 5555556665432 1111122222 234466777788887777765532 222 1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKV-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
.+--.|.+.....|.+++|+..++....+. .......-..++...|+.++|...|+++++.++
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 122344566677778888888777766431 122223334677777788888888877777653
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.27 E-value=4.6 Score=34.25 Aligned_cols=91 Identities=13% Similarity=0.044 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL-----GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
.+...+..+|++++|+..++.....|....+..++ +.....|.++.|+..++...... -.+.....-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHc
Confidence 34567889999999999999888777777766654 66777888888888877654321 1233455678999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 042098 529 KMWDDSAKMRALMREKG 545 (566)
Q Consensus 529 g~~~~A~~~~~~~~~~g 545 (566)
|+-++|+.-|++..+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999998876
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.21 Score=29.20 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
+|..|...|.+.|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.54 Score=38.45 Aligned_cols=75 Identities=12% Similarity=-0.019 Sum_probs=51.6
Q ss_pred HHHhcCCHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChH
Q 042098 458 LYARAGHLSEAWDFVERMPE-KVDEIVLGAL-LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532 (566)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (566)
.-.+.++.+++..+++.+.- +|.......+ ...+...|++.+|.++|+.+.+..|..+..-..++.++...|+.+
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 34567788888888887653 3443333322 244667888888888888887777777777777777777777654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.19 E-value=10 Score=38.07 Aligned_cols=146 Identities=15% Similarity=0.125 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVD 457 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 457 (566)
|-..+.-.-..|+.+-|..++....+-..+-.|....+.+.+ +-..|+++.|..+++.+... . |+ ...-..-+.
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~ 408 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKIN 408 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHh
Confidence 333444444458888888777766654311223322222222 33467899999999988875 3 55 223333445
Q ss_pred HHHhcCCHHHHH---HHHHhCCC-CCCHHHHHHH----H-HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 458 LYARAGHLSEAW---DFVERMPE-KVDEIVLGAL----L-GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 458 ~~~~~g~~~~A~---~~~~~~~~-~~~~~~~~~l----~-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
..-+.|..+.+. +++..... +-+......+ . --+.-.++.+.|..++.++.+..|++...|..+.+.....
T Consensus 409 ~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 409 WERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 556777777777 44444332 1122222222 1 2234467889999999999999999988888888877766
Q ss_pred C
Q 042098 529 K 529 (566)
Q Consensus 529 g 529 (566)
+
T Consensus 489 ~ 489 (577)
T KOG1258|consen 489 P 489 (577)
T ss_pred C
Confidence 5
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.11 E-value=13 Score=38.99 Aligned_cols=116 Identities=11% Similarity=0.006 Sum_probs=53.6
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCC
Q 042098 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDD--HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200 (566)
Q Consensus 123 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 200 (566)
..-|..+++...++-|..+-+ ..+..++. .......+.+.+.|++++|...+-+-..--. -..+|.-|.....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PSEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hHHHHHHhcCHHH
Confidence 344444555555555554432 22222221 1222333344456777776655543322100 1223444455555
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHH
Q 042098 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244 (566)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 244 (566)
..+-...++.+.+.|+. +...-+.|+.+|.+.++.+.-.++..
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHh
Confidence 55555556666555544 33334456666666666655544433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.26 Score=28.22 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
+|..+...+...|++++|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555566666666777777777666666663
|
... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=7.5 Score=35.95 Aligned_cols=160 Identities=11% Similarity=0.015 Sum_probs=67.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCCh----hHHHHHHHHhHHCCCCCCHHHHHHHH
Q 042098 152 EDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA----KEAVELFGRMREEEFLPDEITLVSVL 227 (566)
Q Consensus 152 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~t~~~ll 227 (566)
+|..+....+..+...|..+....+..-+..+|...-...+.++.+.|+. .++...+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444455555555433333333333345555555556666666653 3455555555332 23434333444
Q ss_pred HHhcCCCCch--hHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcC-CHHH
Q 042098 228 GSCGDLGDLV--LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG-LSNE 304 (566)
Q Consensus 228 ~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~ 304 (566)
.+++..+... ............-.+++..+-...+.++.+.|+.+....+..-+..+|...-...+.++.+.+ +...
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH
Confidence 4443332111 011122222222222344444555666666665433333333334444444444444444432 1233
Q ss_pred HHHHHHHHH
Q 042098 305 AIMLFNRMK 313 (566)
Q Consensus 305 a~~~~~~m~ 313 (566)
+...+..+.
T Consensus 193 ~~~~L~~~L 201 (280)
T PRK09687 193 IREAFVAML 201 (280)
T ss_pred HHHHHHHHh
Confidence 444444444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.43 Score=38.23 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=36.3
Q ss_pred hcCCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 461 RAGHLSEAWDFVERMPE-KV---DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 461 ~~g~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
..++.+++..+++.+.- +| ...++... .+...|++++|.++|+...+..+..+..-..++.++...|+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 45666666666655532 22 23333222 344556666666666666655555454445555555555553
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.87 E-value=4.1 Score=33.95 Aligned_cols=135 Identities=10% Similarity=0.040 Sum_probs=72.5
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 042098 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183 (566)
Q Consensus 104 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 183 (566)
.+.++.+.+.+++|+...+..++..+.+.|.+..-.+ ++..++-+|.......+-.+. +....+.++=-.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455556667888888888888888888887654444 344455555444333332222 2223333332222222
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 042098 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248 (566)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 248 (566)
=...+..++..+...|++-+|+++.+...... . ..-..++.+....+|...-..+++...+
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~---~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD-S---VPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-c---CCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22356667778888888888888877652221 1 1123345555555554444444443333
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.67 E-value=7.1 Score=34.82 Aligned_cols=155 Identities=18% Similarity=0.170 Sum_probs=96.8
Q ss_pred CCHHHHHHHHccCC------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-------
Q 042098 359 GSIDDALKVFEDMP------VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH------- 425 (566)
Q Consensus 359 ~~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~------- 425 (566)
|++++|.+.|+.+. +-...+--.++.++.+.+++++|+..+++.....+ -.||. .|...|.+++.
T Consensus 48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP-~~~n~-dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP-THPNA-DYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-CCCCh-hHHHHHHHHHHhccCCcc
Confidence 55555555555443 11344566677888899999999999999987642 33443 34444444332
Q ss_pred hCcH---HHHHHHHHHhHHhc---CCCCChhH-----------H-HHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHH
Q 042098 426 AGLV---DEGRRLFDLMSSSF---GLIPKSEH-----------Y-SCMVDLYARAGHLSEAWDFVERMPEK-V----DEI 482 (566)
Q Consensus 426 ~g~~---~~A~~~~~~~~~~~---~~~p~~~~-----------~-~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~ 482 (566)
..|. ..|..-|+.++.++ ...||... + ..+.+-|.+.|.+..|..-+++|.+. | ...
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~e 205 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVRE 205 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHH
Confidence 2333 34555555555542 11222111 0 12446789999999999999998875 2 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
.+-.+..+|...|-.++|...-+-+....|+++
T Consensus 206 aL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 206 ALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 455566899999999999988666655556654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.53 E-value=6.5 Score=36.60 Aligned_cols=135 Identities=14% Similarity=0.200 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc--cC----ChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCC
Q 042098 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACAS--IG----ALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTN 375 (566)
Q Consensus 302 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 375 (566)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+++.|.+.-.-.. .++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-----------------s~~ 140 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-----------------SPE 140 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc-----------------Ccc
Confidence 45677889999999999888777654333322 11 22344555555554321110 234
Q ss_pred hhHHHHHHHHHHHcCC----hHHHHHHHHHHHhCCCCCCCC-H-HHHHHHHHHHhhhCc--HHHHHHHHHHhHHhcCCCC
Q 042098 376 EVSWNAMISALAFNGR----AHEALLLFERMSKEGGAARPN-D-VTFIGVLSACVHAGL--VDEGRRLFDLMSSSFGLIP 447 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~----~~~A~~~~~~m~~~g~~~~p~-~-~t~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~~p 447 (566)
-.++..++.. ..++ .+.+..+|+.+.+.| +..+ . .....++..+..... ..++.++++.+.+. |+++
T Consensus 141 D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~--f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~ki 215 (297)
T PF13170_consen 141 DYPFAALLAM--TSEDVEELAERMEQCYQKLADAG--FKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKI 215 (297)
T ss_pred chhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhC--CCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCcc
Confidence 4455555444 3333 456778888888877 5443 3 333444433322222 55888999999887 9888
Q ss_pred ChhHHHHHHHH
Q 042098 448 KSEHYSCMVDL 458 (566)
Q Consensus 448 ~~~~~~~l~~~ 458 (566)
....|..+.-.
T Consensus 216 k~~~yp~lGlL 226 (297)
T PF13170_consen 216 KYMHYPTLGLL 226 (297)
T ss_pred ccccccHHHHH
Confidence 87777655443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.38 E-value=20 Score=39.33 Aligned_cols=79 Identities=18% Similarity=0.035 Sum_probs=36.7
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPK--SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNT 497 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 497 (566)
+.+|...|++.+|..+..++.. .-+ ..+-..|+.-+...++.-+|-++..+....|... +..+++...+
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~ 1042 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEW 1042 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHH
Confidence 3445555555555555544421 111 1122445555555566666666555555433221 2234444455
Q ss_pred HHHHHHHHHH
Q 042098 498 DVSQRVMQLL 507 (566)
Q Consensus 498 ~~A~~~~~~~ 507 (566)
++|.++....
T Consensus 1043 ~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1043 EEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHhc
Confidence 5555554443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.17 E-value=31 Score=41.05 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=79.1
Q ss_pred HHHHccCChhHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhc-cCCCChhHHHHHHHHHHhcCChhH
Q 042098 127 ISCANLLALNHGVSVHSSVFKIGL--DEDDHVSHSLITMYARCGKLDSARKVFDE-IRERDLVSWNSMISGYSKMGYAKE 203 (566)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~ 203 (566)
.+--+.+.+..|...++.-..... ......+-.+...|+.-+++|....+... ...++. ++ -|.-....|++..
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl--~~-qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL--YQ-QILEHEASGNWAD 1467 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH--HH-HHHHHHhhccHHH
Confidence 344456677777777766311100 11122333444477777777776666653 333332 22 2334455678888
Q ss_pred HHHHHHHhHHCCCCCC-HHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 042098 204 AVELFGRMREEEFLPD-EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282 (566)
Q Consensus 204 a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 282 (566)
|...|+.+... .|+ ..+++-++......+.++...-..+-......+-....++.=+.+-.+.++++.......
T Consensus 1468 a~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 88888887653 333 455665555555555555544433322222211112222333344456666666666555
Q ss_pred CCChhHHHHH
Q 042098 283 NKDVVTWNAM 292 (566)
Q Consensus 283 ~~~~~~~~~l 292 (566)
..+..+|.+.
T Consensus 1543 ~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 DRNIEYWSVE 1552 (2382)
T ss_pred cccccchhHH
Confidence 3344444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.31 Score=27.85 Aligned_cols=30 Identities=7% Similarity=0.099 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 516 GNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
.++..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999987653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=3.5 Score=39.89 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=35.9
Q ss_pred hhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 042098 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQR 502 (566)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 502 (566)
..|+++.+.+.+...... +.....+..++++...+.|++++|...-+.|... .++.............|-++++..
T Consensus 335 ~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 335 HLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 445555555544443321 2222344444455555555555555544444332 222222222222333344455555
Q ss_pred HHHHHHhhC
Q 042098 503 VMQLLLEIE 511 (566)
Q Consensus 503 ~~~~~~~~~ 511 (566)
.+++...++
T Consensus 413 ~wk~~~~~~ 421 (831)
T PRK15180 413 YWKRVLLLN 421 (831)
T ss_pred HHHHHhccC
Confidence 555555444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.39 E-value=9.7 Score=33.63 Aligned_cols=196 Identities=13% Similarity=0.083 Sum_probs=98.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--hhHHHHHHHHHHhcC
Q 042098 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD--LVSWNSMISGYSKMG 199 (566)
Q Consensus 122 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~~ 199 (566)
|.....+|....++++|...+.+..+. .+-+...|.+ ...++.|.-+.+++..-+ +..|+-....|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 444455666667777777766555432 2323332221 233455555555555432 234666667777777
Q ss_pred ChhHHHHHHHHhHH--CCCCCCHH--HHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHH
Q 042098 200 YAKEAVELFGRMRE--EEFLPDEI--TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275 (566)
Q Consensus 200 ~~~~a~~~~~~m~~--~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 275 (566)
.++.|-..+++.-+ +++.|+.. .|..-+...-..++...|..+ +...-+.+.+...+++|-
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHHhhHHH
Confidence 77766666655421 23444322 222222222222222222222 334445555666666665
Q ss_pred HHHhcCCC--------CCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCCHhHHHHHHHHHhccCChhHHH
Q 042098 276 RVFDAMVN--------KDV-VTWNAMITAYAQNGLSNEAIMLFNRMKYAGV---NPDKITLIGVLSACASIGALDLGK 341 (566)
Q Consensus 276 ~~~~~~~~--------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~g~~~~a~ 341 (566)
..|.+-.. ++. ..|-..|-.+....++..|...+++--+.+- .-+..+...|+.+|-. |+.++..
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~~ 247 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEIK 247 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHHH
Confidence 54443311 111 1344555566667788888888887544331 2244566677776643 4444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.32 E-value=2.8 Score=35.58 Aligned_cols=90 Identities=9% Similarity=0.017 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchhHH---
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPEK-----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE--SSNSGNYV--- 519 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~--- 519 (566)
..+..+..-|++.|+.++|++.|.++.+. .-...+-.+++.+...+++..+.....++...- +.+....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34556666666666666666666666543 123344555666666667766666666665541 22221111
Q ss_pred -HHHHHHHhCCChHHHHHHHH
Q 042098 520 -ISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 520 -~l~~~~~~~g~~~~A~~~~~ 539 (566)
.-+-.+...|+|.+|.+.|-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHH
Confidence 12233455677777777664
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.06 E-value=2.8 Score=38.19 Aligned_cols=80 Identities=16% Similarity=0.275 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh----cCCCCChhH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS----FGLIPKSEH 451 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~p~~~~ 451 (566)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..++.+.+. .|+.|...+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d---p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD---PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 4568888999999999999999999999875 568889999999999999999999999988762 477777666
Q ss_pred HHHHHHH
Q 042098 452 YSCMVDL 458 (566)
Q Consensus 452 ~~~l~~~ 458 (566)
...+...
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 5554444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.05 E-value=3.5 Score=35.03 Aligned_cols=97 Identities=12% Similarity=0.096 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh-----
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND--VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS----- 449 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----- 449 (566)
..+..+...|++.|+.+.|++.|.++.+.. ..|.. ..+-.+++.+...+++..+.....+.........|.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~--~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYC--TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 468888999999999999999999998865 44443 446677888888899999888888776542221121
Q ss_pred -hHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 042098 450 -EHYSCMVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 450 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
.+|..| .+...+++.+|-+.|-....
T Consensus 115 lk~~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 115 LKVYEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHH--HHHHhchHHHHHHHHHccCc
Confidence 122222 22456788888888777654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=90.95 E-value=16 Score=35.28 Aligned_cols=180 Identities=12% Similarity=0.116 Sum_probs=118.0
Q ss_pred CCHHHHHHHHccCC----CCChhHHHHHHHHHH-HcCChHHHHHHHHHHHhCCCCCCCCHHH----HHHHHHHHhhhCcH
Q 042098 359 GSIDDALKVFEDMP----VTNEVSWNAMISALA-FNGRAHEALLLFERMSKEGGAARPNDVT----FIGVLSACVHAGLV 429 (566)
Q Consensus 359 ~~~~~A~~~~~~~~----~~~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~~g~~~~p~~~t----~~~ll~~~~~~g~~ 429 (566)
|+.+++.+.+..+. ++....|-.|+.+-. ...++.+|+++|+...- ..|.... ...-+-.....|+.
T Consensus 126 Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL----laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 126 GRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL----LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred CCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH----hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 67777777777765 455667878876644 45689999999999875 3465433 33334456788999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 430 DEGRRLFDLMSSSFGLIPKSEHY-SCMVDLYARAG---HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 430 ~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
+++..+-....+.|...|-..-| ..+...+.+.+ ..+.-..++..|...-....|..+.+.-...|+.+.|...-+
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99888887777776666664433 33334444333 455666667777644456788888899999999999999999
Q ss_pred HHHhhCCCC----chhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 506 LLLEIESSN----SGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 506 ~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
++..+...+ ......-+-+-.-..+++++.+.++.+-
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 999875221 1111111222334456777777766553
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.82 E-value=8.5 Score=31.98 Aligned_cols=130 Identities=17% Similarity=0.150 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChh-HHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV-TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE-HYS 453 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~ 453 (566)
...|..-+. +.+.+..++|+.-|..+.+.| ...-+. ..-.........|+...|...|+++... .-.|-.. -..
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg--~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~A 134 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTG--YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLA 134 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHH
Confidence 344555544 456778899999999999877 322111 1112233456789999999999998865 3333321 112
Q ss_pred HHH--HHHHhcCCHHHHHHHHHhCCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 454 CMV--DLYARAGHLSEAWDFVERMPEK--VD-EIVLGALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 454 ~l~--~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
.|= -.+...|.+++.....+.+... |- ...-..|.-+-.+.|++..|.+.|..+..
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 222 3456788899888888877653 22 23345677777889999999999998876
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.48 Score=27.09 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 516 GNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
.+|..++.+|...|++++|++.++++.+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999988754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.52 E-value=1.4 Score=40.13 Aligned_cols=104 Identities=15% Similarity=0.221 Sum_probs=74.7
Q ss_pred HHHHHHhCCCCChHHHHHhh----cCCCchhHHHHhhcCCC-CCc-----chHHHHHHHHHcCCCChhHHHHHHHHHHHC
Q 042098 44 HTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISR-PNE-----YAFNVMIRGLTTAWQKYSHSLKLYYQMKRL 113 (566)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~l~----~~g~~~~A~~~~~~~~~-~~~-----~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 113 (566)
.+.-+..|.+....+...++ ...+++.+...+-++++ |+. .+-.+.++.+.+ -++++++.++..=.+.
T Consensus 52 ~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk--y~pq~~i~~l~npIqY 129 (418)
T KOG4570|consen 52 MDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK--YDPQKAIYTLVNPIQY 129 (418)
T ss_pred chhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc--cChHHHHHHHhCcchh
Confidence 34445667777777777766 46778888887776643 221 122334455555 3688888888888889
Q ss_pred CCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhC
Q 042098 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149 (566)
Q Consensus 114 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 149 (566)
|+-||.++++.+|+.+.+.+++..|.++...|....
T Consensus 130 GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 130 GIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888887776653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.42 E-value=7.4 Score=30.66 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCC
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (566)
......++.+...|+-++-.+++.++.+.+ .|++.....+..+|.+.|+..++.+++.+.-++ |+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~---~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE---EINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 345666777788888888888888877643 677777788888888888888888888877766 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.17 E-value=22 Score=35.81 Aligned_cols=354 Identities=13% Similarity=0.040 Sum_probs=168.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChh-HHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 042098 153 DDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLV-SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229 (566)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 229 (566)
+...++.+|.---...+.+.+...++.+.. |... -|......=.+.|..+.+.++|++-+.. ++-+...|...+..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 334455555444344445666666666654 3333 2344444555678888999999988763 65566666665554
Q ss_pred hc-CCCCchhHHHHHHHHHHh-CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHH---cC---
Q 042098 230 CG-DLGDLVLGKWVEGFVVKN-KMDL-NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ---NG--- 300 (566)
Q Consensus 230 ~~-~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~~--- 300 (566)
+. ..|+.+.....|+..... |.+. +...|...|..-..++++.....+++.+.+-....++..-.-|.+ ..
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 43 456777777777776653 3332 333556666666777777777777777766444444443333322 11
Q ss_pred ---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChh
Q 042098 301 ---LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV 377 (566)
Q Consensus 301 ---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 377 (566)
..+++.++-...... ......+ +.+..+-..+...+.+ .+..+++...+.+.
T Consensus 203 ~l~~~d~~~~l~~~~~~~-------------~~~~~~~--~~~e~~~~~v~~~~~~----s~~l~~~~~~l~~~------ 257 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAER-------------SKITHSQ--EPLEELEIGVKDSTDP----SKSLTEEKTILKRI------ 257 (577)
T ss_pred hhcCHHHHHHHhhhHHhh-------------hhccccc--ChhHHHHHHHhhccCc----cchhhHHHHHHHHH------
Confidence 122222222221110 0000000 0000000000000000 01111111111100
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCC-----CCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEG-----GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g-----~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 452 (566)
...--..+............+++-++.- +-.+++..+|...+.--...|+.+...-.|++..-- +..-...|
T Consensus 258 -~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efW 334 (577)
T KOG1258|consen 258 -VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFW 334 (577)
T ss_pred -HHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHH
Confidence 0000011111122222222233322210 001223456666666667777777777777766532 11113334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLG-ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
-..++-....|+.+-|..++.....- |+......+-. .+-..|+...|..+++.+.+.-|.....-..-+....+.|
T Consensus 335 iky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 335 IKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 44444444447777666666554331 22222222222 2334567777777777777666665555555666677777
Q ss_pred ChHHHH
Q 042098 530 MWDDSA 535 (566)
Q Consensus 530 ~~~~A~ 535 (566)
+.+.+.
T Consensus 415 ~~~~~~ 420 (577)
T KOG1258|consen 415 NLEDAN 420 (577)
T ss_pred chhhhh
Confidence 777776
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.8 Score=25.77 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=13.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
..++.+.|+.++|.+.|+++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34444455555555555555555444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.49 Score=38.65 Aligned_cols=83 Identities=4% Similarity=0.049 Sum_probs=40.8
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042098 90 IRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169 (566)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 169 (566)
|..+.+. +.+.....+++.+...+...+....+.++..|++.++.+...++++ ..+..-...++..+.+.|.
T Consensus 14 i~~~~~~-~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 14 ISAFEER-NQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp HHHCTTT-T-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHhC-CCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 4444444 5566666666666654444445555666666666655555555544 1111222334444555555
Q ss_pred HHHHHHHHhcc
Q 042098 170 LDSARKVFDEI 180 (566)
Q Consensus 170 ~~~A~~~~~~~ 180 (566)
+++|.-++..+
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555544444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.58 E-value=16 Score=33.25 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
+.....|..+|.+.+|.++-++++..+|-+...+..|...+...|+--.|.+-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444789999999999999999999999999999999999999999888888877764
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.49 E-value=1.4 Score=40.46 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=43.9
Q ss_pred HhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHH
Q 042098 423 CVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDV 499 (566)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 499 (566)
|.+.|.+++|+..+.... .+.| |+.++..-..+|.+.+++..|..=.+.... +.-...|.--+.+-...|...+
T Consensus 107 yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 444555555555554443 2233 444444444555555555444433333221 1112223333334444566677
Q ss_pred HHHHHHHHHhhCCCCch
Q 042098 500 SQRVMQLLLEIESSNSG 516 (566)
Q Consensus 500 A~~~~~~~~~~~p~~~~ 516 (566)
|.+-++..++++|.+..
T Consensus 184 AKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 184 AKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHhHHHHHhhCcccHH
Confidence 77777777777777543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.46 E-value=7.6 Score=31.39 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=23.3
Q ss_pred hCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 042098 426 AGLVDEGRRLFDLMSSSFGLIPKSE-HYSCMVDLYARAGHLSEAWDFVERMPEK 478 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 478 (566)
.++.+++..+++.+. -+.|+.. .-..-...+...|+|++|+++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555554 2244321 1111223344556666666666665544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.99 Score=27.14 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
+++.+...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 444455555555555555555555544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.39 E-value=6.5 Score=33.48 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=60.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-----HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 042098 383 ISALAFNGRAHEALLLFERMSKEGGAARPND-----VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMV 456 (566)
Q Consensus 383 i~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 456 (566)
..-+...|++++|..-|.+.+.. +++.. ..|..=..++.+.+.++.|+.-....++ +.|+ ......-.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~---cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRA 175 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES---CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRA 175 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh---CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHH
Confidence 34577889999999999988875 33332 2233334466777888888877666553 4554 23333445
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC
Q 042098 457 DLYARAGHLSEAWDFVERMPEK 478 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~ 478 (566)
.+|.+...+++|+.=|.++.+.
T Consensus 176 eayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHh
Confidence 6788888888888888887653
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.31 E-value=5.2 Score=29.78 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 392 ~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
.-+..+-++.+.... +-|++......+++|.+.+++..|.++|+.++.+.| +....|..++.-
T Consensus 26 ~we~rrglN~l~~~D--lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 26 GWELRRGLNNLFGYD--LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHHTTSS--B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHHhccc--cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 346667777887777 899999999999999999999999999998887633 333477776653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.61 Score=24.84 Aligned_cols=24 Identities=4% Similarity=-0.000 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHH
Q 042098 516 GNYVISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~ 539 (566)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355677788888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.13 E-value=0.99 Score=25.69 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 516 GNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988764
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.41 E-value=1 Score=27.13 Aligned_cols=28 Identities=4% Similarity=0.038 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 516 GNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.++..|+.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678999999999999999999998864
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.28 E-value=11 Score=37.86 Aligned_cols=146 Identities=16% Similarity=0.111 Sum_probs=83.7
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHH
Q 042098 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438 (566)
Q Consensus 359 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 438 (566)
++++.|..++-.++ ...-+.++..+-+.|-.++|+++ .+|+.-- .....+.|+++.|.++..+
T Consensus 600 rd~~~a~~vLp~I~---k~~rt~va~Fle~~g~~e~AL~~-----------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 600 RDLEVADGVLPTIP---KEIRTKVAHFLESQGMKEQALEL-----------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred ccccccccccccCc---hhhhhhHHhHhhhccchHhhhhc-----------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 55555555554444 22345566666667766666543 2332111 1223456777777776644
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 042098 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518 (566)
Q Consensus 439 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (566)
.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+....+-....+.+..|.
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~--- 726 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL--- 726 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch---
Confidence 32 35567888888888888888888887765 344555555566665555555555554444432
Q ss_pred HHHHHHHHhCCChHHHHHHHH
Q 042098 519 VISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~ 539 (566)
...+|...|+++++.+++-
T Consensus 727 --AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 727 --AFLAYFLSGDYEECLELLI 745 (794)
T ss_pred --HHHHHHHcCCHHHHHHHHH
Confidence 2234555666666666554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.03 E-value=5.5 Score=29.31 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 042098 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457 (566)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 457 (566)
+.-++.+-++.+.... .-|++......+++|.+.+++..|.++|+..+.+.|. +...|..++.
T Consensus 22 D~we~rr~mN~l~~~D--lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYD--LVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccc--cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 4456667777777777 8899999999999999999999999999887755332 4446666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.86 E-value=2.3 Score=36.58 Aligned_cols=64 Identities=8% Similarity=-0.007 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVER-MPEKVD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
+.+.-++.+.+.+.+.+|+...+. ++.+|. ...-..++..++-.|++++|..-++-.-++.|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 345556777888888888886654 455554 4455667788888899999888888888887765
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.86 E-value=26 Score=33.61 Aligned_cols=68 Identities=6% Similarity=-0.011 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES----SNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
....+|..+...+.+.|.++.|...+.++...++ ..+.+...-++.+...|+.++|.+.++...+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4567888899999999999999999999988652 2567777788999999999999999988887333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.47 E-value=4.2 Score=37.11 Aligned_cols=63 Identities=17% Similarity=0.190 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
..+.+-.+|.+.++++.|.+..+.++.+.|+++.-+..-+-+|.+.|.+..|..-++...+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 345566788888999999999999999999988888888888999999999988888776653
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.44 E-value=16 Score=30.55 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (566)
..+++.+...|++-+|.++.+.....+......++.+-.+.++..-=..+++-..+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666777777777777665444334444555555555554444444443333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.44 E-value=1.5 Score=40.28 Aligned_cols=88 Identities=14% Similarity=0.025 Sum_probs=73.0
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHH
Q 042098 457 DLYARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (566)
+-|.+.|.+++|+..|.....- | +++++..-..+|.+...+..|+.--..++.++.....+|..-+.+-...|+..+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4688999999999999886653 5 7888888888999999999999998999888877777888888888888888888
Q ss_pred HHHHHHHHhC
Q 042098 535 AKMRALMREK 544 (566)
Q Consensus 535 ~~~~~~~~~~ 544 (566)
.+-.+...+.
T Consensus 185 KkD~E~vL~L 194 (536)
T KOG4648|consen 185 KKDCETVLAL 194 (536)
T ss_pred HHhHHHHHhh
Confidence 8877665443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.05 E-value=0.81 Score=25.75 Aligned_cols=29 Identities=7% Similarity=0.093 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 517 NYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
++..++.++.+.|++++|.++++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46678999999999999999999998753
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.96 E-value=0.87 Score=26.19 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=15.9
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHH
Q 042098 446 IPK-SEHYSCMVDLYARAGHLSEAW 469 (566)
Q Consensus 446 ~p~-~~~~~~l~~~~~~~g~~~~A~ 469 (566)
.|+ ...|..+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 444 566777777777777777664
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.71 E-value=25 Score=32.21 Aligned_cols=112 Identities=14% Similarity=0.133 Sum_probs=64.6
Q ss_pred CChhHHHHHHHHHHH-CCCCCCcccHHHHHHHHHc-cC-ChhHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHH
Q 042098 98 QKYSHSLKLYYQMKR-LGLKPDNFTYPFVFISCAN-LL-ALNHGVSVHSSVFK-IGLDEDDHVSHSLITMYARCGKLDSA 173 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~~~~~~A 173 (566)
....+|+.+|+.... ..+-.|..+...+++.... .+ ....--++.+.+.. .|-.++..+...++..+++.++++.-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 334555555553222 2244455566666655544 11 22222333333332 23456666777777888888888888
Q ss_pred HHHHhccCC-----CChhHHHHHHHHHHhcCChhHHHHHHH
Q 042098 174 RKVFDEIRE-----RDLVSWNSMISGYSKMGYAKEAVELFG 209 (566)
Q Consensus 174 ~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (566)
.++++.... .|...|..+|+.....|+..-...+.+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 777776543 467778888888888887655444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.52 E-value=22 Score=31.18 Aligned_cols=201 Identities=16% Similarity=0.093 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHH
Q 042098 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDAL 365 (566)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~ 365 (566)
..+......+...+.+..+...+...... ........+..........+....+...+.........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 127 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD------------ 127 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC------------
Confidence 45555566666667777666666665542 12223333444444444444444444444443332211
Q ss_pred HHHccCCCCChhHHHHHHH-HHHHcCChHHHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 366 KVFEDMPVTNEVSWNAMIS-ALAFNGRAHEALLLFERMSKEGGAA--RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 366 ~~~~~~~~~~~~~~~~li~-~~~~~~~~~~A~~~~~~m~~~g~~~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
+......... .+...|+++.|...+.+..... . ......+......+...++.+.+...+......
T Consensus 128 ---------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 128 ---------PDLAEALLALGALYELGDYEEALELYEKALELD--PELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred ---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 1111222222 6788999999999999986532 1 123344444444567788999999999888764
Q ss_pred cCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 443 FGLIPK--SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 443 ~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
.++ ...+..+...+...+++++|...+...... |+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 197 ---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 ---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ---CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 333 567888888888999999999999887764 43 445555555555777899999999999998876
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.36 E-value=1.5 Score=26.95 Aligned_cols=28 Identities=7% Similarity=0.146 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 519 VISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
..|+.+|...|+.+.|++++++....|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4578899999999999999998886543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.19 E-value=48 Score=35.87 Aligned_cols=127 Identities=12% Similarity=0.156 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-C-C-CHhHHHHHHHHHhccCCh--hHHHHHHHHHHHhCCCCccccCCHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGV-N-P-DKITLIGVLSACASIGAL--DLGKWVDKYASQRGLRHDIFCGSID 362 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~-p-~~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~~ 362 (566)
-|..|+..|...|..++|+++|.+..+..- . + -...+-.++.-+.+.+.. +....+-....+ .+.+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~---------~~p~ 576 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLN---------KNPE 576 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhc---------cCch
Confidence 477788888888888888888888766320 0 0 011222344444444444 444444444433 2333
Q ss_pred HHHHHHccCCCCChhHHH-HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh
Q 042098 363 DALKVFEDMPVTNEVSWN-AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425 (566)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~ 425 (566)
...++|..-......+.+ .-+-.|+.....+-+..+++.+.... -.++..-.+.++..|+.
T Consensus 577 ~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~--~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 577 AGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDN--RLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhc--cccchHHHHHHHHHHHH
Confidence 444444431100001111 12334566778888999999988765 55677777777777664
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.03 E-value=49 Score=34.79 Aligned_cols=220 Identities=11% Similarity=0.050 Sum_probs=97.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCC-
Q 042098 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP- 372 (566)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~- 372 (566)
..+.-.|+++.|++.+-+ ..+...+.+.+...+..+.-.+-.+... ..+. ..-.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~ll--------------------s~~~~ 320 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLL--------------------SVDPG 320 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-----------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---ccee--------------------eecCC
Confidence 445668999999999887 3334556667666665544332211110 0000 0000
Q ss_pred CCChhHHHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCCCHH-HHHH-HHHHHhhhCcHHHHH-----------HHH
Q 042098 373 VTNEVSWNAMISALAF---NGRAHEALLLFERMSKEGGAARPNDV-TFIG-VLSACVHAGLVDEGR-----------RLF 436 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~~~p~~~-t~~~-ll~~~~~~g~~~~A~-----------~~~ 436 (566)
.|...-+..||..|.+ ..++.+|.++|--+.... .|+.. .+.. +-+.....++++.-. -++
T Consensus 321 ~~~~ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~~---~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i 397 (613)
T PF04097_consen 321 DPPPLNFARLIGQYTRSFEITDPREALQYLYLICLFK---DPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLI 397 (613)
T ss_dssp ------HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS----SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HH
T ss_pred CCCCcCHHHHHHHHHHHHhccCHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCcccccee
Confidence 1112447788888886 357788888887776543 13322 2222 212222222211111 112
Q ss_pred HHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH-hcCC-----------HHH
Q 042098 437 DLMSSSFGLIPKS----EHYSCMVDLYARAGHLSEAWDFVERMPEKV-DEIVLGALLGACQ-KQKN-----------TDV 499 (566)
Q Consensus 437 ~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~-~~~~-----------~~~ 499 (566)
++-.+..++..+. .+......-+...|++++|+.+|.-..+-. -....+.++.-.. .... ...
T Consensus 398 ~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~l 477 (613)
T PF04097_consen 398 ERRLSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIEL 477 (613)
T ss_dssp HHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHH
T ss_pred eccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHH
Confidence 2211111233222 233344455678899999999999887421 1233344443222 2222 334
Q ss_pred HHHHHHHHHhh-------CCCCchhHHHHHH-----HHHhCCChHHHHHHHHHH
Q 042098 500 SQRVMQLLLEI-------ESSNSGNYVISSK-----IFANLKMWDDSAKMRALM 541 (566)
Q Consensus 500 A~~~~~~~~~~-------~p~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~ 541 (566)
|..+.+..... .+.+..++..|.. -+.+.|+|++|.+.++++
T Consensus 478 a~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 478 AKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 44444433221 1222334444433 367899999998877654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=86.01 E-value=29 Score=32.15 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=10.8
Q ss_pred HHHHHhCCChHHHHHHHHH
Q 042098 522 SKIFANLKMWDDSAKMRAL 540 (566)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~ 540 (566)
+..+++.++|++|.+.++.
T Consensus 253 ~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHhhcCHHHHHHHHHH
Confidence 3445556666666665553
|
It is also involved in sporulation []. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=85.57 E-value=3.1 Score=26.93 Aligned_cols=34 Identities=26% Similarity=0.235 Sum_probs=26.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
+.-++.+.|+++.|.+..+.+++.+|+|..+-..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4567889999999999999999999998765443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=85.54 E-value=3.7 Score=30.21 Aligned_cols=39 Identities=3% Similarity=-0.012 Sum_probs=17.3
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 505 QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 505 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
++.++.+|+|......++..+...|++++|.+.+-.+.+
T Consensus 12 ~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 12 EAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344444444444444455555555555444444443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.49 E-value=0.56 Score=38.32 Aligned_cols=85 Identities=12% Similarity=0.175 Sum_probs=63.6
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhH
Q 042098 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203 (566)
Q Consensus 124 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 203 (566)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .....++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46777778889999999999999877777888999999999999888888888884433 333455666666777777
Q ss_pred HHHHHHHh
Q 042098 204 AVELFGRM 211 (566)
Q Consensus 204 a~~~~~~m 211 (566)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77766655
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=84.91 E-value=6.8 Score=36.65 Aligned_cols=156 Identities=11% Similarity=0.022 Sum_probs=98.1
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh-cCCCCC---hhHHHHHHHHHHhcC
Q 042098 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS-FGLIPK---SEHYSCMVDLYARAG 463 (566)
Q Consensus 388 ~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~p~---~~~~~~l~~~~~~~g 463 (566)
...+.++|+..+.+-...-....-.-.++..+..+.+..|.++++...--.-... ...... -..|..+.+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665544321001123356777777888888887766442211111 011111 345666777777777
Q ss_pred CHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC----CchhHHHHHHHHHhCCC
Q 042098 464 HLSEAWDFVERMPEKV-------DEIVLGALLGACQKQKNTDVSQRVMQLLLEIE--SS----NSGNYVISSKIFANLKM 530 (566)
Q Consensus 464 ~~~~A~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~ 530 (566)
++.+++.+-..-...| ......++..++...+.++++++.|+.+.+.- .+ .-.++..|+..|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 8888887766544321 11233446677888889999999999998863 22 24688899999999999
Q ss_pred hHHHHHHHHHHHh
Q 042098 531 WDDSAKMRALMRE 543 (566)
Q Consensus 531 ~~~A~~~~~~~~~ 543 (566)
+++|.-...++.+
T Consensus 178 ~~Kal~f~~kA~~ 190 (518)
T KOG1941|consen 178 YEKALFFPCKAAE 190 (518)
T ss_pred hhHHhhhhHhHHH
Confidence 9999887766543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.86 E-value=42 Score=32.98 Aligned_cols=123 Identities=12% Similarity=0.022 Sum_probs=76.3
Q ss_pred HHccCChhHHHH-HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHH
Q 042098 129 CANLLALNHGVS-VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEA 204 (566)
Q Consensus 129 ~~~~~~~~~a~~-~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 204 (566)
....||+..|-+ ++.-+....-.|+.....+ ..+...|+++.+...+..... ....+-..+++...+.|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 344567666554 4444443333444444333 345667899998888876654 4566778888888889999999
Q ss_pred HHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCch
Q 042098 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254 (566)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (566)
..+-+-|....++ +..............|-++++...|.++....++.+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 9988888765444 333333333333345667777777777766555443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.75 E-value=58 Score=34.55 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
-++..+.+..+.+.+..+.+..... ++..|..++..+.+.+..+.-.+...+.++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 4556677777788888887777644 777888888888888766666555555544
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.94 E-value=32 Score=30.93 Aligned_cols=208 Identities=14% Similarity=0.187 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHhccCC-------CChhHHHHHHHHHHhcCChhHHHHHHHHh-----HHCCCCCCHHHHHHHHHHhcCC
Q 042098 166 RCGKLDSARKVFDEIRE-------RDLVSWNSMISGYSKMGYAKEAVELFGRM-----REEEFLPDEITLVSVLGSCGDL 233 (566)
Q Consensus 166 ~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m-----~~~~~~p~~~t~~~ll~~~~~~ 233 (566)
+..++++|+.-|+++.+ -.-.+...+|..+.+.|++++.++.|.+| ..---.-+....+.+++..+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Q ss_pred CCchhHHHHHHHHHH-----hCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC---------------CCCChhHHHHHH
Q 042098 234 GDLVLGKWVEGFVVK-----NKMDLNFYMGSALIDMYGKCGALVPARRVFDAM---------------VNKDVVTWNAMI 293 (566)
Q Consensus 234 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---------------~~~~~~~~~~li 293 (566)
.+.+....+++.-++ .+-..--.+-+.|...|...|.+.+..++++++ -..=...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-----hccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHH
Q 042098 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC-----ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVF 368 (566)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 368 (566)
..|..+.+-.+-..++++.....-.........+|+-| .+.|.++.|. .++-+|.+-|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah-----------------TDFFEAFKNY 261 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH-----------------TDFFEAFKNY 261 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH-----------------hHHHHHHhcc
Q ss_pred ccCCCCChhH---HHHHHHHHHHcC
Q 042098 369 EDMPVTNEVS---WNAMISALAFNG 390 (566)
Q Consensus 369 ~~~~~~~~~~---~~~li~~~~~~~ 390 (566)
++...|-..+ |-.|...+.+.|
T Consensus 262 DEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 262 DESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcC
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.86 E-value=8.4 Score=33.04 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=53.4
Q ss_pred HHhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCchhHHHHHHHHHhCCCh
Q 042098 459 YARAGHLSEAWDFVERMPEKV---DEIVLGALLGACQKQKNTDVSQRVMQLLLEIE----SSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~ 531 (566)
..+.|+ ++|.+.|-.+...| ++...-.|.. |....|.++++.++-+++++. ..|+.++..|+.++.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 345555 67777777776653 3444444444 444678899999999998874 34688999999999999999
Q ss_pred HHHH
Q 042098 532 DDSA 535 (566)
Q Consensus 532 ~~A~ 535 (566)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=83.73 E-value=2.3 Score=23.05 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=11.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 518 YVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
+..++.++...|++++|...++...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444455555554444443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.46 E-value=1.5 Score=36.54 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcC----C-------HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 482 IVLGALLGACQKQK----N-------TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 482 ~~~~~l~~~~~~~~----~-------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
.++..+..++...+ + +++|...|+++...+|.|. +. -......++|-++..++.+.+...
T Consensus 70 dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-----~Y--~ksLe~~~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 70 DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-----LY--RKSLEMAAKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-----HH--HHHHHHHHTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-----HH--HHHHHHHHhhHHHHHHHHHHHhhh
Confidence 45555555554433 2 4445555555555666652 22 122234456666666666665443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.39 E-value=38 Score=31.37 Aligned_cols=236 Identities=12% Similarity=-0.009 Sum_probs=127.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCH----HHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 042098 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS----NEAIMLFNRMKYAGVNPDKITLIGVLS 329 (566)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~ 329 (566)
+..+....+..+...|..+....+..-...+|...-...+.++.+.|+. .++...+..+... .|+...-...+.
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~ 113 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN 113 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 4444445555555555443333333333445666666666677777653 4566667666433 344444444455
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHcc-CCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 042098 330 ACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFED-MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408 (566)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 408 (566)
++...+..... ....+...+.. +..++..+-...+.++.+.++ +.+...+-.+.+.
T Consensus 114 aLG~~~~~~~~-------------------~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d--- 170 (280)
T PRK09687 114 ATGHRCKKNPL-------------------YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD--- 170 (280)
T ss_pred HHhcccccccc-------------------cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---
Confidence 54443321100 00111111111 112355556667777777776 4566666666643
Q ss_pred CCCCHHHHHHHHHHHhhhC-cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 042098 409 ARPNDVTFIGVLSACVHAG-LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487 (566)
Q Consensus 409 ~~p~~~t~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 487 (566)
++...-...+.++...+ ....+...+..+.. .++..+-...+.++.+.|+ .+|+..+-+....++ .....
T Consensus 171 --~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~--~~~~a 241 (280)
T PRK09687 171 --PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT--VGDLI 241 (280)
T ss_pred --CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc--hHHHH
Confidence 34444444445555432 23455555555543 4566677778888888888 456665555554444 23456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (566)
+.++...|+. +|...+..+.+..| |..+-....+++
T Consensus 242 ~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 242 IEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred HHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 7788888884 68888888887666 444444443433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.04 E-value=30 Score=35.02 Aligned_cols=130 Identities=17% Similarity=0.086 Sum_probs=66.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChh
Q 042098 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202 (566)
Q Consensus 123 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (566)
+.+...+.++|..++|+++ .+|+.. -.....+.|+++.|.++..+.. +..-|..|.++....+++.
T Consensus 618 t~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~ 683 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELP 683 (794)
T ss_pred hhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccch
Confidence 3445555555555555553 222221 1222345567777766654432 4556777777777777777
Q ss_pred HHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 042098 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281 (566)
Q Consensus 203 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 281 (566)
.|.+.|.+... |..|+-.+...|+-+....+-....+.|.. |.-..+|...|+++++.+++..-
T Consensus 684 lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 684 LASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 77777765543 233444444445544433333333333322 22233444555555555555443
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.77 E-value=4 Score=35.85 Aligned_cols=60 Identities=13% Similarity=-0.029 Sum_probs=42.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
-+++...|++-++++.-..++...|.|..+|..-+.+....=+.++|..-|.+..+...+
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 355556677777777777777777777777777777777777777777777766665443
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=82.76 E-value=53 Score=32.54 Aligned_cols=195 Identities=12% Similarity=0.045 Sum_probs=83.6
Q ss_pred HHHCCCCCCccc--HHHHHHHHHccCChhHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHhccCCC--
Q 042098 110 MKRLGLKPDNFT--YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH--VSHSLITMYARCGKLDSARKVFDEIRER-- 183 (566)
Q Consensus 110 m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~~~~~-- 183 (566)
+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. ...+-+...+..|+.+.+..+++.-...
T Consensus 21 Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 96 (413)
T PHA02875 21 LLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADD 96 (413)
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccc
Confidence 334455544322 233344444555544 333334445444322 1122344555667777666666543321
Q ss_pred --ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHH--HHHHHHhcCCCCchhHHHHHHHHHHhCCCchHH--H
Q 042098 184 --DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL--VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY--M 257 (566)
Q Consensus 184 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~ 257 (566)
+..-. +.+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+.+..+ .+.|..++.. .
T Consensus 97 ~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~d~~ 167 (413)
T PHA02875 97 VFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDIEDCC 167 (413)
T ss_pred cccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCCCCC
Confidence 11111 222233344544 344444555555543211 1233333445555544433 3344332211 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 042098 258 GSALIDMYGKCGALVPARRVFDAMVNKDVV---TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321 (566)
Q Consensus 258 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 321 (566)
-.+-+...+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+ +.+-+.+.|..++.
T Consensus 168 g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 168 GCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 112333445567777666666654333221 1123333334555543 44445556666653
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.51 E-value=10 Score=28.04 Aligned_cols=48 Identities=8% Similarity=0.049 Sum_probs=33.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHH
Q 042098 99 KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146 (566)
Q Consensus 99 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 146 (566)
+.-++.+-++.+....+.|++....+.+++|.+.+|+..|.++++-.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334555556666666777777777777777777777777777777665
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.30 E-value=35 Score=30.14 Aligned_cols=21 Identities=5% Similarity=0.131 Sum_probs=13.3
Q ss_pred HHhhhCcHHHHHHHHHHhHHh
Q 042098 422 ACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~~ 442 (566)
.-...+++.+|+.+|++..+.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777766654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.08 E-value=13 Score=31.98 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc--CCCCChhHHHHHHHHHHhcCCHHHH
Q 042098 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF--GLIPKSEHYSCMVDLYARAGHLSEA 468 (566)
Q Consensus 393 ~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A 468 (566)
+.|.+.|-.+...+ . .+....-..+..|....+.+++.+++....+.. +-.+|+..+.+|++.|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~--~-l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTP--E-LETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCC--C-CCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 56777777776665 3 233333333444444567777777777666532 2245567777777777777777665
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=81.54 E-value=46 Score=34.96 Aligned_cols=88 Identities=18% Similarity=0.157 Sum_probs=38.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-
Q 042098 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR- 461 (566)
Q Consensus 383 i~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 461 (566)
...+.-.|+++.|.+++-+. .+ ...+.+.+.+.+..|.-.+-.+... ..+.....-.|.+--+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~--~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EF--NRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T---HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHhh--cc--CcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 34556688999999888772 22 3455665555554433221111111 2221110111122456677777764
Q ss_pred --cCCHHHHHHHHHhCCC
Q 042098 462 --AGHLSEAWDFVERMPE 477 (566)
Q Consensus 462 --~g~~~~A~~~~~~~~~ 477 (566)
..+..+|++++--+..
T Consensus 338 F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 338 FEITDPREALQYLYLICL 355 (613)
T ss_dssp TTTT-HHHHHHHHHGGGG
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 3567788887766654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.64 E-value=0.96 Score=41.67 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 042098 463 GHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540 (566)
Q Consensus 463 g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (566)
|.+++|++.|...... +....|.--.+++.+.++...|++=+..+++++|++..-|-.-..+..-.|+|++|...+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 4444444444444332 22222222334444445555555555555555555544444444455555555555555555
Q ss_pred HHhCCCc
Q 042098 541 MREKGVS 547 (566)
Q Consensus 541 ~~~~g~~ 547 (566)
..+.++.
T Consensus 208 a~kld~d 214 (377)
T KOG1308|consen 208 ACKLDYD 214 (377)
T ss_pred HHhcccc
Confidence 5444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.53 E-value=33 Score=28.71 Aligned_cols=130 Identities=9% Similarity=-0.001 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHH--
Q 042098 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE-HYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGAL-- 487 (566)
Q Consensus 412 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l-- 487 (566)
...+|...++ +.+.+..++|...|..+.+. |...-+. .--.........|+...|...|+++-.. +.+....-+
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 3344444443 34556677777777777665 4433322 1223345566777888888888777543 222222111
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHhh-CCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 488 ---LGACQKQKNTDVSQRVMQLLLEI-ESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 488 ---~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
...+...|.++....-.+.+-.- +|--.+.-..|+-+-.+.|++.+|.+.|+++..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 13345666666665554444322 244445556677777778888888888777654
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=80.24 E-value=89 Score=33.53 Aligned_cols=165 Identities=13% Similarity=0.020 Sum_probs=87.8
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHH---HHHHHH--HHhhhCcHH--HHHHHHHHhHHhcCCC
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT---FIGVLS--ACVHAGLVD--EGRRLFDLMSSSFGLI 446 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t---~~~ll~--~~~~~g~~~--~A~~~~~~~~~~~~~~ 446 (566)
+.+..+..+..+..-.|++++|..+.+...+.- -.-+... +..+.. .+...|... +....|......+...
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a--~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMA--RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 456677788888888999999999887765532 1223332 233322 255567433 3333343333321111
Q ss_pred CC-----hhHHHHHHHHHHhc-CCHHHHHHHHHhCCCC---CCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhhCCCC-
Q 042098 447 PK-----SEHYSCMVDLYARA-GHLSEAWDFVERMPEK---VDEIVLG--ALLGACQKQKNTDVSQRVMQLLLEIESSN- 514 (566)
Q Consensus 447 p~-----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~---~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~p~~- 514 (566)
.. ..++..+..++.+. +...++..-++-.... |-..... .|+......||.+.|...++++......+
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 11 23444555555551 1122222222222111 2222222 56688888999999999999988764222
Q ss_pred c-hhHH-----HHHHHHHhCCChHHHHHHHHH
Q 042098 515 S-GNYV-----ISSKIFANLKMWDDSAKMRAL 540 (566)
Q Consensus 515 ~-~~~~-----~l~~~~~~~g~~~~A~~~~~~ 540 (566)
+ ..|. .-.......|+.+.+...+.+
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2 2222 222334567888888887665
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=80.11 E-value=5 Score=22.18 Aligned_cols=30 Identities=7% Similarity=0.125 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 042098 495 KNTDVSQRVMQLLLEIESSNSGNYVISSKI 524 (566)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (566)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999889888888877654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 2e-09
Identities = 21/160 (13%), Positives = 50/160 (31%), Gaps = 9/160 (5%)
Query: 85 AFNVMIRGLTTAWQKYSHSLKLYYQ--MKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
F + R L + S + + ++ P + L+L+ +
Sbjct: 56 EFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPS 115
Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-------DLVSWNSMISGY 195
+ L + +L A + + L +N+++ G+
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
++ G KE V + +++ PD ++ + L G
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.6 bits (132), Expect = 3e-08
Identities = 23/156 (14%), Positives = 49/156 (31%), Gaps = 7/156 (4%)
Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
+ + ++ + A L R+ P E L +L L + + G
Sbjct: 59 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 118
Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-------DVVTWNAMITAYAQN 299
+ ++ A L A + + + +NA++ +A+
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
G E + + +K AG+ PD ++ L
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.7 bits (114), Expect = 5e-06
Identities = 23/188 (12%), Positives = 49/188 (26%), Gaps = 29/188 (15%)
Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
+ + + A ++ + L+ C L L +
Sbjct: 99 LQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL--------- 149
Query: 353 RHDIFCGSIDDALKVFEDMPVTNEV----SWNAMISALAFNGRAHEALLLFERMSKEGGA 408
L V ++ +NA++ A G E + + + G
Sbjct: 150 ------------LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-- 195
Query: 409 ARPNDVTFIGVLSACVHAGLVDEG-RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
P+ +++ L R + M S GL ++ + ++ RA L
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQM-SQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 468 AWDFVERM 475
Sbjct: 255 VHKVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 41.7 bits (96), Expect = 7e-04
Identities = 14/144 (9%), Positives = 41/144 (28%), Gaps = 11/144 (7%)
Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF--GLIPKSEH 451
+A ++ G + C+ + L + + +
Sbjct: 112 QAPSGQHSQAQLSG----QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDM 167
Query: 452 YSCMVDLYARAGHLSEAWDFVERMPE---KVDEIVLGALLGACQKQKNTDVSQRVMQLLL 508
Y+ ++ +AR G E + + + D + A L +Q + + L
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA--GTIERCLE 225
Query: 509 EIESSNSGNYVISSKIFANLKMWD 532
++ + + + + +
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDRA 249
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 73/537 (13%), Positives = 137/537 (25%), Gaps = 193/537 (35%)
Query: 12 LAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNF---LLIRIIDLKDF 68
L N P + E L LL Q+ N+ + + + +RI ++
Sbjct: 187 LNLKNCNSPETVLEMLQKLL-------------YQIDPNWTSRSDHSSNIKLRIHSIQA- 232
Query: 69 NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF-- 126
L + Y + L L L N +
Sbjct: 233 -ELRRLL--------------------KSKPYENCL--------LVL--LNVQNAKAWNA 261
Query: 127 --ISCANLLALNHGVSVHSSVF-KIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
+SC LL + V + H+S LD
Sbjct: 262 FNLSCKILL-----TTRFKQVTDFLSAATTTHIS------------LDHHSMTLTP---- 300
Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGR---MREEEFLPDEITLVS--VLGSCGDLGDLVL 238
E L + R ++ LP E+ + L + L
Sbjct: 301 ------------------DEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSIIAESIRDGL 341
Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA--RRVFDAMV--NKDV-------- 286
W + + N L + S+L L PA R++FD +
Sbjct: 342 ATW-DNWKHVNCDKLTTIIESSL-------NVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
+ W +I +M+ V++ ++ K +
Sbjct: 394 LIWFDVIK---------SDVMV------------------VVNKLHKYSLVE--KQPKES 424
Query: 347 ASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL----LFERM 402
+ I+ + E+ AL H +++ + +
Sbjct: 425 TI--SI-PSIYL----ELKVKLENEY------------AL------HRSIVDHYNIPKTF 459
Query: 403 SKEGGAARPND---VTFIGV-LSACVHAGLVDEGRRLF-D-------LMSSSFGLIPKSE 450
+ D + IG L H + R +F D + S
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV--LGALLGACQKQKNTDVSQRVMQ 505
+ + L ++ + ER+ V+ I+ L + K TD+ + +
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERL---VNAILDFLPKIEENLICSKYTDLLRIALM 573
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 566 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.53 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.48 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.48 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.42 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.37 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.35 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.31 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.29 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.27 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.22 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.19 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.19 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.15 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.14 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.13 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.11 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.09 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.08 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.08 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.05 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.03 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.03 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.95 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.95 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.94 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.93 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.92 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.87 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.83 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.82 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.82 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.8 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.8 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.8 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.79 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.76 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.74 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.7 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.69 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.68 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.68 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.67 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.66 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.66 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.64 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.64 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.63 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.63 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.61 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.61 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.6 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.59 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.57 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.56 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.56 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.56 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.53 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.53 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.53 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.53 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.52 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.5 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.49 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.49 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.48 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.47 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.46 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.46 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.45 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.44 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.44 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.42 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.41 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.4 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.35 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.34 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.32 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.3 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.3 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.28 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.27 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.26 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.26 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.24 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.24 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.23 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.22 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.21 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.21 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.19 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.18 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.16 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.16 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.15 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.13 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.12 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.09 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.09 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.08 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.08 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.06 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.04 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.02 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.97 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.94 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.94 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.94 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.91 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.91 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.9 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.88 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.87 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.85 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.8 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.78 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.73 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.59 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.56 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.53 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.43 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.43 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.4 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.36 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.24 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.24 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.2 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.19 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.14 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.1 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.03 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.01 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.84 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.82 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.53 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.52 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.5 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.47 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.29 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.15 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.61 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.56 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.33 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.99 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.9 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.63 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.59 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.92 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.11 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.83 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.71 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.48 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.09 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.16 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.9 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.6 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.33 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.4 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.01 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.5 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.08 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.76 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.43 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.85 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.84 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.44 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 85.71 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.25 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.96 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 84.84 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.71 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 84.3 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.87 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.5 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.28 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.17 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.01 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.93 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 81.36 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=352.55 Aligned_cols=472 Identities=7% Similarity=-0.056 Sum_probs=358.9
Q ss_pred cCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHH
Q 042098 64 DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 143 (566)
+.|.+..+...|+.++.+++..|+.++..+.+. |++++|+.+|++|.+ ..|+..++..++.+|.+.|++++|..+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQ-QQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCccCCCCCccccchHHHHHHHHHHHHHHHHc-cCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 678888899999998888999999999999999 999999999999985 46788999999999999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-------------------ChhHHHHHHHHHHhcCChhHH
Q 042098 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-------------------DLVSWNSMISGYSKMGYAKEA 204 (566)
Q Consensus 144 ~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a 204 (566)
.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 88643 678899999999999999999999999965433 478999999999999999999
Q ss_pred HHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHH--HH-HHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 042098 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK--WV-EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281 (566)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 281 (566)
+++|++|.+.+.. +...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++
T Consensus 220 ~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 220 KECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 9999999875322 3344444444333322221111 11 333333444444555556666666666677777776666
Q ss_pred CC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccc--
Q 042098 282 VN--KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357 (566)
Q Consensus 282 ~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-- 357 (566)
.+ ++..+|+.++..|.+.|++++|+.+|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+........
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 377 (597)
T 2xpi_A 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL 377 (597)
T ss_dssp TTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 55 566666666666667777777777776666543 2245566666666666666666666666666443221111
Q ss_pred --------cCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh
Q 042098 358 --------CGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426 (566)
Q Consensus 358 --------~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~ 426 (566)
.|++++|.+.|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHc
Confidence 567777777776553 4578899999999999999999999999999875 45789999999999999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCC--HHHHHHHHHHHHhcCCH
Q 042098 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-------KVD--EIVLGALLGACQKQKNT 497 (566)
Q Consensus 427 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~--~~~~~~l~~~~~~~~~~ 497 (566)
|++++|.++|+++.+. . +.+..+|..++.+|.+.|++++|+++|+++.. .|+ ..+|..++.+|.+.|++
T Consensus 455 g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 455 GNILLANEYLQSSYAL-F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp TCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 9999999999999875 2 33578999999999999999999999998843 466 78999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 498 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
++|.+.++++.+.+|+++.+|..++.+|.+.|++++|.+.++++.+....
T Consensus 533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999886543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=321.29 Aligned_cols=443 Identities=10% Similarity=0.003 Sum_probs=378.9
Q ss_pred CChHHHHHhh----cCCCchhHHHHhhcCC--CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 042098 54 KPNFLLIRII----DLKDFNYASLLFHQIS--RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127 (566)
Q Consensus 54 ~~~~~~~~l~----~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 127 (566)
++...++.++ +.|++++|..+|+++. .|+..++..++.+|.+. |++++|+.+|+.+... +++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCT-GDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHT-TCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHc-CcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 5566666666 7899999999999984 47888999999999999 9999999999998653 678899999999
Q ss_pred HHHccCChhHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhHHH
Q 042098 128 SCANLLALNHGVSVHSSVFKI---------------GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--R-DLVSWN 189 (566)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~ 189 (566)
++.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++|.++|+++.+ | +...+.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999853211 2233578999999999999999999999999864 3 223333
Q ss_pred H--------------------------------------HHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhc
Q 042098 190 S--------------------------------------MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231 (566)
Q Consensus 190 ~--------------------------------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 231 (566)
. ++..|.+.|++++|.++|+++.+. +++..++..++..+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 2 345566788899999999998764 578899999999999
Q ss_pred CCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHH
Q 042098 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIML 308 (566)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 308 (566)
+.|++++|..+++.+.+.++. +..++..++.++.+.|++++|..+++.+.+ .+..+|+.++..|.+.|++++|.++
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999987754 667788999999999999999999998843 4677899999999999999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHH
Q 042098 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAF 388 (566)
Q Consensus 309 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 388 (566)
|+++.+.. +.+..++..++.++.+.|++++|..+++.+.+.+. .+..+|+.++.+|.+
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------------~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ---------------------GTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT---------------------TCSHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------------cchHHHHHHHHHHHH
Confidence 99998752 33567899999999999999988888888776542 367899999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcC
Q 042098 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF---GLIPK--SEHYSCMVDLYARAG 463 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g 463 (566)
.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|
T Consensus 454 ~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALF---QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999999864 4578999999999999999999999999997652 55777 679999999999999
Q ss_pred CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 042098 464 HLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527 (566)
Q Consensus 464 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (566)
++++|++.++++.. ..+..+|..+..+|.+.|++++|.+.++++++.+|+++..+..++.+|..
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999864 24789999999999999999999999999999999999999999887753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-26 Score=223.56 Aligned_cols=372 Identities=12% Similarity=0.075 Sum_probs=250.5
Q ss_pred HHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 042098 93 LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172 (566)
Q Consensus 93 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 172 (566)
+.+. |++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...|.+.|++++
T Consensus 9 ~~~~-g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 9 EYQA-GDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 3444 56666666665555432 1123333444444455556666665555555542 3344455555555555555555
Q ss_pred HHHHHhccCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 042098 173 ARKVFDEIRE--R-DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249 (566)
Q Consensus 173 A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 249 (566)
|+..|+++.+ | +..+|..+..++.+.|++++|++.|+++.+ .
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------------~ 130 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-----------------------------------Y 130 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-----------------------------------H
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------------------h
Confidence 5555555432 2 233455555555555555555555555544 3
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 042098 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326 (566)
Q Consensus 250 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 326 (566)
.+. +...+..+...+...|++++|.+.|+++.+ | +..+|+.+...+.+.|++++|+..|+++.+.+ +.+...+..
T Consensus 131 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (388)
T 1w3b_A 131 NPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYIN 208 (388)
T ss_dssp CTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 322 222334455555555666666655555522 2 34566666666666777777777777666642 123445555
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 042098 327 VLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406 (566)
Q Consensus 327 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 406 (566)
+...+...|++++|...+....+... .+..++..+..++...|++++|...|+++.+.+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~p---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLSP---------------------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc---------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66666666666666666655554332 256788899999999999999999999999864
Q ss_pred CCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHH
Q 042098 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVL 484 (566)
Q Consensus 407 ~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 484 (566)
+.+..++..+...+.+.|++++|...++++.+. .+.+..++..+...+.+.|++++|++.++++... .+..++
T Consensus 268 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 342 (388)
T 1w3b_A 268 ---PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342 (388)
T ss_dssp ---SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345778999999999999999999999999875 2345788999999999999999999999998764 457789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCC
Q 042098 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (566)
..+..++.+.|++++|...++++++..|+++..+..++.++...|+
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999999999999999999999888764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-29 Score=246.96 Aligned_cols=213 Identities=13% Similarity=0.148 Sum_probs=110.6
Q ss_pred HHHHHHHhHHCCCCCCH-HHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 042098 204 AVELFGRMREEEFLPDE-ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282 (566)
Q Consensus 204 a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 282 (566)
+..+.+++++++..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 34444555555554433 245666666666666666666666666666666666667777666665542110
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHH
Q 042098 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSID 362 (566)
Q Consensus 283 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 362 (566)
.+.+.+++|.++|++|...|+.||..||+.+|.+|++.|++++|..+++.|.+.|+.
T Consensus 81 --------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~--------- 137 (501)
T 4g26_A 81 --------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ--------- 137 (501)
T ss_dssp --------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC---------
T ss_pred --------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------
Confidence 112234445555555555555555555555555555555555555555555555544
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
||..+|+++|.+|++.|++++|.++|++|.+.| +.||..||+.||.+|++.|+.++|.+++++|.+.
T Consensus 138 -----------Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G--~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 138 -----------PRLRSYGPALFGFCRKGDADKAYEVDAHMVESE--VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp -----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------CccceehHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 345555555555555555555555555555555 5555555555555555555555555555555554
Q ss_pred cCCCCChhHHHHHHHHHHh
Q 042098 443 FGLIPKSEHYSCMVDLYAR 461 (566)
Q Consensus 443 ~~~~p~~~~~~~l~~~~~~ 461 (566)
+..|+..||+.++..|+.
T Consensus 205 -g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 205 -VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp -TSSBCHHHHHHHHHHHHS
T ss_pred -CCCcCHHHHHHHHHHHhc
Confidence 555555555555555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-29 Score=246.29 Aligned_cols=185 Identities=15% Similarity=0.168 Sum_probs=173.1
Q ss_pred cchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC---------hhHHHHHHHHHHHhCCCCc
Q 042098 83 EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA---------LNHGVSVHSSVFKIGLDED 153 (566)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~ 153 (566)
...++.+|.+|++. |++++|+++|++|.+.|++||..||+.||.+|++.+. ++.|.++|++|.+.|+.||
T Consensus 26 e~~l~~~id~c~k~-G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 26 EALLKQKLDMCSKK-GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 34688899999999 9999999999999999999999999999999987654 6789999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC----CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 042098 154 DHVSHSLITMYARCGKLDSARKVFDEIRE----RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229 (566)
Q Consensus 154 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 229 (566)
..+|++||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999974 79999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Q 042098 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268 (566)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 268 (566)
|++.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-25 Score=216.48 Aligned_cols=355 Identities=12% Similarity=0.039 Sum_probs=272.6
Q ss_pred HHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhH
Q 042098 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKE 203 (566)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 203 (566)
..+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34445566666666666655542 22333444444555555555555555544332 233445555555555555555
Q ss_pred HHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 042098 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283 (566)
Q Consensus 204 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 283 (566)
|++.|+++ .+..+. +...+..+..++.+.|++++|.+.|+++.+
T Consensus 86 A~~~~~~a-----------------------------------l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 86 AIEHYRHA-----------------------------------LRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHH-----------------------------------HHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHH-----------------------------------HHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555554 443322 234567788888888999999888888743
Q ss_pred --C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCC
Q 042098 284 --K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS 360 (566)
Q Consensus 284 --~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (566)
| +...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+...
T Consensus 130 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------- 200 (388)
T 1w3b_A 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-------- 200 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--------
T ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------
Confidence 4 44567788888999999999999999998863 23467888888999999999999988888877543
Q ss_pred HHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhH
Q 042098 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS 440 (566)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 440 (566)
.+...|..+...+...|++++|...+++..... +.+..++..+...+...|++++|...++++.
T Consensus 201 -------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 201 -------------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS---PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp -------------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 257789999999999999999999999998854 3357889999999999999999999999998
Q ss_pred HhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 042098 441 SSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517 (566)
Q Consensus 441 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (566)
+. .|+ ..++..+..++.+.|++++|++.++++.. +.+..++..+...+.+.|++++|...++++++..|++..+
T Consensus 265 ~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T 1w3b_A 265 EL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp HT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred hh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 64 454 67899999999999999999999998865 3578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 518 YVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
+..++.+|.+.|++++|.+.++++.+...
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999987543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-24 Score=218.06 Aligned_cols=429 Identities=11% Similarity=-0.020 Sum_probs=285.6
Q ss_pred hHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 042098 85 AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMY 164 (566)
Q Consensus 85 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 164 (566)
.|......+.+. |++++|+..|+++.+.+ |+..++..+..++...|++++|.+.++.+.+.. +.+..++..+..++
T Consensus 8 ~~~~~g~~~~~~-g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRN-KKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHT-SCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-ccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 445555667777 88888888888887754 677777778888888888888888888887764 34556777777888
Q ss_pred HhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHH
Q 042098 165 ARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241 (566)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 241 (566)
.+.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-...............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 888888888887776643 23333333333333332222333322222211111111111100000000011111111
Q ss_pred HHHHHHHhCC---------CchHHHHHHHHHHHHh---cCCHHHHHHHHhcCCC----------------C-ChhHHHHH
Q 042098 242 VEGFVVKNKM---------DLNFYMGSALIDMYGK---CGALVPARRVFDAMVN----------------K-DVVTWNAM 292 (566)
Q Consensus 242 ~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~l 292 (566)
+...+..... +.+...+..+...+.. .|++++|...|+++.+ | +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1111111000 1123333334444443 7888888888777643 1 24467777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCC
Q 042098 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP 372 (566)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 372 (566)
...+...|++++|...++++.+.+ |+...+..+...+...|+++.|...++.+.+...
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------------------- 301 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-------------------- 301 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT--------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc--------------------
Confidence 888888899999999998888764 3366777778888888888888877777665432
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhH
Q 042098 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEH 451 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~ 451 (566)
.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .| +...
T Consensus 302 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 374 (514)
T 2gw1_A 302 -NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD---PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEV 374 (514)
T ss_dssp -TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC---SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHH
T ss_pred -CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHH
Confidence 256678888889999999999999999988764 335677888888888999999999999988865 33 4678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC----CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPEK----VD----EIVLGALLGACQK---QKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
+..+...|.+.|++++|.+.++++... ++ ...+..+...+.. .|++++|...++++++..|.++.++..
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 888889999999999999988887542 22 3378888888888 899999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 521 SSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
++.+|...|++++|.+.++++.+...
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 99999999999999999998887654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-21 Score=195.08 Aligned_cols=346 Identities=12% Similarity=-0.015 Sum_probs=234.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 042098 153 DDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229 (566)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 229 (566)
+...+..+...+.+.|++++|+.+|+.+.+ .+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344455555555555555555555555432 244455555555555555555555555554432 1123334444444
Q ss_pred hcCCCCchhHHHHHHHHHHhCCCchH---HHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 042098 230 CGDLGDLVLGKWVEGFVVKNKMDLNF---YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306 (566)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 306 (566)
+...|++++|...++.+.+..+. +. ..+..++..+... .+..+...+.+.|++++|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHH
Confidence 44444444444444444333221 11 2222222221100 1122244577888999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHH
Q 042098 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISAL 386 (566)
Q Consensus 307 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 386 (566)
..|+++.+.. +.+...+..+..++...|++++|..+++.+.+... .+..+|..+...|
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------------~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN---------------------DNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC---------------------SCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHH
Confidence 9999887753 33567778888888888888888888877766432 3678899999999
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHH------------HHHHhhhCcHHHHHHHHHHhHHhcCCCCC-----h
Q 042098 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGV------------LSACVHAGLVDEGRRLFDLMSSSFGLIPK-----S 449 (566)
Q Consensus 387 ~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~ 449 (566)
...|++++|+..|+++.... +.+...+..+ ...|...|++++|...|+.+.+. .|+ .
T Consensus 222 ~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~ 295 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKLD---QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTV 295 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHH
Confidence 99999999999999998754 2334444444 77899999999999999999875 455 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH-----
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS----- 522 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~----- 522 (566)
..+..+..++.+.|++++|+..++++.. +.+...|..+..+|...|++++|...++++++..|.++.++..++
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 4788899999999999999999999764 346889999999999999999999999999999999999999998
Q ss_pred -------HHHHhCC-----ChHHHHHHHHH-HHhCCCc
Q 042098 523 -------KIFANLK-----MWDDSAKMRAL-MREKGVS 547 (566)
Q Consensus 523 -------~~~~~~g-----~~~~A~~~~~~-~~~~g~~ 547 (566)
..|...| +.+++.+.+++ ..+..+.
T Consensus 376 ~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred hhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 4455566 66777888876 4444333
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-22 Score=205.13 Aligned_cols=425 Identities=11% Similarity=0.055 Sum_probs=310.1
Q ss_pred cchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042098 83 EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162 (566)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 162 (566)
...|..+...+.+. |++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+.+.. +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTA-KNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHT-TCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34567777788888 99999999999998864 3467788888888899999999999999998875 446778888889
Q ss_pred HHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHC------CCCCCHHHHHHHHHHhcCCCCc
Q 042098 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE------EFLPDEITLVSVLGSCGDLGDL 236 (566)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~~~~ 236 (566)
.+...|++++|...|+.+ ..+....+..+..+...+...+|...++++... ...|+.......+. ..+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----IFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH----TSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH----hcCh
Confidence 999999999999999744 323333333455566666677888888887542 23344444433332 2222
Q ss_pred hhHHHHHHHHHHhCCCch-HHHHHHHHHHHH--------hcCCHHHHHHHHhcCCC--CC--------hhHHHHHHHHHH
Q 042098 237 VLGKWVEGFVVKNKMDLN-FYMGSALIDMYG--------KCGALVPARRVFDAMVN--KD--------VVTWNAMITAYA 297 (566)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~--------~~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~ 297 (566)
+.+...+.... ...+. ......+...+. ..|++++|..+|+.+.+ |+ ..++..+...+.
T Consensus 177 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSS--NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCC--SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcc--ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 22211111100 00111 112222222222 23578899999988854 32 224666777888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChh
Q 042098 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV 377 (566)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 377 (566)
..|++++|...+++..+. .|+...+..+...+...|+++.|...+..+.+... .+..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------------~~~~ 311 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP---------------------EYPP 311 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT---------------------TCHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC---------------------CCHH
Confidence 999999999999999885 46677888888889999999999988888776543 2577
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMV 456 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 456 (566)
+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .|+ ...+..+.
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~ 385 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLN---PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFA 385 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHH
Confidence 89999999999999999999999998864 334678888999999999999999999999876 344 67888999
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCCchhH
Q 042098 457 DLYARAGHLSEAWDFVERMPEK--------VDEIVLGALLGACQKQ----------KNTDVSQRVMQLLLEIESSNSGNY 518 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~ 518 (566)
..+...|++++|++.++++... .....+......+... |++++|...++++++..|.++.++
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 465 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999987541 1222244445667777 999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 519 VISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
..++.+|...|++++|.+.++++.+...
T Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 466 IGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999887654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.5e-22 Score=200.87 Aligned_cols=435 Identities=8% Similarity=-0.069 Sum_probs=303.3
Q ss_pred HHHhhcCCCchhHHHHhhcCC--CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChh
Q 042098 59 LIRIIDLKDFNYASLLFHQIS--RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136 (566)
Q Consensus 59 ~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 136 (566)
...+.+.|++++|...|+++. .|+...|..+..++.+. |++++|+..++++.+.+ +.+..++..+..++...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSV-GDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHH-hhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence 445558999999999999983 48889999999999999 99999999999999874 336678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CChhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 042098 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE----RDLVSWNSMISGYSKMGYAKEAVELFGRMR 212 (566)
Q Consensus 137 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 212 (566)
+|...|+.+.+.+. ++......++..+........+.+.+..+.. ++...++.-...............+...+.
T Consensus 91 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 91 DAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 99999999998763 4444445555555443333333333322211 111111110001111111111111111111
Q ss_pred HCCCC--------CC-HHHHHHHHHHhc---CCCCchhHHHHHHHHHH-----h--CC------CchHHHHHHHHHHHHh
Q 042098 213 EEEFL--------PD-EITLVSVLGSCG---DLGDLVLGKWVEGFVVK-----N--KM------DLNFYMGSALIDMYGK 267 (566)
Q Consensus 213 ~~~~~--------p~-~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~--~~------~~~~~~~~~li~~~~~ 267 (566)
..... |+ ...+......+. ..|+++.|...++.+.+ . .+ +.+..++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 11110 22 223333333222 36778888888777776 2 11 2234566777888888
Q ss_pred cCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHH
Q 042098 268 CGALVPARRVFDAMVN--KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345 (566)
Q Consensus 268 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 345 (566)
.|++++|...|+++.+ |+...+..+...+...|++++|+..++++.... +.+...+..+...+...|+++.|...++
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888887632 346677778888888888888888888887753 2345667777777888888888887777
Q ss_pred HHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh
Q 042098 346 YASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425 (566)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~ 425 (566)
.+.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 329 ~~~~~~~~---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 329 KAKELDPE---------------------NIFPYIQLACLAYRENKFDDCETLFSEAKRKF---PEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHTCSS---------------------CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHH
T ss_pred HHHHhChh---------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---ccCHHHHHHHHHHHHH
Confidence 77664322 46678888999999999999999999998764 3456788888999999
Q ss_pred hCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 042098 426 AGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYAR---AGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKN 496 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 496 (566)
.|++++|...++.+.+...-.++ ...+..+...+.. .|++++|.+.++++.. ..+...+..+...+...|+
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 99999999999998765222222 3388899999999 9999999999998754 2467788889999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 497 TDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+++|...++++++..|.++..+..+
T Consensus 465 ~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 465 IDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999988877765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=9.7e-21 Score=189.24 Aligned_cols=376 Identities=12% Similarity=0.020 Sum_probs=215.6
Q ss_pred CcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 042098 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161 (566)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 161 (566)
+...|..+...+.+. |++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAA-GQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 344556666666666 66666666666666542 2345556666666666666666666666666653 22344555555
Q ss_pred HHHHhcCCHHHHHHHHhccCCC---Ch---hHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCC
Q 042098 162 TMYARCGKLDSARKVFDEIRER---DL---VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235 (566)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 235 (566)
..|.+.|++++|...|+.+.+. +. ..+..++..+... .+..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 5555556666655555555432 12 3344333321000 01111222344455
Q ss_pred chhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 042098 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRM 312 (566)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (566)
+++|...++.+.+..+. +..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555544322 344455666666666666666666666532 35667777777777888888888888777
Q ss_pred HHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCCh
Q 042098 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392 (566)
Q Consensus 313 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 392 (566)
... .|+.......+.... ....+..+...+...|++
T Consensus 238 ~~~--~p~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~g~~ 273 (450)
T 2y4t_A 238 LKL--DQDHKRCFAHYKQVK------------------------------------------KLNKLIESAEELIRDGRY 273 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHH------------------------------------------HHHHHHHHHHHHHHHTCH
T ss_pred HHh--CCChHHHHHHHHHHH------------------------------------------HHHHHHHHHHHHHHcCCH
Confidence 653 344333222211110 011233446677777788
Q ss_pred HHHHHHHHHHHhCCCCCCCC-----HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHH
Q 042098 393 HEALLLFERMSKEGGAARPN-----DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLS 466 (566)
Q Consensus 393 ~~A~~~~~~m~~~g~~~~p~-----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 466 (566)
++|...|+++.+.. |+ ...+..+...+.+.|++++|...++.+.+. .| +...+..+..+|...|+++
T Consensus 274 ~~A~~~~~~~l~~~----p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~ 346 (450)
T 2y4t_A 274 TDATSKYESVMKTE----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYD 346 (450)
T ss_dssp HHHHHHHHHHHHHC----CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHH
Confidence 88888887777643 43 345666777777778888888888777654 34 3667777777788888888
Q ss_pred HHHHHHHhCCCC-CC-HHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHhhCCCCc----------h
Q 042098 467 EAWDFVERMPEK-VD-EIVLGALLGA------------CQKQK-----NTDVSQRVMQL-LLEIESSNS----------G 516 (566)
Q Consensus 467 ~A~~~~~~~~~~-~~-~~~~~~l~~~------------~~~~~-----~~~~A~~~~~~-~~~~~p~~~----------~ 516 (566)
+|...++++... |+ ...+..+..+ |...| +.+++.+.+++ +++..|++. .
T Consensus 347 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~ 426 (450)
T 2y4t_A 347 EAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEK 426 (450)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHH
Confidence 888877776542 43 3444444422 33333 56777888886 666666542 2
Q ss_pred hHHHHHHHHHhCCChHHHH
Q 042098 517 NYVISSKIFANLKMWDDSA 535 (566)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~ 535 (566)
.+..+..+|...++.+++.
T Consensus 427 ~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 427 KFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHHHHhCCHHHHH
Confidence 4555666666666655443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-20 Score=187.86 Aligned_cols=428 Identities=10% Similarity=-0.024 Sum_probs=304.3
Q ss_pred HHHhhcCCCchhHHHHhhcCC---CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCh
Q 042098 59 LIRIIDLKDFNYASLLFHQIS---RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135 (566)
Q Consensus 59 ~~~l~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 135 (566)
...+.+.|++++|...|+.+. +.+...|..+...+.+. |++++|++.|+++.+.+ +.+..++..+..++...|++
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIST-GDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCH
Confidence 445558999999999999873 35678899999999999 99999999999998875 33677888899999999999
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC------ChhHHHHHHHHHHhcCChhHHHHHHH
Q 042098 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER------DLVSWNSMISGYSKMGYAKEAVELFG 209 (566)
Q Consensus 136 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (566)
++|...++.+ . ..|+. ....+..+...+....|...++.+... ........+..+....+.+.+...+.
T Consensus 110 ~~A~~~~~~~-~--~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 110 TDAMFDLSVL-S--LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HHHHHHHHHH-h--cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 9999999633 2 22322 222344555566677888888887652 11122344445556666666555544
Q ss_pred HhHHCCCCCCHHHHH-HHHHHhcCC--------CCchhHHHHHHHHHHhCCCch------HHHHHHHHHHHHhcCCHHHH
Q 042098 210 RMREEEFLPDEITLV-SVLGSCGDL--------GDLVLGKWVEGFVVKNKMDLN------FYMGSALIDMYGKCGALVPA 274 (566)
Q Consensus 210 ~m~~~~~~p~~~t~~-~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A 274 (566)
.... ..+....+. .+...+... |++++|..+++.+.+..+... ..++..+...+...|++++|
T Consensus 185 ~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 185 TSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 3322 222222222 222222222 367777777777776655432 22466677788888888888
Q ss_pred HHHHhcCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 042098 275 RRVFDAMV--NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352 (566)
Q Consensus 275 ~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 352 (566)
...|+... .|+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|+++.|...++.+.+...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 263 QVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 88888873 3556677788888888889999999988887753 23466777777888888888888888777776542
Q ss_pred CCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHH
Q 042098 353 RHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432 (566)
Q Consensus 353 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A 432 (566)
. +...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 342 ~---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 342 E---------------------NVYPYIQLACLLYKQGKFTESEAFFNETKLKF---PTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp T---------------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred C---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhCCHHHH
Confidence 2 46678899999999999999999999998864 34567888889999999999999
Q ss_pred HHHHHHhHHhcCCCCC----hhHHHHHHHHHHhc----------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 042098 433 RRLFDLMSSSFGLIPK----SEHYSCMVDLYARA----------GHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKN 496 (566)
Q Consensus 433 ~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 496 (566)
...++.+.+...-.++ ...+..+...+.+. |++++|+..+++... +.+...+..+...+...|+
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 9999998765211111 22345556778888 999999999998764 2467888899999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHH
Q 042098 497 TDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
+++|.+.++++++..|.++.....
T Consensus 478 ~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 478 IDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999999988766543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.6e-18 Score=161.81 Aligned_cols=312 Identities=12% Similarity=0.010 Sum_probs=217.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHH
Q 042098 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263 (566)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 263 (566)
|+..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+.+..+. +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34566777777888888888888888876642 223555555666666666666666666666555432 2344455555
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCh------hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCh
Q 042098 264 MYGKCGALVPARRVFDAMVNKDV------VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337 (566)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 337 (566)
++...|++++|...|+...+.++ ..+..+..... ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 55555555555555555433111 11111110000 00011123445555666
Q ss_pred hHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH
Q 042098 338 DLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417 (566)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~ 417 (566)
+.|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+..++.
T Consensus 137 ~~A~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~ 192 (359)
T 3ieg_A 137 TAAITFLDKILEVCV---------------------WDAELRELRAECFIKEGEPRKAISDLKAASKLK---SDNTEAFY 192 (359)
T ss_dssp HHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---SCCHHHHH
T ss_pred HHHHHHHHHHHHhCC---------------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 666555555544332 367789999999999999999999999999864 45778899
Q ss_pred HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHH------------HHHHHHHhcCCHHHHHHHHHhCCCC-CCH--
Q 042098 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYS------------CMVDLYARAGHLSEAWDFVERMPEK-VDE-- 481 (566)
Q Consensus 418 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-- 481 (566)
.+...+...|++++|...++...+. .|+ ...+. .+...+.+.|++++|.+.++++... |+.
T Consensus 193 ~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 269 (359)
T 3ieg_A 193 KISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE 269 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 9999999999999999999999875 444 33322 2367789999999999999987652 442
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 482 ---IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 482 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
..+..+..++...|++++|...++++++..|+++.++..++.+|...|++++|.+.++++.+....
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 234557789999999999999999999999999999999999999999999999999999887543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-18 Score=163.14 Aligned_cols=328 Identities=12% Similarity=-0.007 Sum_probs=242.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 042098 153 DDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229 (566)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 229 (566)
++..+..+...+...|++++|...|+.+.+ .+..++..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456778888999999999999999998764 467789999999999999999999999998742 2256788889999
Q ss_pred hcCCCCchhHHHHHHHHHHhCCC--chHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 042098 230 CGDLGDLVLGKWVEGFVVKNKMD--LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307 (566)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 307 (566)
+...|++++|...+..+.+..+. .+...+..+...+. ...+..+...+...|++++|+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------MQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------HHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999999999887651 13333333321111 0122334445556666666666
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHH
Q 042098 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALA 387 (566)
Q Consensus 308 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 387 (566)
.++++.+.. +.+...+..+...+...|+++.|...+..+.+.. +.+..++..+...+.
T Consensus 142 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 142 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK---------------------SDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------------SCCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHH
Confidence 666665542 2234455555555666666665555555544432 125667888888999
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCCCHHHHH------------HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh-----h
Q 042098 388 FNGRAHEALLLFERMSKEGGAARPNDVTFI------------GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS-----E 450 (566)
Q Consensus 388 ~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~------------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-----~ 450 (566)
..|++++|...+++..+.. +.+...+. .+...+...|++++|...++.+.+. .|+. .
T Consensus 200 ~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~ 273 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLKLD---QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVR 273 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC---ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHH
Confidence 9999999999999988754 22333332 2255688899999999999999876 3442 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE-K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
.+..+..++...|++++|++.+++... . .+...|..+...+...|++++|...++++++.+|+++..+..+..+....
T Consensus 274 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 274 SKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 355678899999999999999998865 2 46788999999999999999999999999999999999988887776543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-18 Score=164.36 Aligned_cols=354 Identities=10% Similarity=0.037 Sum_probs=166.2
Q ss_pred HHHhh-cCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhH
Q 042098 59 LIRII-DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137 (566)
Q Consensus 59 ~~~l~-~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 137 (566)
.+.|+ +.|++++|.+++++++.| .+|+.+..++.+. |++++|++.|.+. +|..+|..++.++...|++++
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~-g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQK-GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHc-CCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHH
Confidence 34455 789999999999999665 4999999999999 9999999999753 588899999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCC
Q 042098 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217 (566)
Q Consensus 138 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 217 (566)
|...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 99988887774 4567889999999999999999998886 478889999999999999999999999977
Q ss_pred CCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 042098 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297 (566)
Q Consensus 218 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 297 (566)
..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQ 218 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHH
Confidence 47899999999999999999999988 378899999999999999999988877765 45555557889999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCC--C--
Q 042098 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP--V-- 373 (566)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~-- 373 (566)
+.|++++|+.+++...... +-....|+-+-.++++-. + +++.+..+.|..-. +
T Consensus 219 k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p---------------------~k~~ehl~~~~~~ini~k~ 275 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P---------------------QKMREHLELFWSRVNIPKV 275 (449)
T ss_dssp HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H---------------------HHHHHHHHHHSTTSCHHHH
T ss_pred HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-H---------------------HHHHHHHHHHHHHhcCcHH
Confidence 9999999999999887654 344555666655555432 1 23333344443322 1
Q ss_pred ----CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh
Q 042098 374 ----TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449 (566)
Q Consensus 374 ----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 449 (566)
.+...|..+...|...++++.|.. .|.+. +|+...-..+.....+..+.+--.+...-.... .|
T Consensus 276 ~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h----~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~---~p-- 343 (449)
T 1b89_A 276 LRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNH----PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KP-- 343 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHS----TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG--
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhC----ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc---CH--
Confidence 246679999999999999998876 44443 233322233333444444444333333322322 23
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
...+.|+.++...=+...+.++|++...
T Consensus 344 ~~l~~ll~~l~~~ld~~r~v~~~~~~~~ 371 (449)
T 1b89_A 344 LLLNDLLMVLSPRLDHTRAVNYFSKVKQ 371 (449)
T ss_dssp GGHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHcCC
Confidence 3466677777666677777777766554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-16 Score=160.40 Aligned_cols=366 Identities=9% Similarity=-0.015 Sum_probs=241.5
Q ss_pred CcccHHHHHHHHHc----cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCC-CChhHH
Q 042098 118 DNFTYPFVFISCAN----LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYAR----CGKLDSARKVFDEIRE-RDLVSW 188 (566)
Q Consensus 118 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~ 188 (566)
++..+..+...+.. .+++++|...|+...+.| ++..+..|...|.. .++.++|...|+...+ .+...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44444455555544 556666666666665543 34455555555655 5666666666665543 244555
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcC----CCCchhHHHHHHHHHHhCCCchHHHHHH
Q 042098 189 NSMISGYSK----MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD----LGDLVLGKWVEGFVVKNKMDLNFYMGSA 260 (566)
Q Consensus 189 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 260 (566)
..|...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 555555655 566666666666665544 33444444444443 556667777776666654 3445556
Q ss_pred HHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042098 261 LIDMYGK----CGALVPARRVFDAMVN-KDVVTWNAMITAYAQ----NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331 (566)
Q Consensus 261 li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 331 (566)
|...|.. .++.++|.+.|++..+ .+..++..+...|.. .+++++|..+|++..+.| +...+..+-..+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 6666665 6777777777776533 355566666666665 677777777777776653 233333333333
Q ss_pred hc----cCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHc-----CChHHHHHHHHHH
Q 042098 332 AS----IGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFN-----GRAHEALLLFERM 402 (566)
Q Consensus 332 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m 402 (566)
.. .++.++|...++...+. .+...+..+...|... +++++|+.+|++.
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~-----------------------~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQ-----------------------GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTT-----------------------TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHc-----------------------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 33 44444444444444332 2455677777777777 8999999999999
Q ss_pred HhCCCCCCCCHHHHHHHHHHHhhhC---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhC
Q 042098 403 SKEGGAARPNDVTFIGVLSACVHAG---LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR----AGHLSEAWDFVERM 475 (566)
Q Consensus 403 ~~~g~~~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 475 (566)
.+.| +...+..+...|...| +.++|.+.|++..+. .++..+..|...|.. .+++++|++.|++.
T Consensus 323 ~~~~-----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 323 AEQG-----DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHTT-----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HhcC-----CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8876 3456666777776655 789999999988864 357788888899988 89999999999998
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHh
Q 042098 476 PEKVDEIVLGALLGACQK----QKNTDVSQRVMQLLLEIESS---NSGNYVISSKIFAN 527 (566)
Q Consensus 476 ~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 527 (566)
.+..+...+..+...|.. .++.++|...|+++.+.+|+ ++.....++.++..
T Consensus 394 ~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 394 AEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 777778888889988888 89999999999999999844 67677777665553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-17 Score=156.95 Aligned_cols=291 Identities=11% Similarity=-0.050 Sum_probs=186.8
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHH
Q 042098 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263 (566)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 263 (566)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...++.+.+..+. +..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 44455566666666677777777666665432 112333334444445555555555555555544322 2233344444
Q ss_pred HHHhcC-CHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHH
Q 042098 264 MYGKCG-ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342 (566)
Q Consensus 264 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 342 (566)
.+...| ++++|... |++..+.. +.+...+..+...+...|++++|..
T Consensus 99 ~~~~~~~~~~~A~~~-------------------------------~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 99 YYLMVGHKNEHARRY-------------------------------LSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp HHHHSCSCHHHHHHH-------------------------------HHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhhhhHHHHHHH-------------------------------HHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHH
Confidence 444444 44444444 44444332 1122333444444444444444444
Q ss_pred HHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 042098 343 VDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422 (566)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~ 422 (566)
.+..+.+... .+...+..+...|...|++++|...+++..+.. +.+...+..+...
T Consensus 147 ~~~~a~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~ 202 (330)
T 3hym_B 147 AYFTAAQLMK---------------------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PEDPFVMHEVGVV 202 (330)
T ss_dssp HHHHHHHHTT---------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHH
T ss_pred HHHHHHHhcc---------------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---CCChHHHHHHHHH
Confidence 4443333221 134456667888888999999999999988764 4557788888888
Q ss_pred HhhhCcHHHHHHHHHHhHHhcCC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHh
Q 042098 423 CVHAGLVDEGRRLFDLMSSSFGL-------IPKSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQK 493 (566)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 493 (566)
+...|++++|...+++..+...- .....++..+..+|...|++++|++.+++... ..+...+..+...+..
T Consensus 203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL 282 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 99999999999999888764211 22356888899999999999999999988754 2456788888899999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH-HhCCChH
Q 042098 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIF-ANLKMWD 532 (566)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 532 (566)
.|++++|.+.++++++..|+++..+..++.++ ...|+.+
T Consensus 283 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 283 MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred hccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999999999999888 4555543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-17 Score=157.00 Aligned_cols=265 Identities=12% Similarity=0.039 Sum_probs=221.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042098 254 NFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330 (566)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 330 (566)
+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 444556777888888999999999888743 245567778888999999999999999998853 2355677778888
Q ss_pred HhccC-ChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 042098 331 CASIG-ALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409 (566)
Q Consensus 331 ~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~ 409 (566)
+...| +++.|...+....+... .+...|..+...+...|++++|...++++.+..
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--- 155 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEK---------------------TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--- 155 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCT---------------------TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---
T ss_pred HHHhhhhHHHHHHHHHHHHHhCC---------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---
Confidence 88888 88888888777765432 356789999999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----------
Q 042098 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE----------- 477 (566)
Q Consensus 410 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------- 477 (566)
+.+...+..+...+...|++++|...+++..+. .|+ ...+..+...+...|++++|+..+++...
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 232 (330)
T 3hym_B 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232 (330)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTT
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccc
Confidence 334567777889999999999999999999854 454 67889999999999999999999987653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 478 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
......+..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.++++.+...
T Consensus 233 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 233578899999999999999999999999999999999999999999999999999999998876543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-15 Score=153.15 Aligned_cols=362 Identities=11% Similarity=0.026 Sum_probs=290.1
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCC-CChhHHHHHHHHHHh----cCChhHHHHHHH
Q 042098 139 VSVHSSVFKIGLDEDDHVSHSLITMYAR----CGKLDSARKVFDEIRE-RDLVSWNSMISGYSK----MGYAKEAVELFG 209 (566)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~ 209 (566)
...++...+. .++..+..+...|.. .+++++|...|+...+ .+...+..|...|.. .+++++|++.|+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4444444443 366777777888887 8999999999987754 467788888889998 899999999999
Q ss_pred HhHHCCCCCCHHHHHHHHHHhcC----CCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHh----cCCHHHHHHHHhcC
Q 042098 210 RMREEEFLPDEITLVSVLGSCGD----LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK----CGALVPARRVFDAM 281 (566)
Q Consensus 210 ~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~ 281 (566)
+..+.| +...+..+...+.. .+++++|...++...+.+ +...+..|...|.. .++.++|.+.|++.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 998765 45566666666666 789999999999998876 44556778888877 78999999999987
Q ss_pred CC-CChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----cCChhHHHHHHHHHHHhCC
Q 042098 282 VN-KDVVTWNAMITAYAQ----NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS----IGALDLGKWVDKYASQRGL 352 (566)
Q Consensus 282 ~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~ 352 (566)
.+ .+...+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|..+++...+.
T Consensus 178 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 252 (490)
T 2xm6_A 178 AEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-- 252 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--
T ss_pred HHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 44 467788888888888 899999999999998865 44555555555543 55556665555554443
Q ss_pred CCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh--
Q 042098 353 RHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAF----NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA-- 426 (566)
Q Consensus 353 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~-- 426 (566)
.+...+..+...|.. .+++++|+.+|++..+.| +...+..+...+...
T Consensus 253 ---------------------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~~~~ 306 (490)
T 2xm6_A 253 ---------------------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-----NSDGQYYLAHLYDKGAE 306 (490)
T ss_dssp ---------------------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHCBT
T ss_pred ---------------------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCC
Confidence 356677778888888 899999999999998766 455666777777776
Q ss_pred ---CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 042098 427 ---GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG---HLSEAWDFVERMPEKVDEIVLGALLGACQK----QKN 496 (566)
Q Consensus 427 ---g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 496 (566)
++.++|...+++..+. + +...+..+...|...| ++++|++.|++..+..+...+..+...+.. .++
T Consensus 307 g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 307 GVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp TBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC
Confidence 8999999999998875 3 4567778888888766 889999999998877888899999999998 899
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 042098 497 TDVSQRVMQLLLEIESSNSGNYVISSKIFAN----LKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 546 (566)
.++|...++++.+.+ ++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 383 ~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999999998854 57899999999998 8999999999999998874
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-15 Score=154.61 Aligned_cols=409 Identities=11% Similarity=0.055 Sum_probs=264.4
Q ss_pred CcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 042098 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161 (566)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 161 (566)
+...|..++. +.+. |++++|..+|+.+.+. .+-+...|...+..+.+.|+++.|..+|+.++... |+...|..++
T Consensus 12 ~~~~w~~l~~-~~~~-~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQN-QPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHS-SCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHh-CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 5667777777 4666 8888888888888765 23355567777777778888888888888877653 5666666666
Q ss_pred HHH-HhcCCHHHHHH----HHhccC-----C-CChhHHHHHHHHHHh---------cCChhHHHHHHHHhHHCCCCCCHH
Q 042098 162 TMY-ARCGKLDSARK----VFDEIR-----E-RDLVSWNSMISGYSK---------MGYAKEAVELFGRMREEEFLPDEI 221 (566)
Q Consensus 162 ~~~-~~~~~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~ 221 (566)
... ...|+.+.|.+ +|+... . .+...|...+....+ .|+++.|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 433 33466655544 554432 1 245566666665544 567777777777776521111112
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhc-------CC------CCC---
Q 042098 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA-------MV------NKD--- 285 (566)
Q Consensus 222 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~------~~~--- 285 (566)
.|..........|. .+...++. .+.+++..|..++.. +. .|+
T Consensus 167 ~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 22211111000000 00011111 123445556554443 11 111
Q ss_pred -----hhHHHHHHHHHHHc----CCH----HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc-------cCChh-------
Q 042098 286 -----VVTWNAMITAYAQN----GLS----NEAIMLFNRMKYAGVNPDKITLIGVLSACAS-------IGALD------- 338 (566)
Q Consensus 286 -----~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~g~~~------- 338 (566)
...|...+...... ++. ..+..+|++..... +-+...|......+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 23555555333222 222 47778888887752 2345566655555553 57765
Q ss_pred HHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-H-HHH
Q 042098 339 LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-D-VTF 416 (566)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~-~t~ 416 (566)
+|..+++...+. ..+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|
T Consensus 304 ~A~~~~~~Al~~--------------------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~ 359 (530)
T 2ooe_A 304 EAANIYERAIST--------------------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI----EDIDPTLVY 359 (530)
T ss_dssp HHHHHHHHHTTT--------------------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----SSSCHHHHH
T ss_pred HHHHHHHHHHHH--------------------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc----cccCchHHH
Confidence 555555544431 01236788999999999999999999999999985 354 3 578
Q ss_pred HHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH-HHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHH
Q 042098 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDL-YARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQ 492 (566)
Q Consensus 417 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~ 492 (566)
..++..+.+.|+.++|..+|++..+. .|+ ...|...+.. +...|++++|..+|++.... | +...|..++..+.
T Consensus 360 ~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 360 IQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 88888888999999999999998854 343 3333332222 34689999999999987653 4 5788999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCch----hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 493 KQKNTDVSQRVMQLLLEIESSNSG----NYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
+.|+.++|..+|++++...|.++. .|..++......|+.+.+.++.+++.+.-
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999998776655 78888889999999999999999887643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=161.43 Aligned_cols=241 Identities=12% Similarity=-0.028 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 042098 256 YMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332 (566)
Q Consensus 256 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 332 (566)
.++..+..++...|++++|...|+++.+ .+..++..+...+...|++++|+..++++.... |+........
T Consensus 99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~---- 172 (368)
T 1fch_A 99 EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA---- 172 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC------
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH----
Confidence 3445556666666666666666665522 355677777788888888888888888887753 3221110000
Q ss_pred ccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC
Q 042098 333 SIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412 (566)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~ 412 (566)
+..... . .....+..+... ...|++++|...++++.+..+ ..++
T Consensus 173 --~~~~~~-------------------------------~-~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~p-~~~~ 216 (368)
T 1fch_A 173 --EEGAGG-------------------------------A-GLGPSKRILGSL-LSDSLFLEVKELFLAAVRLDP-TSID 216 (368)
T ss_dssp -----------------------------------------------CTTHHH-HHHHHHHHHHHHHHHHHHHST-TSCC
T ss_pred --HHHhhh-------------------------------h-cccHHHHHHHHH-hhcccHHHHHHHHHHHHHhCc-Cccc
Confidence 000000 0 000111222233 378999999999999998651 1115
Q ss_pred HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 042098 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLG 489 (566)
Q Consensus 413 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 489 (566)
..++..+...+...|++++|...++++... .|+ ..++..+...+.+.|++++|+..++++.. +.+...+..+..
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 293 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 293 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 888999999999999999999999999875 444 67899999999999999999999998764 346788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCC-----------chhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 490 ACQKQKNTDVSQRVMQLLLEIESSN-----------SGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
++.+.|++++|...++++++..|.+ ..+|..++.+|...|++++|..++++.
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999999999999998887 789999999999999999999987643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-17 Score=151.55 Aligned_cols=242 Identities=12% Similarity=0.018 Sum_probs=173.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHhccCCh
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL-IGVLSACASIGAL 337 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~ 337 (566)
..+..+|...|+++.|...++....++..++..+...+...++.++|++.++++...+..|+...+ ..+...+...|++
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 446677888888888888776654456667777888888888888888888888887666654443 3333555665444
Q ss_pred hHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHH-
Q 042098 338 DLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF- 416 (566)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~- 416 (566)
+ +|.+.|+. +.+...+..++..|.+.|++++|.+.|+++.+.. |+....
T Consensus 118 ~------------------------~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p~~~~~~ 167 (291)
T 3mkr_A 118 D------------------------AALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD----EDATLTQ 167 (291)
T ss_dssp H------------------------HHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHH
T ss_pred H------------------------HHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----cCcHHHH
Confidence 4 44444444 3567788888899999999999999999998754 554221
Q ss_pred --HHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 042098 417 --IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQ 492 (566)
Q Consensus 417 --~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 492 (566)
..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|++.+++... +.+..++..++..+.
T Consensus 168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~ 245 (291)
T 3mkr_A 168 LATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245 (291)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 12233344568899999999998876 234577888888899999999999999888654 246777888888888
Q ss_pred hcCCHHH-HHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHH
Q 042098 493 KQKNTDV-SQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 493 ~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (566)
..|+.++ +.++++++++.+|+++.+. +...+.+.++++..
T Consensus 246 ~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 246 HLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 8888765 5788899999999887544 34444555555443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-14 Score=150.46 Aligned_cols=409 Identities=12% Similarity=0.102 Sum_probs=264.1
Q ss_pred hHHHHHhhcCCCchhHHHHhhcCC-CC-----CcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 042098 56 NFLLIRIIDLKDFNYASLLFHQIS-RP-----NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129 (566)
Q Consensus 56 ~~~~~~l~~~g~~~~A~~~~~~~~-~~-----~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 129 (566)
+.+..+++..|.+.+|+++++++. +| +....|.++.+..+. +..+..+..+..... + ...+...+
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 345555557777777777777763 22 234455566555554 445555555554421 1 23355666
Q ss_pred HccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 042098 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209 (566)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (566)
...|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|++.|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 77888888888887741 11222233322 5677888888887664 46678888888888888888888886
Q ss_pred HhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHH
Q 042098 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289 (566)
Q Consensus 210 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 289 (566)
+. -|...|..++.+|.+.|+++++.+++....+...++.. .+.++.+|++.+++++...+. ..++...|
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I--dt~LafaYAKl~rleele~fI---~~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAKTNRLAELEEFI---NGPNNAHI 1198 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc--cHHHHHHHHhhcCHHHHHHHH---hCCCHHHH
Confidence 53 36677788888888888888888888887776533333 345888888888888655443 34566677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHc
Q 042098 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFE 369 (566)
Q Consensus 290 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 369 (566)
..+...|...|++++|..+|... ..|..+..++.+.|+++.|...++..
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA---------------------- 1247 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---------------------- 1247 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh----------------------
Confidence 77888888888888888888874 36788888888887777776666544
Q ss_pred cCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-
Q 042098 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK- 448 (566)
Q Consensus 370 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~- 448 (566)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+++++... ++.+.
T Consensus 1248 ----~n~~aWkev~~acve~~Ef~LA~~cgl~I-------iv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH 1313 (1630)
T 1xi4_A 1248 ----NSTRTWKEVCFACVDGKEFRLAQMCGLHI-------VVHADELEELINYYQDRGYFEELITMLEAAL---GLERAH 1313 (1630)
T ss_pred ----CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhH
Confidence 24566777777777777777776655432 2344556677777777777777777776554 33433
Q ss_pred hhHHHHHHHHHHhc--CCHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------
Q 042098 449 SEHYSCMVDLYARA--GHLSEAWDFVERMPEK-------VDEIVLGALLGACQKQKNTDVSQRVMQLLLE---------- 509 (566)
Q Consensus 449 ~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------- 509 (566)
...|.-|..+|++. ++..++++.|..-..- -+...|.-+...|.+.|+++.|....-+-..
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~ 1393 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKD 1393 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHH
Confidence 34555555555543 3555666665544332 2355677777777777777777622211111
Q ss_pred --hCCCCchhHHHHHHHHHhCC---------------ChHHHHHHHH
Q 042098 510 --IESSNSGNYVISSKIFANLK---------------MWDDSAKMRA 539 (566)
Q Consensus 510 --~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 539 (566)
..+.|+..|...+..|...+ +++++.+++.
T Consensus 1394 ~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1394 IITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 13556666666666666655 6666666665
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-15 Score=150.33 Aligned_cols=384 Identities=10% Similarity=0.012 Sum_probs=230.3
Q ss_pred CcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHHH
Q 042098 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLVSWNSMISGY 195 (566)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~ 195 (566)
|...|..++. +.+.|+++.|..+|+.+.+. .+.+...|..++..+.+.|++++|..+|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4556666666 35567777777777777654 234555666777777777777777777776654 5555555555322
Q ss_pred -HhcCChhHHHH----HHHHhHH-CCCCCC-HHHHHHHHHHhcC---------CCCchhHHHHHHHHHHhCCCchHHHHH
Q 042098 196 -SKMGYAKEAVE----LFGRMRE-EEFLPD-EITLVSVLGSCGD---------LGDLVLGKWVEGFVVKNKMDLNFYMGS 259 (566)
Q Consensus 196 -~~~~~~~~a~~----~~~~m~~-~~~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (566)
...|+.++|.+ +|++... .|..|+ ...|...+..... .|+++.|..+|+..++.........|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 23455555544 4444432 233332 3334333333222 344455555555444411111111121
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH------HCC---CCCCH--------h
Q 042098 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK------YAG---VNPDK--------I 322 (566)
Q Consensus 260 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~------~~g---~~p~~--------~ 322 (566)
.........|. ..+..++. .+.+++..|..++.++. +.. +.|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 11111000000 00111110 12345666776666532 111 23331 1
Q ss_pred HHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCC---CCChhHHHHHHHHHHH-------
Q 042098 323 TLIGVLSACAS----IGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP---VTNEVSWNAMISALAF------- 388 (566)
Q Consensus 323 ~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~------- 388 (566)
.|...+..... .++.. .....+...|++.. +.+...|..++..+.+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~--------------------~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQT--------------------LITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSH--------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCccCCcch--------------------hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhh
Confidence 22222211110 01110 00123333444333 3467788888888876
Q ss_pred cCChH-------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHH
Q 042098 389 NGRAH-------EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS--EHYSCMVDLY 459 (566)
Q Consensus 389 ~~~~~-------~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~ 459 (566)
.|+++ +|..+|++..+.- .+-+...+..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~--~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~ 366 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFA 366 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTT--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHH
Confidence 79987 8999999998631 2345778888899999999999999999999864 5652 4788899999
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHH
Q 042098 460 ARAGHLSEAWDFVERMPEKV--DEIVLGALLGA-CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (566)
.+.|++++|.++|++....| +...|...... +...|+.++|..+|+++++..|+++..+..++..+.+.|+.++|+.
T Consensus 367 ~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 367 RRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 99999999999999987642 22333322222 3368999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q 042098 537 MRALMREKGV 546 (566)
Q Consensus 537 ~~~~~~~~g~ 546 (566)
+++++...+.
T Consensus 447 ~~~~al~~~~ 456 (530)
T 2ooe_A 447 LFERVLTSGS 456 (530)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHhccC
Confidence 9999998754
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-16 Score=151.67 Aligned_cols=341 Identities=13% Similarity=0.072 Sum_probs=130.0
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 042098 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212 (566)
Q Consensus 133 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 212 (566)
|++++|.++++++ +++.+|..|..++.+.|++++|++.|... +|..+|..++.++...|++++|+..++..+
T Consensus 17 ~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 17 GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4455555555544 12235555555555555555555555332 344455555555555555555555444333
Q ss_pred HCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHH
Q 042098 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292 (566)
Q Consensus 213 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 292 (566)
+. .+++.+.+.++.+|.+.|+++++..++. .|+..+|..+...|...|.+++|...|..+ ..|..+
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 31 2334445555555555555555554442 234445555666666666666666666655 246666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCC
Q 042098 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP 372 (566)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 372 (566)
+.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|.... . .+.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~-------l-----------------~L~ 204 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG-------L-----------------HIV 204 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTT-------T-----------------TTT
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHH-------H-----------------HHH
Confidence 66666666666666666655 14556666666666665555552211 1 111
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh--hCcHHHHHHHHHHhHHhcCCCC---
Q 042098 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH--AGLVDEGRRLFDLMSSSFGLIP--- 447 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~--~g~~~~A~~~~~~~~~~~~~~p--- 447 (566)
..+.....++..|.+.|++++|..+++...... +-....|+-|..++++ .++..+.++.|. ++..++|
T Consensus 205 -~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le---~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~ 277 (449)
T 1b89_A 205 -VHADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLR 277 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHH
T ss_pred -hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHH
Confidence 123334467888999999999999999987643 3445666666666655 344555555443 3324555
Q ss_pred ---ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 448 ---KSEHYSCMVDLYARAGHLSEAWDFVERMPE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 448 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
+...|..++..|...++++.|....-+-+. .-+...| .....+..+.+---+...-.++..|. ....|..
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f---~~~~~kv~n~elyYkai~fyl~~~p~---~l~~ll~ 351 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQF---KDIITKVANVELYYRAIQFYLEFKPL---LLNDLLM 351 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHH---HHHHHHCSSTHHHHHHHHHHHHHCGG---GHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHH---HHHHhchhHHHHHHHHHHHHHhcCHH---HHHHHHH
Confidence 367888999999999999998886655542 1223332 33344445544444444444433332 3334444
Q ss_pred HHHhCCChHHHHHHH
Q 042098 524 IFANLKMWDDSAKMR 538 (566)
Q Consensus 524 ~~~~~g~~~~A~~~~ 538 (566)
++...=+...+.+++
T Consensus 352 ~l~~~ld~~r~v~~~ 366 (449)
T 1b89_A 352 VLSPRLDHTRAVNYF 366 (449)
T ss_dssp HHGGGCCHHHHHHHH
T ss_pred HHHhccCcHHHHHHH
Confidence 443333333333333
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-14 Score=149.44 Aligned_cols=418 Identities=11% Similarity=0.067 Sum_probs=291.9
Q ss_pred HHHHHHHHHhCCCCChHHHHHhhcCCCchhHHHHhhcC------CCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCC
Q 042098 41 QQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQI------SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG 114 (566)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g 114 (566)
+..-+.+.++ .|..+|..++...+ +-=+.+.++. ...++.--...+.+|... |.+.+|+++|++..-.+
T Consensus 941 k~~arylv~r---~d~~lW~~vl~~~n-~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~a-glp~EaieLLEKivl~~ 1015 (1630)
T 1xi4_A 941 KSLSRYLVRR---KDPELWGSVLLESN-PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTA-DLPNELIELLEKIVLDN 1015 (1630)
T ss_pred HHHHHHHHHh---cCHHHHHHHhcCCc-HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhC-CCHHHHHHHHHHHHcCC
Confidence 4444555544 67778888884333 1222344432 223444556677788888 99999999999987432
Q ss_pred C--CCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHH
Q 042098 115 L--KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192 (566)
Q Consensus 115 ~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 192 (566)
- .-+...-+.++....+. +.....++.+.... .....+...+...|.+++|..+|++.. ......+.++
T Consensus 1016 s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYkKa~-~~~~A~~VLi 1086 (1630)
T 1xi4_A 1016 SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFRKFD-VNTSAVQVLI 1086 (1630)
T ss_pred CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHHHcC-CHHHHHHHHH
Confidence 1 11234445566555555 55666665555431 113346777788899999999998875 2222333333
Q ss_pred HHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHH
Q 042098 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272 (566)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 272 (566)
. ..+++++|.++.++. -+..+|..+..++...|++++|...|... -+...|..++.++.+.|+++
T Consensus 1087 e---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyE 1151 (1630)
T 1xi4_A 1087 E---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWE 1151 (1630)
T ss_pred H---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHH
Confidence 3 667888888888865 23677888888888889999888888553 35566677888899999999
Q ss_pred HHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 042098 273 PARRVFDAMVN--KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350 (566)
Q Consensus 273 ~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 350 (566)
+|.+.|....+ +++...+.++.+|++.+++++..... . .++...+..+-..|...|++++|..++..+
T Consensus 1152 EAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1152 ELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 1221 (1630)
T ss_pred HHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---
Confidence 99888876533 33334445888888888887544332 2 345566667777777777776666666542
Q ss_pred CCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHH
Q 042098 351 GLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430 (566)
Q Consensus 351 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~ 430 (566)
..|..+..+|++.|++++|.+.+++. .+..+|..+-.+|...|++.
T Consensus 1222 --------------------------~ny~rLA~tLvkLge~q~AIEaarKA--------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1222 --------------------------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred --------------------------hHHHHHHHHHHHhCCHHHHHHHHHHh--------CCHHHHHHHHHHHhhhhHHH
Confidence 36999999999999999999999876 25578998999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 042098 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQ--KNTDVSQRVMQL 506 (566)
Q Consensus 431 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~--~~~~~A~~~~~~ 506 (566)
.|...... +..++..+..++..|.+.|.+++|+.+++....- .....|.-+...+.+. ++..++.++|..
T Consensus 1268 LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1268 LAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99987653 3446677889999999999999999999887643 3344565555555553 566666666665
Q ss_pred HHhhCC-----CCchhHHHHHHHHHhCCChHHHHHH
Q 042098 507 LLEIES-----SNSGNYVISSKIFANLKMWDDSAKM 537 (566)
Q Consensus 507 ~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (566)
-....| .+...|..++-.|.+.|+|+.|...
T Consensus 1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 555444 5778899999999999999999954
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-15 Score=152.43 Aligned_cols=303 Identities=11% Similarity=-0.024 Sum_probs=153.3
Q ss_pred CChhHHHHHHHHhHHCCCCCC-HHHHHHHHHH---hcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHH----HhcCC
Q 042098 199 GYAKEAVELFGRMREEEFLPD-EITLVSVLGS---CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY----GKCGA 270 (566)
Q Consensus 199 ~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~ 270 (566)
+++++|++.|++..+ +.|+ ...+..+... +...++.++|...+...++..+. +..++..+...+ ...|+
T Consensus 152 ~~y~~A~~~~~kal~--~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 152 NQNERAKVCFEKALE--KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp THHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC-----
T ss_pred ccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhH
Confidence 346666666666655 2333 2222222222 33445556666666666655443 222333333322 23456
Q ss_pred HHHHHHHHhcCC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCChhHHHHHHHH
Q 042098 271 LVPARRVFDAMV---NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD-KITLIGVLSACASIGALDLGKWVDKY 346 (566)
Q Consensus 271 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 346 (566)
+++|.+.+++.. ..+...+..+...|...|++++|+..+++..+. .|+ ..++..+..++...+....
T Consensus 229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~------- 299 (472)
T 4g1t_A 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVM------- 299 (472)
T ss_dssp -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhh-------
Confidence 667777776652 235556777777888888888888888887764 343 2333333322221100000
Q ss_pred HHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh
Q 042098 347 ASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426 (566)
Q Consensus 347 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~ 426 (566)
.. ............+.++.|...+++..+.. +.+..++..+...+...
T Consensus 300 --~~---------------------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 300 --NL---------------------------RENGMYGKRKLLELIGHAVAHLKKADEAN---DNLFRVCSILASLHALA 347 (472)
T ss_dssp --HC---------------------------------CHHHHHHHHHHHHHHHHHHHHHC---TTTCCCHHHHHHHHHHT
T ss_pred --hH---------------------------HHHHHHHHHHHHhhHHHHHHHHHHHhhcC---CchhhhhhhHHHHHHHh
Confidence 00 00000011111223567777777777653 23345666777778888
Q ss_pred CcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHH-HHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 042098 427 GLVDEGRRLFDLMSSSFGLIPKS--EHYSCMVD-LYARAGHLSEAWDFVERMPE-KVDEIVLGALLGACQKQKNTDVSQR 502 (566)
Q Consensus 427 g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 502 (566)
|++++|...|++..+. ...+.. ..+..+.. .+...|++++|+..|++... .|+..... +....+.+
T Consensus 348 ~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~ 417 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQK 417 (472)
T ss_dssp TCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHH
Confidence 8888888888877754 222221 12333332 23467888888888877643 24433222 22345567
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEE
Q 042098 503 VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555 (566)
Q Consensus 503 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 555 (566)
++++.++.+|.++.+|..++.+|...|++++|.+.++++.+.|...+...+|+
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 78888889999999999999999999999999999999999888777666665
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-16 Score=151.32 Aligned_cols=235 Identities=10% Similarity=-0.028 Sum_probs=190.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHH
Q 042098 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDA 364 (566)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A 364 (566)
+...+..+...+.+.|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++.+.+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------ 130 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP------------ 130 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------------
Confidence 44568888888899999999999999988753 33567788888888888888888888877776542
Q ss_pred HHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-----------HHHHHHHHHHhhhCcHHHHH
Q 042098 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND-----------VTFIGVLSACVHAGLVDEGR 433 (566)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-----------~t~~~ll~~~~~~g~~~~A~ 433 (566)
.+..+|..+..+|...|++++|...++++.+.. |+. ..+..+...+...|++++|.
T Consensus 131 ---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 197 (365)
T 4eqf_A 131 ---------NNLKALMALAVSYTNTSHQQDACEALKNWIKQN----PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK 197 (365)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----HHHHCC-------------------CCHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC----ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHH
Confidence 257789999999999999999999999998753 432 23344577888999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 434 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
..++++.+...-.++..++..+...|...|++++|++.+++... +.+..+|..+..++...|++++|...++++++..
T Consensus 198 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999997622222578899999999999999999999998765 2467889999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-16 Score=151.52 Aligned_cols=269 Identities=10% Similarity=-0.050 Sum_probs=187.9
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHH
Q 042098 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYA 297 (566)
Q Consensus 221 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 297 (566)
..+..+...+...|++++|...++.+.+..+. +..++..+..++...|++++|...|++..+ .+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34555666666666666666666666665443 344556666666666666666666665522 23455666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChh
Q 042098 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV 377 (566)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 377 (566)
..|++++|+..|+++.+. .|+.......+. ....
T Consensus 145 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~--------------------------------------------~~~~ 178 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ--NPKYKYLVKNKK--------------------------------------------GSPG 178 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH--CHHHHCC-----------------------------------------------------
T ss_pred ccccHHHHHHHHHHHHHh--CccchHHHhhhc--------------------------------------------cchH
Confidence 666666666666666552 122110000000 0133
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMV 456 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 456 (566)
.+..+...+...|++++|...++++.+..+ ..++..++..+...+...|++++|...++++.+. .| +..++..+.
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~ 254 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNG-DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLG 254 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHSC-SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCc-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 456678889999999999999999998651 1126889999999999999999999999999875 44 478899999
Q ss_pred HHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CchhHHHHH
Q 042098 457 DLYARAGHLSEAWDFVERMPE-K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS------------NSGNYVISS 522 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~l~ 522 (566)
.+|.+.|++++|+..|+++.. . .+...+..+..++...|++++|...++++++..|. +..++..++
T Consensus 255 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~ 334 (365)
T 4eqf_A 255 ATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALR 334 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHH
Confidence 999999999999999998765 2 45788999999999999999999999999998776 467899999
Q ss_pred HHHHhCCChHHHHHHHHH
Q 042098 523 KIFANLKMWDDSAKMRAL 540 (566)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~ 540 (566)
.++...|+.+.+.++.++
T Consensus 335 ~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 335 IALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHTCHHHHHHHHTT
T ss_pred HHHHHcCcHHHHHHHHHh
Confidence 999999999999887754
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-15 Score=147.76 Aligned_cols=255 Identities=11% Similarity=-0.025 Sum_probs=200.9
Q ss_pred HHhcCCHHHHHH-HHhcCCC--C-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCC
Q 042098 265 YGKCGALVPARR-VFDAMVN--K-----DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336 (566)
Q Consensus 265 ~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 336 (566)
+...|++++|.. .|++... + +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888888 8886533 1 34568888899999999999999999998864 3456678888888899999
Q ss_pred hhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-HH
Q 042098 337 LDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND-VT 415 (566)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-~t 415 (566)
++.|...++.+.+... .+..++..+...|...|++++|...++++.+.. |+. ..
T Consensus 114 ~~~A~~~~~~al~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~ 168 (368)
T 1fch_A 114 ELLAISALRRCLELKP---------------------DNQTALMALAVSFTNESLQRQACEILRDWLRYT----PAYAHL 168 (368)
T ss_dssp HHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----TTTGGG
T ss_pred HHHHHHHHHHHHhcCC---------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cCcHHH
Confidence 9888888887776542 367789999999999999999999999999864 332 22
Q ss_pred HHH---------------HHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C
Q 042098 416 FIG---------------VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE--K 478 (566)
Q Consensus 416 ~~~---------------ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 478 (566)
+.. .+..+...|++++|...++++.+...-.++..++..+...|.+.|++++|+..++++.. +
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 248 (368)
T 1fch_A 169 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 248 (368)
T ss_dssp CC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 211 23444489999999999999987622112477899999999999999999999998764 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
.+...|..+...+...|++++|...++++++..|.++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4578899999999999999999999999999999999999999999999999999999999998653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-16 Score=147.94 Aligned_cols=270 Identities=11% Similarity=-0.049 Sum_probs=188.8
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHH
Q 042098 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQ 298 (566)
Q Consensus 222 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 298 (566)
.+..+...+...|++++|..+++.+.+..+. +...+..+..++...|++++|...++++.+ .+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 3445555566666666666666666665433 344455566666666666666666665522 244455556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChh
Q 042098 299 NGLSNEAIMLFNRMKYAGVNPDKI-TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV 377 (566)
Q Consensus 299 ~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 377 (566)
.|++++|+..++++.+.. |+.. .+..+...+ |+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~------------------------------------------~~~~ 137 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD------------------------------------------VDID 137 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH------------------------------------------HHHH
Confidence 666666666666665532 2211 111110000 0111
Q ss_pred HHHHH-HH-HHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 042098 378 SWNAM-IS-ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSC 454 (566)
Q Consensus 378 ~~~~l-i~-~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 454 (566)
....+ .. .+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~ 211 (327)
T 3cv0_A 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMN---PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNK 211 (327)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHhHHHHHcccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHH
Confidence 11122 22 3667889999999999998864 446788999999999999999999999999875 34 4678899
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CchhHHH
Q 042098 455 MVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS------------NSGNYVI 520 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~ 520 (566)
+...+...|++++|++.++++.. +.+...+..+...+...|++++|.+.++++++..|. ++..+..
T Consensus 212 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (327)
T 3cv0_A 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDF 291 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHH
Confidence 99999999999999999998764 245788899999999999999999999999999998 7889999
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q 042098 521 SSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
++.++...|++++|..++++..
T Consensus 292 l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 292 FRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999986543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.8e-15 Score=136.32 Aligned_cols=245 Identities=10% Similarity=-0.018 Sum_probs=143.0
Q ss_pred HhcCCHHHHHHHHhccCCCCh----hHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHH
Q 042098 165 ARCGKLDSARKVFDEIRERDL----VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240 (566)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 240 (566)
...|++..|+..++.....++ ...-.+.++|...|+++.|+..++.. -+|+..++..+...+...++.+.|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 345666666666655544321 23334455666666666666544321 3344455555566666666666666
Q ss_pred HHHHHHHHhCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 042098 241 WVEGFVVKNKMDL-NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319 (566)
Q Consensus 241 ~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 319 (566)
..++.+...+..| +...+..+...+...|++++|.+.+++ ..+...+..++..+.+.|++++|...|+++.+.. |
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 6666666554333 334456677888899999999999998 4577888899999999999999999999998863 5
Q ss_pred CHhHHH---HHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHH
Q 042098 320 DKITLI---GVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396 (566)
Q Consensus 320 ~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 396 (566)
+..... ..+..+...|++++|..+++.+.+.. +.+...++.+..++.+.|++++|.
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~---------------------p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC---------------------SPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---------------------CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC---------------------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 532111 11122223344444444444444331 124555555555666666666666
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHH-HHHHHHHhHH
Q 042098 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE-GRRLFDLMSS 441 (566)
Q Consensus 397 ~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~-A~~~~~~~~~ 441 (566)
..|++..+.. +-+..++..++..+...|+.++ +.++++++.+
T Consensus 221 ~~l~~al~~~---p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 221 GVLQEALDKD---SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6666655542 2244455555555555555543 3455555553
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-15 Score=141.22 Aligned_cols=278 Identities=10% Similarity=-0.100 Sum_probs=211.0
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHH
Q 042098 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263 (566)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 263 (566)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++.+.+..+. +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 34457778889999999999999999998753 336778888889999999999999999999988654 5667888999
Q ss_pred HHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH--HhccCChh
Q 042098 264 MYGKCGALVPARRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA--CASIGALD 338 (566)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~ 338 (566)
.+...|++++|.+.++++.+. +...+..+... .|+......+... +...|+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 999999999999999987432 22222222110 0111111122122 45555566
Q ss_pred HHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHH
Q 042098 339 LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418 (566)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ 418 (566)
+|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+..++..
T Consensus 156 ~A~~~~~~~~~~~~---------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 211 (327)
T 3cv0_A 156 ECRTLLHAALEMNP---------------------NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR---PDDAQLWNK 211 (327)
T ss_dssp HHHHHHHHHHHHST---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHhhCC---------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCcHHHHHH
Confidence 66655555554332 257789999999999999999999999998864 446788999
Q ss_pred HHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-------------CHHH
Q 042098 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-------------DEIV 483 (566)
Q Consensus 419 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-------------~~~~ 483 (566)
+...+...|++++|...++++.+. .| +...+..+...|.+.|++++|.+.++++... | +...
T Consensus 212 l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 212 LGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 999999999999999999999875 34 4778899999999999999999999987542 3 3678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 484 LGALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
|..+..++...|+.++|..+++++++..|
T Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 88999999999999999999988766544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-17 Score=167.00 Aligned_cols=149 Identities=16% Similarity=0.071 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHH
Q 042098 287 VTWNAMITAYAQNGLSNEAIMLFNRMKY---AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDD 363 (566)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 363 (566)
.+||++|.+||+.|++++|.++|++|.+ .|+.||..||+++|.+|++.|++++|..+++.|...|+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~---------- 197 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT---------- 197 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----------
Confidence 4677777777777777777777766543 466777777777777777777777777777777777766
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 364 ALKVFEDMPVTNEVSWNAMISALAFNGRA-HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 364 A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
||+.+||++|.++|+.|+. ++|.++|++|.+.| +.||..||++++.++.+. ..++..+++..
T Consensus 198 ----------PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG--~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P- 260 (1134)
T 3spa_A 198 ----------PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG--LKLQALFTAVLLSEEDRA----TVLKAVHKVKP- 260 (1134)
T ss_dssp ----------CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT--CCSHHHHHHSCCCHHHHH----HHHHHHGGGCC-
T ss_pred ----------CcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CCCChhhcccccChhhHH----HHHHHHHHhCc-
Confidence 5678888888888888874 78899999999999 999999999998766654 34444444432
Q ss_pred cCCCCC------hhHHHHHHHHHHhcC
Q 042098 443 FGLIPK------SEHYSCMVDLYARAG 463 (566)
Q Consensus 443 ~~~~p~------~~~~~~l~~~~~~~g 463 (566)
++.|+ ..+...|.+.|.+.+
T Consensus 261 -~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 261 -TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp -CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred -ccCCCCCCcccccchHHHHHHHccCC
Confidence 44444 445556667777655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=5e-17 Score=166.46 Aligned_cols=129 Identities=13% Similarity=0.141 Sum_probs=111.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccC-------CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHH
Q 042098 152 EDDHVSHSLITMYARCGKLDSARKVFDEIR-------ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLV 224 (566)
Q Consensus 152 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 224 (566)
.-..+||+||++|++.|++++|.++|++|. .||+.|||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345689999999999999999999997764 4899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCc-hhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 042098 225 SVLGSCGDLGDL-VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280 (566)
Q Consensus 225 ~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 280 (566)
++|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 999999999885 78899999999999999999999998877776544444444333
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-14 Score=131.61 Aligned_cols=228 Identities=12% Similarity=0.015 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+....+...... .+.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~------ 75 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---ADY------ 75 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CCH------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc---cch------
Confidence 45555556666666666666666666554 4555566666666666666666655555444221100 000
Q ss_pred HccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC
Q 042098 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 447 (566)
+....+|..+...+...|++++|...+++..+.. |+. ..+...|++++|...++.+... .|
T Consensus 76 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~ 136 (258)
T 3uq3_A 76 -----KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH----RTA-------DILTKLRNAEKELKKAEAEAYV---NP 136 (258)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCH-------HHHHHHHHHHHHHHHHHHHHHC---CH
T ss_pred -----HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----chh-------HHHHHHhHHHHHHHHHHHHHHc---Cc
Confidence 0014678889999999999999999999999854 664 3466778999999999998864 45
Q ss_pred C-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 042098 448 K-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524 (566)
Q Consensus 448 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (566)
+ ...+..+...+...|++++|++.+++... ..+...|..+..++...|++++|...++++++..|+++..+..++.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 216 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4 67888999999999999999999998864 24678899999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHhCC
Q 042098 525 FANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 525 ~~~~g~~~~A~~~~~~~~~~g 545 (566)
+...|++++|.+.++++.+..
T Consensus 217 ~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 217 QIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999987654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.3e-14 Score=140.20 Aligned_cols=386 Identities=10% Similarity=-0.036 Sum_probs=230.1
Q ss_pred CcchHHHHHHHHHcCCCChhHHHHHHHHHHHC-----C--CCC-CcccHHHHHHHHHccCChhHHHHHHHHHHHhC----
Q 042098 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-----G--LKP-DNFTYPFVFISCANLLALNHGVSVHSSVFKIG---- 149 (566)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---- 149 (566)
....||.|...+... |++++|++.|++..+. + ..| ...+|..+..+|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~-G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLK-GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 356789998899999 9999999999887542 1 122 34678889999999999999999998887631
Q ss_pred --CC-CchhHHHHHHHHHHhc--CCHHHHHHHHhccCC--C-ChhHHHHHHHH---HHhcCChhHHHHHHHHhHHCCCCC
Q 042098 150 --LD-EDDHVSHSLITMYARC--GKLDSARKVFDEIRE--R-DLVSWNSMISG---YSKMGYAKEAVELFGRMREEEFLP 218 (566)
Q Consensus 150 --~~-~~~~~~~~li~~~~~~--~~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p 218 (566)
.. ....++..+..++... +++++|+..|++..+ | +...+..+..+ +...++.++|++.+++..+. .|
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NP 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CC
Confidence 11 1244565555555544 578999999998764 3 44555555444 44568889999999988764 34
Q ss_pred -CHHHHHHHHHHh----cCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHH
Q 042098 219 -DEITLVSVLGSC----GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN--K-DVVTWN 290 (566)
Q Consensus 219 -~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~ 290 (566)
+...+..+...+ ...++.++|...++......+. +..++..+...|...|++++|...+++..+ | +..++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 344454444333 3457889999999998887655 455678899999999999999999998743 3 445666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHcc
Q 042098 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFED 370 (566)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 370 (566)
.+...|...+.... .... ..... .....+..+.|...++...+..
T Consensus 286 ~lg~~y~~~~~~~~---------~~~~-~~~~~------~~~~~~~~~~A~~~~~~a~~~~------------------- 330 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLRE-NGMYG------KRKLLELIGHAVAHLKKADEAN------------------- 330 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------C------HHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHHHhh---------hHHH-HHHHH------HHHHHhhHHHHHHHHHHHhhcC-------------------
Confidence 66555533211111 0000 00000 0001112233444444433322
Q ss_pred CCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH--HHHHHHH-HHhhhCcHHHHHHHHHHhHHhcCCCC
Q 042098 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV--TFIGVLS-ACVHAGLVDEGRRLFDLMSSSFGLIP 447 (566)
Q Consensus 371 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~--t~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p 447 (566)
+.+..++..+...|...|++++|+..|++..+.. ..|... .+..+.. .....|+.++|+..|++..+ +.|
T Consensus 331 --~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~ 403 (472)
T 4g1t_A 331 --DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE--LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQ 403 (472)
T ss_dssp --TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCC
T ss_pred --CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCc
Confidence 2345678889999999999999999999998864 222221 1222222 23467899999999998875 466
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 042098 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522 (566)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (566)
+........ ..+.+++++... +.+..+|..+..++...|++++|++.|+++++.+|.+|.+...++
T Consensus 404 ~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 404 KSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp CCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred ccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 643322222 233334433322 356788999999999999999999999999999998887766554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-13 Score=137.53 Aligned_cols=375 Identities=9% Similarity=-0.010 Sum_probs=233.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHhccCCCChhHHHHHHHHHHhcC--
Q 042098 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL---DSARKVFDEIRERDLVSWNSMISGYSKMG-- 199 (566)
Q Consensus 125 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-- 199 (566)
+...+.+.|++++|.+.|+...+.| ++..+..|...|...|+. ++|...|+...+.+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3445556677777777777776665 223333444555556666 77777777776655556666666455544
Q ss_pred ---ChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC----
Q 042098 200 ---YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL---VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG---- 269 (566)
Q Consensus 200 ---~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 269 (566)
++++|+..|++..+.|... .+..+...|...+.. ..+...+....+.|. ......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCccc
Confidence 6678888888887765433 333444444333332 344555555555554 334456677777777
Q ss_pred CHHHHHHHHhcCCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc----CChhHHHH
Q 042098 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNG---LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI----GALDLGKW 342 (566)
Q Consensus 270 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~~~a~~ 342 (566)
+.+.+..+++.....++..+..+...|.+.| +.++|+..|++..+.|. ++...+..+-..|... ++.++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4556666777777777779999999999999 89999999999998873 3444334444455443 45555555
Q ss_pred HHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHH
Q 042098 343 VDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISA-L--AFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419 (566)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~l 419 (566)
.++... +.+...+..+... + ...+++++|+.+|++..+.| +...+..|
T Consensus 239 ~~~~aa------------------------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-----~~~A~~~L 289 (452)
T 3e4b_A 239 LLEKIA------------------------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-----QPRAELLL 289 (452)
T ss_dssp HHHHHG------------------------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-----CHHHHHHH
T ss_pred HHHHHc------------------------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHH
Confidence 554443 2355667777776 4 46889999999999998876 56666667
Q ss_pred HHHHhhhC-----cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042098 420 LSACVHAG-----LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR----AGHLSEAWDFVERMPEKVDEIVLGALLGA 490 (566)
Q Consensus 420 l~~~~~~g-----~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 490 (566)
...|. .| ++++|...|++.. .-++..+..|...|.. ..++++|...|++..+..+......|...
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~ 363 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQL 363 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 66666 55 9999999998775 2346677778877776 44999999999998877677777777777
Q ss_pred HHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 491 CQK----QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 491 ~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
|.. ..|.++|...++++.+.+++........+......++.++|.++.++..+.
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 764 458999999999999877554333333323333445777888887776643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-14 Score=126.24 Aligned_cols=162 Identities=12% Similarity=-0.014 Sum_probs=129.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh-----------CcHHHHHHHHHHhHHhc
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA-----------GLVDEGRRLFDLMSSSF 443 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~ 443 (566)
+...+..+..++.+.|++++|+..+++..+.. +-+...+..+...+... |++++|...+++..+.
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~- 113 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVART---PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV- 113 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-
Confidence 56677888888899999999999999998864 34567788888888888 9999999999999865
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 444 GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 444 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
.|+ ...+..+..+|...|++++|+..|++.... .+...+..+..++...|++++|...++++++.+|+++..+..+
T Consensus 114 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 191 (217)
T 2pl2_A 114 --NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY 191 (217)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 565 678889999999999999999999886431 6778889999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 042098 522 SKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~~~ 542 (566)
+.++...|++++|.+.+++..
T Consensus 192 a~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 192 ASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTC---------------
T ss_pred HHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999987653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=8.6e-14 Score=128.57 Aligned_cols=219 Identities=11% Similarity=-0.074 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
.|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+...
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------------- 108 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--------------- 108 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc---------------
Confidence 34444444444455555555444444432 11234444444444444444444444444443221
Q ss_pred HccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC
Q 042098 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 447 (566)
.+..++..+...|...|++++|...++++.+.. |+.......+..+...|++++|...++..... .++
T Consensus 109 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~ 176 (275)
T 1xnf_A 109 ------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDK 176 (275)
T ss_dssp ------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCC
T ss_pred ------cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCc
Confidence 245678888999999999999999999999854 55555555556667789999999999888765 233
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD-----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+... ..++..+...++.++|++.+++.... |. ...+..+...+...|++++|...++++++.+|.+...+
T Consensus 177 ~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--- 252 (275)
T 1xnf_A 177 EQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH--- 252 (275)
T ss_dssp CSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---
T ss_pred chHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---
Confidence 3334 44777888889999999999998765 32 57788899999999999999999999999999876544
Q ss_pred HHHHHhCCChHHHHHHH
Q 042098 522 SKIFANLKMWDDSAKMR 538 (566)
Q Consensus 522 ~~~~~~~g~~~~A~~~~ 538 (566)
+.++...|++++|.+.+
T Consensus 253 ~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 66788889999998876
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-12 Score=118.79 Aligned_cols=225 Identities=8% Similarity=-0.051 Sum_probs=157.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCccccCCH
Q 042098 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS----IGALDLGKWVDKYASQRGLRHDIFCGSI 361 (566)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (566)
..++..+...+...|++++|+..|++..+. -+...+..+-..+.. .+++++|...++...+.+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----------
Confidence 334444455555555555555555555542 122334444444444 444444444444443322
Q ss_pred HHHHHHHccCCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh----hCcHHHHH
Q 042098 362 DDALKVFEDMPVTNEVSWNAMISALAF----NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH----AGLVDEGR 433 (566)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~----~g~~~~A~ 433 (566)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.
T Consensus 73 -------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 73 -------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp -------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred -------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 34556677777777 888888888888887754 56677777777877 88888888
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 042098 434 RLFDLMSSSFGLIPKSEHYSCMVDLYAR----AGHLSEAWDFVERMPEKVDEIVLGALLGACQK----QKNTDVSQRVMQ 505 (566)
Q Consensus 434 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 505 (566)
..+++..+. + +...+..+...|.. .+++++|++.|++..+..+...+..+...+.. .+++++|...++
T Consensus 135 ~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 135 EYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp HHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 888888765 3 45667777788877 88888888888887766667778888888888 889999999999
Q ss_pred HHHhhCCCCchhHHHHHHHHHh----CCChHHHHHHHHHHHhCCCc
Q 042098 506 LLLEIESSNSGNYVISSKIFAN----LKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~ 547 (566)
++.+.+| +..+..++.+|.. .+++++|.+.+++..+.|..
T Consensus 211 ~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 211 KACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 8888765 6678888888888 88999999999888877653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-13 Score=122.32 Aligned_cols=232 Identities=10% Similarity=-0.082 Sum_probs=149.1
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C----C----hhHHHH
Q 042098 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN--K----D----VVTWNA 291 (566)
Q Consensus 222 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~ 291 (566)
.+..+...+...|++++|...+..+.+.. .+..++..+..++...|++++|...++...+ | + ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44445555555555555555555555554 3444555555555555555555555554422 1 0 234444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccC
Q 042098 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDM 371 (566)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 371 (566)
+...+...|++++|+..|++.... .|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~--------------------------------------------------- 111 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRT--------------------------------------------------- 111 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCC---------------------------------------------------
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cch---------------------------------------------------
Confidence 444555555555555555544442 122
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhH
Q 042098 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451 (566)
Q Consensus 372 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 451 (566)
...+...|++++|...++++.... +.+...+..+...+...|++++|...++...+. . +.+..+
T Consensus 112 -----------~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~ 175 (258)
T 3uq3_A 112 -----------ADILTKLRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-A-PEDARG 175 (258)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHH
T ss_pred -----------hHHHHHHhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-cccHHH
Confidence 123445567788888888887753 234556777777788888888888888888765 1 224667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHH
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE------SSNSGNYVISSK 523 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~ 523 (566)
+..+..+|.+.|++++|++.+++... +.+...|..+..++...|++++|...++++++.. |.+..++..+..
T Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 78888888888888888888887754 2457778888899999999999999999999888 777777666654
Q ss_pred H
Q 042098 524 I 524 (566)
Q Consensus 524 ~ 524 (566)
+
T Consensus 256 ~ 256 (258)
T 3uq3_A 256 A 256 (258)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.5e-13 Score=122.48 Aligned_cols=244 Identities=11% Similarity=-0.033 Sum_probs=165.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhc
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD--KITLIGVLSACAS 333 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~ 333 (566)
......+...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+.+-.|+ ...+..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3455566677777777777776522 2 344667777777777777777777777776332222 1235566666677
Q ss_pred cCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH
Q 042098 334 IGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413 (566)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~ 413 (566)
.|++++|...++...+... .+..+|..+...|...|++++|...+++..+.. +.+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~ 142 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDT---------------------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDP 142 (272)
T ss_dssp TTCHHHHHHHHHHHHHHST---------------------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCH
T ss_pred cccHHHHHHHHHHHHhcCc---------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcH
Confidence 7777766666666655432 245678888888899999999999998887753 3345
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHhCCC----CCC-----
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGH---LSEAWDFVERMPE----KVD----- 480 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~----~~~----- 480 (566)
..+..+...+...+++++|...|+.+.+. .|+ ...+..+..++...|+ +++|...+++... .|+
T Consensus 143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 219 (272)
T 3u4t_A 143 KVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHH
Confidence 56666663444556899999999888865 454 5677777888887777 7777777766543 133
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 481 -EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 481 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
...|..+...+...|++++|.+.++++++.+|+++.+...+..+....+
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 2567778888888999999999999999999999888888776655443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=9.6e-13 Score=119.79 Aligned_cols=168 Identities=10% Similarity=0.020 Sum_probs=133.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYS 453 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 453 (566)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++... +..|+ ...+.
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ 145 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASD---SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD-TLYPERSRVFE 145 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC-ccCcccHHHHH
Confidence 45567777888888888888888888887764 346677778888888888888888888887752 34554 56777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
.+...|...|++++|.+.+++.... .+...+..+...+...|++++|...++++.+..|.+...+..++.++...|++
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCH
Confidence 7888888888888888888876542 35677788888888888899999888888888888888888888888888999
Q ss_pred HHHHHHHHHHHhCCC
Q 042098 532 DDSAKMRALMREKGV 546 (566)
Q Consensus 532 ~~A~~~~~~~~~~g~ 546 (566)
++|.++++++.+...
T Consensus 226 ~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 226 DTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCC
Confidence 999888888877644
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-12 Score=115.51 Aligned_cols=206 Identities=11% Similarity=0.009 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
.|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+...
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------------- 102 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS--------------- 102 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---------------
Confidence 44455555555666666666666555432 22344455555555555555555555555444321
Q ss_pred HccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCC
Q 042098 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP-NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (566)
.+...+..+...|...|++++|..+++++.+.+ ..| +...+..+...+...|++++|...++++.+. .
T Consensus 103 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~ 171 (252)
T 2ho1_A 103 ------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT--LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---N 171 (252)
T ss_dssp ------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT--TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred ------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C
Confidence 246678888899999999999999999998733 334 5667888888999999999999999998875 3
Q ss_pred C-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 447 P-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 447 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
| +...+..+...|...|++++|...++++... .+...+..+...+...|+.++|.+.++++.+..|+++.....
T Consensus 172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4 4778889999999999999999999987653 466778888899999999999999999999999998776544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-12 Score=128.52 Aligned_cols=346 Identities=10% Similarity=0.020 Sum_probs=231.3
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-CChhHHHHHHHHHHhcCCh---hHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCC-
Q 042098 160 LITMYARCGKLDSARKVFDEIRE-RDLVSWNSMISGYSKMGYA---KEAVELFGRMREEEFLPDEITLVSVLGSCGDLG- 234 (566)
Q Consensus 160 li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~- 234 (566)
+...+.+.|++++|+++|+...+ .+..++..+...|...|+. ++|+..|++..+. +...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 56677888999999999988765 3555666666677777888 8999999988754 4444444555333333
Q ss_pred ----CchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHH---HHHHHhcCC-CCChhHHHHHHHHHHHcCCHHHHH
Q 042098 235 ----DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP---ARRVFDAMV-NKDVVTWNAMITAYAQNGLSNEAI 306 (566)
Q Consensus 235 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~ 306 (566)
+.++|...++...+.|... .+..|...|...+..++ +.+.+.... ..++..+..+...|...+.++++.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 7789999999999877543 44567777776655433 344444332 235677888888888888666555
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccC---ChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHH
Q 042098 307 MLFNRMKYAGVNPDKITLIGVLSACASIG---ALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMI 383 (566)
Q Consensus 307 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 383 (566)
.....+...-...+...+..+-..+...| +.++|...++...+.|.. +...+..+.
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~---------------------~a~~~~~Lg 220 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV---------------------TAQRVDSVA 220 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS---------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH---------------------HHHHHHHHH
Confidence 54333332222233346777777777788 788888888777776643 444456677
Q ss_pred HHHHHc----CChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH-H--hhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 042098 384 SALAFN----GRAHEALLLFERMSKEGGAARPNDVTFIGVLSA-C--VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456 (566)
Q Consensus 384 ~~~~~~----~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~-~--~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 456 (566)
..|... +++++|+.+|++.. .| +...+..|... + ...+++++|...|++..+. | +...+..|.
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~g-----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg 290 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-PG-----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLG 290 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-GG-----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-CC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHH
Confidence 777554 78999999999998 55 33444445444 3 4589999999999998865 4 567777888
Q ss_pred HHHHhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 042098 457 DLYARAG-----HLSEAWDFVERMPEKVDEIVLGALLGACQK----QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527 (566)
Q Consensus 457 ~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (566)
..|. .| ++++|++.|++.. ..+...+..|...|.. ..|.++|...|+++.+. .++.....|+.+|..
T Consensus 291 ~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 291 KLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQ 366 (452)
T ss_dssp HHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHS
T ss_pred HHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHh
Confidence 8887 55 9999999999999 7788888888877776 34999999999999874 566788899999885
Q ss_pred ----CCChHHHHHHHHHHHhCCCc
Q 042098 528 ----LKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 528 ----~g~~~~A~~~~~~~~~~g~~ 547 (566)
.++.++|...+++..+.|..
T Consensus 367 G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp CTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCH
Confidence 56999999999999888764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-12 Score=114.45 Aligned_cols=166 Identities=10% Similarity=-0.036 Sum_probs=116.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh-CcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA-GLVDEGRRLFDLMSSSFGLIPK-SEHYS 453 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 453 (566)
...+..+...+...|++++|...++++.+.. +.+..++..+...+... |++++|...++.+.+. +..|+ ...+.
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ 117 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIK---PDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANL 117 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHH
Confidence 4456666667777777777777777776653 33556667777777777 7777777777777652 23343 45666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCchhHHHHHHHHHhCCC
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES-SNSGNYVISSKIFANLKM 530 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~ 530 (566)
.+...+...|++++|++.++++... .+...+..+...+...|++++|...++++++..| .++..+..++.++...|+
T Consensus 118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN 197 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc
Confidence 7777777777777777777766532 3466677777777777888888888888877777 777777777777778888
Q ss_pred hHHHHHHHHHHHhCC
Q 042098 531 WDDSAKMRALMREKG 545 (566)
Q Consensus 531 ~~~A~~~~~~~~~~g 545 (566)
.++|..+++.+.+..
T Consensus 198 ~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 198 AQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 888887777776543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-12 Score=115.81 Aligned_cols=225 Identities=9% Similarity=-0.086 Sum_probs=170.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042098 257 MGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQ----NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331 (566)
Q Consensus 257 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 331 (566)
.+..+...+...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+-..+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 4455566666667777777776665443 44556666666777 777777777777777654 455566666666
Q ss_pred hc----cCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 042098 332 AS----IGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAF----NGRAHEALLLFERMS 403 (566)
Q Consensus 332 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~ 403 (566)
.. .++.++|...++...+.+ +..++..+...|.. .+++++|+..|++..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~-----------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK-----------------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC-----------------------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 66 666666666666555432 45678888888888 999999999999998
Q ss_pred hCCCCCCCCHHHHHHHHHHHhh----hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhC
Q 042098 404 KEGGAARPNDVTFIGVLSACVH----AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR----AGHLSEAWDFVERM 475 (566)
Q Consensus 404 ~~g~~~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 475 (566)
+.+ +...+..+...+.. .+++++|...+++..+. + +...+..+...|.. .+++++|++.+++.
T Consensus 142 ~~~-----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 142 DLN-----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp HTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred hcC-----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 865 45667777777877 89999999999998865 3 46778888999999 99999999999988
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCch
Q 042098 476 PEKVDEIVLGALLGACQK----QKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 476 ~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
.+..+...+..+...+.. .++.++|.+.++++.+.+|++..
T Consensus 213 ~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 213 CELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 766567888888899998 99999999999999999887543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-13 Score=120.75 Aligned_cols=144 Identities=12% Similarity=0.025 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 455 (566)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 165 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG---MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQF 165 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHH
Confidence 3445555555666666666666666665542 234455555555566666666666666665543 11224455555
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (566)
...+.+.|++++|++.++++... .+..++..+..++...|++++|...++++++..|+++..+..+..+
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 55555556666665555554321 2344555555555556666666666666666556555555544433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-12 Score=111.45 Aligned_cols=166 Identities=13% Similarity=0.057 Sum_probs=148.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYS 453 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 453 (566)
+...|..+...|...|++++|+..|++..+.. +-+..++..+...+...|++++|...++..... .|+ ...+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD---PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHH
Confidence 56789999999999999999999999999864 346778889999999999999999999998865 444 66778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
.+...+...+++++|.+.+.+... +.+...+..+...+.+.|++++|++.++++++.+|.++.++..++.+|.+.|++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 888999999999999999988754 246778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 042098 532 DDSAKMRALMREKGV 546 (566)
Q Consensus 532 ~~A~~~~~~~~~~g~ 546 (566)
++|.+.++++.+...
T Consensus 158 ~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 158 DEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999987654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-11 Score=109.88 Aligned_cols=207 Identities=9% Similarity=0.005 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
.|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++.|...++.+.+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------- 73 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP--------------- 73 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---------------
Confidence 34444444445555555555555444431 11233444444444445444444444444433221
Q ss_pred HccCCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCC
Q 042098 368 FEDMPVTNEVSWNAMISALAFN-GRAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (566)
.+..++..+...+... |++++|...++++.+.+ ..|+ ...+..+...+...|++++|...++++.+.
T Consensus 74 ------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 142 (225)
T 2vq2_A 74 ------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADP--TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--- 142 (225)
T ss_dssp ------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTST--TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred ------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCc--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 2455677788888899 99999999999988732 3343 567788888899999999999999988865
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 446 IPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK---VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 446 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
.|+ ...+..+...+.+.|++++|.+.++++... .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 143 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 143 QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 344 678888999999999999999999887642 3566677777888899999999999999999999988766554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.4e-13 Score=119.72 Aligned_cols=168 Identities=10% Similarity=0.127 Sum_probs=148.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 454 (566)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. . +.+...+..
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~ 130 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELD---SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-G-MENGDLFYM 130 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-T-CCSHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-C-CCCHHHHHH
Confidence 45567788888999999999999999998864 346788888999999999999999999999875 2 335778889
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChH
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (566)
+...+.+.|++++|++.++++... .+...+..+...+...|++++|...++++.+..|.++.++..++.+|...|+++
T Consensus 131 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE 210 (243)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHH
Confidence 999999999999999999987642 467788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCc
Q 042098 533 DSAKMRALMREKGVS 547 (566)
Q Consensus 533 ~A~~~~~~~~~~g~~ 547 (566)
+|.+.++++.+....
T Consensus 211 ~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 211 KALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccCcc
Confidence 999999999876543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-12 Score=117.36 Aligned_cols=237 Identities=9% Similarity=-0.051 Sum_probs=188.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHH
Q 042098 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALK 366 (566)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~ 366 (566)
..+......+...|++++|+..|++..+... .+...+..+..++...|++++|...+....+.+..++
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------- 71 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK----------- 71 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh-----------
Confidence 3455567788999999999999999988632 2344777788899999999999998888877332211
Q ss_pred HHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCC
Q 042098 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446 (566)
Q Consensus 367 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (566)
.....|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++..+. .
T Consensus 72 -------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~ 138 (272)
T 3u4t_A 72 -------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---T 138 (272)
T ss_dssp -------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---S
T ss_pred -------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---C
Confidence 124468899999999999999999999999864 345678999999999999999999999988753 5
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhC---CCC---
Q 042098 447 PK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQKQKN---TDVSQRVMQLLLEIE---SSN--- 514 (566)
Q Consensus 447 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---p~~--- 514 (566)
|+ ...+..+...+...+++++|++.|+++... | +...+..+..++...|+ .++|...++++++.. |+.
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 218 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218 (272)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchH
Confidence 55 567777773444556999999999988652 4 46777778888888888 888999999999875 442
Q ss_pred --chhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 515 --SGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 515 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
..+|..++.+|...|++++|.+.++++.+.....
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 219 ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 2578889999999999999999999998876543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-12 Score=129.24 Aligned_cols=235 Identities=10% Similarity=-0.008 Sum_probs=156.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042098 258 GSALIDMYGKCGALVPARRVFDAMVN---------KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328 (566)
Q Consensus 258 ~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 328 (566)
+..+...|...|++++|...+++..+ ....++..+...|...|++++|+..+++..+...
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------- 157 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLAR----------- 157 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----------
Confidence 34455555555555555555554421 1233566666777777777777777776654200
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCC-----------------
Q 042098 329 SACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR----------------- 391 (566)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~----------------- 391 (566)
..++.. ....++..+...|...|+
T Consensus 158 ----~~~~~~-----------------------------------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 158 ----QLGDRL-----------------------------------SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp ----HHTCHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred ----HhhchH-----------------------------------HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 000000 013346666677777777
Q ss_pred hHHHHHHHHHHHhC----CCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcC
Q 042098 392 AHEALLLFERMSKE----GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYARAG 463 (566)
Q Consensus 392 ~~~A~~~~~~m~~~----g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 463 (566)
+++|+..+++..+. +. ......++..+...+...|++++|...+++..+...-.++ ..++..+...|...|
T Consensus 199 ~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGD-RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLG 277 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCc
Confidence 77787777775442 10 1112346777778888899999999999888764211112 237788888999999
Q ss_pred CHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CchhHHHHHHHHHhCC
Q 042098 464 HLSEAWDFVERMPEK--------VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS------NSGNYVISSKIFANLK 529 (566)
Q Consensus 464 ~~~~A~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g 529 (566)
++++|++.+++.... ....++..+...+...|++++|...++++++..+. ...++..++.+|...|
T Consensus 278 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 357 (411)
T 4a1s_A 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence 999999988876542 12467778888999999999999999999887433 2458888999999999
Q ss_pred ChHHHHHHHHHHHh
Q 042098 530 MWDDSAKMRALMRE 543 (566)
Q Consensus 530 ~~~~A~~~~~~~~~ 543 (566)
++++|.+.+++..+
T Consensus 358 ~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 358 GHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999998854
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-12 Score=120.07 Aligned_cols=222 Identities=12% Similarity=-0.039 Sum_probs=179.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCC
Q 042098 298 QNGLSNEAIMLFNRMKYAGVNP---DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVT 374 (566)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 374 (566)
..|++++|+..++++.+..... +...+..+...+...|++++|...++.+.+... .
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---------------------~ 75 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP---------------------D 75 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---------------------C
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC---------------------C
Confidence 3578999999999998863211 345677788888999999999888888777543 3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 454 (566)
+..+|..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .|+......
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~ 149 (275)
T 1xnf_A 76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSL 149 (275)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHH
Confidence 67889999999999999999999999999864 345788899999999999999999999999875 566555555
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CchhHHHHHHHHHhCC
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS----NSGNYVISSKIFANLK 529 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g 529 (566)
....+...|++++|...+++.... |+......++..+...++.++|...++++.+..|. ++..+..++.+|...|
T Consensus 150 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 229 (275)
T 1xnf_A 150 WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG 229 (275)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcC
Confidence 556667789999999999766532 33333344777788889999999999999877653 4688999999999999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 042098 530 MWDDSAKMRALMREKGV 546 (566)
Q Consensus 530 ~~~~A~~~~~~~~~~g~ 546 (566)
++++|.+.++++.+...
T Consensus 230 ~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 230 DLDSATALFKLAVANNV 246 (275)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHhCCc
Confidence 99999999999988754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=8.4e-12 Score=119.87 Aligned_cols=245 Identities=7% Similarity=0.010 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042098 256 YMGSALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNGL-SNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331 (566)
Q Consensus 256 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 331 (566)
.++..+...+...|++++|+..+++..+ | +...|+.+...+...|+ +++|+..|++..... +-+...|..+-.++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3455666667777777777777777633 2 45677777777777785 888888888877753 12455666666777
Q ss_pred hccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC
Q 042098 332 ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411 (566)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p 411 (566)
...|++++|...++.+.+... .+..+|..+..++...|++++|+..++++++.. +-
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP---------------------~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~ 232 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDA---------------------KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VR 232 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TT
T ss_pred HHccCHHHHHHHHHHHHHhCc---------------------cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CC
Confidence 777777777777776666543 267789999999999999999999999999864 34
Q ss_pred CHHHHHHHHHHHhh-hCcHHHH-----HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC--CHHHHHHHHHhCCCC-CCH
Q 042098 412 NDVTFIGVLSACVH-AGLVDEG-----RRLFDLMSSSFGLIPK-SEHYSCMVDLYARAG--HLSEAWDFVERMPEK-VDE 481 (566)
Q Consensus 412 ~~~t~~~ll~~~~~-~g~~~~A-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-~~~ 481 (566)
+...|+.+..++.. .|..++| +..+++.... .|+ ...|..+..++...| ++++|++.+.++... .+.
T Consensus 233 ~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~ 309 (382)
T 2h6f_A 233 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSP 309 (382)
T ss_dssp CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCH
T ss_pred CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCH
Confidence 57788888888888 5665666 5778887764 565 678888888888888 689999999888333 456
Q ss_pred HHHHHHHHHHHhcC---------CHHHHHHHHHHH-HhhCCCCchhHHHHHHHHHhC
Q 042098 482 IVLGALLGACQKQK---------NTDVSQRVMQLL-LEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 482 ~~~~~l~~~~~~~~---------~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 528 (566)
..+..+...+.+.| ..++|.++++++ .+.+|.....|..++..+...
T Consensus 310 ~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 310 YLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 67788888888764 258999999999 899999998888887766543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-12 Score=127.07 Aligned_cols=58 Identities=16% Similarity=0.002 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042098 257 MGSALIDMYGKCGALVPARRVFDAMVN-----K----DVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314 (566)
Q Consensus 257 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (566)
++..+...+...|++++|...+++... . ...++..+...+...|++++|+..+++..+
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 115 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 115 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555666666555554311 1 133566666777777777777777776654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=124.41 Aligned_cols=167 Identities=11% Similarity=0.033 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHcCC--------------------hHHHHHHHHHHHhC----CCCCCCCHHHHHHHHHHHhhhCcHHHHH
Q 042098 378 SWNAMISALAFNGR--------------------AHEALLLFERMSKE----GGAARPNDVTFIGVLSACVHAGLVDEGR 433 (566)
Q Consensus 378 ~~~~li~~~~~~~~--------------------~~~A~~~~~~m~~~----g~~~~p~~~t~~~ll~~~~~~g~~~~A~ 433 (566)
++..+...+...|+ +++|...+++.... +. ......++..+...+...|++++|.
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 45556666666666 77777777765432 10 1112346777788888999999999
Q ss_pred HHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CC----HHHHHHHHHHHHhcCCHHHHH
Q 042098 434 RLFDLMSSSFGLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPEK----VD----EIVLGALLGACQKQKNTDVSQ 501 (566)
Q Consensus 434 ~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~A~ 501 (566)
..+++..+...-.++ ..++..+...+...|++++|.+.+++.... ++ ..++..+...+...|++++|.
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999888754211122 337788889999999999999999876531 12 556778889999999999999
Q ss_pred HHHHHHHhhCCCC------chhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 502 RVMQLLLEIESSN------SGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 502 ~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
..++++++..|.. ..++..++.+|...|++++|.+.++++.+..
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 9999998875432 4478889999999999999999999988753
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=128.40 Aligned_cols=293 Identities=12% Similarity=0.042 Sum_probs=183.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC----HHHHHHHHHHhcCCCCchhHHHHHHHHHHh----CCCc-hHHHH
Q 042098 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPD----EITLVSVLGSCGDLGDLVLGKWVEGFVVKN----KMDL-NFYMG 258 (566)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 258 (566)
+......+...|++++|+..|++..+.+.. + ...+..+...+...|+++.|...++...+. +..+ ...++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 333444445555555555555554442111 1 123444444455555555555555543332 1111 23355
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVN-----KD----VVTWNAMITAYAQNGL--------------------SNEAIMLF 309 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a~~~~ 309 (566)
..+...+...|++++|...+++..+ ++ ..++..+...+...|+ +++|+..+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 6677777777888888777776532 11 2356667777777777 66666666
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHc
Q 042098 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389 (566)
Q Consensus 310 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 389 (566)
++.... +...++.. ....++..+...|...
T Consensus 171 ~~al~~---------------~~~~~~~~-----------------------------------~~~~~~~~la~~~~~~ 200 (406)
T 3sf4_A 171 EENLSL---------------VTALGDRA-----------------------------------AQGRAFGNLGNTHYLL 200 (406)
T ss_dssp HHHHHH---------------HHHTTCHH-----------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHH---------------HHhccCcH-----------------------------------HHHHHHHHHHHHHHHc
Confidence 554331 00000000 0134577778888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCCC----HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHh
Q 042098 390 GRAHEALLLFERMSKEGGAARPN----DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYAR 461 (566)
Q Consensus 390 ~~~~~A~~~~~~m~~~g~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~ 461 (566)
|++++|...+++..+... -.++ ..++..+...+...|++++|...+++......-.++ ..++..+...|..
T Consensus 201 g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 279 (406)
T 3sf4_A 201 GNFRDAVIAHEQRLLIAK-EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 279 (406)
T ss_dssp TBHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence 999999988888765310 0122 236777788888999999999999887654111112 4577788889999
Q ss_pred cCCHHHHHHHHHhCCCC----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHHHHHh
Q 042098 462 AGHLSEAWDFVERMPEK----VD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIE------SSNSGNYVISSKIFAN 527 (566)
Q Consensus 462 ~g~~~~A~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 527 (566)
.|++++|.+.+++.... ++ ..++..+...+...|++++|.+.++++++.. +....++..++.++..
T Consensus 280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (406)
T 3sf4_A 280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMV 359 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 99999999998876531 22 5577788899999999999999999998873 2335678888999988
Q ss_pred CCChH
Q 042098 528 LKMWD 532 (566)
Q Consensus 528 ~g~~~ 532 (566)
.|+..
T Consensus 360 ~g~~~ 364 (406)
T 3sf4_A 360 LGLSY 364 (406)
T ss_dssp HHTTS
T ss_pred hhHhH
Confidence 88763
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-12 Score=123.22 Aligned_cols=231 Identities=11% Similarity=0.033 Sum_probs=193.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCC-hhHHHHHHHHHHHhCCCCccccCCHHH
Q 042098 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP-DKITLIGVLSACASIGA-LDLGKWVDKYASQRGLRHDIFCGSIDD 363 (566)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~ 363 (566)
...|+.+...+.+.|++++|+..+++.... .| +...|..+..++...|+ +++|...++.+......
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~---------- 164 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---------- 164 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC----------
Confidence 457888888999999999999999999885 44 45677777888888886 88888888887775533
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc
Q 042098 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443 (566)
Q Consensus 364 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 443 (566)
+...|..+..++...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++.+.
T Consensus 165 -----------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l- 229 (382)
T 2h6f_A 165 -----------NYQVWHHRRVLVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE- 229 (382)
T ss_dssp -----------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-
T ss_pred -----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-
Confidence 67899999999999999999999999999865 446788999999999999999999999999976
Q ss_pred CCCCC-hhHHHHHHHHHHh-cCCHHHH-----HHHHHhCCC-C-CCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCC
Q 042098 444 GLIPK-SEHYSCMVDLYAR-AGHLSEA-----WDFVERMPE-K-VDEIVLGALLGACQKQK--NTDVSQRVMQLLLEIES 512 (566)
Q Consensus 444 ~~~p~-~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~-~-~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p 512 (566)
.|+ ...|+.+..+|.+ .|..++| ++.+++... . .+...|..+...+...| ++++|.+.++++ +.+|
T Consensus 230 --~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p 306 (382)
T 2h6f_A 230 --DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH 306 (382)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC
T ss_pred --CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC
Confidence 555 7789999999999 6665777 477777654 2 45778888888888888 689999999998 8889
Q ss_pred CCchhHHHHHHHHHhCC---------ChHHHHHHHHHH-HhCCC
Q 042098 513 SNSGNYVISSKIFANLK---------MWDDSAKMRALM-REKGV 546 (566)
Q Consensus 513 ~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~g~ 546 (566)
+++..+..++.+|.+.| .+++|.++++++ .+.+.
T Consensus 307 ~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 307 SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT 350 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG
T ss_pred CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999975 359999999998 66543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.5e-12 Score=111.23 Aligned_cols=193 Identities=15% Similarity=0.044 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042098 254 NFYMGSALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330 (566)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 330 (566)
+...+..+...+.+.|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+. .|+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~---------- 71 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPR---------- 71 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC----------
Confidence 344455555666666666666666665532 2 3445555556666666666666666665553 232
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHc-----------CChHHHHHHH
Q 042098 331 CASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFN-----------GRAHEALLLF 399 (566)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~A~~~~ 399 (566)
+...+..+..++... |++++|+..+
T Consensus 72 --------------------------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~ 107 (217)
T 2pl2_A 72 --------------------------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVL 107 (217)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHH
Confidence 344555556666666 8999999999
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--
Q 042098 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-- 477 (566)
Q Consensus 400 ~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 477 (566)
++..+.. +-+...+..+...+...|++++|+..|++..+. . .+...+..+..+|...|++++|+..|++...
T Consensus 108 ~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 108 KDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998854 235677888888899999999999999999887 4 6778888999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042098 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLL 508 (566)
Q Consensus 478 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 508 (566)
+.+...+..+...+...|++++|...+++..
T Consensus 182 P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 182 PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp TTCHHHHHHHHHHHTC---------------
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 2456778888899999999999999888764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-12 Score=127.37 Aligned_cols=209 Identities=8% Similarity=-0.036 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCh-hHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHH
Q 042098 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL-DLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380 (566)
Q Consensus 302 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 380 (566)
+++++..+++..... +.+...+..+-.++...|++ ++|...++...+... .+...|.
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p---------------------~~~~a~~ 141 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP---------------------ELVEAWN 141 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT---------------------TCHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC---------------------CCHHHHH
Confidence 455666666554431 23455666666677777777 777777766665432 2577899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh---------CcHHHHHHHHHHhHHhcCCCCC-hh
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA---------GLVDEGRRLFDLMSSSFGLIPK-SE 450 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~~p~-~~ 450 (566)
.+..+|...|++++|...|++..+. .|+...+..+...+... |++++|...+++..+. .|+ ..
T Consensus 142 ~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~ 214 (474)
T 4abn_A 142 QLGEVYWKKGDVTSAHTCFSGALTH----CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGR 214 (474)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTT----CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh----CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHH
Confidence 9999999999999999999999985 47788889999999999 9999999999999875 455 77
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 042098 451 HYSCMVDLYARA--------GHLSEAWDFVERMPE-KV----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517 (566)
Q Consensus 451 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (566)
.|..+..+|... |++++|++.|++... .| +...|..+..++...|++++|.+.|+++++.+|+++..
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a 294 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 889999999998 999999999999875 35 78889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHH
Q 042098 518 YVISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~ 539 (566)
+..++.++...|++++|.+.++
T Consensus 295 ~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 295 QQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999997543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-09 Score=109.17 Aligned_cols=418 Identities=8% Similarity=0.012 Sum_probs=208.0
Q ss_pred CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC---hhHHHHHHHHHHHhC-CCCchh
Q 042098 80 RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA---LNHGVSVHSSVFKIG-LDEDDH 155 (566)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~ 155 (566)
+-|...|..++..+.+. +.++.+..+|+.+... .+.+...|..-+..-.+.++ .+.+..+|+..+... ..|++.
T Consensus 63 p~d~~~W~~yi~~~~~~-~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSL-KQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 35777888888888888 8899999999998876 34455667777777777777 888999988887754 137777
Q ss_pred HHHHHHHHHHhcCCH--------HHHHHHHhccC------CC-ChhHHHHHHHHHHh---------cCChhHHHHHHHHh
Q 042098 156 VSHSLITMYARCGKL--------DSARKVFDEIR------ER-DLVSWNSMISGYSK---------MGYAKEAVELFGRM 211 (566)
Q Consensus 156 ~~~~li~~~~~~~~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m 211 (566)
.|...+....+.++. +...++|+... .+ +...|...+..... .++++.+..+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888777766665543 23345665422 22 34567776654432 33466777888877
Q ss_pred HHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhc-------CCC-
Q 042098 212 REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA-------MVN- 283 (566)
Q Consensus 212 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~- 283 (566)
.......-..+|......-... +...+..++.+. ..+++.|...+.+ +.+
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDV-NQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHH-CTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HhCccHHHHHHHHHHHHHHHhc-CcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhc
Confidence 6421111122332211111110 111122221110 0111222222211 100
Q ss_pred -------------C--C------hhHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 042098 284 -------------K--D------VVTWNAMITAYAQNG-------LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335 (566)
Q Consensus 284 -------------~--~------~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 335 (566)
| + ...|...+.---..+ ..+.+..+|++.... ..-....|.....-+...|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC
Confidence 0 0 122333332211111 122344555555443 1223444444444445555
Q ss_pred ChhHHH-HHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-------
Q 042098 336 ALDLGK-WVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG------- 407 (566)
Q Consensus 336 ~~~~a~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~------- 407 (566)
+.+.|. .+++....... .+...|-..+...-+.|++++|..+|+++.....
T Consensus 358 ~~~~a~r~il~rAi~~~P---------------------~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~ 416 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQCIP---------------------NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM 416 (679)
T ss_dssp CCTTHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 555554 55555544321 2344455555555566666666666666554200
Q ss_pred CCCCC------------HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHh
Q 042098 408 AARPN------------DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA-GHLSEAWDFVER 474 (566)
Q Consensus 408 ~~~p~------------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 474 (566)
.-.|+ ...|...++...+.|..+.|..+|.+..+.. -.+....|...+..-.+. ++.+.|.++|+.
T Consensus 417 ~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~ 495 (679)
T 4e6h_A 417 EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLEL 495 (679)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 00121 1234444455555566666666666655420 011122332222222233 235666666665
Q ss_pred CCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 475 MPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS---NSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 475 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
..+. .+...|...+......|+.+.|..+|++++...|+ ....|..++..-...|+.+.+.++.+++.+.
T Consensus 496 ~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 496 GLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5442 23344445555555556666666666666655542 3345555555566666666666666666544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-11 Score=121.00 Aligned_cols=270 Identities=9% Similarity=0.008 Sum_probs=167.0
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCH----HHHHHHHHHhcCCCCchhHHHHHHHHHHh----C-CCchHHHHHHHH
Q 042098 192 ISGYSKMGYAKEAVELFGRMREEEFLPDE----ITLVSVLGSCGDLGDLVLGKWVEGFVVKN----K-MDLNFYMGSALI 262 (566)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li 262 (566)
...+...|++++|+..|++..+.+.. +. ..+..+...+...|+++.|...++...+. + ......++..+.
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 33444445555555555544442111 11 23344444444455555555554444332 1 112334556677
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC---------ChhHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHCC
Q 042098 263 DMYGKCGALVPARRVFDAMVNK---------DVVTWNAMITAYAQNGL-----------------SNEAIMLFNRMKYAG 316 (566)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~g 316 (566)
..|...|++++|...+++..+- ...++..+...|...|+ +++|+..+++..+..
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7777778877777777765221 23356667777777777 666666666543310
Q ss_pred CCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHH
Q 042098 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396 (566)
Q Consensus 317 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 396 (566)
...++.. ....++..+...|...|++++|.
T Consensus 214 ---------------~~~~~~~-----------------------------------~~~~~~~~la~~~~~~g~~~~A~ 243 (411)
T 4a1s_A 214 ---------------RDLGDRG-----------------------------------AQGRACGNLGNTYYLLGDFQAAI 243 (411)
T ss_dssp ---------------HHHTCHH-----------------------------------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------HHcCCHH-----------------------------------HHHHHHHHHHHHHHHcCChHHHH
Confidence 0000000 01345777888888999999999
Q ss_pred HHHHHHHhCCCCCCCC----HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHH
Q 042098 397 LLFERMSKEGGAARPN----DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYARAGHLSEA 468 (566)
Q Consensus 397 ~~~~~m~~~g~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 468 (566)
..+++..+... -.++ ..++..+...+...|++++|...+++......-..+ ..++..+...|...|++++|
T Consensus 244 ~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 244 EHHQERLRIAR-EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp HHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99888765320 0012 236777888889999999999999887764211111 45778888999999999999
Q ss_pred HHHHHhCCCC----C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 469 WDFVERMPEK----V----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 469 ~~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
.+.+++.... + ...++..+...+...|++++|...++++++..+.
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 9998877542 1 2446777889999999999999999999987543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-11 Score=117.29 Aligned_cols=136 Identities=12% Similarity=0.075 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC----HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN----DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK---- 448 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---- 448 (566)
..+..+...+...|++++|...+++..+... ..++ ..++..+...+...|++++|...+++......-.++
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 4577788888899999999999988765310 0111 236777888889999999999999887654211112
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEK----VD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
..++..+...|...|++++|...+++.... ++ ..++..+...+...|++++|...++++++..+.
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 457778889999999999999998877542 22 446777889999999999999999999987654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-12 Score=122.80 Aligned_cols=233 Identities=8% Similarity=0.031 Sum_probs=158.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 293 ITAYAQNGLSNEAIMLFNRMKYAGV-NPD----KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
...+...|++++|+..+++..+.-. .++ ..++..+...+...|+++.|...+....+ +
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~-----------------~ 172 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE-----------------I 172 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------H
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------H
Confidence 3344556666666666666544200 111 23444555555666666666555443332 2
Q ss_pred HccCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC----HHHHHHHHHHHhhhCcHHHHHHHHHHhH
Q 042098 368 FEDMPV---TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN----DVTFIGVLSACVHAGLVDEGRRLFDLMS 440 (566)
Q Consensus 368 ~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 440 (566)
+..... ....+++.+...|...|++++|...+++..+... -.++ ..++..+...|...|++++|...+++..
T Consensus 173 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 173 YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE-AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 222211 1245788899999999999999999999875320 0122 2477888889999999999999999887
Q ss_pred Hhc---CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CC---HHHHHHHHHHHHhcCC---HHHHHHHHHH
Q 042098 441 SSF---GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK----VD---EIVLGALLGACQKQKN---TDVSQRVMQL 506 (566)
Q Consensus 441 ~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---~~~~~~l~~~~~~~~~---~~~A~~~~~~ 506 (566)
+.. +..|+ ..++..+...|.+.|++++|.+.+++...- ++ ...+..+...+...|+ .++|..++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 621 22133 567889999999999999999999887541 22 2235667788888898 7777777776
Q ss_pred HHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 507 LLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 507 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
. ...|.....+..++.+|...|++++|.+.+++..+.
T Consensus 332 ~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 332 K-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6 223555668889999999999999999999998753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-11 Score=128.43 Aligned_cols=163 Identities=13% Similarity=0.096 Sum_probs=148.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYS 453 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 453 (566)
+..+|+.|...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|++.|++..+. .|+ ...|.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~ 81 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 46789999999999999999999999999854 234788999999999999999999999999865 666 77999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPE-K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
.+..+|...|++++|++.|++..+ . .+...|..+..++...|++++|++.|+++++++|+++..+..++.+|...|++
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 999999999999999999998765 2 46788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 042098 532 DDSAKMRALMRE 543 (566)
Q Consensus 532 ~~A~~~~~~~~~ 543 (566)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=121.46 Aligned_cols=167 Identities=9% Similarity=0.074 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhC------CCCCCC-CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc-----
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKE------GGAARP-NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF----- 443 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~----- 443 (566)
..++..+...|...|++++|...++++.+. + ..| ....+..+...+...|++++|..+++++....
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK--DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 457888899999999999999999998764 2 123 34567888889999999999999999987641
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 444 GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK----------V-------DEIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 444 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
+..|. ..++..+...|...|++++|.+.++++... + ....+..+...+...+.+.++...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 11222 457888999999999999999999887631 1 11222333344555566677777888
Q ss_pred HHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
......|....++..++.+|...|++++|.++++++.+.
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999999988754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-11 Score=105.35 Aligned_cols=166 Identities=14% Similarity=0.079 Sum_probs=145.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 455 (566)
...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 82 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD---AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 3467778889999999999999999988753 456788888999999999999999999999875 12346788889
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (566)
...+...|++++|.+.++++.. +.+...+..+...+...|++++|...++++.+..|.++..+..++.++...|++++
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998764 25677888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 042098 534 SAKMRALMREKGV 546 (566)
Q Consensus 534 A~~~~~~~~~~g~ 546 (566)
|.+.++++.+...
T Consensus 163 A~~~~~~~~~~~~ 175 (186)
T 3as5_A 163 ALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC
Confidence 9999999886543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-10 Score=113.22 Aligned_cols=233 Identities=9% Similarity=-0.039 Sum_probs=175.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-----CHhHH
Q 042098 260 ALIDMYGKCGALVPARRVFDAMVN-----KD----VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV-NP-----DKITL 324 (566)
Q Consensus 260 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p-----~~~~~ 324 (566)
.....+...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+.-. .+ ...++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 356677888999999998888743 22 34688888899999999999999998765311 11 12466
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 042098 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVT--NEVSWNAMISALAFNGRAHEALLLFERM 402 (566)
Q Consensus 325 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m 402 (566)
..+-..+...|++++|...+....+. ......+ ...++..+..+|...|++++|...+++.
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~-----------------~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSM-----------------AEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH-----------------HHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77778889999999998877666542 2222101 1347888999999999999999999998
Q ss_pred HhC----CCCC-CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHH
Q 042098 403 SKE----GGAA-RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK---SEHYSCMVDLYARAGH---LSEAWDF 471 (566)
Q Consensus 403 ~~~----g~~~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~ 471 (566)
.+. + . +....++..+...+...|++++|...+++..+...-..+ ...+..+...|...|+ +++|+.+
T Consensus 251 l~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 251 IAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp HHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 762 2 2 334677888999999999999999999988764211112 2345678888889999 9999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 472 VERMPEKVD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 472 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
+++....|+ ...+..+...+...|++++|...++++++..
T Consensus 329 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 329 LESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999865433 4567778899999999999999999998864
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-08 Score=103.77 Aligned_cols=434 Identities=7% Similarity=0.015 Sum_probs=270.1
Q ss_pred HHHHHHHHHhCCCCChHHHHHhh----cCCCchhHHHHhhcCC---CCCcchHHHHHHHHHcCCCC---hhHHHHHHHHH
Q 042098 41 QQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQIS---RPNEYAFNVMIRGLTTAWQK---YSHSLKLYYQM 110 (566)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~----~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~---~~~a~~~~~~m 110 (566)
..+.+.+.+. +.+...|..++ +.++++.+..+|+.+. +.....|..-+..-.+. ++ ++.+..+|+..
T Consensus 53 ~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~-~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 53 GKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK-MEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh-CCcchHHHHHHHHHHH
Confidence 3444444444 35777787777 6789999999999884 23556788888887787 88 99999999999
Q ss_pred HHCC-CCCCcccHHHHHHHHHccCCh--------hHHHHHHHHHHH-hCC-CCc-hhHHHHHHHHHHh---------cCC
Q 042098 111 KRLG-LKPDNFTYPFVFISCANLLAL--------NHGVSVHSSVFK-IGL-DED-DHVSHSLITMYAR---------CGK 169 (566)
Q Consensus 111 ~~~g-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~~~ 169 (566)
.... ..|+...|..-+....+.++. +...++|+..+. .|. .++ ...|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8863 247888888877766665554 334577777665 465 554 4678877766442 345
Q ss_pred HHHHHHHHhccCC-C--Ch-hHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHH
Q 042098 170 LDSARKVFDEIRE-R--DL-VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245 (566)
Q Consensus 170 ~~~A~~~~~~~~~-~--~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 245 (566)
++.+.++|+.... | +. .+|..... +.+.-+...+.+++.+... +++.|...+..
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~~~---------------------~y~~Ar~~~~e 267 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGELSA---------------------QYMNARSLYQD 267 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHhhH---------------------HHHHHHHHHHH
Confidence 7888999988875 2 11 23332221 1111011112222222100 00111111111
Q ss_pred HHHh--CC----------------C-------chHHHHHHHHHHHHhcC-------CHHHHHHHHhcCCC---CChhHHH
Q 042098 246 VVKN--KM----------------D-------LNFYMGSALIDMYGKCG-------ALVPARRVFDAMVN---KDVVTWN 290 (566)
Q Consensus 246 ~~~~--~~----------------~-------~~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~---~~~~~~~ 290 (566)
+... ++ + .....|...+..-...+ ..+.+..+|++... .+...|-
T Consensus 268 ~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~ 347 (679)
T 4e6h_A 268 WLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWF 347 (679)
T ss_dssp HHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHH
Confidence 0000 00 0 00123333333222211 12233445555422 3566788
Q ss_pred HHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHc
Q 042098 291 AMITAYAQNGLSNEAI-MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFE 369 (566)
Q Consensus 291 ~li~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 369 (566)
..+..+.+.|+.++|. .+|++.... ++.+...+...+......|+++.|..+++.+...... ..+.+.
T Consensus 348 ~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~----------~~~~~~ 416 (679)
T 4e6h_A 348 NMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHL----------DLAALM 416 (679)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----------Hhhhhh
Confidence 8888888889988896 999998764 3334444555666677788899999888877753100 000000
Q ss_pred cCCCC------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCCCHHHHHHHHHHHhh-hCcHHHHHHH
Q 042098 370 DMPVT------------NEVSWNAMISALAFNGRAHEALLLFERMSKE-GGAARPNDVTFIGVLSACVH-AGLVDEGRRL 435 (566)
Q Consensus 370 ~~~~~------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~~~p~~~t~~~ll~~~~~-~g~~~~A~~~ 435 (566)
.- .| ....|...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+ .++.+.|..+
T Consensus 417 ~~-~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~---~~~~~lyi~~A~lE~~~~~d~e~Ar~i 492 (679)
T 4e6h_A 417 ED-DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK---LVTPDIYLENAYIEYHISKDTKTACKV 492 (679)
T ss_dssp HH-STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG---GSCTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred hc-cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHhCCCHHHHHHH
Confidence 00 01 2346888888888899999999999999876 3 1223334332222223 3569999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V----DEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 436 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
|+...+.+ .-+...+...++.....|+.+.|..+|++.... | ....|...+.--.+.|+.+.+..+.+++.+.
T Consensus 493 fe~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 493 LELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999873 224556678888888999999999999998765 4 3467888888888999999999999999999
Q ss_pred CCCCch
Q 042098 511 ESSNSG 516 (566)
Q Consensus 511 ~p~~~~ 516 (566)
.|+++.
T Consensus 571 ~P~~~~ 576 (679)
T 4e6h_A 571 FPEVNK 576 (679)
T ss_dssp STTCCH
T ss_pred CCCCcH
Confidence 998753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-10 Score=105.34 Aligned_cols=185 Identities=8% Similarity=0.005 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChh-HHH
Q 042098 303 NEAIMLFNRMKYAGVNPD-KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV-SWN 380 (566)
Q Consensus 303 ~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 380 (566)
++|..+|++..+. +.|+ ...+..+...+...|+++.|..+++.+.+... .+.. +|.
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---------------------~~~~~~~~ 138 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED---------------------IDPTLVYI 138 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS---------------------SCTHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc---------------------cCccHHHH
Confidence 5666666665552 1232 23444444444444444444444444443211 1222 577
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh-hhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV-HAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDL 458 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~-~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~ 458 (566)
.++..+.+.|++++|..+|++..+.. +++...|........ ..|+.++|..+|+...+. .| +...+..++..
T Consensus 139 ~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~ 212 (308)
T 2ond_A 139 QYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDY 212 (308)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 77777777778888888888777653 233333433322221 257788888888777765 23 35667777777
Q ss_pred HHhcCCHHHHHHHHHhCCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 459 YARAGHLSEAWDFVERMPE----KV--DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
+.+.|++++|..+|++... .| ....|..++....+.|+.+.|..+++++.+..|++.
T Consensus 213 ~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 213 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 7777888888888777654 22 345677777777777888888888888877777654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-10 Score=99.65 Aligned_cols=169 Identities=12% Similarity=0.042 Sum_probs=136.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHH
Q 042098 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDA 364 (566)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A 364 (566)
+...|..+...+.+.|++++|+..|++..+. .|+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~-------------------------------------------- 37 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPN-------------------------------------------- 37 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT--------------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------------------------------
Confidence 4556777777777777777777777776653 232
Q ss_pred HHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcC
Q 042098 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444 (566)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 444 (566)
+..++..+..+|.+.|++++|...+.+..... +-+...+..+...+...++++.|...++.....
T Consensus 38 ----------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-- 102 (184)
T 3vtx_A 38 ----------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-- 102 (184)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 56678888888999999999999999988764 345667777778888899999999999988865
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 445 LIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 445 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
.|+ ...+..+..+|.+.|++++|++.|++..+ +.+...|..+..++.+.|++++|.+.|+++++.+|+++
T Consensus 103 -~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 103 -NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred -CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 444 67888899999999999999999998764 24677889999999999999999999999999988754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.5e-10 Score=104.29 Aligned_cols=217 Identities=9% Similarity=0.002 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHh-------ccCCh-------hHHHHHHHHHHHhCCCCccccCCHHHHHHHH
Q 042098 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACA-------SIGAL-------DLGKWVDKYASQRGLRHDIFCGSIDDALKVF 368 (566)
Q Consensus 303 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 368 (566)
++|..+|++..... +-+...|..+...+. ..|+. ++|..+++...+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~------------------ 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------------------ 93 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT------------------
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH------------------
Confidence 56777777776642 223445555444443 34554 5566555555541
Q ss_pred ccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-HH-HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCC
Q 042098 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-DV-TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446 (566)
Q Consensus 369 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (566)
+.+.+...|..++..+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+. .
T Consensus 94 --~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~ 164 (308)
T 2ond_A 94 --LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---A 164 (308)
T ss_dssp --TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---T
T ss_pred --hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---C
Confidence 11235678999999999999999999999999984 354 33 7888899999999999999999999864 3
Q ss_pred CC-hhHHHHHHHHHH-hcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-CchhH
Q 042098 447 PK-SEHYSCMVDLYA-RAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI---ESS-NSGNY 518 (566)
Q Consensus 447 p~-~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~ 518 (566)
|+ ...|........ ..|++++|.++|++.... .+...|..++..+.+.|+.++|..+|+++++. .|+ +...|
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 43 445544433322 379999999999988653 46788899999999999999999999999996 443 66789
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 519 VISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
..++..+.+.|+.++|..+++++.+....
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999876554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.6e-10 Score=107.65 Aligned_cols=131 Identities=10% Similarity=0.115 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC---
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSK-----EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK--- 448 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--- 448 (566)
.++..+..+|...|++++|...+++..+ .. +....++..+...+.+.|++++|...+++..+...-..+
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP---DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC---hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4677888889999999999999988876 32 233667788888889999999999999888765222122
Q ss_pred hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 449 SEHYSCMVDLYARAGH---LSEAWDFVERMPEKVD-EIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
...+..+...|...|+ +.+|+..+++....|+ ...+..+...+...|++++|...++++.+.
T Consensus 300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 300 KELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2345555566666666 7777777776543222 234445566666677777777766666553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.7e-10 Score=108.11 Aligned_cols=167 Identities=8% Similarity=0.004 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CC-CCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcC--CCCC-h
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGA--AR-PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG--LIPK-S 449 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--~~-p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~p~-~ 449 (566)
..+++.+...|...|++++|...+++..+.... .+ ....++..+...|...|++++|...+++...... ..|. .
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 346788889999999999999999887653100 11 1235677888899999999999999999876210 1233 6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC------CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHH
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE------KVD-EIVLGALLGACQKQKN---TDVSQRVMQLLLEIESSNSGNYV 519 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~ 519 (566)
.++..+...|.+.|++++|...+++... .+. ...+..+...+...++ ..+|...+++. ...|.....+.
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 340 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHH
Confidence 6788899999999999999999987643 122 3345556677777888 77777777662 12244556788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Q 042098 520 ISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 520 ~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.++.+|...|++++|.+.++++.+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999998864
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-11 Score=119.69 Aligned_cols=168 Identities=10% Similarity=-0.030 Sum_probs=151.2
Q ss_pred CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhH
Q 042098 373 VTNEVSWNAMISALAFNGRA-HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 451 (566)
+.+...+..+...+...|++ ++|+..|++..+.. +-+...+..+...|...|++++|...|++..+. .|+...
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~ 172 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH---CKNKVS 172 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCCHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCHHH
Confidence 34678899999999999999 99999999999864 345788999999999999999999999999854 688888
Q ss_pred HHHHHHHHHhc---------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCC
Q 042098 452 YSCMVDLYARA---------GHLSEAWDFVERMPE--KVDEIVLGALLGACQKQ--------KNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 452 ~~~l~~~~~~~---------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~p 512 (566)
+..+..+|... |++++|++.+++... ..+...|..+..++... |++++|...|+++++.+|
T Consensus 173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 99999999999 999999999998764 24678899999999998 999999999999999999
Q ss_pred ---CCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 513 ---SNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 513 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.++..+..++.+|...|++++|.+.++++.+...
T Consensus 253 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999987644
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-09 Score=101.95 Aligned_cols=265 Identities=12% Similarity=0.035 Sum_probs=172.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCC----CCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----hHHHHHH
Q 042098 262 IDMYGKCGALVPARRVFDAMV----NKDV----VTWNAMITAYAQNGLSNEAIMLFNRMKYAGV-NPDK----ITLIGVL 328 (566)
Q Consensus 262 i~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~ll 328 (566)
...+...|++++|...+++.. ..+. .+++.+...+...|++++|...+++...... .++. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334445666666666655431 1111 1344555566667777777777766644210 0111 1234445
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042098 329 SACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPV---T-NEVSWNAMISALAFNGRAHEALLLFERMSK 404 (566)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 404 (566)
..+...|++++|...++..... ...... | ....+..+...+...|++++|...+++...
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~-----------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQL-----------------INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 163 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH-----------------HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5566677777777666554432 111111 1 234567788889999999999999999876
Q ss_pred CCCCCCC--CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhCCC
Q 042098 405 EGGAARP--NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS-----CMVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 405 ~g~~~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
......+ ...++..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++...
T Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 164 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 4311111 245677788889999999999999998876421111111221 233457899999999999999875
Q ss_pred C-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----C-chhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 478 K-VD-----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESS-----N-SGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 478 ~-~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
. +. ...+..+...+...|++++|...++++....+. + ...+..++.++...|++++|...+++..+
T Consensus 244 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 244 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3 21 234567778999999999999999999876432 1 24677889999999999999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-10 Score=103.96 Aligned_cols=169 Identities=10% Similarity=-0.035 Sum_probs=145.6
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHH
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHY 452 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~ 452 (566)
.++..+......+...|++++|+..|++..+.. .+++...+..+..++...|++++|...+++..+. .|+ ...+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~ 79 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAY 79 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHH
Confidence 356788888999999999999999999999875 2377788877888999999999999999998864 565 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC-CC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHH
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPEK-VD-E-------IVLGALLGACQKQKNTDVSQRVMQLLLEIESS--NSGNYVIS 521 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l 521 (566)
..+..+|...|++++|++.+++.... |+ . ..|..+...+...|++++|++.++++++.+|. ++..+..+
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 89999999999999999999987652 33 3 45777888899999999999999999999999 88999999
Q ss_pred HHHHHhCCCh---------------------------HHHHHHHHHHHhCCCc
Q 042098 522 SKIFANLKMW---------------------------DDSAKMRALMREKGVS 547 (566)
Q Consensus 522 ~~~~~~~g~~---------------------------~~A~~~~~~~~~~g~~ 547 (566)
+.+|...|+. ++|...+++..+....
T Consensus 160 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999988 8999999998876543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.6e-11 Score=111.64 Aligned_cols=242 Identities=13% Similarity=0.073 Sum_probs=137.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--------C---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC
Q 042098 257 MGSALIDMYGKCGALVPARRVFDAMVN--------K---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYA------GVNP 319 (566)
Q Consensus 257 ~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p 319 (566)
++..+...+...|++++|..+|+++.+ . ....+..+...+...|++++|...+++.... +-.|
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 344445555555555555555554422 1 1234455555556666666666666555432 1111
Q ss_pred -CHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHH
Q 042098 320 -DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398 (566)
Q Consensus 320 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 398 (566)
...++..+...+...|++++|...+....+.... .+..-.+.....+..+...+...|++++|..+
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK-------------VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY 175 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-------------hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334555555666666666666655554432100 00000001345688889999999999999999
Q ss_pred HHHHHhC------CCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc------CCCCCh-------hHHHHHHHH
Q 042098 399 FERMSKE------GGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSF------GLIPKS-------EHYSCMVDL 458 (566)
Q Consensus 399 ~~~m~~~------g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~p~~-------~~~~~l~~~ 458 (566)
++++.+. + ..|+ ..++..+...+...|++++|...++++.+.. ...+.. ..+..+...
T Consensus 176 ~~~a~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 176 YQRALEIYQTKLGP--DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHHHTSCT--TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 9998764 1 1233 4567888889999999999999999988631 112221 122223333
Q ss_pred HHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 459 YARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
+...+.+.+|...++..... ....++..+..++...|++++|.+.+++++++.|.
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 44555566666666666543 34567888999999999999999999999988765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-09 Score=96.03 Aligned_cols=209 Identities=8% Similarity=0.007 Sum_probs=151.7
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHH
Q 042098 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDD 363 (566)
Q Consensus 284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 363 (566)
.|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|...+....+....
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------- 74 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---------- 74 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----------
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----------
Confidence 3567788888899999999999999999988754467777777777888888888888777777664322
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-------HHHHHHHHHHhhhCcHHHHHHHH
Q 042098 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND-------VTFIGVLSACVHAGLVDEGRRLF 436 (566)
Q Consensus 364 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-------~t~~~ll~~~~~~g~~~~A~~~~ 436 (566)
+...|..+..+|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...|
T Consensus 75 -----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 75 -----------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV---PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp -----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 46678888888888999999999998888753 2233 34666777778888889999888
Q ss_pred HHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 437 DLMSSSFGLIPK---SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 437 ~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
++..+ +.|+ ...+..+..+|...|+. +++++.. ..+...+.... ....+.+++|...++++++..
T Consensus 141 ~~al~---~~p~~~~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 141 KHATD---VTSKKWKTDALYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHTT---SSCHHHHHHHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHh---cCCCcccHHHHHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 88874 3565 45677777777665543 2222211 12334443333 234466899999999999999
Q ss_pred CCCchhHHHHHHHHH
Q 042098 512 SSNSGNYVISSKIFA 526 (566)
Q Consensus 512 p~~~~~~~~l~~~~~ 526 (566)
|+++.+...+..+..
T Consensus 211 p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 211 PNRTEIKQMQDQVKA 225 (228)
T ss_dssp TTCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH
Confidence 999988888876654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-09 Score=96.29 Aligned_cols=170 Identities=7% Similarity=-0.002 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh----h
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS----E 450 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~ 450 (566)
...+..+...+...|++++|+..|+++.+..+ ..|. ...+..+..++.+.|++++|+..|+++.+. .|+. .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~---~P~~~~~~~ 79 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL---NPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCCcHHH
Confidence 44566677788899999999999999987541 1121 356777888899999999999999999876 3442 2
Q ss_pred HHHHHHHHHHh------------------cCCHHHHHHHHHhCCCC-CCHH-HH-----------------HHHHHHHHh
Q 042098 451 HYSCMVDLYAR------------------AGHLSEAWDFVERMPEK-VDEI-VL-----------------GALLGACQK 493 (566)
Q Consensus 451 ~~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~-~~~~-~~-----------------~~l~~~~~~ 493 (566)
.+..+..++.. .|++++|+..|+++... |+.. .+ ..+...+.+
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555543 57899999999988764 4432 22 234567889
Q ss_pred cCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 042098 494 QKNTDVSQRVMQLLLEIESSNS---GNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549 (566)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 549 (566)
.|+++.|...|+++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+....
T Consensus 160 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 9999999999999999999886 5788999999999999999999999988766543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-08 Score=98.57 Aligned_cols=135 Identities=13% Similarity=0.039 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH----HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC---h
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI----GVLSACVHAGLVDEGRRLFDLMSSSFGLIPK---S 449 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~----~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~ 449 (566)
.++..+...+...|++++|...+++................ ..+..+...|++++|...++..... ...+. .
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~ 253 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhH
Confidence 35667777888888888888888887653200111111111 2233466788899998888877643 21111 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C---CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPEK----V---DE-IVLGALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~---~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
..+..+...+...|++++|...+++.... + +. ..+..+..++...|+.++|...+++++...+
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 24567778888889999988888776431 1 12 2555566788888999999999999887643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-08 Score=93.32 Aligned_cols=135 Identities=11% Similarity=0.119 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC-----CHHHHHHHHHHH--hhhC--cHHHHHHHHHHhHHhcCCC
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP-----NDVTFIGVLSAC--VHAG--LVDEGRRLFDLMSSSFGLI 446 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p-----~~~t~~~ll~~~--~~~g--~~~~A~~~~~~~~~~~~~~ 446 (566)
...+-.++..+.+.|+.+.|.+.+++|.+ ..| +..+...|..++ ...| ++..|..+|+++... .
T Consensus 136 lea~~l~vqi~L~~~r~d~A~k~l~~~~~----~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~ 208 (310)
T 3mv2_B 136 TELLLLAIEVALLNNNVSTASTIFDNYTN----AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---F 208 (310)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---C
Confidence 45566778889999999999999999987 447 356666666663 3334 899999999998754 4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCC------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPE------------KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 447 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
|+..+...++.++.+.|++++|.+.++.+.. ..++.+...++......|+ +|.++++++.+..|++
T Consensus 209 p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 209 PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 5533444555588999999999999986544 2345556566666666777 8899999999999998
Q ss_pred chhHH
Q 042098 515 SGNYV 519 (566)
Q Consensus 515 ~~~~~ 519 (566)
+.+..
T Consensus 287 p~i~d 291 (310)
T 3mv2_B 287 AFIKH 291 (310)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 85543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-09 Score=92.41 Aligned_cols=155 Identities=13% Similarity=-0.009 Sum_probs=130.5
Q ss_pred CCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHH
Q 042098 359 GSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435 (566)
Q Consensus 359 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~ 435 (566)
|++++|...|+... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 22 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~ 98 (186)
T 3as5_A 22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---PDNVKVATVLGLTYVQVQKYDLAVPL 98 (186)
T ss_dssp TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 55666666666654 3467889999999999999999999999998864 45678888899999999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 436 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
++.+.+. .+.+...+..+...+...|++++|.+.+++.... .+...+..+...+...|++++|...++++.+..|+
T Consensus 99 ~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 99 LIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999875 2335778888999999999999999999987642 45788889999999999999999999999999888
Q ss_pred CchhH
Q 042098 514 NSGNY 518 (566)
Q Consensus 514 ~~~~~ 518 (566)
+....
T Consensus 177 ~~~~~ 181 (186)
T 3as5_A 177 ASVEL 181 (186)
T ss_dssp CCGGG
T ss_pred chhhH
Confidence 76543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-08 Score=92.94 Aligned_cols=167 Identities=11% Similarity=0.083 Sum_probs=134.4
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-----
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA-RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP----- 447 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p----- 447 (566)
++..++..+..++...|++++|++++.+.+..| . .-+...+..++..+.+.|+.+.|.+.++.|.+. .|
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~--~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~ 172 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDND--EAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSG 172 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS--CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---Ccccccc
Confidence 455566688899999999999999999988766 2 125677888899999999999999999999865 66
Q ss_pred ChhHHHHHHHH--HHhcC--CHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----------CC
Q 042098 448 KSEHYSCMVDL--YARAG--HLSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI----------ES 512 (566)
Q Consensus 448 ~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~p 512 (566)
+..+...|+.+ ....| ++.+|..+|+++..+ |+..+-..++.++...|++++|++.++.+.+. +|
T Consensus 173 ~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 173 DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 35555566655 33334 999999999999876 65445555666899999999999999988876 48
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 513 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
+++.++..++.+....|+ +|.++++++.+..+.
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 899999888888888897 899999999887643
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=5e-09 Score=97.33 Aligned_cols=147 Identities=10% Similarity=-0.058 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHc-CChHHHHHHHHHHHhCCCCC-CC--CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh---
Q 042098 377 VSWNAMISALAFN-GRAHEALLLFERMSKEGGAA-RP--NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS--- 449 (566)
Q Consensus 377 ~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~~-~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--- 449 (566)
.+++.+...|... |++++|+..|++..+..+.. .+ ...++..+...+...|++++|...|++..+...-.+..
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 3577788888886 99999999998887632000 00 03567788888999999999999999888651111111
Q ss_pred --hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCchhH
Q 042098 450 --EHYSCMVDLYARAGHLSEAWDFVERMPEK-VDE------IVLGALLGACQ--KQKNTDVSQRVMQLLLEIESSNSGNY 518 (566)
Q Consensus 450 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~------~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (566)
..|..+..++...|++++|+..|++...- |+. ..+..++.++. ..+++++|+..|+++..++|.+...+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 15677778888899999999999887652 332 12344555554 34678888888888777777655444
Q ss_pred HHHHH
Q 042098 519 VISSK 523 (566)
Q Consensus 519 ~~l~~ 523 (566)
..+-.
T Consensus 278 ~~~k~ 282 (292)
T 1qqe_A 278 NKIKE 282 (292)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.11 E-value=8.4e-10 Score=101.84 Aligned_cols=169 Identities=8% Similarity=0.054 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhC-----CCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc-----CC
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKE-----GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF-----GL 445 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~ 445 (566)
..++..+...|...|++++|...+++.... +...+....++..+...+...|++++|...+++..+.. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 456888999999999999999999998764 10012235678888889999999999999999887641 11
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----------C-CHHHHHHHHHHHHhcCC------HHHHHHHHHHH
Q 042098 446 IPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK----------V-DEIVLGALLGACQKQKN------TDVSQRVMQLL 507 (566)
Q Consensus 446 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~------~~~A~~~~~~~ 507 (566)
.|+ ..++..+...|...|++++|.+.+++.... + ....|..+.......+. +..+...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 232 567888999999999999999999876531 1 22233333333333222 23333333332
Q ss_pred HhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 508 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
....|....++..++.+|...|++++|.++++++.+.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2233556678899999999999999999999988764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.5e-09 Score=97.61 Aligned_cols=169 Identities=7% Similarity=0.025 Sum_probs=137.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC----HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN----DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK- 448 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~- 448 (566)
.+...+-.+...+.+.|++++|...|+++.+.. |+ ...+..+..++...|++++|...|+...+.+.-.|.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 456677788888999999999999999999864 33 567888888999999999999999999876222223
Q ss_pred hhHHHHHHHHHHh--------cCCHHHHHHHHHhCCCC-CC-HHHH-----------------HHHHHHHHhcCCHHHHH
Q 042098 449 SEHYSCMVDLYAR--------AGHLSEAWDFVERMPEK-VD-EIVL-----------------GALLGACQKQKNTDVSQ 501 (566)
Q Consensus 449 ~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~-~~-~~~~-----------------~~l~~~~~~~~~~~~A~ 501 (566)
...+..+..++.. .|++++|+..|+++... |+ .... ..+...+.+.|++++|+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4567778888888 99999999999987652 43 2223 45578899999999999
Q ss_pred HHHHHHHhhCCCC---chhHHHHHHHHHhC----------CChHHHHHHHHHHHhCCC
Q 042098 502 RVMQLLLEIESSN---SGNYVISSKIFANL----------KMWDDSAKMRALMREKGV 546 (566)
Q Consensus 502 ~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~ 546 (566)
..++++++..|++ +..+..++.+|... |++++|...++++.+...
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 9999999999885 45888999999877 999999999999987654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-09 Score=85.39 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=81.7
Q ss_pred HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHh
Q 042098 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQK 493 (566)
Q Consensus 416 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 493 (566)
+..+...+...|++++|..+++.+.+. . +.+...+..+...+...|++++|...++++.. ..+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444455555555555555555443 1 11234444555555555555555555555432 1344566667777778
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
.|++++|.+.++++.+..|.++..+..++.++...|++++|.+.++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888888888888888888888776643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.9e-09 Score=110.61 Aligned_cols=130 Identities=14% Similarity=0.077 Sum_probs=85.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYS 453 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 453 (566)
+..+|+.+..+|.+.|++++|+..|++..+.. +-+...|..+..++...|++++|++.|++..+. .|+ ...|.
T Consensus 42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~ 115 (723)
T 4gyw_A 42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---NPAFADAHS 115 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 34456666666777777777777777776643 223566666777777777777777777766654 444 55667
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPE-K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
.+..+|.+.|++++|++.|++..+ . .+...+..+..++...|++++|.+.++++++.
T Consensus 116 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 116 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 777777777777777777776543 2 34566667777777777777777777777664
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-09 Score=100.42 Aligned_cols=168 Identities=8% Similarity=-0.047 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CC--CHHHHHHHHHHHhhh-CcHHHHHHHHHHhHHhcCCCCC---
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAA-RP--NDVTFIGVLSACVHA-GLVDEGRRLFDLMSSSFGLIPK--- 448 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~p--~~~t~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~p~--- 448 (566)
..+|+.+..+|...|++++|+..+++..+..... .+ ...++..+...|... |++++|+..+++..+...-..+
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 3468888899999999999999999886532000 11 145788888899996 9999999999998864211111
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C---CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-
Q 042098 449 -SEHYSCMVDLYARAGHLSEAWDFVERMPEK-V---DE-----IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN- 517 (566)
Q Consensus 449 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~- 517 (566)
..++..+...|.+.|++++|+..|++.... | .. ..|..+..++...|++++|...+++++++.|.....
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 356888999999999999999999987542 2 21 156777888999999999999999999998875543
Q ss_pred ----HHHHHHHHH--hCCChHHHHHHHHHHHh
Q 042098 518 ----YVISSKIFA--NLKMWDDSAKMRALMRE 543 (566)
Q Consensus 518 ----~~~l~~~~~--~~g~~~~A~~~~~~~~~ 543 (566)
+..++.++. ..+++++|.+.++++.+
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 344566664 45778888888865543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-08 Score=88.40 Aligned_cols=163 Identities=8% Similarity=0.021 Sum_probs=140.4
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC----cHHHHHHHHHHhHHhcCCCCCh
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG----LVDEGRRLFDLMSSSFGLIPKS 449 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g----~~~~A~~~~~~~~~~~~~~p~~ 449 (566)
.+..++..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|...|++..+. + ++
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~ 85 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SK 85 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CH
Confidence 467788999999999999999999999999876 56677777777777 6 899999999998764 3 56
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchh
Q 042098 450 EHYSCMVDLYAR----AGHLSEAWDFVERMPEKVD----EIVLGALLGACQK----QKNTDVSQRVMQLLLEIESSNSGN 517 (566)
Q Consensus 450 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~ 517 (566)
..+..|...|.. .+++++|++.|++.....+ ...+..|...|.. .++.++|...|+++.+. |.++..
T Consensus 86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a 164 (212)
T 3rjv_A 86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYA 164 (212)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHH
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHH
Confidence 778888888887 8899999999999987644 7888999999988 88999999999999988 677788
Q ss_pred HHHHHHHHHhC-C-----ChHHHHHHHHHHHhCCCc
Q 042098 518 YVISSKIFANL-K-----MWDDSAKMRALMREKGVS 547 (566)
Q Consensus 518 ~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g~~ 547 (566)
+..|+.+|... | ++++|.+.+++..+.|..
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 99999999864 3 999999999999988764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.8e-10 Score=93.13 Aligned_cols=140 Identities=9% Similarity=0.004 Sum_probs=104.4
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 042098 384 SALAFNGRAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYAR 461 (566)
Q Consensus 384 ~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 461 (566)
..+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|++.|++..+. .|+ ..+|..+..+|.+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~----~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS----PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYEL 77 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS----HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhccc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 3444567788888888877653 233 344556777788888888888888888765 554 6778888888888
Q ss_pred cCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhCCCCchhHHHHHHHHHhCCC
Q 042098 462 AGHLSEAWDFVERMPE-KV-DEIVLGALLGACQKQKNTDVSQR-VMQLLLEIESSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 462 ~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (566)
.|++++|+..|++..+ .| +...|..+...+.+.|+.++|.+ .++++++++|.++.+|.....++...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888887764 23 56778888888888888876555 4588888889888888888888887775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.1e-09 Score=94.19 Aligned_cols=195 Identities=13% Similarity=-0.012 Sum_probs=129.3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHH
Q 042098 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDD 363 (566)
Q Consensus 284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 363 (566)
.+...+..+...+.+.|++++|+..|+++.+.. |+...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~---------------------------------------- 50 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEW---------------------------------------- 50 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTT----------------------------------------
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcc----------------------------------------
Confidence 345566666677777778888887777776642 32100
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh--------hCcHHHHHHH
Q 042098 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH--------AGLVDEGRRL 435 (566)
Q Consensus 364 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~--------~g~~~~A~~~ 435 (566)
....+..+..+|.+.|++++|...|++..+..+.-+.....+..+..++.. .|++++|...
T Consensus 51 -----------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~ 119 (261)
T 3qky_A 51 -----------AADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEA 119 (261)
T ss_dssp -----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 033455566677777777777777777776531011113445556666666 7777777777
Q ss_pred HHHhHHhcCCCCC-hhHH-----------------HHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHH
Q 042098 436 FDLMSSSFGLIPK-SEHY-----------------SCMVDLYARAGHLSEAWDFVERMPEK-VD----EIVLGALLGACQ 492 (566)
Q Consensus 436 ~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~ 492 (566)
|+++.+. .|+ .... ..+...|.+.|++++|+..|+++... |+ ...+..+..++.
T Consensus 120 ~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 120 FQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp HHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 7777765 333 2222 55678899999999999999987642 43 456667777787
Q ss_pred hc----------CCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhCCChHHH
Q 042098 493 KQ----------KNTDVSQRVMQLLLEIESSNSG---NYVISSKIFANLKMWDDS 534 (566)
Q Consensus 493 ~~----------~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A 534 (566)
.. |++++|...++++++..|+++. ....+..++...|+++++
T Consensus 197 ~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 197 AYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 66 8999999999999999999864 444555555555555443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-08 Score=93.12 Aligned_cols=134 Identities=11% Similarity=0.080 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhC-----CCCCCC-CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc------
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKE-----GGAARP-NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF------ 443 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~------ 443 (566)
..++..+...|...|++++|...+++..+. +. ..| ...++..+...+...|++++|...+++..+..
T Consensus 127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP-DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 456777888888999999999999888764 10 123 24567788888999999999999998887531
Q ss_pred CCCCC-hhHHHHHHHHHHhcC------CHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 444 GLIPK-SEHYSCMVDLYARAG------HLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 444 ~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
...+. ...+..+...+...+ .+.++...++..... ....++..+...+...|++++|...++++++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 233444444433322 344555555555433 23456788889999999999999999998864
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6e-09 Score=96.42 Aligned_cols=175 Identities=8% Similarity=-0.036 Sum_probs=141.9
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
.....+....+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS---NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 33444444444566778888899999999999999999999864 345678888999999999999999999988754
Q ss_pred cCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chh
Q 042098 443 FGLIPKSEHYS-CMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN--SGN 517 (566)
Q Consensus 443 ~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~ 517 (566)
.|+..... .....+...++.++|+..+++... ..+...+..+...+...|++++|...++++++.+|.+ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 56644332 233346677888889988887754 2467888899999999999999999999999999988 889
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 518 YVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
+..++.++...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999998887653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-08 Score=81.69 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 457 (566)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++... . +.+...+..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC---CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHH
Confidence 57788899999999999999999998864 346778888899999999999999999999875 2 334678888999
Q ss_pred HHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 458 LYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
.+...|++++|.+.++++... .+...+..+...+...|++++|...++++.+..|.+
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999987642 457788889999999999999999999999988863
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-08 Score=104.93 Aligned_cols=158 Identities=12% Similarity=0.032 Sum_probs=123.8
Q ss_pred CCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHH
Q 042098 359 GSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435 (566)
Q Consensus 359 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~ 435 (566)
|++++|.+.|++.. +.+...|..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH---PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS---TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77889999998876 4567889999999999999999999999998864 34577888899999999999999999
Q ss_pred HHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 042098 436 FDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQ---KNTDVSQRVMQLLLE 509 (566)
Q Consensus 436 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~ 509 (566)
+++..+. .|+ ...+..+..+|.+.|++++|.+.+++.... .+...+..+...+... |+.++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998875 454 678889999999999999999999987642 4567888888999999 999999999999999
Q ss_pred hCCCCchhHHHHH
Q 042098 510 IESSNSGNYVISS 522 (566)
Q Consensus 510 ~~p~~~~~~~~l~ 522 (566)
.+|.+...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999888887776
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.7e-09 Score=110.31 Aligned_cols=151 Identities=11% Similarity=-0.044 Sum_probs=130.7
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhH
Q 042098 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEH 451 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~ 451 (566)
+.+...+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+. .|+ ...
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~ 503 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT---FPGELAP 503 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCSHH
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHH
Confidence 3467789999999999999999999999999864 346778888899999999999999999999875 565 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
+..+..+|.+.|++++ ++.|++... ..+...|..+..++.+.|++++|.+.++++++.+|.+...+..++.++...|
T Consensus 504 ~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 504 KLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 8999999999999999 999998764 2467788999999999999999999999999999999999999999998766
Q ss_pred C
Q 042098 530 M 530 (566)
Q Consensus 530 ~ 530 (566)
+
T Consensus 583 ~ 583 (681)
T 2pzi_A 583 S 583 (681)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-07 Score=87.04 Aligned_cols=164 Identities=12% Similarity=-0.031 Sum_probs=126.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH----HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hh
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV----TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SE 450 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~----t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 450 (566)
+...+..+...|++++|..++++..+... ..|+.. .+..+...+...|++++|...++.......-.++ ..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 33446788899999999999999987431 223322 2334666677788999999999999874122223 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-------C-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------c
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE-------K-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN------S 515 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~ 515 (566)
+++.+...|...|++++|+..++++.. . + ...++..+...|.+.|++++|...++++++..+.. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 689999999999999999999988762 1 1 23477888999999999999999999999875332 5
Q ss_pred hhHHHHHHHHHhCCC-hHHHHHHHHHHHh
Q 042098 516 GNYVISSKIFANLKM-WDDSAKMRALMRE 543 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 543 (566)
.+|..++.+|...|+ +++|.+.++++.+
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 789999999999995 6999999988753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-09 Score=88.92 Aligned_cols=125 Identities=13% Similarity=-0.017 Sum_probs=104.6
Q ss_pred HHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 042098 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQK 495 (566)
Q Consensus 419 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 495 (566)
|...+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|++.|++... +.+...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456678899999999987763 3555 55677899999999999999999999865 346788999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHH-HHHHHhCCC
Q 042098 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM-RALMREKGV 546 (566)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~g~ 546 (566)
++++|+..|+++++.+|.++.++..++.+|.+.|++++|.+. ++++.+..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999887765 588877544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.93 E-value=7e-09 Score=88.19 Aligned_cols=160 Identities=11% Similarity=0.030 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 457 (566)
.+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++..... .|+...+..+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~ 81 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAK 81 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHH
Confidence 45567778889999999999999987753 345678888889999999999999999988754 444333332222
Q ss_pred H-HHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chhHHHHHHHHHhCCChH
Q 042098 458 L-YARAGHLSEAWDFVERMPE-KV-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN--SGNYVISSKIFANLKMWD 532 (566)
Q Consensus 458 ~-~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~ 532 (566)
. +...+...+|+..+++... .| +...+..+..++...|++++|...++++++.+|.. +..+..++.++...|+.+
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 2 2222333456777777654 24 57888889999999999999999999999999875 568999999999999999
Q ss_pred HHHHHHHHHHh
Q 042098 533 DSAKMRALMRE 543 (566)
Q Consensus 533 ~A~~~~~~~~~ 543 (566)
+|...+++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999987653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=6.7e-09 Score=85.16 Aligned_cols=103 Identities=9% Similarity=0.005 Sum_probs=86.3
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 444 GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 444 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
.+.|+ ...+..+...+.+.|++++|+..|++... +.+...|..+..++...|++++|+..|+++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44555 45677777888888888888888888764 2467788888899999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 521 SSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
++.+|...|++++|.+.++++.+...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999887654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-08 Score=80.34 Aligned_cols=106 Identities=11% Similarity=-0.031 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGAC 491 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 491 (566)
.+......+.+.|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.+++... ..+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3444455555555555555555555543 232 44455555555555555555555554432 12344455555555
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
...|++++|.+.|+++++++|++..++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 55555555555555555555555555444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.8e-08 Score=100.06 Aligned_cols=153 Identities=10% Similarity=0.003 Sum_probs=120.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHH
Q 042098 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSE 467 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 467 (566)
.|++++|...+++..+.. +-+...+..+...+...|++++|.+.+++..+. .|+ ...+..+..+|...|++++
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHH
Confidence 478899999999998754 345788889999999999999999999998854 565 6788999999999999999
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC---CChHHHHHHHHHHH
Q 042098 468 AWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL---KMWDDSAKMRALMR 542 (566)
Q Consensus 468 A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 542 (566)
|++.+++... ..+...+..+..++...|++++|.+.++++++.+|.+...+..++.++... |++++|.+.++++.
T Consensus 76 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 76 AAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999998765 245788899999999999999999999999999999999999999999999 99999999999988
Q ss_pred hCCCc
Q 042098 543 EKGVS 547 (566)
Q Consensus 543 ~~g~~ 547 (566)
+.+..
T Consensus 156 ~~~p~ 160 (568)
T 2vsy_A 156 AQGVG 160 (568)
T ss_dssp HHTCC
T ss_pred hcCCc
Confidence 76554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-08 Score=106.44 Aligned_cols=153 Identities=9% Similarity=-0.066 Sum_probs=134.2
Q ss_pred HHcCChHHHHHHHHHHH--------hCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 042098 387 AFNGRAHEALLLFERMS--------KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVD 457 (566)
Q Consensus 387 ~~~~~~~~A~~~~~~m~--------~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 457 (566)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...+++..+. .|+ ...+..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF---SESVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc---ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHH
Confidence 67899999999999998 432 345677888889999999999999999999875 454 678899999
Q ss_pred HHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHH
Q 042098 458 LYARAGHLSEAWDFVERMPE-K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535 (566)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 535 (566)
+|...|++++|++.|++... . .+...|..+..++.+.|++++ ++.|+++++.+|.+...+..++.+|.+.|++++|.
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999764 2 456788899999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 042098 536 KMRALMREKGV 546 (566)
Q Consensus 536 ~~~~~~~~~g~ 546 (566)
+.++++.+.+.
T Consensus 555 ~~~~~al~l~P 565 (681)
T 2pzi_A 555 RTLDEVPPTSR 565 (681)
T ss_dssp HHHHTSCTTST
T ss_pred HHHHhhcccCc
Confidence 99987765543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.3e-07 Score=86.68 Aligned_cols=156 Identities=12% Similarity=-0.003 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CCCC--HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hh
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGA-ARPN--DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SE 450 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 450 (566)
+|+.+...|...|++++|+..|++..+.-.. -.|. ..++..+...|.. |++++|+..+++......-..+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3555555666666666666666655432000 0111 2445555566666 6777776666666543110001 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-----
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPEK----VD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN----- 517 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----- 517 (566)
++..+...|.+.|++++|+..|++.... +. ...+..++.++...|++++|...+++++ ..|.....
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 5566666677777777777766665431 11 1244445556666677777777777777 66654322
Q ss_pred HHHHHHHHHhCCChHHHHH
Q 042098 518 YVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~ 536 (566)
...++.++ ..|+.+.+.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 23334433 4555555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=9.1e-08 Score=84.03 Aligned_cols=130 Identities=13% Similarity=-0.009 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSC 454 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 454 (566)
...+..+...+...|++++|...|++. +.|+...+..+...+...|++++|...++...+. .| +...+..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~ 76 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAV------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHH
Confidence 344566777788888888888888754 5678888888888888888888888888888765 34 3667788
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-C-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK-V-----------------DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~-~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
+..+|...|++++|++.|++.... | ....+..+..++...|++++|...++++++..|.+
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888888888888876542 2 12567777788888888888888888888888775
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.82 E-value=9.5e-07 Score=81.89 Aligned_cols=165 Identities=12% Similarity=-0.028 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND----VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK---- 448 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---- 448 (566)
..+...+..+...|++++|.+.+++..+... ..++. ..+..+...+...|++++|...++.......-..+
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3456677888999999999999998887541 11111 22334555677889999999999988753111112
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE----KVD-----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESS------ 513 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------ 513 (566)
..+++.+...|...|++++|+..+++... .|+ ..++..+...|...|++++|...++++++..+.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34788999999999999999999988752 122 257888999999999999999999999986422
Q ss_pred CchhHHHHHHHHHhCCChHHH-HHHHHHHH
Q 042098 514 NSGNYVISSKIFANLKMWDDS-AKMRALMR 542 (566)
Q Consensus 514 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 542 (566)
-..+|..++.+|...|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 156788999999999999999 77787765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.4e-08 Score=89.70 Aligned_cols=163 Identities=9% Similarity=-0.022 Sum_probs=126.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CC--CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCC--CC--hhH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAA-RP--NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI--PK--SEH 451 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--p~--~~~ 451 (566)
|+.....|...|++++|...|.+..+..... .+ -..+|..+...|...|++++|...+++....+.-. +. ..+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555678889999999999998876532000 11 14578888889999999999999999877542111 11 357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC----C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hh
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPEK----V----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS------GN 517 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~ 517 (566)
+..+...|.. |++++|+..|++...- . ...++..+...+...|++++|+..++++++..|.+. ..
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 7888899988 9999999999887541 1 146788889999999999999999999999865443 36
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 518 YVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
+..++.++...|++++|...+++..
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7778888999999999999999988
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-07 Score=81.75 Aligned_cols=181 Identities=9% Similarity=0.008 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
.+-.....+...|++++|+..|++..+. .|+........ ..... ..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~~~~~--~~----------------------------- 51 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-NVDKN--SE----------------------------- 51 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-HSCTT--SH-----------------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-hhcch--hh-----------------------------
Confidence 3444555677889999999999988774 44432211110 00000 00
Q ss_pred HccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC
Q 042098 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 447 (566)
......+.+..+|.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...|++..+. .|
T Consensus 52 ------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P 119 (208)
T 3urz_A 52 ------ISSKLATELALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EA 119 (208)
T ss_dssp ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT
T ss_pred ------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC
Confidence 012334558889999999999999999999864 346788899999999999999999999999875 56
Q ss_pred C-hhHHHHHHHHHHhcCC--HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 448 K-SEHYSCMVDLYARAGH--LSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 448 ~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
+ ...+..+..+|...|+ .+.+...++..... |....+.....++...|++++|+..|++++++.|++
T Consensus 120 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 5 6788888888876654 45667777776643 222334445666777899999999999999999974
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.80 E-value=9.2e-08 Score=75.89 Aligned_cols=103 Identities=9% Similarity=0.109 Sum_probs=90.4
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 444 GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 444 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
-+.|+ ...+......|.+.|++++|++.|++... +.+...|..+..++.+.|++++|+..++++++++|.++..|..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35566 45778888999999999999999998764 3567888889999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 521 SSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
++.+|...|++++|.+.+++..+..+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999987654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-08 Score=82.90 Aligned_cols=95 Identities=9% Similarity=0.002 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (566)
..+..+...+.+.|++++|+..|++... ..+...|..+..++...|++++|...++++++.+|+++..+..++.+|..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3445555556666666666666655432 23455555566666666666666666666666666666666666666666
Q ss_pred CCChHHHHHHHHHHHhC
Q 042098 528 LKMWDDSAKMRALMREK 544 (566)
Q Consensus 528 ~g~~~~A~~~~~~~~~~ 544 (566)
.|++++|.+.++++.+.
T Consensus 102 ~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 102 XGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666666543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-07 Score=83.26 Aligned_cols=162 Identities=9% Similarity=-0.033 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-HHHHHH----------------HHHHHhhhCcHHHHHHHHHHhH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-DVTFIG----------------VLSACVHAGLVDEGRRLFDLMS 440 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~----------------ll~~~~~~g~~~~A~~~~~~~~ 440 (566)
.+-.....+...|++++|+..|++..+.. |+ ...+.. +..++...|++++|...|++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN----IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455667789999999999999998854 54 445666 7888999999999999999998
Q ss_pred HhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCCc
Q 042098 441 SSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKN--TDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 441 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~~~ 515 (566)
+. .|+ ...+..+..+|...|++++|+..|++... +.+...|..+...+...|+ .+.+...++++....|. .
T Consensus 82 ~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 157 (208)
T 3urz_A 82 QK---APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-Q 157 (208)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-H
T ss_pred HH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-h
Confidence 75 565 77899999999999999999999999865 2457788888887766543 44556666665532222 2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 516 GNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
..+..++.++...|++++|+..++++.+..+.
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 34566788888999999999999999887654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-07 Score=87.77 Aligned_cols=136 Identities=6% Similarity=-0.051 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHH
Q 042098 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGAL 487 (566)
Q Consensus 410 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l 487 (566)
+.+...+..+...+...|++++|...+++..+. .|+ ...+..+..+|.+.|++++|+..++++... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 344566777788889999999999999999876 565 678889999999999999999999999764 665544333
Q ss_pred H-HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 488 L-GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 488 ~-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
. ..+...++.+.|...++++++.+|+++..+..++.+|...|++++|...++++.+.....
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 3 346677888889999999999999999999999999999999999999999998875543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.76 E-value=5.9e-07 Score=79.59 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=65.7
Q ss_pred hCcHHHHHHHHHHhHHhcCCCCCh-hHH-----------------HHHHHHHHhcCCHHHHHHHHHhCCCC-CCH----H
Q 042098 426 AGLVDEGRRLFDLMSSSFGLIPKS-EHY-----------------SCMVDLYARAGHLSEAWDFVERMPEK-VDE----I 482 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~ 482 (566)
.|+.++|...|+++.+. .|+. ... ..+...|.+.|++++|+..|+++... |+. .
T Consensus 109 ~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 185 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD 185 (225)
T ss_dssp CHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred cHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence 45677777777766643 3442 111 34567788999999999999988753 442 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
.+..+..++.+.|+.++|.+.++.+....|++..
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 6777889999999999999999999988887643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-05 Score=78.51 Aligned_cols=367 Identities=8% Similarity=-0.053 Sum_probs=206.1
Q ss_pred C-ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHH
Q 042098 98 Q-KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK-LDSARK 175 (566)
Q Consensus 98 ~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~-~~~A~~ 175 (566)
| +...|..+|+.+... -|. ++.+.+..+|+..+.. .|+...|...+....+.++ .+....
T Consensus 8 ~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 8 GVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHH
T ss_pred CcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 5 477888888887764 233 8999999999998874 5788899988888777663 344555
Q ss_pred HHhccC------CCChhHHHHHHHHHH----hcCChhHHHHHHHHhHHCCCCCCH-HHHHHHHHHhcCCCCch-------
Q 042098 176 VFDEIR------ERDLVSWNSMISGYS----KMGYAKEAVELFGRMREEEFLPDE-ITLVSVLGSCGDLGDLV------- 237 (566)
Q Consensus 176 ~~~~~~------~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~------- 237 (566)
+|+... ..+...|...+..+. .+++.+.+..+|++..... ..+. ..|..... +....+..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFEN-FELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHH-HHHHHCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHH-HHHHhccccHHHHHH
Confidence 555433 135677777776544 2456788999999988632 1122 22222211 11111111
Q ss_pred -------hHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC--C-----HHHHHHHHhcCCC---CChhHHHHHHHHHHHcC
Q 042098 238 -------LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG--A-----LVPARRVFDAMVN---KDVVTWNAMITAYAQNG 300 (566)
Q Consensus 238 -------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 300 (566)
.|..++..+...-...+...|...+..-...+ - .+.+..+|+++.. .+...|-..+.-+.+.|
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~ 227 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG 227 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 22333332222111112224444444322211 0 2334556665532 24556666666677777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHH
Q 042098 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380 (566)
Q Consensus 301 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 380 (566)
+.++|..++++.... |....+... ++.....+. +++.+.+.-.... .+.+.. .........|.
T Consensus 228 ~~~~ar~i~erAi~~---P~~~~l~~~---y~~~~e~~~---~~~~l~~~~~~~~-----~~~~~~---~~~~~~~~lw~ 290 (493)
T 2uy1_A 228 QKEKAKKVVERGIEM---SDGMFLSLY---YGLVMDEEA---VYGDLKRKYSMGE-----AESAEK---VFSKELDLLRI 290 (493)
T ss_dssp CHHHHHHHHHHHHHH---CCSSHHHHH---HHHHTTCTH---HHHHHHHHTC------------------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC---CCcHHHHHH---HHhhcchhH---HHHHHHHHHHhhc-----cchhhh---hcccccHHHHH
Confidence 777777777777765 443322221 111111111 1222222110000 000000 00001134577
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH-AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 459 (566)
..+..+.+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|+...+.++- ++..+...++..
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~~---~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e 364 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GNE---GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TTS---CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hCC---CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHH
Confidence 7777777788899999999988 321 2344444322222222 34699999999998886322 244556677777
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
.+.|+.+.|..+|+++.. ....|...+.--...|+.+.+..+++++.+
T Consensus 365 ~~~~~~~~aR~l~er~~k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLEK--TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSCC--BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999853 577888888877788999999998888875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-07 Score=77.71 Aligned_cols=126 Identities=10% Similarity=0.005 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGAC 491 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 491 (566)
.+..+...+...|++++|...++...+. .| +...+..+...+...|++++|++.+++... ..+...|..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444555556666666666666666543 23 355566666666677777777776666543 23466777888888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH--HHhCCChHHHHHHHHHHHh
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI--FANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 543 (566)
...|++++|...++++++..|.+...+..+..+ +...|++++|.+.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999988877554444 8888999999999887653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-07 Score=79.06 Aligned_cols=130 Identities=8% Similarity=0.070 Sum_probs=103.8
Q ss_pred HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHH-HH
Q 042098 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGA-CQ 492 (566)
Q Consensus 416 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~-~~ 492 (566)
+......+...|++++|...+++..+. .|+ ...+..+..++...|++++|+..+++.... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 445566788899999999999988765 555 678899999999999999999999998764 544333222212 12
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
..++...|...++++++.+|+++..+..++.++...|++++|...++++.+.....
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 22333457999999999999999999999999999999999999999999876543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=8.1e-08 Score=81.59 Aligned_cols=126 Identities=10% Similarity=0.091 Sum_probs=75.4
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHH-HHhcC
Q 042098 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDL-YARAG 463 (566)
Q Consensus 386 ~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g 463 (566)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+. .| +...+..+..+ +...|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQAS 93 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTT
T ss_pred hhhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcC
Confidence 445566777777777776653 345566666666777777777777777776654 23 34555556666 55666
Q ss_pred CH--HHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 042098 464 HL--SEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517 (566)
Q Consensus 464 ~~--~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (566)
++ ++|+..+++.... .+...+..+...+...|++++|...++++++..|+++..
T Consensus 94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 66 6666666665432 234555666666666677777777777766666665443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-07 Score=87.95 Aligned_cols=93 Identities=13% Similarity=0.006 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
...|..+..+|.+.|++++|+..+++... ..+...|..+..++...|++++|...|+++++++|.+..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 36777888888888888888888887754 2467788888999999999999999999999999999999999999999
Q ss_pred hCCChHHH-HHHHHHH
Q 042098 527 NLKMWDDS-AKMRALM 541 (566)
Q Consensus 527 ~~g~~~~A-~~~~~~~ 541 (566)
..|++++| .++++.|
T Consensus 276 ~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 276 RIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 99999999 4456655
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-06 Score=75.61 Aligned_cols=126 Identities=12% Similarity=-0.037 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcC----ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh----hCcHHHHHHHHHHhHHhcCCCCC-
Q 042098 378 SWNAMISALAFNG----RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH----AGLVDEGRRLFDLMSSSFGLIPK- 448 (566)
Q Consensus 378 ~~~~li~~~~~~~----~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~- 448 (566)
++..|...|.. + ++++|+.+|++..+.| +...+..|...|.. .+++++|...|++..+. .|.
T Consensus 52 a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~ 122 (212)
T 3rjv_A 52 ALALLAQLKIR-NPQQADYPQARQLAEKAVEAG-----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESD 122 (212)
T ss_dssp HHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSH
T ss_pred HHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCc
Confidence 34444444444 4 6777777777776654 45556666666665 66777777777776643 332
Q ss_pred --hhHHHHHHHHHHh----cCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhCC
Q 042098 449 --SEHYSCMVDLYAR----AGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQ-K-----NTDVSQRVMQLLLEIES 512 (566)
Q Consensus 449 --~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p 512 (566)
+..+..|...|.. .+++++|++.|++.... ++...+..|...|... | +.++|...++++.+.+.
T Consensus 123 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 123 AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 5666777777777 67788888888776554 4555666666666543 2 78888888888887654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=76.62 Aligned_cols=93 Identities=10% Similarity=-0.058 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
.+..+...+.+.|++++|+..|++... ..+...|..+..++...|++++|...++++++.+|.++..+..++.+|...
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 333444445555555555555554432 123444555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHh
Q 042098 529 KMWDDSAKMRALMRE 543 (566)
Q Consensus 529 g~~~~A~~~~~~~~~ 543 (566)
|++++|.+.++++.+
T Consensus 100 g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 100 GDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.1e-07 Score=71.67 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 042098 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGA 490 (566)
Q Consensus 413 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 490 (566)
...+..+...+...|++++|...++++.+. . +.+...+..+...+.+.|++++|+..++++.. ..+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-C-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345555666666666666666666666654 1 12345566666666777777777776666543 2356677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888899999999999999888988888888887776543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.9e-07 Score=73.22 Aligned_cols=116 Identities=10% Similarity=-0.004 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 042098 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLG 489 (566)
Q Consensus 413 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 489 (566)
...+..+...+...|++++|...+++.... .| +...+..+...+...|++++|++.+++... ..+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 445556666666777777777777776654 23 355666777777777777777777776543 234667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
.+...|++++|...++++.+..|.++..+..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999888876
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-06 Score=76.50 Aligned_cols=80 Identities=11% Similarity=-0.014 Sum_probs=38.7
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHH
Q 042098 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438 (566)
Q Consensus 359 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 438 (566)
|++++|...|++...|+...|..+...|...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+.
T Consensus 20 ~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 96 (213)
T 1hh8_A 20 KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96 (213)
T ss_dssp TCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 445555555554444444445555555555555555555555544432 22334444444445555555555555554
Q ss_pred hHH
Q 042098 439 MSS 441 (566)
Q Consensus 439 ~~~ 441 (566)
..+
T Consensus 97 al~ 99 (213)
T 1hh8_A 97 ALI 99 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-07 Score=72.29 Aligned_cols=100 Identities=11% Similarity=0.048 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS--NSGNYVISSKI 524 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 524 (566)
...+..+...+...|++++|...+++... ..+...+..+...+...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 55677788888889999999988887654 245677888889999999999999999999999999 99999999999
Q ss_pred HHhC-CChHHHHHHHHHHHhCCCcc
Q 042098 525 FANL-KMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 525 ~~~~-g~~~~A~~~~~~~~~~g~~~ 548 (566)
+... |++++|.+.+++..+.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999 99999999999998876543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.2e-07 Score=82.39 Aligned_cols=182 Identities=8% Similarity=-0.049 Sum_probs=131.0
Q ss_pred CCHHHHHHHHccCC---CCChhHHHHH-------HHHHHHcCChHHHHHHHHHHHhCCCCCCCC----------------
Q 042098 359 GSIDDALKVFEDMP---VTNEVSWNAM-------ISALAFNGRAHEALLLFERMSKEGGAARPN---------------- 412 (566)
Q Consensus 359 ~~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~~~g~~~~p~---------------- 412 (566)
++...|.+.|.+.. +.....|..+ ..++...++..+++..+++-.. +.|+
T Consensus 20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~----l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ----ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT----CCGGGGCCEEECCTTTCCCE
T ss_pred CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc----CChhhhhhhhccCCcccccc
Confidence 34444444444433 3356678877 4666666666677666666544 2222
Q ss_pred ------HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 042098 413 ------DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE----I 482 (566)
Q Consensus 413 ------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 482 (566)
......+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 122334556788899999999999888743 465436667777889999999999999877655533 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-CchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEIE--SS-NSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
.+..+..++...|++++|+..|+++..-. |. .+.....++.++.+.|+.++|...|+++......
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 67778899999999999999999998532 43 4457888999999999999999999999876554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.63 E-value=5.6e-06 Score=82.36 Aligned_cols=103 Identities=10% Similarity=-0.020 Sum_probs=68.6
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHHHHhcCC-hhHHHH
Q 042098 131 NLL-ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLVSWNSMISGYSKMGY-AKEAVE 206 (566)
Q Consensus 131 ~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~a~~ 206 (566)
+.| +++.|..+|+.+...- |. |+++.+..+|+.... |++..|...+.-..+.++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 4778888888776641 22 889999999998876 788888888877777663 456677
Q ss_pred HHHHhHHC-CCCC-CHHHHHHHHHHhcC----CCCchhHHHHHHHHHHh
Q 042098 207 LFGRMREE-EFLP-DEITLVSVLGSCGD----LGDLVLGKWVEGFVVKN 249 (566)
Q Consensus 207 ~~~~m~~~-~~~p-~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~ 249 (566)
+|+..... |..| +...|...+..+.. .++.+.+..+|+..+..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 88776543 4333 55667766766543 35677788888888874
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=3e-07 Score=73.47 Aligned_cols=115 Identities=13% Similarity=0.033 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 042098 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLG 489 (566)
Q Consensus 413 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 489 (566)
...+..+...+...|++++|...+++..+. .| +...+..+...|...|++++|++.+++... ..+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 344455555555555555555555555432 22 244555555555555566666555555432 134566677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCC
Q 042098 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (566)
++...|++++|.+.++++++..|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 78888888888888888888888888888888887776653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.4e-06 Score=74.62 Aligned_cols=149 Identities=13% Similarity=0.141 Sum_probs=98.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHH--HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC---
Q 042098 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD--EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH--- 464 (566)
Q Consensus 390 ~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~--~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--- 464 (566)
+++++++.+++++.+.. +-+...|+.-...+...|.++ ++++.++.+.+. . .-|...|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~---pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD---PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp CCTHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred CCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccch
Confidence 66777888888777754 345566665555556666666 777777777765 2 2234555555555556565
Q ss_pred ---HHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhC---CCCchhHHHHHHHHHhCCChHHHH
Q 042098 465 ---LSEAWDFVERMPE--KVDEIVLGALLGACQKQKNT-DVSQRVMQLLLEIE---SSNSGNYVISSKIFANLKMWDDSA 535 (566)
Q Consensus 465 ---~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~ 535 (566)
++++++.++++.. ..+...|+.+...+.+.|+. +.+..+.+++.+.+ |.++..+..++.+|.+.|+.++|.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 7777777776653 24666777777777666663 33455666665554 777778888888888888888888
Q ss_pred HHHHHHHh
Q 042098 536 KMRALMRE 543 (566)
Q Consensus 536 ~~~~~~~~ 543 (566)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.6e-07 Score=77.28 Aligned_cols=154 Identities=9% Similarity=-0.068 Sum_probs=95.5
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc---CCCCC-hhHHHHHHHHHHhc
Q 042098 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF---GLIPK-SEHYSCMVDLYARA 462 (566)
Q Consensus 387 ~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~ 462 (566)
...|++++|.+.++.+... .......+..+...+...|++++|...+++..... +..|. ..++..+...|...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH---PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHTS---TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 3456777777744444321 12345566666667777777777777777665521 11221 34566677777777
Q ss_pred CCHHHHHHHHHhCCCC----C-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCC----chhHHHHHHHHHh
Q 042098 463 GHLSEAWDFVERMPEK----V-D----EIVLGALLGACQKQKNTDVSQRVMQLLLEIE--SSN----SGNYVISSKIFAN 527 (566)
Q Consensus 463 g~~~~A~~~~~~~~~~----~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~ 527 (566)
|++++|.+.+++.... + + ...+..+...+...|++++|...++++++.. ..+ ...+..++.++..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 7777777777664331 2 2 2345666777778888888888888887653 222 2235677888888
Q ss_pred CCChHHHHHHHHHHHh
Q 042098 528 LKMWDDSAKMRALMRE 543 (566)
Q Consensus 528 ~g~~~~A~~~~~~~~~ 543 (566)
.|++++|.+.+++..+
T Consensus 160 ~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 8888888888777653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.6e-07 Score=85.01 Aligned_cols=158 Identities=11% Similarity=-0.033 Sum_probs=108.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh-hHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS-EHYS 453 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~ 453 (566)
+...|..+..+|.+.|++++|...+++..+.. +-+...+..+..++...|++++|...|+...+. .|+. ..+.
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~ 110 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL---AKEQRLNFG 110 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCC
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhhHH
Confidence 45667788888889999999999999988754 345677888888899999999999999888764 3321 1111
Q ss_pred HHHH---HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC-C
Q 042098 454 CMVD---LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL-K 529 (566)
Q Consensus 454 ~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g 529 (566)
..+. ...+...+.. ........+......+ ..+. .|+.++|.+.++++.+.+|++......+...+.+. +
T Consensus 111 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 184 (281)
T 2c2l_A 111 DDIPSALRIAKKKRWNS----IEERRIHQESELHSYL-TRLI-AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDK 184 (281)
T ss_dssp SHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHH-HHHH-HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHH-HHHH-HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHH
Confidence 1121 2222222222 2222222333333333 3332 68899999999999999998888777887777776 7
Q ss_pred ChHHHHHHHHHHHhC
Q 042098 530 MWDDSAKMRALMREK 544 (566)
Q Consensus 530 ~~~~A~~~~~~~~~~ 544 (566)
.+++|.++|+++.+.
T Consensus 185 ~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 185 YMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHhhhcc
Confidence 899999999888753
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.7e-07 Score=72.38 Aligned_cols=92 Identities=11% Similarity=-0.019 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
+..+...+.+.|++++|+..|++... ..+...|..+..++.+.|++++|+..++++++.+|.++..+..++.++...|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 34444444555555555555544432 1234455555555555555555555555555555555555555555666666
Q ss_pred ChHHHHHHHHHHHh
Q 042098 530 MWDDSAKMRALMRE 543 (566)
Q Consensus 530 ~~~~A~~~~~~~~~ 543 (566)
++++|.+.++++.+
T Consensus 87 ~~~~A~~~~~~al~ 100 (126)
T 3upv_A 87 EYASALETLDAART 100 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666555555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-07 Score=73.43 Aligned_cols=96 Identities=8% Similarity=-0.125 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
.+..+...+.+.|++++|+..|++.... .+...|..+..++...|++++|+..++++++.+|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999887652 46778888889999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 042098 529 KMWDDSAKMRALMREKGV 546 (566)
Q Consensus 529 g~~~~A~~~~~~~~~~g~ 546 (566)
|++++|...++++.+...
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=4.4e-07 Score=74.24 Aligned_cols=100 Identities=10% Similarity=0.041 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 042098 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLG 489 (566)
Q Consensus 413 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 489 (566)
...+..+...+.+.|++++|...|+..... .|+ ...|..+..+|...|++++|+..|++... +.+...|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 345666667778888888888888888765 454 66777888888888888888888887754 235677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 490 ACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
++...|++++|...|+++++..|+++
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888999999999999988888754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.3e-07 Score=74.31 Aligned_cols=106 Identities=7% Similarity=-0.038 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHH
Q 042098 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALL 488 (566)
Q Consensus 412 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~ 488 (566)
+...+..+...+...|++++|...|+..... .| +...+..+..+|...|++++|++.|++... +.+...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 3455666777788888899998888888765 44 466778888888889999999988888754 24567778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
.++...|++++|...|+++++..|+++.....
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 89999999999999999999998887765433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.5e-06 Score=77.28 Aligned_cols=173 Identities=6% Similarity=-0.085 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
.+...+..+...|++++|.+.+.+..+.... ..... ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~-~~---------------------------------------- 114 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQ-QF---------------------------------------- 114 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHH-HH----------------------------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHH-HH----------------------------------------
Confidence 3445566778888999998888887765321 11110 00
Q ss_pred HccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CCCC--HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcC
Q 042098 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA-ARPN--DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 444 (566)
...+..+...+...|++++|+..+++..+.... ..+. ..+++.+...|...|++++|...+++..+...
T Consensus 115 --------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~ 186 (293)
T 2qfc_A 115 --------LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp --------HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 111233445566677777777777776643200 1111 34667777777777888888777777763211
Q ss_pred CCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhh
Q 042098 445 LIPK-----SEHYSCMVDLYARAGHLSEAWDFVERMPEK--------VDEIVLGALLGACQKQKNTDVS-QRVMQLLLEI 510 (566)
Q Consensus 445 ~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 510 (566)
..|+ ..++..+...|.+.|++++|++.+++...- ....+|..+..++.+.|+.++| ...+++++..
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 1222 146677777777888888887777765431 1145667777788888888888 7777777654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=8.1e-08 Score=83.32 Aligned_cols=131 Identities=11% Similarity=-0.033 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC--------------ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP--------------KSEHYSCMVDLYARAGHLSEAWDFVERMPE--K 478 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 478 (566)
.+..+...+...|++++|...|++..+...-.| ....+..+..+|.+.|++++|+..+++... .
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344444555556666666666665554211111 025777788888899999999998887754 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHH-HHHHHHHhCC
Q 042098 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA-KMRALMREKG 545 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~g 545 (566)
.+...+..+..++...|++++|...|+++++..|.+..++..+..++...++.+++. ..+..+...|
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 467788888899999999999999999999999999999999999999999888887 5566665443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.53 E-value=7.3e-07 Score=71.77 Aligned_cols=92 Identities=8% Similarity=-0.033 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
.+..+...+...|++++|+..|++... ..+...|..+..++...|++++|...++++++.+|.++..+..++.+|...
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 334444444444444444444443322 122344444444455555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHH
Q 042098 529 KMWDDSAKMRALMR 542 (566)
Q Consensus 529 g~~~~A~~~~~~~~ 542 (566)
|++++|.+.++++.
T Consensus 91 ~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 91 ESYDEAIANLQRAY 104 (137)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555555444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.53 E-value=4e-07 Score=76.10 Aligned_cols=109 Identities=13% Similarity=0.027 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 042098 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGAL 487 (566)
Q Consensus 411 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 487 (566)
.+...+..+...+...|++++|+..|++..+. .| +...|..+..+|.+.|++++|+..|++... ..+...|..+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34567888888899999999999999999875 45 477888999999999999999999998765 2457888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (566)
..++...|++++|...|+++++.+|++...+...+
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999999988665544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.9e-07 Score=70.98 Aligned_cols=98 Identities=7% Similarity=0.042 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
...+..+...+.+.|++++|++.+++.... .+...+..+...+...|++++|...++++++..|.++..+..++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 567888999999999999999999987653 467888889999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhCCC
Q 042098 527 NLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~g~ 546 (566)
..|++++|.+.+++..+...
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCG
T ss_pred HHhhHHHHHHHHHHHHHhCC
Confidence 99999999999999887643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=3.6e-05 Score=71.13 Aligned_cols=169 Identities=6% Similarity=-0.111 Sum_probs=117.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHcc
Q 042098 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFED 370 (566)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 370 (566)
..+..+...|++++|..++++..+.. +........
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~------------------------------------------- 114 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQF------------------------------------------- 114 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHH-------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccc--cCChHHHHH-------------------------------------------
Confidence 34667888999999999999887642 211111110
Q ss_pred CCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC----HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc---
Q 042098 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN----DVTFIGVLSACVHAGLVDEGRRLFDLMSSSF--- 443 (566)
Q Consensus 371 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~--- 443 (566)
...+..+...+...|++++|+..+++...... -.++ ..+++.+...|...|++++|...++++.+..
T Consensus 115 -----~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~-~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 188 (293)
T 3u3w_A 115 -----LQWQYYVAAYVLKKVDYEYCILELKKLLNQQL-TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188 (293)
T ss_dssp -----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC-CCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred -----HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 11234455666677788999998888877421 1122 3367888888888999999999988887521
Q ss_pred -CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhh
Q 042098 444 -GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE-------KV-DEIVLGALLGACQKQK-NTDVSQRVMQLLLEI 510 (566)
Q Consensus 444 -~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 510 (566)
+..+. ..++..+...|.+.|++++|++.+++... .+ -..+|..+..++.+.| ++++|.+.+++++..
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 11111 34778888999999999999998887653 11 2567888889999999 569999999999875
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.50 E-value=0.0002 Score=65.85 Aligned_cols=226 Identities=9% Similarity=-0.001 Sum_probs=155.4
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH----hcc---CCh
Q 042098 270 ALVPARRVFDAMVN--K-DVVTWNAMITAYAQNG--LSNEAIMLFNRMKYAGVNPDKITLIGVLSAC----ASI---GAL 337 (566)
Q Consensus 270 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~---g~~ 337 (566)
..++|+++++.+.. | +...|+.--..+...| +++++++.++.+.....+ +...++.--..+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 33566666666533 2 3345666666666666 788888888877764321 222222221111 222 455
Q ss_pred hHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChH--HHHHHHHHHHhCCCCCCCCHHH
Q 042098 338 DLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH--EALLLFERMSKEGGAARPNDVT 415 (566)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~g~~~~p~~~t 415 (566)
+++..+++.+.+.. +.|..+|+--..++.+.|+++ ++++.++++.+.. +-|...
T Consensus 127 ~~EL~~~~~~l~~~---------------------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sA 182 (306)
T 3dra_A 127 YREFDILEAMLSSD---------------------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSA 182 (306)
T ss_dssp HHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHH
T ss_pred HHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHH
Confidence 55555555555433 247778888888888889888 9999999999875 346667
Q ss_pred HHHHHHHHhhhCc------HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHH-HHHHHHhCCC-----CCCHH
Q 042098 416 FIGVLSACVHAGL------VDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSE-AWDFVERMPE-----KVDEI 482 (566)
Q Consensus 416 ~~~ll~~~~~~g~------~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~ 482 (566)
|+.-...+...+. ++++++.++.+... .| |...|+.+...+.+.|+..+ +..+.+++.. ..+..
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 259 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSF 259 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHH
Confidence 7665555566665 88999999988865 44 47788888888888888544 5557776553 24677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCchhHHHHHH
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLE-IESSNSGNYVISSK 523 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~ 523 (566)
.+..+..++.+.|+.++|.++++.+.+ .+|.....|...+.
T Consensus 260 al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 260 ALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 888889999999999999999999997 78988777776544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=9.6e-07 Score=68.64 Aligned_cols=108 Identities=13% Similarity=0.040 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGA 490 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~ 490 (566)
..+..+...+...|++++|...++..... .| +...+..+...+...|++++|...+++.... .+...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34445555555666666666666655543 22 3444555555555555555555555554321 234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 042098 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524 (566)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (566)
+...|++++|...++++.+..|.++..+..++.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 5555555555555555555555555554444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.49 E-value=9.8e-07 Score=69.39 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
...+..+...+...|++++|.+.++++.. ..+...+..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 46788889999999999999999998764 2467788889999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhCCC
Q 042098 527 NLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~g~ 546 (566)
..|++++|.+.++++.+...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999987644
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-06 Score=74.66 Aligned_cols=122 Identities=7% Similarity=0.063 Sum_probs=93.7
Q ss_pred hhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHH-HHhcCCH--
Q 042098 424 VHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGA-CQKQKNT-- 497 (566)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~-~~~~~~~-- 497 (566)
...|++++|...++..... .| +...+..+...|...|++++|+..|++.... .+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 4567888888888887765 34 4677888888888899999998888887642 356667777777 6788887
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 498 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
++|...++++++.+|.++..+..++.+|...|++++|...++++.+.....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 889999999988888888888888889999999999999888888765543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-05 Score=69.33 Aligned_cols=159 Identities=14% Similarity=0.051 Sum_probs=93.1
Q ss_pred hcCCHHHHHH---HHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHH
Q 042098 267 KCGALVPARR---VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343 (566)
Q Consensus 267 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 343 (566)
..|++++|.+ .+..-+......+..+...+...|++++|...+++..+.-. ..++..
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~~----- 63 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQ---------------KSGDHT----- 63 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------TTCCHH-----
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH---------------HcCCcH-----
Confidence 4566666666 44433333445666666777777777777777766654100 000000
Q ss_pred HHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--CC--CHHHHHHH
Q 042098 344 DKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA--RP--NDVTFIGV 419 (566)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~--~p--~~~t~~~l 419 (566)
....++..+...+...|++++|...+++..+.-... .| ....+..+
T Consensus 64 ------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 113 (203)
T 3gw4_A 64 ------------------------------AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEV 113 (203)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 123457777888889999999999988876531001 11 13456677
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
...+...|++++|...+++......-..+ ..++..+...+...|++++|.+.+++.
T Consensus 114 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 114 ATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 77788889999998888877643111111 223455666666677777666666554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.3e-07 Score=71.12 Aligned_cols=92 Identities=5% Similarity=-0.045 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc-------hhHHHHH
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS-------GNYVISS 522 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~ 522 (566)
+..+...+.+.|++++|++.|++..+ +.+...|..+..++.+.|++++|++.+++++++.|.+. .+|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 33444444444555555554444332 12334444455555555555555555555555544332 2344445
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 042098 523 KIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.++...|++++|++.+++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555555555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.2e-06 Score=67.86 Aligned_cols=110 Identities=12% Similarity=-0.090 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGA 490 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 490 (566)
..+..+...+...|++++|...|++..+. .|+ ...|..+..+|.+.|++++|+..+++... ..+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44555666677777777777777777654 343 56677777777777777777777776654 2346677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHHHHH
Q 042098 491 CQKQKNTDVSQRVMQLLLEIE------SSNSGNYVISSKIFA 526 (566)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 526 (566)
+...|++++|...++++++.+ |.+..+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 888899999999999999888 777777777766543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.8e-06 Score=65.90 Aligned_cols=98 Identities=6% Similarity=0.038 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
...+..+...+...|++++|...+++... +.+...+..+...+...|++++|...++++++..|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34556666777777777777777776643 2356666667777777777777777777777777777777777777777
Q ss_pred hCCChHHHHHHHHHHHhCCC
Q 042098 527 NLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~g~ 546 (566)
..|++++|.+.+++..+.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 77777777777777766543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-06 Score=70.25 Aligned_cols=113 Identities=12% Similarity=-0.075 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHH
Q 042098 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVL 484 (566)
Q Consensus 411 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 484 (566)
.+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|++.+++.... .+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 3456666667777777777777777777764 3455 456666677777777777777777665431 345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
..+..++...|++++|...++++++..|.+..++..+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 666677777777777777777777777777666666655543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-06 Score=70.09 Aligned_cols=105 Identities=7% Similarity=-0.027 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGA 490 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 490 (566)
..+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|+..|++... +.+...+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 33444555666677777777777776654 34 355666677777777777777777776543 2345566777788
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+...|++++|...++++++..|.++......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 8888888888888888888888777665543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.4e-06 Score=68.69 Aligned_cols=96 Identities=9% Similarity=-0.005 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
...+..+...+...|++++|++.|++.... |+ ...|..+..++...|++++|...++++++..|.++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 344455555555555555555555554432 33 3444555555555555555555555555555555555555555
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 042098 524 IFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 524 ~~~~~g~~~~A~~~~~~~~~~ 544 (566)
+|...|++++|.+.+++..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.42 E-value=9.3e-07 Score=70.27 Aligned_cols=100 Identities=13% Similarity=0.051 Sum_probs=56.9
Q ss_pred HHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-h---hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHH
Q 042098 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPK-S---EHYSCMVDLYARAGHLSEAWDFVERMPEK-VD----EIVLGALLG 489 (566)
Q Consensus 419 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~ 489 (566)
+...+...|++++|...|+.+.+. .|+ . ..+..+..++.+.|++++|+..|++.... |+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344555666666666666666654 233 2 35555566666666666666666655431 22 344555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
++...|++++|...++++++..|+++......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 66666666666666666666666655444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.8e-06 Score=70.07 Aligned_cols=96 Identities=15% Similarity=0.042 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSC 454 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 454 (566)
...+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|+..+++..+. .|+ ...|..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 84 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 4456666677777777777777777777653 235566666667777777777777777777654 343 556667
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC
Q 042098 455 MVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
+..+|...|++++|++.|++...
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 77777777777777777766543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-06 Score=68.36 Aligned_cols=98 Identities=12% Similarity=0.045 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
...+..+...+...|++++|...+++... ..+...+..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 56778888999999999999999998764 2467888889999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhCCC
Q 042098 527 NLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~g~ 546 (566)
..|++++|.+.++++.+...
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHST
T ss_pred HhCCHHHHHHHHHHHHhcCc
Confidence 99999999999999987644
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-05 Score=67.20 Aligned_cols=129 Identities=9% Similarity=-0.098 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSC 454 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 454 (566)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+. .| +...+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~ 86 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 4567888889999999999999999998864 346788888999999999999999999999875 34 4678889
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGA--LLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
+..++...|++++|.+.+++.... | +...+.. .+..+...|++++|...+++....
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999987642 3 4444433 334477889999999999887654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=4.9e-06 Score=66.78 Aligned_cols=111 Identities=10% Similarity=-0.059 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 042098 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGAL 487 (566)
Q Consensus 411 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 487 (566)
.+...+..+...+...|++++|...|+..... .|+ ...+..+..++...|++++|+..+++... +.+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34566666666777777777777777776654 333 55666777777777777777777776543 2346677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC-----CchhHHHHHHH
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESS-----NSGNYVISSKI 524 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~ 524 (566)
..++...|++++|...++++++..|+ +..+...+..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888776 45555555444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.32 E-value=3.5e-06 Score=68.20 Aligned_cols=63 Identities=10% Similarity=-0.010 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCchhH----HHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEI-------ESSNSGNY----VISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
..|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37777888888888888888888888888 89888888 88899999999999999998888653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-05 Score=63.77 Aligned_cols=93 Identities=9% Similarity=-0.040 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHH
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPE-KVDE----IVLGALLGACQKQKNTDVSQRVMQLLLEIESSN---SGNYVISSKI 524 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 524 (566)
..+...+...|++++|...|+++.. .|+. ..+..+..++...|++++|...++++++..|++ +..+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3455566677777777777776554 2332 355666677777777777777777777777776 5567777777
Q ss_pred HHhCCChHHHHHHHHHHHhCC
Q 042098 525 FANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 525 ~~~~g~~~~A~~~~~~~~~~g 545 (566)
+...|++++|.+.++++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 777777777777777776543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.1e-06 Score=69.29 Aligned_cols=129 Identities=10% Similarity=0.003 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C----CHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPEK----V----DEI 482 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~ 482 (566)
++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++.... + ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444455555555555555554432110111 134555666666666666666666654321 1 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEIES------SNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.+..+...+...|++++|.+.++++++..+ .....+..++.++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566677778888888888888888876532 1245677888999999999999999888765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.28 E-value=7.8e-06 Score=73.42 Aligned_cols=139 Identities=10% Similarity=-0.080 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC--hhHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK--SEHYSCM 455 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l 455 (566)
.+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|. ...+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~----p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~L 177 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG----SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAH 177 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT----CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHH
Confidence 45566788899999999999999988754 65545555566788999999999999855432 1 121 2467788
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPEKV-----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
..++.+.|++++|+..|++....| ....+.....++.+.|+.++|...|+++...+|. ..+...|.+
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 999999999999999999986443 2345667778899999999999999999999998 777666643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.27 E-value=6.2e-06 Score=81.52 Aligned_cols=94 Identities=13% Similarity=0.068 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
...|..+..+|.+.|++++|+..+++... ..+...|..+..++...|++++|...|+++++++|.+..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35777788888888888888888887754 2467788888899999999999999999999999999999999999999
Q ss_pred hCCChHHHHH-HHHHHH
Q 042098 527 NLKMWDDSAK-MRALMR 542 (566)
Q Consensus 527 ~~g~~~~A~~-~~~~~~ 542 (566)
..|+++++.+ .++.|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999998875 344443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-06 Score=66.97 Aligned_cols=95 Identities=6% Similarity=0.067 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHHHH
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN-------SGNYVIS 521 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l 521 (566)
.+..+...+...|++++|...+++... ..+...+..+...+...|++++|...++++++..|.+ ..++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 444555555666666666666655432 1345556666666667777777777777777766554 5667777
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCC
Q 042098 522 SKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
+.++...|++++|.+.++++.+..
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC
Confidence 777777777777777777766543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.1e-06 Score=69.71 Aligned_cols=103 Identities=16% Similarity=0.053 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCC---------------CCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL---------------IPK-SEHYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 413 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
...+......+.+.|++++|+..|+........ .|. ...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566666777778888888887777653100 111 2345555555555555555555555543
Q ss_pred C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 477 E--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 477 ~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
. ..+...|..+..++...|++++|...|+++++++|.++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 2 12344555555555555555555555555555555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.4e-06 Score=68.04 Aligned_cols=90 Identities=11% Similarity=0.089 Sum_probs=40.9
Q ss_pred hCcHHHHHHHHHHhHHhcCC-CCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 042098 426 AGLVDEGRRLFDLMSSSFGL-IPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQ 501 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 501 (566)
.|++++|+..|++..+. +. .|+ ...+..+..+|...|++++|++.|++.... .+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555432 10 122 334445555555555555555555544321 23344444445555555555555
Q ss_pred HHHHHHHhhCCCCch
Q 042098 502 RVMQLLLEIESSNSG 516 (566)
Q Consensus 502 ~~~~~~~~~~p~~~~ 516 (566)
..++++++..|.++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-05 Score=63.83 Aligned_cols=106 Identities=9% Similarity=0.020 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCM 455 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 455 (566)
.++..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|+..++...+. .|+ ...+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~ 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH
Confidence 344555555555555555555555555532 223444555555555555555555555554432 111 0111111
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 456 VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
..+|..+..++...|++++|++.|+++++..|+
T Consensus 83 -------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 -------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred -------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 124555666777778888888888887776654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.23 E-value=6.8e-06 Score=65.09 Aligned_cols=107 Identities=8% Similarity=0.020 Sum_probs=57.6
Q ss_pred HHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CC----HHHHHHH
Q 042098 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-----VD----EIVLGAL 487 (566)
Q Consensus 417 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~~l 487 (566)
..+...+...|++++|...++..... . +.+...+..+...|...|++++|...+++.... ++ ...+..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL-D-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 33344444444444444444444432 1 112334444444444444555444444443321 11 4556667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
..++...|++++|.+.++++++..| ++.....+..+..
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 7778888888888888888888777 4666666655544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.22 E-value=9.4e-06 Score=77.58 Aligned_cols=138 Identities=12% Similarity=-0.043 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSC 454 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 454 (566)
...+..+...+.+.|++++|+..|++..+.- |... .... .+... ...|. ...|..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~----~~~~----------~~~~-------~~~~~---~~~~~~~~~~~n 278 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV----EGSR----------AAAE-------DADGA---KLQPVALSCVLN 278 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHH----------HHSC-------HHHHG---GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----hcCc----------cccC-------hHHHH---HHHHHHHHHHHH
Confidence 3446666666777777777777777665421 1110 0000 01111 12232 567888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChH
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (566)
+..+|.+.|++++|++.+++.... .+...|..+..++...|++++|...+++++++.|.+..++..+..++...++.+
T Consensus 279 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 279 IGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999987653 457788889999999999999999999999999999999999999999999988
Q ss_pred HHHHH
Q 042098 533 DSAKM 537 (566)
Q Consensus 533 ~A~~~ 537 (566)
++.+.
T Consensus 359 ~a~k~ 363 (370)
T 1ihg_A 359 DKEKA 363 (370)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.4e-06 Score=75.40 Aligned_cols=121 Identities=7% Similarity=-0.013 Sum_probs=93.2
Q ss_pred hhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-C----------------HHHHH
Q 042098 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-D----------------EIVLG 485 (566)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~----------------~~~~~ 485 (566)
...|+++.+.+.|+..... .......+..+...+.+.|++++|+..|++.... | + ...|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3456666666666543322 1112456778888999999999999999987542 1 1 26788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.+..++...|++++|...++++++..|.++..+..++.+|...|++++|.+.+++..+...
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 8889999999999999999999999999999999999999999999999999999887643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.6e-06 Score=84.64 Aligned_cols=116 Identities=9% Similarity=-0.013 Sum_probs=90.0
Q ss_pred HHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHH
Q 042098 422 ACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTD 498 (566)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 498 (566)
.+.+.|++++|.+.+++..+. .|+ ...+..+..+|.+.|++++|++.+++.... .+...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 455677888888888877764 444 667777888888888888888888776542 45678888889999999999
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHH--HHhCCChHHHHHHHHH
Q 042098 499 VSQRVMQLLLEIESSNSGNYVISSKI--FANLKMWDDSAKMRAL 540 (566)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 540 (566)
+|++.++++++..|.+...+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999988888 8889999999998873
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.5e-06 Score=80.70 Aligned_cols=152 Identities=8% Similarity=-0.065 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 455 (566)
...+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~----~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nl 236 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY----MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH----SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----hccchh-------hhhcccHHHHHHHHH-----------HHHHHHH
Confidence 556777777888889999999999988874 365442 223344444433221 2367888
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH-HHhCCChH
Q 042098 456 VDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI-FANLKMWD 532 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~ 532 (566)
..+|.+.|++++|+..+++... ..+...|..+..++...|++++|...|+++++++|.+..++..+..+ ....+..+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988764 24677888889999999999999999999999999999999888887 44567788
Q ss_pred HHHHHHHHHHhCCCccC
Q 042098 533 DSAKMRALMREKGVSKT 549 (566)
Q Consensus 533 ~A~~~~~~~~~~g~~~~ 549 (566)
++.+++++|.......+
T Consensus 317 ~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHhhCCCCCCC
Confidence 88888888876654433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0012 Score=61.43 Aligned_cols=224 Identities=9% Similarity=-0.011 Sum_probs=150.5
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 042098 87 NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL-ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYA 165 (566)
Q Consensus 87 ~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 165 (566)
+.+.....+. +..++|+++++.+...... +..+|+.--..+...+ +++++++.++.++... +-+..+|+.....+.
T Consensus 58 ~~~r~~~~~~-e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 58 DYFRAIAAKE-EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHTT-CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3333344444 6778999999999986422 4445666666666677 5999999999999864 446677887777777
Q ss_pred hc-C-CHHHHHHHHhccCCC---ChhHHHHHHHHHHhcCChh--------HHHHHHHHhHHCCCCCCHHHHHHHHHHhcC
Q 042098 166 RC-G-KLDSARKVFDEIRER---DLVSWNSMISGYSKMGYAK--------EAVELFGRMREEEFLPDEITLVSVLGSCGD 232 (566)
Q Consensus 166 ~~-~-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 232 (566)
+. + ++++++.+++.+.+. |..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 66 6 889999999998874 5556666555555555566 899999999875433 66677766666666
Q ss_pred CCC-------chhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCH--------------------HHHHHHHhcCCC--
Q 042098 233 LGD-------LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL--------------------VPARRVFDAMVN-- 283 (566)
Q Consensus 233 ~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~-- 283 (566)
.+. ++++.......+...+. |...|+.+-..+.+.|.. ....+...++..
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 665 46677777777776654 566666666666665543 334444444422
Q ss_pred -------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 284 -------KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 284 -------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
++...+..+...|...|+.++|.++++.+.+.
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 34456677778888888888888888887643
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.18 E-value=2.2e-05 Score=74.11 Aligned_cols=128 Identities=7% Similarity=-0.010 Sum_probs=109.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC----------------HHHHHHHHHHHhhhCcHHHHHHHHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN----------------DVTFIGVLSACVHAGLVDEGRRLFDL 438 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~----------------~~t~~~ll~~~~~~g~~~~A~~~~~~ 438 (566)
+...+..+...|.+.|++++|+..|++..+.. |+ ...+..+..++.+.|++++|+..+++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~----p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL----EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh----hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45678889999999999999999999999864 43 47889999999999999999999999
Q ss_pred hHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 042098 439 MSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVS-QRVMQLLLE 509 (566)
Q Consensus 439 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~ 509 (566)
..+. .|+ ...+..+..+|...|++++|+..|++... ..+...+..+..++...|+.++| ...++++..
T Consensus 222 al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 222 ALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9875 454 77899999999999999999999998765 24567888888999999999988 556777664
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00027 Score=65.65 Aligned_cols=164 Identities=9% Similarity=-0.043 Sum_probs=97.7
Q ss_pred ChhHHHHHHHHHHHc-C-ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHH--------HHHHHHHHhHHhcC
Q 042098 375 NEVSWNAMISALAFN-G-RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD--------EGRRLFDLMSSSFG 444 (566)
Q Consensus 375 ~~~~~~~li~~~~~~-~-~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~ 444 (566)
+..+|+--..++... + ++++++++++++.+.. +-|...|+.-...+.+.|.++ ++++.++++.+. .
T Consensus 122 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d---pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-d 197 (349)
T 3q7a_A 122 SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD---PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-D 197 (349)
T ss_dssp CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC---TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-C
T ss_pred cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-C
Confidence 455566555555554 5 6777777777777654 334555554444444444444 777777777765 2
Q ss_pred CCCChhHHHHHHHHHHhcCC-------HHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCH------------------
Q 042098 445 LIPKSEHYSCMVDLYARAGH-------LSEAWDFVERMPE--KVDEIVLGALLGACQKQKNT------------------ 497 (566)
Q Consensus 445 ~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~------------------ 497 (566)
.-|...|+.....+.+.++ ++++++.+++... ..+...|+.+-..+.+.|..
T Consensus 198 -p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 198 -GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNP 276 (349)
T ss_dssp -TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----
T ss_pred -CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence 2245566666666666665 5677777766543 24566666665555555442
Q ss_pred --HHHHHHHHHHHhhC------CCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 498 --DVSQRVMQLLLEIE------SSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 498 --~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.........+.... +.++.+...|+++|...|+.++|.++++.+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222222222 46777888899999999999999999998864
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.16 E-value=9.1e-06 Score=74.57 Aligned_cols=111 Identities=11% Similarity=-0.043 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHH
Q 042098 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGAL 487 (566)
Q Consensus 411 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l 487 (566)
.+...+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|++.+++.... .+...+..+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35667778888899999999999999998875 45 4778888999999999999999999987753 456778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (566)
..++...|++++|...++++++.+|+++..+...+..
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 8999999999999999999999988775444433333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.4e-05 Score=74.99 Aligned_cols=165 Identities=7% Similarity=-0.126 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH----HHHHHHHHHhhhCcHHHHHHHHHHhHHhc---CCCCC-h
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV----TFIGVLSACVHAGLVDEGRRLFDLMSSSF---GLIPK-S 449 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~----t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~ 449 (566)
++..+...|...|++++|.+.+..+.+.-. ..++.. ..+.+-..+...|+.+.|..+++...... +..+. .
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMM-QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHH-TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 467788999999999999999988765310 112221 22223333445788999999988776431 22222 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-------C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC----
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE-------K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE---SSN---- 514 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~---- 514 (566)
.++..+...|...|++++|..++++... + .....+..++..|...|++++|..+++++.... +.+
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 5788899999999999999999887532 1 234577888899999999999999999998763 222
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 515 SGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 515 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
...+..++..+...|++++|.+.+.+..+
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 24567788899999999999998877754
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-05 Score=62.97 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=42.9
Q ss_pred HHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCH
Q 042098 421 SACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNT 497 (566)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 497 (566)
..+.+.|++++|...++...+. .|+ ...+..+..++...|++++|+..|++.... .+...+..+..++...|++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3444445555555555544433 232 344444445555555555555555444321 2344455555555566666
Q ss_pred HHHHHHHHHHHhhCCCC
Q 042098 498 DVSQRVMQLLLEIESSN 514 (566)
Q Consensus 498 ~~A~~~~~~~~~~~p~~ 514 (566)
++|...++++++.+|.+
T Consensus 102 ~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhCcCC
Confidence 66666666666555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-05 Score=61.99 Aligned_cols=99 Identities=12% Similarity=-0.069 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C---CHHHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V---DEIVLGALLGA 490 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~l~~~ 490 (566)
.+..+...+...|++++|...+++..+. . +.+...+..+...+...|++++|++.+++.... | +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL-D-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh-C-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444445555556666666666555543 1 112445555556666666666666666554432 2 35566666666
Q ss_pred HHhc-CCHHHHHHHHHHHHhhCCCCc
Q 042098 491 CQKQ-KNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 491 ~~~~-~~~~~A~~~~~~~~~~~p~~~ 515 (566)
+... |++++|.+.++++....|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 777777777777777666543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.001 Score=65.15 Aligned_cols=32 Identities=13% Similarity=-0.143 Sum_probs=17.7
Q ss_pred CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
|.+......++..+.- ..+++.+.+.+|...|
T Consensus 353 ~y~~i~l~~la~~l~~--~~~~~E~~l~~lI~~~ 384 (434)
T 4b4t_Q 353 PFECVEISHISKIIGL--DTQQVEGKLSQMILDK 384 (434)
T ss_dssp SCSCEEHHHHHHHHTC--CHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHhCc--CHHHHHHHHHHHHhCC
Confidence 4444444444444332 5667777777776544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0012 Score=61.01 Aligned_cols=169 Identities=11% Similarity=-0.019 Sum_probs=120.3
Q ss_pred CCChhHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCc-HHHHHHHHHHhHHhcCCCCCh
Q 042098 373 VTNEVSWNAMISALAFNGR--AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL-VDEGRRLFDLMSSSFGLIPKS 449 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~ 449 (566)
+.+..+|+--..++...++ +++++.+++++.+.. +-|...|+.-.-.+...|. ++++++.++.+.+. . +-|.
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~-p~N~ 179 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-N-FSNY 179 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-C-SCCH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-C-CCCH
Confidence 3467788877777777774 899999999999875 4566777666666667777 68999999998876 2 2245
Q ss_pred hHHHHHHHHHHhc--------------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc-----------CCHHHHHH
Q 042098 450 EHYSCMVDLYARA--------------GHLSEAWDFVERMPE--KVDEIVLGALLGACQKQ-----------KNTDVSQR 502 (566)
Q Consensus 450 ~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~-----------~~~~~A~~ 502 (566)
..|+.....+.+. +.++++++.+.+... +.|...|+-+-..+.+. +.++++++
T Consensus 180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 180 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 6666665555554 457888888887764 24666676555555544 45789999
Q ss_pred HHHHHHhhCCCCchhHHHHHHH---HHhCCChHHHHHHHHHHHhCCC
Q 042098 503 VMQLLLEIESSNSGNYVISSKI---FANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 503 ~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.++++++.+|++.-.+..++.. ....|..+++...++++.+.++
T Consensus 260 ~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 260 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 9999999999985554444332 2246888899999998887543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.09 E-value=1e-05 Score=67.23 Aligned_cols=96 Identities=10% Similarity=-0.018 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhC--------CCCC-------CC-CHHHHHHHHHHHhhhCcHHHHHHHHHHhH
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKE--------GGAA-------RP-NDVTFIGVLSACVHAGLVDEGRRLFDLMS 440 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------g~~~-------~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 440 (566)
..+......+.+.|++++|+..|.+.... .+ . .| +...+..+..++.+.|++++|+..++...
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKP-GEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCT-TSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34444455555555555555555555553 00 0 01 11334444445555555555555555554
Q ss_pred HhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 441 SSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 441 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
+. .|+ ...|..+..+|...|++++|+..|++..
T Consensus 91 ~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 91 KR---EETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hc---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 33 232 4445555555555555555555555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.08 E-value=2.2e-05 Score=58.91 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
.+...+..+..++...|++++|+..|+++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356677788888888888888998989888888888888888888898999999988888877653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.7e-05 Score=64.17 Aligned_cols=136 Identities=11% Similarity=0.080 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC----HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC---
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN----DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK--- 448 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--- 448 (566)
..++..+...+...|++++|...+++..+... -.++ ..++..+...+...|++++|...+++..+...-.++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-EFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 34678888999999999999999999876420 0112 246777888899999999999999988764211122
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 449 -SEHYSCMVDLYARAGHLSEAWDFVERMPEK----V----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 449 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
...+..+...+...|++++|.+.+++.... . ....+..+...+...|++++|.+.++++++...
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 456778889999999999999998876531 1 235667788899999999999999999987643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.2e-06 Score=65.88 Aligned_cols=85 Identities=9% Similarity=0.020 Sum_probs=60.4
Q ss_pred hcCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHH
Q 042098 461 RAGHLSEAWDFVERMPEK----V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535 (566)
Q Consensus 461 ~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 535 (566)
..|++++|+..|++.... | +...+..+..++...|++++|+..++++++.+|+++.++..++.++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356777777777776543 3 24556667777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCC
Q 042098 536 KMRALMREKG 545 (566)
Q Consensus 536 ~~~~~~~~~g 545 (566)
+.+++..+..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8887776543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.3e-05 Score=77.30 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=98.6
Q ss_pred HHhhhCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCC-HHHHH
Q 042098 422 ACVHAGLVDEGRRLFDLMSSSF--GLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPE---------KVD-EIVLG 485 (566)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~~~ 485 (566)
.+...|++++|+.++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++... .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456788999988888776542 12222 45788899999999999999988887643 233 46688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCchh---HHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCce
Q 042098 486 ALLGACQKQKNTDVSQRVMQLLLEI-----ESSNSGN---YVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552 (566)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 552 (566)
.|...|...|++++|+.+++++++. +|++|.+ ...+..++...|++++|+.++++++++-....|-+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~ 472 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQ 472 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 8999999999999999999999874 6776654 45788889999999999999999987654443433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.02 E-value=3.2e-05 Score=62.55 Aligned_cols=72 Identities=8% Similarity=-0.009 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE--------KV-DEIVL----GALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (566)
.|..+..++.+.|++++|+..+++... .| +...| .....++...|++++|+..|++++++.|.+..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 566666666677776666666655432 34 45567 888899999999999999999999999998776
Q ss_pred HHHHH
Q 042098 518 YVISS 522 (566)
Q Consensus 518 ~~~l~ 522 (566)
+..+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 65553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00091 Score=67.62 Aligned_cols=153 Identities=8% Similarity=-0.037 Sum_probs=122.3
Q ss_pred ChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC--cHHHHHHHHHHhHHh
Q 042098 375 NEVSWNAMISALAFNGR----------AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG--LVDEGRRLFDLMSSS 442 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g--~~~~A~~~~~~~~~~ 442 (566)
+..+|+.--.++...|+ ++++++.++++.+.. +-+...|..-...+.+.+ +++++.+.++++.+.
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 44456655555555555 899999999999865 345677777777777888 779999999999976
Q ss_pred cCCCC-ChhHHHHHHHHHHhcC-CHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc--------------CCHHHHHHHH
Q 042098 443 FGLIP-KSEHYSCMVDLYARAG-HLSEAWDFVERMPEK--VDEIVLGALLGACQKQ--------------KNTDVSQRVM 504 (566)
Q Consensus 443 ~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~--------------~~~~~A~~~~ 504 (566)
.| +...|+.-..++.+.| .++++++.++++.+. -+...|+.....+.+. +.++++.+.+
T Consensus 139 ---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~ 215 (567)
T 1dce_A 139 ---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV 215 (567)
T ss_dssp ---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH
T ss_pred ---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHH
Confidence 34 4677777777888888 899999999998874 4677888877766653 5679999999
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhCCChHH
Q 042098 505 QLLLEIESSNSGNYVISSKIFANLKMWDD 533 (566)
Q Consensus 505 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (566)
++++..+|.+..+|..+..++.+.+++++
T Consensus 216 ~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 216 QNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999998665
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.3e-05 Score=60.59 Aligned_cols=64 Identities=11% Similarity=-0.008 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
...+..+...|...|++++|+..+++... ..+...|..+..++...|++++|...++++++..|
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44555555555555555555555555432 12344455555555555555555555555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.6e-05 Score=72.68 Aligned_cols=136 Identities=10% Similarity=0.122 Sum_probs=67.2
Q ss_pred cCCHHHHHHHHccCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHH
Q 042098 358 CGSIDDALKVFEDMP--VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435 (566)
Q Consensus 358 ~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~ 435 (566)
.|++++|...|+... .|+... +...++..++...+ . ...|..+..++.+.|++++|+..
T Consensus 192 ~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l---~---------~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 192 EEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAV---K---------NPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp SSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHH---H---------THHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHH---H---------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 388889988887654 332211 11222233322211 1 12677778888889999999999
Q ss_pred HHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhC
Q 042098 436 FDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGA-CQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 436 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~ 511 (566)
++...+. .| +...|..+..+|...|++++|+..|++.... |+ ...+..+... ....+..+.+...|++++...
T Consensus 253 ~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 253 CNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9888865 45 4678888889999999999999999988753 43 3444444444 234466788888999998888
Q ss_pred CCCc
Q 042098 512 SSNS 515 (566)
Q Consensus 512 p~~~ 515 (566)
|.++
T Consensus 330 p~~~ 333 (338)
T 2if4_A 330 DEGG 333 (338)
T ss_dssp ----
T ss_pred CCCC
Confidence 7764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00012 Score=58.64 Aligned_cols=113 Identities=6% Similarity=-0.070 Sum_probs=72.4
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 042098 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK----QKNTDVSQR 502 (566)
Q Consensus 427 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~ 502 (566)
+++++|...|++..+. | .|+ .. |...|...+.+++|++.|++..+..+...+..|...|.. .+|.++|.+
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3556666666666554 3 122 22 555555555666666666666555566666666666666 667777777
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHh----CCChHHHHHHHHHHHhCCCc
Q 042098 503 VMQLLLEIESSNSGNYVISSKIFAN----LKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 503 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~ 547 (566)
.|+++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 77777664 456677777777777 77777777777777776653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.91 E-value=3.8e-05 Score=73.38 Aligned_cols=115 Identities=11% Similarity=0.012 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 493 (566)
..+..+...+.+.|++++|+..|++..+. .++.. .....+++.+ ....+...|..+..++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~~~-----~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADGAK-----LQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHHGG-----GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHHHH-----HHHHHHHHHHHHHHHHHh
Confidence 34555566666677777777777666542 11100 0001111110 001345778888999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.|++++|+..++++++.+|.++.++..++.+|...|++++|.+.++++.+...
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999987643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.6e-05 Score=60.90 Aligned_cols=92 Identities=11% Similarity=-0.092 Sum_probs=71.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHH
Q 042098 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN------SGNYV 519 (566)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 519 (566)
+...+..+...+.+.|++++|++.|++... +.+...|..+..++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 345666777778888888888888877654 2456778888888999999999999999999999988 77778
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q 042098 520 ISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 520 ~l~~~~~~~g~~~~A~~~~~ 539 (566)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887777665543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.90 E-value=4.8e-05 Score=75.13 Aligned_cols=67 Identities=9% Similarity=-0.021 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 481 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
...|..+..++.+.|++++|+..++++++++|.+...|..++.+|...|++++|...++++.+....
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 5678889999999999999999999999999999999999999999999999999999999886543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.88 E-value=8.9e-05 Score=54.41 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCc
Q 042098 479 VDEIVLGALLGACQKQKN---TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 551 (566)
++...+..+..++...++ .++|..+++++++.+|+++.....++..+.+.|++++|...|+++.+.... +|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 456677777777765554 799999999999999999999999999999999999999999999988766 443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.87 E-value=4.5e-05 Score=55.82 Aligned_cols=81 Identities=19% Similarity=0.161 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
...+..+...+...|++++|+..+++... ..+...+..+..++...|++++|...++++++.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34556666667777777777777766543 2345667777788888888888888888888888888888888887776
Q ss_pred hCC
Q 042098 527 NLK 529 (566)
Q Consensus 527 ~~g 529 (566)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0096 Score=55.02 Aligned_cols=230 Identities=9% Similarity=-0.016 Sum_probs=139.2
Q ss_pred hcCCH-HHHHHHHhcCCCCCh---hHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 042098 267 KCGAL-VPARRVFDAMVNKDV---VTWNAMITAYAQNGL----------SNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332 (566)
Q Consensus 267 ~~g~~-~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 332 (566)
+.|.+ ++|+.+++.+..-|+ .+|+.--..+...+. +++++.+++.+..... -+..+++.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHh
Confidence 34443 356777776644322 334433222222222 5677777777766421 23444444444444
Q ss_pred ccCC--hhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCCC
Q 042098 333 SIGA--LDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR-AHEALLLFERMSKEGGAA 409 (566)
Q Consensus 333 ~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~~ 409 (566)
+.|. ++.+..+++.+.+... .|..+|+--..++...|. ++++++.+.++++..
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dp---------------------rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--- 175 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADE---------------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--- 175 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---
T ss_pred ccCcccHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---
Confidence 4442 4555555555554332 367777777777777777 588888888888865
Q ss_pred CCCHHHHHHHHHHHhhh--------------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc-----------C
Q 042098 410 RPNDVTFIGVLSACVHA--------------GLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARA-----------G 463 (566)
Q Consensus 410 ~p~~~t~~~ll~~~~~~--------------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-----------g 463 (566)
+-|...|+.....+... +.++++++.+...... .|+ ...|+-+-..+.+. +
T Consensus 176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~ 252 (331)
T 3dss_A 176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKST 252 (331)
T ss_dssp SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHH
Confidence 34555555544444333 4578888888888765 555 55665555555554 4
Q ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 042098 464 HLSEAWDFVERMPE-KVDEIVLGALL-----GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525 (566)
Q Consensus 464 ~~~~A~~~~~~~~~-~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (566)
.++++++.++++.+ .|+. .|..+. .+....|..++....+.++.+++|....-|..+..-+
T Consensus 253 ~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 253 VLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 57888888888765 3554 343322 2223467888999999999999999888888775544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0001 Score=56.22 Aligned_cols=68 Identities=10% Similarity=-0.033 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
+...|..+...+...|++++|...++++++..|.++..+..++.++...|++++|.+.++++.+....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45678888899999999999999999999999999999999999999999999999999999886544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=1.2e-05 Score=64.95 Aligned_cols=98 Identities=8% Similarity=0.016 Sum_probs=62.1
Q ss_pred hhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042098 424 VHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502 (566)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 502 (566)
.+.+.+++|.+.++...+. .|+ ...|..+..++...++++.+....+ .+++|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~~eAi~ 67 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HHHHHHH
Confidence 3445566666666666644 343 4555555555555554432222111 2567888
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhCC-----------ChHHHHHHHHHHHhCCC
Q 042098 503 VMQLLLEIESSNSGNYVISSKIFANLK-----------MWDDSAKMRALMREKGV 546 (566)
Q Consensus 503 ~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~g~ 546 (566)
.|+++++++|++..+|..++.+|...| ++++|.+.|+++.+...
T Consensus 68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 888888888888888888888887764 78888888887776544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00066 Score=67.27 Aligned_cols=130 Identities=12% Similarity=0.020 Sum_probs=92.6
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHH
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHY 452 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~ 452 (566)
.+..+|..+..+|.+.|++++|+..+++..+.. +-+...+..+..++...|++++|.+.+++..+. .|+ ...+
T Consensus 38 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~p~~~~~~ 111 (477)
T 1wao_1 38 SNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYYRRAASNMALGKFRAALRDYETVVKV---KPHDKDAK 111 (477)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCTTHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHH
Confidence 367889999999999999999999999999864 345788889999999999999999999999875 444 4455
Q ss_pred HHHHHH--HHhcCCHHHHHHHHH-----------hCCCC-------------CCHHHHHHHHHHHHhcCC--HHHHHHHH
Q 042098 453 SCMVDL--YARAGHLSEAWDFVE-----------RMPEK-------------VDEIVLGALLGACQKQKN--TDVSQRVM 504 (566)
Q Consensus 453 ~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~-------------~~~~~~~~l~~~~~~~~~--~~~A~~~~ 504 (566)
..+..+ +.+.|++++|++.++ +.... .+...+..++..+...+. .+.+..++
T Consensus 112 ~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~ 191 (477)
T 1wao_1 112 MKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQIL 191 (477)
T ss_dssp HHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 556555 888999999999998 33220 123445566666666554 34444456
Q ss_pred HHHHh
Q 042098 505 QLLLE 509 (566)
Q Consensus 505 ~~~~~ 509 (566)
.++.+
T Consensus 192 ~~a~e 196 (477)
T 1wao_1 192 VQVKE 196 (477)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00024 Score=51.78 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
+...+..+...+...|++++|...++++++..|.++..+..++.++...|++++|.+.+++..+...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3567778888999999999999999999999999999999999999999999999999999987643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00078 Score=68.11 Aligned_cols=156 Identities=11% Similarity=0.023 Sum_probs=124.0
Q ss_pred HcC-ChHHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHhhhCc----------HHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 042098 388 FNG-RAHEALLLFERMSKEGGAARPND-VTFIGVLSACVHAGL----------VDEGRRLFDLMSSSFGLIPK-SEHYSC 454 (566)
Q Consensus 388 ~~~-~~~~A~~~~~~m~~~g~~~~p~~-~t~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~p~-~~~~~~ 454 (566)
+.| ..++|++.++++.... |+. ..|+.--..+...|+ ++++...++.+.+. .|. ..+|..
T Consensus 40 ~~~~~~eeal~~~~~~l~~n----P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~h 112 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHH 112 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 344 4568899999999854 554 455554455555565 89999999999876 454 667777
Q ss_pred HHHHHHhcC--CHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC-
Q 042098 455 MVDLYARAG--HLSEAWDFVERMPEK--VDEIVLGALLGACQKQK-NTDVSQRVMQLLLEIESSNSGNYVISSKIFANL- 528 (566)
Q Consensus 455 l~~~~~~~g--~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~- 528 (566)
-..++.+.| +++++++.++++.+. -+...|+.-...+.+.| ..+++.+.++++++.+|.|.++|...+.++.+.
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhc
Confidence 778888899 779999999998763 57788888888888888 899999999999999999999999999998874
Q ss_pred -------------CChHHHHHHHHHHHhCCCccCC
Q 042098 529 -------------KMWDDSAKMRALMREKGVSKTP 550 (566)
Q Consensus 529 -------------g~~~~A~~~~~~~~~~g~~~~~ 550 (566)
+.++++.+.++++.+.......
T Consensus 193 ~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 5679999999888876554433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.013 Score=44.66 Aligned_cols=141 Identities=11% Similarity=0.069 Sum_probs=106.1
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 042098 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465 (566)
Q Consensus 386 ~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (566)
+.-.|..++..+++.+.... .+..-||-++--....-+-+-..++++.+-+-|.+.+-. -...++.+|.+.|.
T Consensus 17 ~ildG~v~qGveii~k~~~s-----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~-NlKrVi~C~~~~n~- 89 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS-----STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT- 89 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC-
T ss_pred HHHhhhHHHHHHHHHHHcCC-----CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhh-cHHHHHHHHHHhcc-
Confidence 45678899999999998764 355667777766666777777788887776544433211 12344455554443
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 466 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
+....+..+......|+.+.-.+++..++..+|.++.....++.+|.+.|+..+|.+++.++.++|
T Consensus 90 --------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 90 --------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp --------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred --------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 455667778889999999999999999877788889999999999999999999999999999999
Q ss_pred Cc
Q 042098 546 VS 547 (566)
Q Consensus 546 ~~ 547 (566)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 85
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0014 Score=52.40 Aligned_cols=113 Identities=9% Similarity=-0.025 Sum_probs=94.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCC
Q 042098 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR----AGH 464 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 464 (566)
.+++++|+.+|++..+.| .|+.. |...|...+.+++|.+.|++..+. | +...+..|...|.. .++
T Consensus 8 ~~d~~~A~~~~~~aa~~g---~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN---EMFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT---CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCC
T ss_pred ccCHHHHHHHHHHHHcCC---CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCcc
Confidence 346889999999999887 34444 666677778888999999988875 3 56788888888888 889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 042098 465 LSEAWDFVERMPEKVDEIVLGALLGACQK----QKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 465 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 512 (566)
+++|++.|++..+..+...+..|...|.. .+|.++|.+.++++.+.+.
T Consensus 77 ~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 77 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999998877888889999999988 8999999999999998753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0005 Score=67.80 Aligned_cols=127 Identities=9% Similarity=-0.058 Sum_probs=94.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhC-----CCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc--CCCCC----hh
Q 042098 383 ISALAFNGRAHEALLLFERMSKE-----GGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSF--GLIPK----SE 450 (566)
Q Consensus 383 i~~~~~~~~~~~A~~~~~~m~~~-----g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~p~----~~ 450 (566)
+..+...|++++|+.++++..+. |. -.|+ ..+++.|...|...|++++|..++++...-+ -+.|+ ..
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFAD-TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 34466789999999999887642 21 1222 4678899999999999999999998876531 12233 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE---------KVDE-IVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
+++.|...|...|++++|+.++++... .|+. .+.+.+..++...+.+++|+.++.++.+.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999887653 2433 33455567788889999999999999764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00033 Score=56.52 Aligned_cols=125 Identities=14% Similarity=0.077 Sum_probs=88.8
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcH----------HHHHHHHHHhHHhcCCCCC-hhHHHH
Q 042098 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV----------DEGRRLFDLMSSSFGLIPK-SEHYSC 454 (566)
Q Consensus 386 ~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~----------~~A~~~~~~~~~~~~~~p~-~~~~~~ 454 (566)
..+.+++++|...+++..+.. +-+...+..+..++...+++ ++|+..|++..+. .|+ ...|..
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~ 85 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 456678999999999999975 45678888888888888765 5888888888754 666 567888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHH
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (566)
+..+|...|++ .|+... ..|++++|++.|+++++++|++......+ ...++|
T Consensus 86 LG~ay~~lg~l------------~P~~~~---------a~g~~~eA~~~~~kAl~l~P~~~~y~~al-------~~~~ka 137 (158)
T 1zu2_A 86 IGNAYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSL-------EMTAKA 137 (158)
T ss_dssp HHHHHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHTH
T ss_pred HHHHHHHhccc------------Ccchhh---------hhccHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHhC
Confidence 88888777654 333311 13789999999999999999976433333 223445
Q ss_pred HHHHHHHHhC
Q 042098 535 AKMRALMREK 544 (566)
Q Consensus 535 ~~~~~~~~~~ 544 (566)
-++.-.+...
T Consensus 138 ~el~~~~~~~ 147 (158)
T 1zu2_A 138 PQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHHHS
T ss_pred HhccCccccc
Confidence 5555555444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00055 Score=52.61 Aligned_cols=62 Identities=8% Similarity=-0.012 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 481 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
...+..+...+...|++++|+..++++++.+|.+...+..++.+|...|++++|...+++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444555555555555555555555554455555555555555555555544443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00057 Score=50.78 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=58.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-C-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK-V-DEI-VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
....+.+.|++++|++.+++.... | +.. .+..+..++...|++++|.+.|+++++.+|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456778889999999998887642 3 456 77888888888999999999999999999988876632 445
Q ss_pred HHHHHHHHHH
Q 042098 532 DDSAKMRALM 541 (566)
Q Consensus 532 ~~A~~~~~~~ 541 (566)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00023 Score=53.03 Aligned_cols=52 Identities=13% Similarity=0.255 Sum_probs=25.8
Q ss_pred HHhhhCcHHHHHHHHHHhHHhcCCCCC-hh-HHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 422 ACVHAGLVDEGRRLFDLMSSSFGLIPK-SE-HYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
.+...|++++|...++...+. .|+ .. .+..+..+|...|++++|++.|++..
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555443 232 33 44455555555555555555555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0016 Score=48.43 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
+...+..+..+|...|++++|+..|++..+.. +-+...|..+..+|...|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD---PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56677778888888888888888888887754 234566777777888888888888888777654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00036 Score=67.58 Aligned_cols=61 Identities=8% Similarity=0.085 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCc---hhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEI-----ESSNS---GNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
.+++.|..+|...|++++|+.+++++++. +|+++ ..+..|+.+|...|++++|..+++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 44555555555566666666666555542 23332 344555566666666666666655554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00073 Score=65.56 Aligned_cols=100 Identities=15% Similarity=0.018 Sum_probs=53.7
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCC-HHH
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSF--GLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPE---------KVD-EIV 483 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~ 483 (566)
+..+...|++++|..++++..... -+.|+ ..+++.|..+|...|++++|+.++++... .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444555566666666666655321 11222 23555666666666666666666555432 122 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCchhHH
Q 042098 484 LGALLGACQKQKNTDVSQRVMQLLLEI-----ESSNSGNYV 519 (566)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~ 519 (566)
++.|...|...|++++|+.+++++++. +|++|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 555566666666666666666666666 355554433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0062 Score=56.58 Aligned_cols=137 Identities=9% Similarity=-0.001 Sum_probs=67.5
Q ss_pred CChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhh---hC-----cHHHHHHHHHHh
Q 042098 374 TNEVSWNAMISALA--FNG---RAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVH---AG-----LVDEGRRLFDLM 439 (566)
Q Consensus 374 ~~~~~~~~li~~~~--~~~---~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~---~g-----~~~~A~~~~~~~ 439 (566)
.+..+|...+.+.. ..+ +..+|..+|++..+.. |+ ...+..+..++.. .+ ........++..
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD----P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS----PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 45667777776543 223 3577888888888754 55 3444443333321 00 011111111111
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 440 SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 440 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
........+..+|..+...+...|++++|...+++... .|+...|..+...+.-.|+.++|.+.++++..++|..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 11001122344555555555555666666666655543 2454455455555555666666666666666665554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.10 E-value=5.6e-06 Score=78.04 Aligned_cols=225 Identities=11% Similarity=0.095 Sum_probs=111.5
Q ss_pred HHHHhhcCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhH
Q 042098 58 LLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137 (566)
Q Consensus 58 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 137 (566)
+..+.+..|.+.+|++-|-+. .|+..|..+|.+..+. |++++-+..+....+.. -++..=+.|+-+|++.+++.+
T Consensus 60 LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~-~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~e 134 (624)
T 3lvg_A 60 LAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTS-GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAE 134 (624)
T ss_dssp HHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTS-SCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSST
T ss_pred HHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHH
Confidence 444444445555554444322 3444455555555555 55555555554443321 122333445555555555443
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCC
Q 042098 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217 (566)
Q Consensus 138 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 217 (566)
-.+++ -.|+..-...+.+-|...|.++.|.-+|..+.. |.-|..++.+.|++..|.+.-++ .
T Consensus 135 lEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK------A 196 (624)
T 3lvg_A 135 LEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK------A 196 (624)
T ss_dssp TTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT------C
T ss_pred HHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh------c
Confidence 33322 134444444455555555555555555544432 22233334444444444332211 2
Q ss_pred CCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhHHHHHHH
Q 042098 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM---VNKDVVTWNAMIT 294 (566)
Q Consensus 218 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~ 294 (566)
-++.||..+-.+|...+++..|...=-.++-..-. ...++..|...|.+++-+.+++.- .+.....|+-|.-
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaI 271 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 271 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 24567777777777777766654432222211111 123566777777777777777765 3346667777776
Q ss_pred HHHHcCCHHHHHHHHHH
Q 042098 295 AYAQNGLSNEAIMLFNR 311 (566)
Q Consensus 295 ~~~~~~~~~~a~~~~~~ 311 (566)
.|++- ++++.++.++.
T Consensus 272 LYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLEL 287 (624)
T ss_dssp HHHSS-CTTHHHHHHTT
T ss_pred HHHhc-CHHHHHHHHHH
Confidence 66654 45555554443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0025 Score=61.75 Aligned_cols=94 Identities=6% Similarity=-0.018 Sum_probs=68.4
Q ss_pred hCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCC-HHHHHHHHH
Q 042098 426 AGLVDEGRRLFDLMSSSF--GLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPE---------KVD-EIVLGALLG 489 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~~~~l~~ 489 (566)
.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++... .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 467777777777665431 22333 35778888888888888888888877643 233 456888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhh-----CCCCchhHH
Q 042098 490 ACQKQKNTDVSQRVMQLLLEI-----ESSNSGNYV 519 (566)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~ 519 (566)
.|...|++++|+.++++++++ +|++|.+-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999874 677776544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0089 Score=55.52 Aligned_cols=136 Identities=14% Similarity=0.073 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHHh--hh---CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh---cC-C-------HHHHHHH
Q 042098 409 ARPNDVTFIGVLSACV--HA---GLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYAR---AG-H-------LSEAWDF 471 (566)
Q Consensus 409 ~~p~~~t~~~ll~~~~--~~---g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-~-------~~~A~~~ 471 (566)
.+.+...|...+++.. .. .+..+|..+|++..+. .|+ ...|..+..+|.- .+ . ...+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3456667777776643 23 3468899999999865 777 3455544444431 11 1 1122222
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 472 VERMPE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 472 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
...+.. ..+...|..+...+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.++++...++..
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 222221 35777888887777778999999999999999996 46778899999999999999999999998876543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0046 Score=59.93 Aligned_cols=85 Identities=12% Similarity=0.014 Sum_probs=52.2
Q ss_pred HHHhcCCHHHHHHHHHhCCCC------C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCc---hhHH
Q 042098 458 LYARAGHLSEAWDFVERMPEK------V----DEIVLGALLGACQKQKNTDVSQRVMQLLLEI-----ESSNS---GNYV 519 (566)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~ 519 (566)
.+.+.|++++|+.++++.... | ...+++.+..+|...|++++|+.+++++++. +|++| ..+.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344566777777766654321 1 2345666667777777777777777776653 34333 3455
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 042098 520 ISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 520 ~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
.|+.+|...|++++|..+++++.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 66777777777777777766664
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.053 Score=57.74 Aligned_cols=47 Identities=26% Similarity=0.193 Sum_probs=34.8
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042098 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313 (566)
Q Consensus 265 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (566)
....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|..+.
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 445688888888877663 45678888888888888888888777653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0057 Score=54.36 Aligned_cols=87 Identities=9% Similarity=-0.020 Sum_probs=62.9
Q ss_pred HHHHHHHHhCCC-CCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCCCC-chhHHHHHHHHHhC-CChHHH
Q 042098 466 SEAWDFVERMPE-KVD---EIVLGALLGACQK-----QKNTDVSQRVMQLLLEIESSN-SGNYVISSKIFANL-KMWDDS 534 (566)
Q Consensus 466 ~~A~~~~~~~~~-~~~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 534 (566)
.+|...+++..+ .|+ ...|..+...|.. .|+.++|.+.|+++++++|+. ..++..+++.++.. |++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 344444444432 233 4456666666666 488899999999999988864 88888888888884 888999
Q ss_pred HHHHHHHHhCCCccCCce
Q 042098 535 AKMRALMREKGVSKTPGC 552 (566)
Q Consensus 535 ~~~~~~~~~~g~~~~~~~ 552 (566)
.+++++........+|+.
T Consensus 260 ~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 260 DEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHcCCCCCCCCh
Confidence 999988888777765654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.81 Score=46.24 Aligned_cols=56 Identities=9% Similarity=0.101 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPEKV-DEIVL-GALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
-.+....+.|+++.|...|+.|...+ +..-| -=+.+++...|+.++|..+|+.+.+
T Consensus 290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33344445667777777776665532 11111 1133455566666666666666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.24 Score=52.57 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=90.0
Q ss_pred HhcCCHHHHHH-HHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHH
Q 042098 266 GKCGALVPARR-VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344 (566)
Q Consensus 266 ~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 344 (566)
...+++++|.+ ++..++ +......++..+.+.|..++|+++.+.- ..-+.. ....
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~----~l~~---------- 665 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFEL----ALKV---------- 665 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHH----HHHH----------
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheeh----hhhc----------
Confidence 35678888877 554443 1222366677777888888887665311 111111 1122
Q ss_pred HHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh
Q 042098 345 KYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424 (566)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~ 424 (566)
|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+.
T Consensus 666 --------------~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~ 718 (814)
T 3mkq_A 666 --------------GQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHS 718 (814)
T ss_dssp --------------TCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHH
T ss_pred --------------CCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHH
Confidence 56666666665553 567899999999999999999999987743 223344444
Q ss_pred hhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 042098 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
..|+.+...++-+..... | -++.-..+|.+.|++++|++++.++
T Consensus 719 ~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 719 SFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 466666655554444332 2 1233334455667776666665554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.014 Score=43.59 Aligned_cols=70 Identities=14% Similarity=-0.002 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPE---------KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+..|...+.+.|+++.|...|+.... .+....+..+..++.+.|+++.|...++++++..|+++.+...+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 33455555555555555555544322 13456778888999999999999999999999999987775555
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0062 Score=48.51 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=72.2
Q ss_pred hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCHH
Q 042098 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG---HLSEAWDFVERMPEK--V--DEIVLGALLGACQKQKNTD 498 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~ 498 (566)
.+....+.+-|.+.... + .++..+...+..++++.+ +.++++.++++.... | ....+-.+.-++.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence 34567777778776654 4 367888888899999988 677999999887653 3 2445555667889999999
Q ss_pred HHHHHHHHHHhhCCCCchhHHHH
Q 042098 499 VSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+|.+.++.+++.+|++.......
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999987655543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.023 Score=45.26 Aligned_cols=81 Identities=12% Similarity=0.072 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC---cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHH
Q 042098 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG---LVDEGRRLFDLMSSSFGLIP--KSEHYSCMVDLYARAGHLS 466 (566)
Q Consensus 392 ~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 466 (566)
...+.+.|.+..+.| .++..+...+..++++++ +.++++.+++...+. . .| +...+..|.-+|.+.|+++
T Consensus 14 l~~~~~~y~~e~~~~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHTT---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHH
Confidence 445555666655555 356666666666666666 555777777777665 2 24 2445556666777777777
Q ss_pred HHHHHHHhCCC
Q 042098 467 EAWDFVERMPE 477 (566)
Q Consensus 467 ~A~~~~~~~~~ 477 (566)
+|.+.++.+.+
T Consensus 89 ~A~~y~~~lL~ 99 (152)
T 1pc2_A 89 KALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.027 Score=42.03 Aligned_cols=67 Identities=9% Similarity=-0.150 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIE-------SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
+..-+-.+...+...|+++.|...++++++.. +....++..|+.+|.+.|++++|..+++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34455678889999999999999999999863 34567899999999999999999999999987543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.16 Score=36.81 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=45.7
Q ss_pred CChhHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 374 TNEVSWNAMISALAFNGR---AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
+|...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456667777777655544 678888888887754 334556666667777788888888888887754
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.38 Score=36.72 Aligned_cols=94 Identities=12% Similarity=0.000 Sum_probs=61.0
Q ss_pred hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCHH
Q 042098 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE---AWDFVERMPEK--V--DEIVLGALLGACQKQKNTD 498 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~ 498 (566)
......+.+-+...... |. |+..+-..+..++.+.....+ ++.+++.+... | .....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 34444555555554443 32 556666666777777665554 77777776654 2 1223334557888999999
Q ss_pred HHHHHHHHHHhhCCCCchhHHHH
Q 042098 499 VSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+|.+.++.+++.+|.|..+....
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999987665543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.75 Score=37.56 Aligned_cols=45 Identities=22% Similarity=0.337 Sum_probs=24.3
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 042098 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312 (566)
Q Consensus 266 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (566)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3455566665555544 23445555555555555555555555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.19 Score=51.85 Aligned_cols=53 Identities=6% Similarity=0.009 Sum_probs=49.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
.-|...|+++.|+++.+++...-|.+..+|..|+.+|...|+|+.|+-.++-+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 55677899999999999999999999999999999999999999999998877
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.90 E-value=1.3 Score=36.20 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=54.6
Q ss_pred HHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHH
Q 042098 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242 (566)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 242 (566)
.....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+....+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345566666666666655 3455677777777777777777777766532 12222223334444443333
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 042098 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283 (566)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 283 (566)
-+.....|- ++.-..++.-.|+++++.++|.+..+
T Consensus 83 a~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 83 QNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 333322221 13333445556777777776665543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.34 Score=38.02 Aligned_cols=59 Identities=17% Similarity=0.067 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 463 GHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 463 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
++.++|.++|+.+.+ +.-...|-....--.+.|++..|.+++.+++.+.|.+...+...
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 566666666665532 12255666666666677888888888888888777665544443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.086 Score=46.91 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhc-----CCHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHh-cCC
Q 042098 429 VDEGRRLFDLMSSSFGLIPK---SEHYSCMVDLYARA-----GHLSEAWDFVERMPE-KV--DEIVLGALLGACQK-QKN 496 (566)
Q Consensus 429 ~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~-~~--~~~~~~~l~~~~~~-~~~ 496 (566)
...|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++... .| +..++......++. .|+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 4455555555553 3555 44666777777763 777777777777654 24 25556666666666 377
Q ss_pred HHHHHHHHHHHHhhCCC
Q 042098 497 TDVSQRVMQLLLEIESS 513 (566)
Q Consensus 497 ~~~A~~~~~~~~~~~p~ 513 (566)
.+++.+.++++++..|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 88888888888776655
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.92 E-value=0.16 Score=38.79 Aligned_cols=83 Identities=10% Similarity=-0.051 Sum_probs=62.2
Q ss_pred CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhC-C-CCchhHHHHHHHHHhCCChHHHHH
Q 042098 464 HLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDV---SQRVMQLLLEIE-S-SNSGNYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 464 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~ 536 (566)
....+.+.|.+... .++..+--.+..++.++.+... ++.+++.+.+.+ | ........|+.++.+.|+|++|++
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444444444322 3677777778888888886665 889999888876 5 456678889999999999999999
Q ss_pred HHHHHHhCCC
Q 042098 537 MRALMREKGV 546 (566)
Q Consensus 537 ~~~~~~~~g~ 546 (566)
+++.+.+..+
T Consensus 96 ~~~~lL~~eP 105 (126)
T 1nzn_A 96 YVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCC
Confidence 9999987544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.11 E-value=0.00016 Score=68.47 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 042098 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266 (566)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 266 (566)
.|..|.++....+.+.+|++.|-+. -|+..|..++.++.+.|.++.-...+....+..-+|.+. +.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHH
Confidence 4556666666666666666554221 134455666666666666666666666555544333333 56677777
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 042098 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311 (566)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 311 (566)
+.+++.+-++++. .||..-...+..-|...|.++.|.-+|..
T Consensus 128 k~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~ 169 (624)
T 3lvg_A 128 KTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 169 (624)
T ss_dssp TSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGG
T ss_pred hhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHh
Confidence 7766554443322 24444444555555555555555544443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.83 E-value=1.5 Score=34.04 Aligned_cols=75 Identities=12% Similarity=0.043 Sum_probs=52.0
Q ss_pred CCChhHHHHHHHHHHhcCCH---HHHHHHHHhCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 042098 446 IPKSEHYSCMVDLYARAGHL---SEAWDFVERMPEK-V--DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519 (566)
Q Consensus 446 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (566)
.|+..+--.+..++.+.... .+++.+++.+... | .....-.|.-++.+.|++++|.++.+.+++.+|.|..+-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56667777777788877754 4566777765432 3 2233344557888999999999999999999998865444
Q ss_pred H
Q 042098 520 I 520 (566)
Q Consensus 520 ~ 520 (566)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.71 E-value=2.7 Score=32.34 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHH
Q 042098 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437 (566)
Q Consensus 358 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 437 (566)
+|++......+-.+. .+....+..++.+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n---~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN---NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc---CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 344444444443333 23345666677788888888888888886543 46778888888888888888888888888
Q ss_pred HhHHhcCC
Q 042098 438 LMSSSFGL 445 (566)
Q Consensus 438 ~~~~~~~~ 445 (566)
+.-++ |+
T Consensus 150 ~AC~k-G~ 156 (172)
T 1wy6_A 150 EACKK-GE 156 (172)
T ss_dssp HHHHT-TC
T ss_pred HHHHh-hh
Confidence 87766 65
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.41 Score=45.51 Aligned_cols=68 Identities=9% Similarity=-0.050 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH-----hCCCccCCc
Q 042098 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR-----EKGVSKTPG 551 (566)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~~~~~ 551 (566)
...++..+...|+.+++...++.+...+|-+...+..++.+|.+.|+..+|.+.|+.+. +.|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34456677788888888888888888888888888888888888888888888887764 347766554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.09 E-value=1.1 Score=35.98 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 516 GNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
..-..++.+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 56677999999999999999998754
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.16 E-value=5.3 Score=37.66 Aligned_cols=163 Identities=9% Similarity=-0.044 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHhhh-CcHHHHHHHHHHhHHhcCCCCChhHH
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN---DVTFIGVLSACVHA-GLVDEGRRLFDLMSSSFGLIPKSEHY 452 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~---~~t~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~p~~~~~ 452 (566)
.+...|...|.+.|+.++...++.....--. .-|- ......++..+... +..+.-.++..+..+. . .-+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~-a-~~~~r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLS-SISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEW-A-KQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGG-GSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-H-HHTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-H-HHHHHHH
Confidence 3567788999999999999999888754310 1122 34466778877663 3344444444444331 0 0111222
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHhCCCC---CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCc
Q 042098 453 ------SCMVDLYARAGHLSEAWDFVERMPEK---VD-----EIVLGALLGACQKQKNTDVSQRVMQLLLEIE---SSNS 515 (566)
Q Consensus 453 ------~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~ 515 (566)
..++..|...|++.+|.+++.++... .| ...+..-+..|...++...+..++..+.... +.+|
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 36889999999999999988877542 22 2334445578889999999999999997652 2333
Q ss_pred h----hHHHHHHHHH-hCCChHHHHHHHHHHH
Q 042098 516 G----NYVISSKIFA-NLKMWDDSAKMRALMR 542 (566)
Q Consensus 516 ~----~~~~l~~~~~-~~g~~~~A~~~~~~~~ 542 (566)
. ....-+..+. ..++|.+|...|-+..
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 3 3334566777 8999999999877654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.90 E-value=1.9 Score=34.58 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-------HHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPN-------DVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
+-.-+..+...|.++.|+-+.+.+..... ..|+ ..++..+.+++...|++.+|...|++....
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~-~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSN-NNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhc-CCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 44456777888999999888777543210 1233 235677788899999999999999986543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.60 E-value=0.99 Score=34.61 Aligned_cols=74 Identities=12% Similarity=0.031 Sum_probs=45.7
Q ss_pred CCChhHHHHHHHHHHhcCCH---HHHHHHHHhCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 042098 446 IPKSEHYSCMVDLYARAGHL---SEAWDFVERMPEK-V--DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519 (566)
Q Consensus 446 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (566)
.|+..+--.+..++.+.... .+++.+++++... | ....+-.|.-++.+.|++++|.+..+.+++.+|.|..+-.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 34555555566666666644 3566666655432 3 2333444556777778888888888888888887765444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.33 E-value=5.4 Score=38.55 Aligned_cols=166 Identities=10% Similarity=0.098 Sum_probs=107.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh----hhCcHH--HHHHHHHHhHHhc--CCC
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV----HAGLVD--EGRRLFDLMSSSF--GLI 446 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~----~~g~~~--~A~~~~~~~~~~~--~~~ 446 (566)
.......++..|...|+++...+.+.-+.+..+ ..+ .....+++.+. .....+ .-..+.+...... .+.
T Consensus 55 ~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~-qlk--~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kif 131 (445)
T 4b4t_P 55 SKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG-QLK--LSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIF 131 (445)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT-TSH--HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh-hhH--HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchH
Confidence 456788899999999999999888877665431 222 22333443332 222222 2222222211100 111
Q ss_pred C---ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CC
Q 042098 447 P---KSEHYSCMVDLYARAGHLSEAWDFVERMPEK--------VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI---ES 512 (566)
Q Consensus 447 p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p 512 (566)
. .......|...|...|++.+|.+++..+... --...+...++.|...+|+..|..+++++... .+
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 1 1234467889999999999999999887431 12345666779999999999999999998532 23
Q ss_pred CCc----hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 513 SNS----GNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 513 ~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.++ ..+...+..+...++|.+|-+.|.++.+
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 332 4667888999999999999998877753
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.40 E-value=4.2 Score=29.32 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
+.-++.+-++.+.... .-|++......+++|.+.+++..|.++|+.++.+.| +...+|..++.-
T Consensus 25 D~~e~rrglN~l~~~D--lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYD--LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSS--BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccc--cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4556777788888888 899999999999999999999999999998887633 335567776653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.01 E-value=13 Score=33.67 Aligned_cols=167 Identities=11% Similarity=0.044 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHH----HHHhHHCCCCCCHHHHHHHHHHhc
Q 042098 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVEL----FGRMREEEFLPDEITLVSVLGSCG 231 (566)
Q Consensus 156 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~~~ 231 (566)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455677778888999999988643 23456667887766664 455567788889888888887776
Q ss_pred CCCCch-hHHHHHHHHHH----hCC--CchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHc---CC
Q 042098 232 DLGDLV-LGKWVEGFVVK----NKM--DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN---GL 301 (566)
Q Consensus 232 ~~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~ 301 (566)
.-..-+ .-..+...+++ .|- .-+......+...|.+.|++.+|+..|-.-...+...+..++.-+.+. |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533222 22344444443 322 235667788899999999999999888633322455666555555444 44
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHH
Q 042098 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348 (566)
Q Consensus 302 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 348 (566)
..++--.+- ..++ -+...|++..|..++....
T Consensus 184 ~~e~dlf~~--------------RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAEFFS--------------RLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHH--------------HHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cchHHHHHH--------------HHHH-HHHHhcCHHHHHHHHHHHH
Confidence 443321111 1222 2345567777766665543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.50 E-value=3.7 Score=38.91 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHH----hcCCCCChhHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS----SFGLIPKSEHY 452 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~ 452 (566)
+...++..+...|++++|...+..+.... +-+...+..++.++...|+..+|.+.|+.+.+ ..|+.|...+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 45667788889999999999999998764 56788999999999999999999999988755 35889987653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.08 E-value=8.3 Score=30.35 Aligned_cols=58 Identities=12% Similarity=-0.072 Sum_probs=38.5
Q ss_pred CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHH
Q 042098 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257 (566)
Q Consensus 199 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 257 (566)
+++++|.++|+.+++.+-.- ...+..-...-.+.|++..|.+++...+..++.|....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 67777888887776542222 44454445555678888888888888888777765443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.76 E-value=24 Score=38.95 Aligned_cols=191 Identities=9% Similarity=0.022 Sum_probs=103.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------HCC--C
Q 042098 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK--------------------YAG--V 317 (566)
Q Consensus 260 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~--------------------~~g--~ 317 (566)
.++..+...+..+.+.++..-..+ ++..--.+..++...|++++|.+.|.+.. ... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 344455555555555554443333 33333344455666666666666665431 000 0
Q ss_pred CCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHH
Q 042098 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397 (566)
Q Consensus 318 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 397 (566)
..-..-|..++..+.+.+.++.+.++-....+.....+ .+ .....|..+...+...|++++|..
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~-----~~-----------~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD-----ED-----------LSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCC-----HH-----------HHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCC-----hh-----------hHHHHHHHHHHHHHhhCCHHHHHH
Confidence 11234577777888888888888777666665432211 00 012257788888888899999988
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcH------------HHHHHHHHHhHHhc-CCCCChhHHHHHHHHHHhcCC
Q 042098 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLV------------DEGRRLFDLMSSSF-GLIPKSEHYSCMVDLYARAGH 464 (566)
Q Consensus 398 ~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~------------~~A~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~ 464 (566)
.+-.+.... --...+..|+..+|..|.. ++..+++..-.+.. .....+.-|..|-.-+...|+
T Consensus 960 aL~~~pd~~----~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~d 1035 (1139)
T 4fhn_B 960 ALMVLSTTP----LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQN 1035 (1139)
T ss_dssp HHHHHHHSS----SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHH----HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCC
Confidence 888776643 3455667777766665543 34444443322210 111112345555555566666
Q ss_pred HHHHHHH
Q 042098 465 LSEAWDF 471 (566)
Q Consensus 465 ~~~A~~~ 471 (566)
+..|-.+
T Consensus 1036 yR~AA~v 1042 (1139)
T 4fhn_B 1036 YRDAAAI 1042 (1139)
T ss_dssp TSCHHHH
T ss_pred hHHHHHH
Confidence 6655443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.43 E-value=17 Score=33.18 Aligned_cols=134 Identities=11% Similarity=0.040 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHH----HHhHHCCCCCCHHHHHHHHHHhc
Q 042098 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF----GRMREEEFLPDEITLVSVLGSCG 231 (566)
Q Consensus 156 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~t~~~ll~~~~ 231 (566)
+|.++..-|.+.+++++|.+++.. -...+.+.|+...+-++- +-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345667778889999999987533 234566677776665554 55566788888888888887776
Q ss_pred CCCCch-hHHHHHHH----HHHhC--CCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 042098 232 DLGDLV-LGKWVEGF----VVKNK--MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300 (566)
Q Consensus 232 ~~~~~~-~a~~~~~~----~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 300 (566)
....-+ .-..+... ..+.| ..-+......+...|.+.+++.+|+..|---..+.+..+..++.-+.+.+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 655322 12223333 33333 23355666788889999999999998885333333356655555444444
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.85 E-value=0.92 Score=39.74 Aligned_cols=52 Identities=0% Similarity=-0.078 Sum_probs=25.6
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.+.|+++.|+......++.+|.|...-..|...++-.|+|+.|.+-++.+.+
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555544444433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.84 E-value=26 Score=38.68 Aligned_cols=170 Identities=12% Similarity=0.015 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHcc
Q 042098 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFED 370 (566)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 370 (566)
.++..+.+.+..+-+.++..-. +-+...--.+-.++...|++++|...|......-...+...........+...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3455566666666655543321 22333323334456777888888777765432111111111222222222221
Q ss_pred CC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCC
Q 042098 371 MP--VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND--VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446 (566)
Q Consensus 371 ~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (566)
.. ..-..-|.-++..+-+.+.++.+.++-+..++....-.++. ..|..+++++...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 11 11234577788888888999998888777665431011211 24677888888999999998888766543 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHH
Q 042098 447 PKSEHYSCMVDLYARAGHLSEA 468 (566)
Q Consensus 447 p~~~~~~~l~~~~~~~g~~~~A 468 (566)
--......|+..++..|..++-
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhh
Confidence 2356777788777777765543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.44 E-value=12 Score=32.69 Aligned_cols=120 Identities=12% Similarity=0.099 Sum_probs=72.9
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHH
Q 042098 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS----EHYSCMVDLY 459 (566)
Q Consensus 384 ~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~ 459 (566)
..+.+.|++++|+..+..-++.. +-|...-..|+..+|-.|++++|..-++...+. .|+. ..|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~---P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH-
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH-
Confidence 34557788888888888777764 456666677888888888888888888777654 5553 234444433
Q ss_pred HhcCCHHHHH-HHHHhCCCC----CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCch
Q 042098 460 ARAGHLSEAW-DFVERMPEK----VDEIVLGALLGACQ--KQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 460 ~~~g~~~~A~-~~~~~~~~~----~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
+... ++|..-... ....-...++.+.. ..|+.+.|.++-.++.+.-|..+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 122211110 12223334444433 458888888888888877666544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=85.71 E-value=40 Score=35.78 Aligned_cols=124 Identities=14% Similarity=-0.018 Sum_probs=68.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH--HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI--GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~--~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
++.-++...|+.+.+..+++.+.... .|....-. .+.-+|+..|+.....+++..+... ...++.-...+.-+
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~~---dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLG 603 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLASD---ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALG 603 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHH
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHH
Confidence 33344456788888888888887632 23332222 2334567788887777788877753 22334333444445
Q ss_pred HHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 042098 459 YARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNT-DVSQRVMQLLLE 509 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~ 509 (566)
+.-.|+.+.+.++++.+... |....-..+.-+....|.. .++...+..+..
T Consensus 604 lI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 604 FVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred hhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 55567766667777655443 3333333333333333332 556666666653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.25 E-value=6.9 Score=30.45 Aligned_cols=65 Identities=6% Similarity=-0.076 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCC-CchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 479 VDEIVLGALLGACQKQKN---TDVSQRVMQLLLEIESS-NSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
|+..+--.+..++.++.+ ..+++.+++.+.+..|. .......|+.++.+.|+|++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444432 23445555555554442 233444455555555555555555554443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.96 E-value=23 Score=32.34 Aligned_cols=130 Identities=13% Similarity=0.088 Sum_probs=80.0
Q ss_pred HHHHhhcCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHH----HHHHHHCCCCCCcccHHHHHHHHHccC
Q 042098 58 LLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKL----YYQMKRLGLKPDNFTYPFVFISCANLL 133 (566)
Q Consensus 58 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~ 133 (566)
+++.+++.+++++|++++-+- ...+.+. |+..-+.++ ++...+.++++|......++..+....
T Consensus 41 i~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~-~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILASV-----------SQTLLRS-GQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----------HHHHHHT-TCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHhhcCHHHHHHHHHHH-----------HHHHHHC-CCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 355567888888888886442 2345566 666655554 455667788888888888888776654
Q ss_pred Chh-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcC
Q 042098 134 ALN-HGVSVHSSVF----KIG--LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199 (566)
Q Consensus 134 ~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 199 (566)
.-+ .-..+.+.++ +.| ..-|+.....+...|.+.+++.+|+.-|-.-..+++..+..++.-+...+
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 322 2233333333 333 34567777888888888888888887774322223356655554444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=84.84 E-value=44 Score=35.49 Aligned_cols=106 Identities=16% Similarity=0.038 Sum_probs=64.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 042098 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461 (566)
Q Consensus 382 li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 461 (566)
+.-+|+..|+.....++++.+.... ..+......+.-++...|+.+.+.++++.+.+. ..|.+..-..+.-+...
T Consensus 566 lglAyaGTGn~~aIq~LL~~~~~d~---~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 566 IALAYAGTGNNSAVKRLLHVAVSDS---NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIAC 640 (963)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHhccCC---cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhc
Confidence 4456778899888888999887642 233444444444555567766677777655543 34555444455555555
Q ss_pred cCCH-HHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042098 462 AGHL-SEAWDFVERMPEKVDEIVLGALLGACQ 492 (566)
Q Consensus 462 ~g~~-~~A~~~~~~~~~~~~~~~~~~l~~~~~ 492 (566)
.|.. .+|++++..+...++..+-..-+.++.
T Consensus 641 aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 641 AGKGLQSAIDVLDPLTKDPVDFVRQAAMIALS 672 (963)
T ss_dssp SSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 5553 678888888876666555444433333
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.71 E-value=9.2 Score=29.27 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
|.-+..+-++.+...+ +-|++......+++|.+.+|+..|.++|+-++.+. .+...+|..++.-
T Consensus 68 D~wElrrglN~l~~~D--lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYD--LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSS--BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccc--cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 4456677778887777 89999999999999999999999999999888763 3445567776653
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.30 E-value=12 Score=31.07 Aligned_cols=46 Identities=11% Similarity=-0.014 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 465 LSEAWDFVERMPEK----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 465 ~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
..++.++|..|..+ .-...|......+...|++.+|.++|+..++.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44455555444321 23444444555555555555555555555554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.87 E-value=11 Score=27.03 Aligned_cols=86 Identities=9% Similarity=-0.001 Sum_probs=58.8
Q ss_pred chhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
.++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555444444443 22222333456778899999999999999999999987754 5788889888888888777
Q ss_pred CCCCCHhHHHH
Q 042098 316 GVNPDKITLIG 326 (566)
Q Consensus 316 g~~p~~~~~~~ 326 (566)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 454444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.50 E-value=11 Score=26.95 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=60.4
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 042098 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM 211 (566)
Q Consensus 132 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 211 (566)
....++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++...+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3467788888888877653 33333344556778999999999999999999999988754 4778888888888777
Q ss_pred HHCC
Q 042098 212 REEE 215 (566)
Q Consensus 212 ~~~~ 215 (566)
...|
T Consensus 95 a~sg 98 (115)
T 2uwj_G 95 GGSS 98 (115)
T ss_dssp HTCS
T ss_pred HhCC
Confidence 7664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.28 E-value=12 Score=27.04 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=42.0
Q ss_pred CHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 042098 464 HLSEAWDFVERMPE---KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522 (566)
Q Consensus 464 ~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (566)
+.-+..+-++.+.. -|++....+.+++|.+.+|+..|.++++-+...-.+...+|-.++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 34445555555443 388999999999999999999999999988766444455566553
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.17 E-value=12 Score=26.92 Aligned_cols=86 Identities=13% Similarity=0.114 Sum_probs=58.1
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042098 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314 (566)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (566)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34455555444444443 22222333456778899999999999999999999987754 477888888888878877
Q ss_pred CCCCCCHhHHH
Q 042098 315 AGVNPDKITLI 325 (566)
Q Consensus 315 ~g~~p~~~~~~ 325 (566)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444444
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.01 E-value=12 Score=26.89 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=59.5
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 042098 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM 211 (566)
Q Consensus 132 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 211 (566)
....++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|... +.|..+++...+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3467788888888877653 333333444567789999999999999999999999887544 668778887777777
Q ss_pred HHCC
Q 042098 212 REEE 215 (566)
Q Consensus 212 ~~~~ 215 (566)
...|
T Consensus 96 a~sg 99 (116)
T 2p58_C 96 ARSQ 99 (116)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 6654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.93 E-value=49 Score=34.20 Aligned_cols=54 Identities=11% Similarity=0.003 Sum_probs=46.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHh
Q 042098 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439 (566)
Q Consensus 383 i~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 439 (566)
...+...|+++-|+.+-++.... .+-+-.||..|...|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44567789999999999999885 2345789999999999999999999999887
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=81.36 E-value=48 Score=33.43 Aligned_cols=143 Identities=13% Similarity=0.114 Sum_probs=79.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 042098 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461 (566)
Q Consensus 382 li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 461 (566)
.+....+.|+++.|...|+.|.... .......--+.+++...|+.++|..+|+.+... . ..|..+. ..+
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~---~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~-----~-~fYg~lA--a~~ 359 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEA---KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-----R-GFYPMVA--AQR 359 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTG---GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----C-SHHHHHH--HHH
T ss_pred HHHHHHHCCCHHHHHHHHHHccccc---cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----C-ChHHHHH--HHH
Confidence 3344456789999999998886532 223444445566777889999999998887631 1 2343332 223
Q ss_pred cCCHHHHHHHHHhCCCCC-CH-H--HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHH
Q 042098 462 AGHLSEAWDFVERMPEKV-DE-I--VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537 (566)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~-~~-~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (566)
.|..-.. .. ....... .. . .-..-+..+...|....|...+..+.+.. ++.-...++......|.++.+...
T Consensus 360 Lg~~~~~-~~-~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~ 435 (618)
T 1qsa_A 360 IGEEYEL-KI-DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQA 435 (618)
T ss_dssp TTCCCCC-CC-CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCCCC-CC-CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHH
Confidence 3321000 00 0000000 00 0 11122345667888888888888776532 234445666667777777776654
Q ss_pred HH
Q 042098 538 RA 539 (566)
Q Consensus 538 ~~ 539 (566)
..
T Consensus 436 ~~ 437 (618)
T 1qsa_A 436 TI 437 (618)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 566 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.08 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.0 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.0 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.98 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.93 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.9 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.78 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.68 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.65 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.59 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.57 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.55 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.52 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.5 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.5 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.44 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.43 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.43 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.41 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.24 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.21 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.19 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.19 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.15 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.12 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.11 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.08 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.02 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.02 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.0 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.95 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.83 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.79 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.68 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.61 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.58 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.56 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.5 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.48 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.44 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.44 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.34 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.34 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.29 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.22 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.1 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.36 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.72 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.35 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.26 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.96 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.05 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.83 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 85.7 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.9e-20 Score=179.16 Aligned_cols=372 Identities=12% Similarity=0.087 Sum_probs=234.8
Q ss_pred HHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 042098 93 LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172 (566)
Q Consensus 93 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 172 (566)
+.+. |++++|++.|+++.+.. +-+...+..+...+.+.|++++|...++..++.. +.+..++..+...|.+.|++++
T Consensus 9 ~~~~-G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 9 EYQA-GDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 3344 55555555555555432 1133444444455555555555555555555442 1233344444444444555555
Q ss_pred HHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 042098 173 ARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249 (566)
Q Consensus 173 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 249 (566)
|+..+....+ .+...+..........+....+....... ...
T Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~ 130 (388)
T d1w3ba_ 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA-----------------------------------LQY 130 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH-----------------------------------HHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-----------------------------------ccc
Confidence 5444444332 12222222222333333333333333322 222
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 042098 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326 (566)
Q Consensus 250 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 326 (566)
.... ..............+....+...+..... .+...+..+...+...|++++|...+++..+.. +-+...+..
T Consensus 131 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (388)
T d1w3ba_ 131 NPDL-YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYIN 208 (388)
T ss_dssp CTTC-THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccc-ccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 2221 11122233334444455555444444311 234455556666666677777777776665532 123345556
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 042098 327 VLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406 (566)
Q Consensus 327 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 406 (566)
+...+...|++++|...+........ .+...+..+...+.+.|++++|+..|++..+..
T Consensus 209 l~~~~~~~~~~~~A~~~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 267 (388)
T d1w3ba_ 209 LGNVLKEARIFDRAVAAYLRALSLSP---------------------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HhhhhhccccHHHHHHHHHHhHHHhh---------------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 66666667777766666665555432 245677888899999999999999999998864
Q ss_pred CCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHH
Q 042098 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVL 484 (566)
Q Consensus 407 ~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~ 484 (566)
+-+..++..+...+...|++++|.+.++..... .+.+...+..+...+.+.|++++|++.|++..+. | +..++
T Consensus 268 ---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 342 (388)
T d1w3ba_ 268 ---PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342 (388)
T ss_dssp ---SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 345678888999999999999999999988765 2445678889999999999999999999997653 4 56778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCC
Q 042098 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (566)
..+..++.+.|++++|...|+++++++|+++.+|..++.+|.+.||
T Consensus 343 ~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 343 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 8899999999999999999999999999999999999999999886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.2e-19 Score=172.86 Aligned_cols=356 Identities=12% Similarity=0.030 Sum_probs=255.6
Q ss_pred HHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChh
Q 042098 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAK 202 (566)
Q Consensus 126 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 202 (566)
...+.+.|++++|.+.++++.+.. +-++..+..+...|.+.|++++|...|+...+ .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 344556667777777776666653 22445556666666666666666666665542 23445566666666666666
Q ss_pred HHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC-
Q 042098 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM- 281 (566)
Q Consensus 203 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 281 (566)
+|+..+...... ........ ..........+....+.......
T Consensus 85 ~A~~~~~~~~~~-----------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
T d1w3ba_ 85 EAIEHYRHALRL-----------------------------------KPDFIDGY-INLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHHH-----------------------------------CTTCHHHH-HHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred cccccccccccc-----------------------------------cccccccc-cccccccccccccccccccccccc
Confidence 666666655443 22211111 11222222222222222222221
Q ss_pred --CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccC
Q 042098 282 --VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG 359 (566)
Q Consensus 282 --~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 359 (566)
..................+....+...+....... +-+...+..+...+...|+.+.|...+....+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------- 200 (388)
T d1w3ba_ 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP------- 200 (388)
T ss_dssp HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-------
T ss_pred ccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-------
Confidence 23344455556666777888888888888877653 22445666777778888888888888777666432
Q ss_pred CHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHh
Q 042098 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439 (566)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 439 (566)
.+..+|..+...+...|++++|...+++....+ +.+...+..+...+...|++++|...|++.
T Consensus 201 --------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 263 (388)
T d1w3ba_ 201 --------------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS---PNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp --------------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh---hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 257789999999999999999999999998864 456778888899999999999999999998
Q ss_pred HHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 440 SSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 440 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
.+. .|+ ..++..+...+...|++++|++.++.... +.+...+..+...+...|++++|+..++++++..|+++.
T Consensus 264 l~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 340 (388)
T d1w3ba_ 264 IEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340 (388)
T ss_dssp HHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred HHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 864 555 67889999999999999999999988754 356778888899999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 517 NYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
++..++.+|...|++++|.+.++++.+..+
T Consensus 341 ~~~~la~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 341 AHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999987643
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.1e-13 Score=127.04 Aligned_cols=166 Identities=11% Similarity=0.031 Sum_probs=119.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH----------------HHHHHHHHHHhhhCcHHHHHHHHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND----------------VTFIGVLSACVHAGLVDEGRRLFDL 438 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~----------------~t~~~ll~~~~~~g~~~~A~~~~~~ 438 (566)
+...|..+...|...|++++|.+.+++..... |+. ......+..+...+...+|...++.
T Consensus 86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 86 NQTALMALAVSFTNESLQRQACEILRDWLRYT----PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHhc----cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 44556666677777777777777777766532 221 0111122334455677788888877
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 439 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
..+...-.++..++..+...+...|++++|+..+++... +.+...|..+...+...|++++|.+.++++++.+|.++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 765522233456777888888888999999988888653 235677888888888999999999999999998899888
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 517 NYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
++..++.+|.+.|++++|++.++++.+.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999998888763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3.8e-13 Score=125.29 Aligned_cols=149 Identities=14% Similarity=-0.001 Sum_probs=116.9
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC
Q 042098 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAG 463 (566)
Q Consensus 385 ~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 463 (566)
.+...+.+.+|...+.+..+..+ ..++...+..+...+...|++++|...++..... .|+ ...|..+..+|.+.|
T Consensus 145 ~~~~~~~~~~a~~~~~~al~~~p-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g 220 (323)
T d1fcha_ 145 SLLSDSLFLEVKELFLAAVRLDP-TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGN 220 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHST-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHHHhh-cccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccc
Confidence 34455667888888888776541 2346677888888899999999999999998865 455 678889999999999
Q ss_pred CHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-----------hHHHHHHHHHhCCC
Q 042098 464 HLSEAWDFVERMPE-K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG-----------NYVISSKIFANLKM 530 (566)
Q Consensus 464 ~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~ 530 (566)
++++|++.|++..+ . .+...|..+..+|.+.|++++|+..|++++++.|.+.. .+..+..++...|+
T Consensus 221 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~ 300 (323)
T d1fcha_ 221 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 300 (323)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCC
Confidence 99999999998764 2 45778889999999999999999999999998887654 34556677777777
Q ss_pred hHHHHHH
Q 042098 531 WDDSAKM 537 (566)
Q Consensus 531 ~~~A~~~ 537 (566)
.+.+...
T Consensus 301 ~d~~~~~ 307 (323)
T d1fcha_ 301 SDAYGAA 307 (323)
T ss_dssp GGGHHHH
T ss_pred HHHHHHH
Confidence 7655443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=3.3e-09 Score=99.21 Aligned_cols=265 Identities=12% Similarity=0.032 Sum_probs=174.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--CC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HhHHHHHH
Q 042098 262 IDMYGKCGALVPARRVFDAMVN--KD------VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV-NPD----KITLIGVL 328 (566)
Q Consensus 262 i~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll 328 (566)
...+...|++++|.+++++..+ |+ ...++.+...+...|++++|+..|++..+... .++ ...+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4445566666666666655411 11 12455556666777777777777776644210 011 12333344
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042098 329 SACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVT----NEVSWNAMISALAFNGRAHEALLLFERMSK 404 (566)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 404 (566)
..+...|++..+...+..... +......+ ....+..+...+...|+++.+...+.....
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~-----------------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~ 161 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQ-----------------LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 161 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-----------------HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 455666666666655544332 11111101 123566677888999999999999988876
Q ss_pred CCCC--CCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 042098 405 EGGA--ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-----SEHYSCMVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 405 ~g~~--~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
.... ......++......+...++...+...+........-..+ ...+..+...+...|++++|...+++...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 241 (366)
T d1hz4a_ 162 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 241 (366)
T ss_dssp HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4310 2233455666667788889999998888776654222222 23456677788899999999999998765
Q ss_pred C------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 478 K------VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI------ESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 478 ~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
. .....+..+..++...|++++|...+++++.. .|....++..++.+|...|++++|.+.+++..+
T Consensus 242 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 242 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3 22345666788999999999999999999854 255567888999999999999999999998765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=4.7e-08 Score=91.12 Aligned_cols=160 Identities=11% Similarity=0.001 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC----HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC--hh
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN----DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK--SE 450 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~ 450 (566)
..+......+...++...+...+.+........... ...+..+...+...|+.+.|...++.......-.+. ..
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 345556667778888888888877654421001111 233455566778889999999999877643111111 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---------
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE-------KV-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS--------- 513 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--------- 513 (566)
.+..+..++...|++++|.+.+++... .| ....+..+...+...|++++|.+.+++++++.+.
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~ 332 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 332 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHH
Confidence 556678889999999999999887642 12 2456777788999999999999999999886432
Q ss_pred CchhHHHHHHHHHhCCChHHHHH
Q 042098 514 NSGNYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 514 ~~~~~~~l~~~~~~~g~~~~A~~ 536 (566)
....+..+...+...++.+++.+
T Consensus 333 ~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 333 EGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp THHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHH
Confidence 12334455666777788777765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.00 E-value=6.4e-08 Score=88.27 Aligned_cols=166 Identities=11% Similarity=0.039 Sum_probs=134.8
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHH
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHY 452 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~ 452 (566)
.+...|...+..+.+.|+++.|..+|+++.+.. .......|...+..+.+.|+.+.|.++|+.+.+. .|+ ...|
T Consensus 97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~--~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~---~~~~~~~~ 171 (308)
T d2onda1 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVY 171 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHH
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCcHHHH
Confidence 456678888999999999999999999998754 2223457888899999999999999999998854 343 4455
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc----hhHHHHHHHH
Q 042098 453 SCMVDL-YARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS----GNYVISSKIF 525 (566)
Q Consensus 453 ~~l~~~-~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~ 525 (566)
...... +...|+.+.|..+|+.+... .+...|...+..+...|+.+.|..+|+++++..|.++ ..|..++...
T Consensus 172 ~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE 251 (308)
T d2onda1 172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 444443 34468999999999998764 4577899999999999999999999999999876554 3788888888
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 042098 526 ANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 526 ~~~g~~~~A~~~~~~~~~~ 544 (566)
...|+.+.+.++.+++.+.
T Consensus 252 ~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 252 SNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHSCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8999999999999988764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.4e-08 Score=92.87 Aligned_cols=224 Identities=10% Similarity=0.046 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH---HHHhccC-ChhHHHHHHHHHHHhCCCCccccCCHH
Q 042098 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL---SACASIG-ALDLGKWVDKYASQRGLRHDIFCGSID 362 (566)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 362 (566)
..++.+...+.+.+.+++|+++++++.+. ++..+.+.. .++...| ++++|...++.+.+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l----nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~----------- 108 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL----NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ----------- 108 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-----------
Confidence 35666667777888888888888888774 333443321 1222222 2333333333333322
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
+.+..+|+.+...+.+.|++++|+..++++.+.. +-+...|..+...+...|++++|++.++.+.+.
T Consensus 109 ----------p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d---p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 109 ----------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ----------HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh---hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2245556666666666666666666666665542 234555555666666666666666666666543
Q ss_pred cCCCCC-hhHHHHHHHHHHhcCC------HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 443 FGLIPK-SEHYSCMVDLYARAGH------LSEAWDFVERMPE-KV-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 443 ~~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
.|+ ...|+.+..++.+.+. +++|++.+.+... .| +...|..+...+.. ...+++.+.++.+.++.|.
T Consensus 176 ---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~ 251 (315)
T d2h6fa1 176 ---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPS 251 (315)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTT
T ss_pred ---CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCC
Confidence 333 4445544444444443 3455555544432 12 34444444443333 2245555555555555543
Q ss_pred C--chhHHHHHHHHHhC--CChHHHHHHHHHHH
Q 042098 514 N--SGNYVISSKIFANL--KMWDDSAKMRALMR 542 (566)
Q Consensus 514 ~--~~~~~~l~~~~~~~--g~~~~A~~~~~~~~ 542 (566)
. +..+..++.+|... ++.+.+...+++..
T Consensus 252 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~ 284 (315)
T d2h6fa1 252 HSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL 284 (315)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2 22333444444332 44445555555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=2.8e-08 Score=90.85 Aligned_cols=225 Identities=7% Similarity=0.012 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042098 255 FYMGSALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNG-LSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330 (566)
Q Consensus 255 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 330 (566)
...++.+...+.+.+..++|+++++++.+ | +...|+....++...| ++++|+..++...+.. +-+..+|......
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 44677788889999999999999999854 3 5568888888888876 5999999999998753 2356778888888
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 042098 331 CASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410 (566)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~ 410 (566)
+...|++++|...+..+.+... .+..+|..+...+...|++++|+..++++++.+ +
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp---------------------~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~---p 177 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDA---------------------KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---V 177 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---T
T ss_pred HHhhccHHHHHHHHhhhhhhhh---------------------cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC---C
Confidence 8999999999988888887543 378899999999999999999999999999865 3
Q ss_pred CCHHHHHHHHHHHhhhC------cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC
Q 042098 411 PNDVTFIGVLSACVHAG------LVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE----KV 479 (566)
Q Consensus 411 p~~~t~~~ll~~~~~~g------~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 479 (566)
-+...|+.+...+...+ .+++|...+....+. .|+ ...|..+...+... ..+++.+.++.... ..
T Consensus 178 ~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~---~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~ 253 (315)
T d2h6fa1 178 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHS 253 (315)
T ss_dssp TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCC
T ss_pred ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh---CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcC
Confidence 45667776655554443 478899998888765 565 66666666655443 45666666554432 13
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 042098 480 DEIVLGALLGACQKQ--KNTDVSQRVMQLLL 508 (566)
Q Consensus 480 ~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~ 508 (566)
+...+..++..+... ++.+.+...++++.
T Consensus 254 ~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~ 284 (315)
T d2h6fa1 254 SPYLIAFLVDIYEDMLENQCDNKEDILNKAL 284 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344455555544332 33334444444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=7.7e-09 Score=91.96 Aligned_cols=203 Identities=10% Similarity=-0.081 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHH
Q 042098 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALK 366 (566)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~ 366 (566)
.+|..+...|.+.|++++|+..|++..+.. +-+..++..+-.++...|++++|...++.+.+....
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------- 103 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT------------- 103 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-------------
Confidence 356667778888888888888888887742 224456666666667776666666666666554322
Q ss_pred HHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCC
Q 042098 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446 (566)
Q Consensus 367 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (566)
+..++..+..+|...|++++|...+++..+.. +.+......+..++.+.+..+.+..+....... .
T Consensus 104 --------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 169 (259)
T d1xnfa_ 104 --------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---D 169 (259)
T ss_dssp --------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---C
T ss_pred --------hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc---cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---c
Confidence 34566666777777777777777777776643 223333333333444444444444444433322 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHH-HhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 042098 447 PKSEHYSCMVDLYARAGHLSEAWDFV-ERMPEK----V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518 (566)
Q Consensus 447 p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (566)
++...+. ++..+............. ...... | ...+|..+...+...|++++|...|++++..+|++...|
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 2222221 222222111111111111 111110 1 123455566666677777777777777777666665443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=1.7e-07 Score=82.91 Aligned_cols=196 Identities=10% Similarity=-0.052 Sum_probs=108.9
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 042098 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402 (566)
Q Consensus 323 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 402 (566)
++..+-.++.+.|++++|...++...+.... +..+|+.+..+|.+.|++++|+..|++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~---------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a 97 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD---------------------MPEVFNYLGIYLTQAGNFDAAYEAFDSV 97 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC---------------------CHHHHhhhchHHHHHHHHHHhhhhhhHH
Confidence 4444455667777777777777777664322 5666777777777777777777777777
Q ss_pred HhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC
Q 042098 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD 480 (566)
Q Consensus 403 ~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 480 (566)
.+.. +-+..++..+...+...|++++|...|+...+. .|+ ......+...+.+.+..+.+..+....... +.
T Consensus 98 l~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 98 LELD---PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHC---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred HHHH---hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 7643 223456666666777777777777777777654 333 333333334444444444333333222111 11
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 481 EIVLGALLGACQK----QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 481 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
...+. ++..+.. .+..+.+...+.......|....++..++.+|...|++++|.+.+++.....+
T Consensus 172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 172 QWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 11111 1111111 12233333333333444455556677777777777777777777777765543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=3.8e-09 Score=98.03 Aligned_cols=227 Identities=9% Similarity=-0.030 Sum_probs=150.7
Q ss_pred hcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHhccCChhHH
Q 042098 267 KCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNG--LSNEAIMLFNRMKYAGVNPDKITLIGVL-SACASIGALDLG 340 (566)
Q Consensus 267 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a 340 (566)
..|.+++|+.+++...+ .+...|..+..++...+ ++++|+..+.++.+... ++...+.... ..+...+.
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~---- 159 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVA---- 159 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCC----
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccc----
Confidence 34456667777766633 24556666666666554 47788888888777532 2233333222 33334443
Q ss_pred HHHHHHHHHhCCCCccccCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH
Q 042098 341 KWVDKYASQRGLRHDIFCGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417 (566)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~ 417 (566)
.++|...++... +.+..+|+.+..++.+.|++++|...+++..+. .|+..
T Consensus 160 --------------------~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~--- 212 (334)
T d1dcea1 160 --------------------PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV----LLKEL--- 212 (334)
T ss_dssp --------------------HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH----HHHHH---
T ss_pred --------------------cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh----HHHHH---
Confidence 444444444443 346778888888999999988887666554442 23222
Q ss_pred HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcC
Q 042098 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQKQK 495 (566)
Q Consensus 418 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~ 495 (566)
.+...+...+..+++...+...... -.++...+..+...+...|++++|...+.+.... | +...|..+..++...|
T Consensus 213 ~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 290 (334)
T d1dcea1 213 ELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 290 (334)
T ss_dssp HHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGG
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCC
Confidence 2233345556666777777766643 2334556667778888889999999999887754 3 4567777889999999
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 042098 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527 (566)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (566)
+.++|.+.++++++.+|.+...|..|...+.-
T Consensus 291 ~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 291 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 99999999999999999988888888777664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=2.5e-07 Score=84.26 Aligned_cols=184 Identities=9% Similarity=0.028 Sum_probs=93.6
Q ss_pred chhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C-hhHHHHHHHHHHHcCCHHHHHHHHHH
Q 042098 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN--K-D-VVTWNAMITAYAQNGLSNEAIMLFNR 311 (566)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~~~~~~a~~~~~~ 311 (566)
.+.+..+++..++..++.+...+...+..+.+.|+++.|..+|+.+.+ | + ...|...+..+.+.|+.++|.++|+.
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 345556666655544444455566666666677777777777766533 1 2 23566666666667777777777777
Q ss_pred HHHCCCCCCHhHHHHHHH-HHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcC
Q 042098 312 MKYAGVNPDKITLIGVLS-ACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390 (566)
Q Consensus 312 m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 390 (566)
+.+.+... ...|..... -+...|+.+.|..+++.+.+.. +.+...|...+..+.+.|
T Consensus 160 al~~~~~~-~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~---------------------p~~~~~w~~y~~~~~~~g 217 (308)
T d2onda1 160 AREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---------------------GDIPEYVLAYIDYLSHLN 217 (308)
T ss_dssp HHTSTTCC-THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---------------------TTCHHHHHHHHHHHHTTC
T ss_pred HHHhCCCc-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh---------------------hhhHHHHHHHHHHHHHcC
Confidence 66543221 112211111 1222344444444444443321 123445555555555555
Q ss_pred ChHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 391 RAHEALLLFERMSKEGGAARPN--DVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
+++.|..+|++.....+ ..|+ ...|...+.--...|+.+.+..+++++.+.
T Consensus 218 ~~~~aR~~fe~ai~~~~-~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 218 EDNNTRVLFERVLTSGS-LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CHHHHHHHHHHHHHSSS-SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555555555544321 1221 234444444444555555555555555444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.78 E-value=4.1e-09 Score=97.79 Aligned_cols=167 Identities=9% Similarity=-0.083 Sum_probs=119.4
Q ss_pred CChhHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCCCCCCHHHHHH-HHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-h
Q 042098 374 TNEVSWNAMISALAFNGR--AHEALLLFERMSKEGGAARPNDVTFIG-VLSACVHAGLVDEGRRLFDLMSSSFGLIPK-S 449 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~~~p~~~t~~~-ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~ 449 (566)
.+...|..+..++...++ +++|...++++.+.. +++...+.. ....+...+..+.|...++.+.+. .|+ .
T Consensus 105 k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~---~p~~~ 178 (334)
T d1dcea1 105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNY 178 (334)
T ss_dssp TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCH
T ss_pred CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC---chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc---CCCCH
Confidence 466677777777666554 788888888888754 344555443 345566678888888888877754 454 6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--------------------------------CCCHHHHHHHHHHHHhcCCH
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE--------------------------------KVDEIVLGALLGACQKQKNT 497 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~~~~~~ 497 (566)
..|..+..++.+.|++++|...++.... .+....+..+...+...|+.
T Consensus 179 ~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 258 (334)
T d1dcea1 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSE 258 (334)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhH
Confidence 6777778888887776544322221110 12222333445566777899
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 498 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
++|...+.+....+|.+..++..++.+|...|++++|.+.++++.+.++
T Consensus 259 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 259 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999987644
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=6.4e-08 Score=73.62 Aligned_cols=88 Identities=7% Similarity=0.072 Sum_probs=46.7
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHH
Q 042098 457 DLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (566)
..+.+.|++++|+..|++... +.+...|..+..++.+.|++++|+..++++++.+|.++..|..++.++...|++++|
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHH
Confidence 344455555555555555432 133444555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhC
Q 042098 535 AKMRALMREK 544 (566)
Q Consensus 535 ~~~~~~~~~~ 544 (566)
.+.+++..+.
T Consensus 91 ~~~~~~a~~~ 100 (117)
T d1elwa_ 91 KRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 5555555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.65 E-value=7.5e-08 Score=81.62 Aligned_cols=117 Identities=10% Similarity=-0.053 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHH
Q 042098 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGAL 487 (566)
Q Consensus 411 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l 487 (566)
|+...+......+.+.|++++|+..|++.... .|+ ...|..+..+|.+.|++++|+..|++...- | +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 77777777888888888999999988888765 454 667888888888888888888888887653 4 56778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCC
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (566)
..++...|++++|...|++++++.|++...+...+..+...+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~ 121 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 121 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888877665555555544444333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=2.6e-07 Score=70.11 Aligned_cols=104 Identities=14% Similarity=0.057 Sum_probs=85.2
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKN 496 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 496 (566)
...+...|++++|+..|+...+. .|+ ...|..+..+|...|++++|+..+++... +.+...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 45577788888888888888765 454 66788888888888888888888887764 3567888889999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 497 TDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
+++|+..++++++.+|.++.++..+.++-.
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999988888876643
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=5.2e-07 Score=72.87 Aligned_cols=115 Identities=10% Similarity=-0.004 Sum_probs=92.0
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKN 496 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 496 (566)
...|.+.|++++|...|++..+. .|+ ...|..+..+|...|++++|++.|++..+ +.+...|..++.++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 45677888888898888888865 455 67788888888899999999998888764 2456788889999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHH--HhCCChHHHHHH
Q 042098 497 TDVSQRVMQLLLEIESSNSGNYVISSKIF--ANLKMWDDSAKM 537 (566)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 537 (566)
+++|...++++++..|.++..+..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998888776664 344556666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.57 E-value=9.6e-08 Score=71.93 Aligned_cols=90 Identities=9% Similarity=-0.106 Sum_probs=80.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCC
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (566)
..+...+.+.|++++|+..|++.... | +...|..+..++.+.|++++|+..++++++.+|.++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34567788899999999999887653 4 578889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 042098 531 WDDSAKMRALMR 542 (566)
Q Consensus 531 ~~~A~~~~~~~~ 542 (566)
+++|.+.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998763
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=9e-07 Score=73.82 Aligned_cols=127 Identities=14% Similarity=0.042 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMV 456 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 456 (566)
.|+. ...+...|++++|++.|.++ .+|++.++..+...+...|++++|++.|++..+. .|+ ...|..+.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp~~~~a~~~~g 77 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAV------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRG 77 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTS------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---hhhhhhhHHHHH
Confidence 3443 55677899999999998753 4688888889999999999999999999999865 565 67888999
Q ss_pred HHHHhcCCHHHHHHHHHhCCC----CC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 457 DLYARAGHLSEAWDFVERMPE----KV--------------DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~----~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
.+|.+.|++++|++.|++... .+ ...++..+..++.+.|++++|.+.++++++..|..
T Consensus 78 ~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 78 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999998887532 11 12455667788899999999999999999988874
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.54 E-value=2.9e-07 Score=77.81 Aligned_cols=98 Identities=9% Similarity=-0.055 Sum_probs=83.4
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHH
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHY 452 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~ 452 (566)
|+...+......|.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..|+... .+.|+ ..+|
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~---p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~ 75 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAH 75 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHH
Confidence 667777788889999999999999999998874 4567788888899999999999999999887 45776 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
..+..+|.+.|++++|+..|++...
T Consensus 76 ~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 76 FFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999987653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=3.9e-07 Score=73.63 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
+......|.+.|++++|+..|++... +.+...|..+..++...|++++|.+.|+++++.+|.+..+|..++.++...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 33445678899999999999998875 3567888999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 042098 530 MWDDSAKMRALMREKGV 546 (566)
Q Consensus 530 ~~~~A~~~~~~~~~~g~ 546 (566)
++++|.+.++++.+...
T Consensus 93 ~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKP 109 (159)
T ss_dssp CHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 99999999999987654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=8e-07 Score=74.17 Aligned_cols=88 Identities=10% Similarity=-0.012 Sum_probs=81.4
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 535 (566)
...+...|++++|++.|.++. .|+..+|..+..++...|++++|++.|+++++++|.++..|..++.+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 456678999999999999875 5788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 042098 536 KMRALMREK 544 (566)
Q Consensus 536 ~~~~~~~~~ 544 (566)
+.+++..+.
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=3.5e-06 Score=75.61 Aligned_cols=162 Identities=10% Similarity=-0.020 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCCCCHHHHHHHHHHHh-hhCcHHHHHHHHHHhHHhc---CCCCC-
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKE----GGAARPNDVTFIGVLSACV-HAGLVDEGRRLFDLMSSSF---GLIPK- 448 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~~~p~~~t~~~ll~~~~-~~g~~~~A~~~~~~~~~~~---~~~p~- 448 (566)
+|..+..+|.+.|++++|...+++..+. |. ......++..+...|. ..|++++|.+.+++..+.. +-.+.
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~ 157 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc-chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 3555555555666666666665554331 10 0111233444444443 2466666666666554321 11111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEK----V----DE-IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG--- 516 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--- 516 (566)
..++..+...|...|++++|++.|+++... + .. ..+...+..+...|+.+.|.+.++++.+.+|....
T Consensus 158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre 237 (290)
T d1qqea_ 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHH
Confidence 234555666666666666666666654321 1 00 11223334455566666666666666666553221
Q ss_pred --hHHHHHHHHHh--CCChHHHHHHHHH
Q 042098 517 --NYVISSKIFAN--LKMWDDSAKMRAL 540 (566)
Q Consensus 517 --~~~~l~~~~~~--~g~~~~A~~~~~~ 540 (566)
....++.++.. .+.+++|...++.
T Consensus 238 ~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 22334444443 2345666655543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.9e-06 Score=65.34 Aligned_cols=106 Identities=14% Similarity=0.011 Sum_probs=84.1
Q ss_pred HHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCC-CCH---HHHHHHH
Q 042098 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGH---LSEAWDFVERMPEK-VDE---IVLGALL 488 (566)
Q Consensus 417 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~~---~~~~~l~ 488 (566)
..++..+...+++++|.+.|+..... .|+ +.++..+..++.+.++ +++|+.+++++... |+. .+|..+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 35677888889999999999988865 454 6788888888887554 45699999988764 333 3677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 042098 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525 (566)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (566)
.+|.+.|++++|++.|+++++.+|++..+......+.
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999988777665443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=2.1e-06 Score=77.14 Aligned_cols=167 Identities=8% Similarity=-0.053 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCCC-CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKE----GGAARP-NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK---- 448 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---- 448 (566)
.|......|...|++++|...|.+..+. + -++ -..+|..+...|.+.|++++|.+.++.......-..+
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~--~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence 3666778899999999999999988652 2 112 2367888899999999999999999987654211222
Q ss_pred hhHHHHHHHHHHh-cCCHHHHHHHHHhCCC----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---
Q 042098 449 SEHYSCMVDLYAR-AGHLSEAWDFVERMPE----KV----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG--- 516 (566)
Q Consensus 449 ~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--- 516 (566)
..++..+...|.. .|++++|++.+++... .. ...++..+...+...|++++|...++++....|.+..
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 196 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhh
Confidence 3456667777754 6999999999987643 11 2345777889999999999999999999998766542
Q ss_pred ----hHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 517 ----NYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 517 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.+...+.++...|+++.|.+.+++..+...
T Consensus 197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 345667788899999999999998876643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.43 E-value=0.00027 Score=61.76 Aligned_cols=226 Identities=9% Similarity=-0.047 Sum_probs=142.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCccccCC
Q 042098 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS----IGALDLGKWVDKYASQRGLRHDIFCGS 360 (566)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (566)
|+..+..|...+.+.+++++|++.|++..+.| +...+..+-..+.. ..+...+...+......+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 34455556666666777777777777776655 23333333333322 223344444443333322
Q ss_pred HHHHHHHHccCCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh----hhCcHHHH
Q 042098 361 IDDALKVFEDMPVTNEVSWNAMISALAF----NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV----HAGLVDEG 432 (566)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~----~~g~~~~A 432 (566)
+......+...+.. .++.+.|...++...+.| . . .....+...+. .......+
T Consensus 69 --------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g--~--~-~a~~~l~~~~~~~~~~~~~~~~a 129 (265)
T d1ouva_ 69 --------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y--A-EGCASLGGIYHDGKVVTRDFKKA 129 (265)
T ss_dssp --------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C--H-HHHHHHHHHHHHCSSSCCCHHHH
T ss_pred --------------ccchhhccccccccccccchhhHHHHHHHhhhhhhh--h--h-hHHHhhcccccCCCcccchhHHH
Confidence 23344444444433 456788888888888776 2 2 22222222222 23456677
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 042098 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYAR----AGHLSEAWDFVERMPEKVDEIVLGALLGACQK----QKNTDVSQRVM 504 (566)
Q Consensus 433 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 504 (566)
...+...... .+...+..|...|.. ..+...+...++...+..+......+...+.. ..+.+.|...|
T Consensus 130 ~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~ 205 (265)
T d1ouva_ 130 VEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARY 205 (265)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhH
Confidence 7777665442 355667777777775 45677888888877666677777777766665 56899999999
Q ss_pred HHHHhhCCCCchhHHHHHHHHHh----CCChHHHHHHHHHHHhCCCc
Q 042098 505 QLLLEIESSNSGNYVISSKIFAN----LKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 505 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~ 547 (566)
+++.+.+ ++..+..|+.+|.. .+++++|.+.|++..+.|..
T Consensus 206 ~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 206 SKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 9998864 56788899999986 45899999999999888764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=3.5e-06 Score=68.59 Aligned_cols=86 Identities=10% Similarity=-0.013 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE-K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (566)
.+|..+..+|.+.|++++|+..+++... . .++..|..+..++...|++++|...|+++++++|+++.+...+..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3567788889999999999999988765 2 4778888899999999999999999999999999999999999888877
Q ss_pred CCChHHHH
Q 042098 528 LKMWDDSA 535 (566)
Q Consensus 528 ~g~~~~A~ 535 (566)
.+...+..
T Consensus 143 ~~~~~~~e 150 (170)
T d1p5qa1 143 IRRQLARE 150 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2.1e-06 Score=70.00 Aligned_cols=112 Identities=8% Similarity=-0.062 Sum_probs=81.2
Q ss_pred HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042098 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495 (566)
Q Consensus 416 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~ 495 (566)
+......+.+.|++++|+..|++........+.... .-...... ....+|..+..+|.+.|
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~---------------~~~~~~~~----~~~~~~~nla~~y~k~~ 76 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN---------------EEAQKAQA----LRLASHLNLAMCHLKLQ 76 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS---------------HHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch---------------HHHhhhch----hHHHHHHHHHHHHHhhh
Confidence 334445677777777777777777654222111100 00000000 01245777888999999
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
++++|+..++++++.+|.++.++..++.+|...|++++|...++++.+..+
T Consensus 77 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 77 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999988654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.21 E-value=1.5e-05 Score=64.61 Aligned_cols=93 Identities=12% Similarity=0.049 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (566)
.+|..+..+|.+.|++++|+..+++... +.+...|..+..++...|++++|...|+++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3566678888999999999999988765 35778888889999999999999999999999999999999988888777
Q ss_pred CCChHH-HHHHHHHHH
Q 042098 528 LKMWDD-SAKMRALMR 542 (566)
Q Consensus 528 ~g~~~~-A~~~~~~~~ 542 (566)
.+...+ ..+++..|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 765543 445555554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.5e-06 Score=65.91 Aligned_cols=95 Identities=8% Similarity=-0.031 Sum_probs=79.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCC--chhHHHHHHHH
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQK---NTDVSQRVMQLLLEIESSN--SGNYVISSKIF 525 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 525 (566)
..+++.+...+++++|.+.|++... ..+..++..+..++.+.+ +.++|+.+++++++.+|.+ ..++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4678888999999999999999875 357788888888888755 4557999999999887654 34889999999
Q ss_pred HhCCChHHHHHHHHHHHhCCCc
Q 042098 526 ANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 526 ~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
.+.|++++|++.++++.+..+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhhHHHHHHHHHHHHhCcC
Confidence 9999999999999999886543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=4e-06 Score=64.45 Aligned_cols=92 Identities=7% Similarity=0.064 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-------hHHHHH
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG-------NYVISS 522 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l~ 522 (566)
+..+...|.+.|++++|++.|++... +.+...+..+..+|.+.|+++.|++.++++++++|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 34556677777777777777777654 245667777788888888888888888888887776654 445566
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 042098 523 KIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.++...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 677777888888888877654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=1.3e-05 Score=65.14 Aligned_cols=134 Identities=13% Similarity=0.002 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHH
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCM 455 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l 455 (566)
..+......+...|++++|+..|++..+.. +... ........ . .+.| ....|..+
T Consensus 28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~----~~~~----------~~~~~~~~-------~---~~~~~~~~~~~nl 83 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV----EGSR----------AAAEDADG-------A---KLQPVALSCVLNI 83 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHH----------HHSCHHHH-------G---GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----hhhh----------hhhhhHHH-------H---HhChhhHHHHHHH
Confidence 345555666777788888888777765421 1100 00000000 0 1122 24567778
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (566)
..+|.+.|++++|+..+++..+ +.+...|..+..++...|++++|++.|+++++++|++..+...+..+........+
T Consensus 84 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 84 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999988765 25677888889999999999999999999999999999888888877765555444
Q ss_pred H
Q 042098 534 S 534 (566)
Q Consensus 534 A 534 (566)
+
T Consensus 164 ~ 164 (169)
T d1ihga1 164 K 164 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.12 E-value=5.1e-06 Score=66.19 Aligned_cols=110 Identities=7% Similarity=-0.054 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK---SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 491 (566)
.+..-...+.+.|++.+|+..|+.........+. ....... . .....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~-----------------~----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK-----------------K----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH-----------------H----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhh-----------------h----hHHHHHHhhHHHHH
Confidence 3444455677778888888877776653211111 0000000 0 00123455566666
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
.+.|++++|++.++++++.+|.+..+|..++.+|...|++++|...|++..+..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666666666666666666666666666666666666666666666666666544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.11 E-value=1.6e-05 Score=63.19 Aligned_cols=128 Identities=8% Similarity=-0.116 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 455 (566)
...+......+.+.|++.+|+..|++....- |... ......... ... .....+|..+
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~----~~~~-----------~~~~~~~~~---~~~-----~~~~~~~~Nl 73 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF----IHTE-----------EWDDQILLD---KKK-----NIEISCNLNL 73 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----TTCT-----------TCCCHHHHH---HHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cchh-----------hhhhHHHHH---hhh-----hHHHHHHhhH
Confidence 4456777788999999999999999988642 2110 000000000 000 0123467788
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
..+|.+.|++++|++.+++... +.+...|..+..++...|++++|...|+++++++|.+..+...+..+..
T Consensus 74 a~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 74 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8999999999999999998764 2477899999999999999999999999999999999988887766544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=7.1e-06 Score=66.69 Aligned_cols=67 Identities=15% Similarity=0.024 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
....|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|++.++++.+...
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3456777889999999999999999999999999999999999999999999999999999988644
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.02 E-value=0.0042 Score=55.35 Aligned_cols=127 Identities=13% Similarity=0.154 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCch
Q 042098 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237 (566)
Q Consensus 158 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 237 (566)
..+...|.+.|.++.|..++..+. -|..++..+.+.++++.|.+++.+.. +..+|..+...|.......
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp -----------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHH
Confidence 344445555555555555555443 34455555555666666655554331 3345555555544433332
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHHcC
Q 042098 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV---NKDVVTWNAMITAYAQNG 300 (566)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~ 300 (566)
.+ .+.......+......++..|...|.+++...+++... ..+...++.++..|++.+
T Consensus 87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 21 11111122222233456667777777777777777542 345556677777776654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.02 E-value=1.6e-05 Score=64.42 Aligned_cols=65 Identities=9% Similarity=-0.009 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
..|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|.+.++++.+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P 129 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 129 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45666778899999999999999999999999999999999999999999999999999988654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.00 E-value=1.7e-05 Score=64.72 Aligned_cols=126 Identities=10% Similarity=-0.034 Sum_probs=89.4
Q ss_pred CHHHHHHHH---HHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH--HHHHHHHhCCCCCCHHHHHH
Q 042098 412 NDVTFIGVL---SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS--EAWDFVERMPEKVDEIVLGA 486 (566)
Q Consensus 412 ~~~t~~~ll---~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~ 486 (566)
|...|..+. ......|++++|.+.|...... .+....-. ...+.+- ++..+ +. .....+..
T Consensus 7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l~~------~~~~~w~~~~r~~l-~~----~~~~a~~~ 72 (179)
T d2ff4a2 7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALRE---WRGPVLDD------LRDFQFVEPFATAL-VE----DKVLAHTA 72 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCSSTTGG------GTTSTTHHHHHHHH-HH----HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---Cccccccc------CcchHHHHHHHHHH-HH----HHHHHHHH
Confidence 444454444 4567789999999999888754 22211000 0001111 11111 11 12456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH-----hCCCccCCc
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR-----EKGVSKTPG 551 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~~~~~ 551 (566)
+..++...|++++|...++++++.+|.+...|..++.+|.+.|++++|.+.|+++. +.|+.+.+.
T Consensus 73 la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 73 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 88999999999999999999999999999999999999999999999999999984 468877654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.95 E-value=4.8e-05 Score=56.53 Aligned_cols=89 Identities=9% Similarity=-0.053 Sum_probs=68.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLY 459 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 459 (566)
.+...+.+.|++++|+..|++..... +-+...|..+..++.+.|++++|+..++...+. .|+ ...+..+...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y 94 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSH 94 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc---cccchhhhhhhhhhhhhhhHHHhhccccccccc---ccccccchHHHHHHH
Confidence 34566778888888888888888754 235677888888888888888888888887764 455 66777888888
Q ss_pred HhcCCHHHHHHHHHhC
Q 042098 460 ARAGHLSEAWDFVERM 475 (566)
Q Consensus 460 ~~~g~~~~A~~~~~~~ 475 (566)
...|++++|++.+++.
T Consensus 95 ~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 95 TNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 8888888888887763
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.83 E-value=0.0068 Score=52.38 Aligned_cols=114 Identities=10% Similarity=-0.043 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh----hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----c
Q 042098 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH----AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR----A 462 (566)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 462 (566)
....+...+......+ +...+..|...+.. ..+...+...++...+. | +......+...|.. .
T Consensus 125 ~~~~a~~~~~~~~~~~-----~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~-g---~~~A~~~lg~~y~~g~~~~ 195 (265)
T d1ouva_ 125 DFKKAVEYFTKACDLN-----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGAT 195 (265)
T ss_dssp CHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSC
T ss_pred hhHHHHHHhhhhhccc-----ccchhhhhhhhhccCCCcccccccchhhhhccccc-c---ccccccchhhhcccCcccc
Confidence 3455555555555432 44455555555543 34556666666655543 2 44444555555554 4
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC
Q 042098 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQK----QKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 463 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~ 513 (566)
.++++|+..|++..+..++..+..|...|.. ..+.+.|.+.|+++.+.++.
T Consensus 196 ~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 196 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 5788888888877666666777777776664 34788888888888877644
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.79 E-value=5.6e-05 Score=59.18 Aligned_cols=127 Identities=14% Similarity=0.107 Sum_probs=80.3
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh----------CcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 042098 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA----------GLVDEGRRLFDLMSSSFGLIPK-SEHYSC 454 (566)
Q Consensus 386 ~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 454 (566)
|-+.+.+++|...|+...+.. +-+...+..+..++... +.+++|+..|++..+. .|+ ..+|..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~---P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l---~P~~~~a~~~ 80 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWC 80 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC---CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---cchhhHHHhh
Confidence 455667788888888887754 34455666666665533 3346677777666643 454 456666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHH
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (566)
+..+|...|++. ++... ..++++.|.+.|+++++++|++...+..|... .+|
T Consensus 81 lG~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka 132 (145)
T d1zu2a1 81 IGNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKA 132 (145)
T ss_dssp HHHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTH
T ss_pred HHHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHH
Confidence 666665544321 11111 11246889999999999999998877777555 466
Q ss_pred HHHHHHHHhCCC
Q 042098 535 AKMRALMREKGV 546 (566)
Q Consensus 535 ~~~~~~~~~~g~ 546 (566)
.+++.++.++|+
T Consensus 133 ~~~~~e~~k~~~ 144 (145)
T d1zu2a1 133 PQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHSSS
T ss_pred HHHHHHHHHHhc
Confidence 677777777664
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=5.6e-05 Score=73.15 Aligned_cols=149 Identities=11% Similarity=-0.033 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH--HhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 042098 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSA--CVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEA 468 (566)
Q Consensus 392 ~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 468 (566)
+..+.+.++...+.. ..++..-....+.. ....+.++.++..++... ++.|+ ...+..+...+.+.|+.++|
T Consensus 65 y~~~ie~~r~~~k~~--~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A 139 (497)
T d1ya0a1 65 FKNQITTLQGQAKNR--ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAI 139 (497)
T ss_dssp THHHHHHHHHHHSCS--SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------
T ss_pred HHHHHHHHHHhcccc--cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHH
Confidence 345566666665543 23333222222222 223445555555544332 44444 45667777778888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
...++.........++..+...+...|++++|...|+++++..|++...|..|+.++...|++.+|...+.+.....
T Consensus 140 ~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~ 216 (497)
T d1ya0a1 140 VKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 77665543222235667778888888899999999999998889988899999999989999998888888876544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.61 E-value=9.3e-05 Score=58.83 Aligned_cols=63 Identities=10% Similarity=-0.076 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----------CchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESS-----------NSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
..|+.+..++.+.|++++|...++++++..|. ...++..++.+|...|++++|.+.++++.+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888888888888888888888875332 1235778899999999999999999988653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.00012 Score=52.37 Aligned_cols=73 Identities=14% Similarity=0.025 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPE--------KV-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (566)
+..+...+.+.|++++|+..|++... .+ ...++..+..++.+.|++++|...++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 33556666667777766666665432 11 2467888999999999999999999999999999998888775
Q ss_pred HH
Q 042098 523 KI 524 (566)
Q Consensus 523 ~~ 524 (566)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00062 Score=51.64 Aligned_cols=60 Identities=10% Similarity=0.021 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 441 (566)
+..+...+.+.|++++|+..|.+.++.+ +.+...+..+..+|.+.|++++|+..++++.+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 3445556666666777777666666653 23455666666666666666666666666554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.50 E-value=0.00025 Score=61.48 Aligned_cols=127 Identities=9% Similarity=-0.046 Sum_probs=85.7
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC
Q 042098 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGH 464 (566)
Q Consensus 386 ~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 464 (566)
..+.|++++|+..+++..+.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+...+...+.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~---P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~ 79 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQA 79 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccc
Confidence 346789999999999998874 456788888899999999999999999988865 666 3444445555544444
Q ss_pred HHHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 042098 465 LSEAWDFVERM--PEKVD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518 (566)
Q Consensus 465 ~~~A~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (566)
.+++..-.... ...|+ ...+......+...|+.++|.+.++++.+..|..+..+
T Consensus 80 ~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 80 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred cHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 44433322211 11122 22333344667778899999999999888888776544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=3.4e-05 Score=74.74 Aligned_cols=153 Identities=7% Similarity=-0.058 Sum_probs=86.0
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHH
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHY 452 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~ 452 (566)
++...+..+...+.+.|+.++|...+.+..... | ..++..+...+...|++++|...|++..+. .|+ ...|
T Consensus 118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l---~P~~~~~~ 189 (497)
T d1ya0a1 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI----C-QHCLVHLGDIARYRNQTSQAESYYRHAAQL---VPSNGQPY 189 (497)
T ss_dssp -------------------------CCHHHHHH----H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHH
T ss_pred hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC----H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCchHHH
Confidence 456677888888888999999988887765432 2 356777888888899999999999988865 666 5789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHh
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS---NSGNYVISSKIFAN 527 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 527 (566)
+.|...+...|+..+|+..|.+... .|-..++..|...+.+..+..++. +..+. ....+..+...+..
T Consensus 190 ~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~~-------~~~~~~~~~~~~f~~~~~~l~~ 262 (497)
T d1ya0a1 190 NQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV-------KTKWGVSDFIKAFIKFHGHVYL 262 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCCC-------CSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhhh-------ccccccchHHHHHHHHHHHHHh
Confidence 9999999999999999998887654 377788888877765443211100 00011 12244455556667
Q ss_pred CCChHHHHHHHHHH
Q 042098 528 LKMWDDSAKMRALM 541 (566)
Q Consensus 528 ~g~~~~A~~~~~~~ 541 (566)
.+.+++..++.+++
T Consensus 263 ~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 263 SKSLEKLSPLREKL 276 (497)
T ss_dssp TCCGGGHHHHHHHH
T ss_pred CCchhhHHHHHHHH
Confidence 77776666655444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.44 E-value=5.4e-05 Score=59.26 Aligned_cols=99 Identities=8% Similarity=0.043 Sum_probs=70.7
Q ss_pred HhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042098 423 CVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQ 501 (566)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 501 (566)
|-+.+.+++|...|+...+. .|+ ...+..+..+|...+++..+.+ ..+.+++|+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~---~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai 61 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHH
Confidence 44556677777777776654 444 4556666666655544433332 224567899
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhCCC-----------hHHHHHHHHHHHhCCC
Q 042098 502 RVMQLLLEIESSNSGNYVISSKIFANLKM-----------WDDSAKMRALMREKGV 546 (566)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~g~ 546 (566)
..|+++++++|+++.+|..++.+|...|+ +++|.+.|+++.+..+
T Consensus 62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P 117 (145)
T d1zu2a1 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 117 (145)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence 99999999999999999999999987764 6888888988877654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.44 E-value=0.0097 Score=42.85 Aligned_cols=141 Identities=11% Similarity=0.069 Sum_probs=108.0
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 042098 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465 (566)
Q Consensus 386 ~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (566)
+.-.|..++..+++.+.... .+..-|+-++--....-+-+...++++.+-+-+.+.|-. -...++.++...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s-----s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n~- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS-----STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC-
T ss_pred HHHhhhHHhHHHHHHHHccc-----CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhcc-
Confidence 45678899999999998764 356667777777777778888888888776655544432 22344555555443
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 466 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
+...++..+......|+-+.-.++++.+.+.+..++.....++.+|.+.|...++.+++.++.++|
T Consensus 85 --------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 85 --------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp --------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred --------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 455666778889999999999999999888887889999999999999999999999999999999
Q ss_pred Cc
Q 042098 546 VS 547 (566)
Q Consensus 546 ~~ 547 (566)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 75
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.0004 Score=49.46 Aligned_cols=66 Identities=9% Similarity=-0.146 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSN-------SGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
..+-.+...+.+.|+++.|...|+++++..|.+ ..++..|+.++.+.|++++|.+.++++.+..+.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~ 78 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence 344467888999999999999999999875443 457889999999999999999999999887543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.34 E-value=0.00045 Score=54.67 Aligned_cols=91 Identities=12% Similarity=0.003 Sum_probs=57.6
Q ss_pred HhhhCcHHHHHHHHHHhHHhcCCCCC----------hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC----
Q 042098 423 CVHAGLVDEGRRLFDLMSSSFGLIPK----------SEHYSCMVDLYARAGHLSEAWDFVERMPE--------KVD---- 480 (566)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~---- 480 (566)
+...|++++|++.|++..+...-.|+ ..+|+.+..+|...|++++|++.+++... .++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 44456666666666665543222221 23566667777777777777766665432 111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 481 -EIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 481 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
...+..+..++...|++++|...|++++++.|.
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 234666788999999999999999999987543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.29 E-value=0.0031 Score=50.78 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHH----hcCCCCChhH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS----SFGLIPKSEH 451 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~ 451 (566)
...+..+...+...|++++|+..++++.+.. +-+...|..++.++...|+.++|++.|+++.+ ..|+.|...+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~---P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 4467888999999999999999999999874 45788999999999999999999999998854 3589998655
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.22 E-value=0.061 Score=47.55 Aligned_cols=204 Identities=13% Similarity=0.109 Sum_probs=104.9
Q ss_pred cCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHH
Q 042098 64 DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 143 (566)
+.|.++.|..++..+. .|..++..+.+. ++++.|.+++.+.. +..+|..+...|.+......+
T Consensus 26 ~~~lye~A~~lY~~~~-----d~~rl~~~~v~l-~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la----- 88 (336)
T d1b89a_ 26 DEKMYDAAKLLYNNVS-----NFGRLASTLVHL-GEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA----- 88 (336)
T ss_dssp ---CTTTHHHHHHHTT-----CHHHHHHHHHTT-TCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHH-----
T ss_pred HCCCHHHHHHHHHhCC-----CHHHHHHHHHhh-ccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHHH-----
Confidence 6677777777776653 566666777776 77777766655431 455666666666655444332
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCH
Q 042098 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR---ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220 (566)
Q Consensus 144 ~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 220 (566)
.+.......++.....++..|-..|.+++...+++... ..+...++.++..|++.+ .++.++.+... +..-|
T Consensus 89 ~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~---s~~y~- 163 (336)
T d1b89a_ 89 QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF---WSRVN- 163 (336)
T ss_dssp HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH---STTSC-
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc---cccCC-
Confidence 11222233444455566777777777777777777543 235556667777666643 33333333222 11111
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 042098 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300 (566)
Q Consensus 221 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 300 (566)
...++..|...+-+ ..++-.|.+.|+++.|..+.-.-. ++.......+..+.+..
T Consensus 164 --~~k~~~~c~~~~l~----------------------~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~ 218 (336)
T d1b89a_ 164 --IPKVLRAAEQAHLW----------------------AELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVA 218 (336)
T ss_dssp --HHHHHHHHHTTTCH----------------------HHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCS
T ss_pred --HHHHHHHHHHcCCh----------------------HHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccC
Confidence 12233334333332 234455566666666655433221 12222334455566666
Q ss_pred CHHHHHHHHHHHHH
Q 042098 301 LSNEAIMLFNRMKY 314 (566)
Q Consensus 301 ~~~~a~~~~~~m~~ 314 (566)
+.+...+++....+
T Consensus 219 N~e~~~~~i~~yL~ 232 (336)
T d1b89a_ 219 NVELYYRAIQFYLE 232 (336)
T ss_dssp STHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 66655555554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.10 E-value=0.00014 Score=63.15 Aligned_cols=122 Identities=10% Similarity=0.055 Sum_probs=85.0
Q ss_pred HhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHH
Q 042098 423 CVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE-KVD-EIVLGALLGACQKQKNTDV 499 (566)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~ 499 (566)
..+.|++++|+..+++.++. .|+ ...+..+...|+..|++++|.+.++.... .|+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 45679999999999999875 565 78999999999999999999999999865 354 3444444444443333332
Q ss_pred HHHHHHHHHhh-CCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 500 SQRVMQLLLEI-ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 500 A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
+.......... +|++...+...+..+...|++++|.++++++.+....
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 22211111111 2444455666778899999999999999998875443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.36 E-value=0.031 Score=42.06 Aligned_cols=83 Identities=8% Similarity=-0.027 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----CCChHHH
Q 042098 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQK----QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN----LKMWDDS 534 (566)
Q Consensus 463 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A 534 (566)
.+.++|++.+++..+..++.....|...|.. ..|.++|.++|+++.+.+ ++.....|+.+|.. ..+.++|
T Consensus 37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHH
Confidence 4555666666655444445554445444443 346788888888887653 45567777777776 4678888
Q ss_pred HHHHHHHHhCCCc
Q 042098 535 AKMRALMREKGVS 547 (566)
Q Consensus 535 ~~~~~~~~~~g~~ 547 (566)
.+++++..+.|..
T Consensus 115 ~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 115 VKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCH
Confidence 8888888877764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.72 E-value=0.78 Score=42.35 Aligned_cols=19 Identities=5% Similarity=0.195 Sum_probs=12.0
Q ss_pred HHhcCCHHHHHHHHhccCC
Q 042098 164 YARCGKLDSARKVFDEIRE 182 (566)
Q Consensus 164 ~~~~~~~~~A~~~~~~~~~ 182 (566)
..+.|+...+.++...+..
T Consensus 16 a~~~~~~~~~~~~~~~L~d 34 (450)
T d1qsaa1 16 AWDNRQMDVVEQMMPGLKD 34 (450)
T ss_dssp HHHTTCHHHHHHHSGGGTT
T ss_pred HHHCCCHHHHHHHHhhhcC
Confidence 3456677777776666643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.35 E-value=0.14 Score=38.09 Aligned_cols=111 Identities=9% Similarity=-0.001 Sum_probs=78.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHH
Q 042098 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR----AGHLS 466 (566)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 466 (566)
++++|+++|++..+.| . |.. ...|. .....+.++|...+++..+. | ++.....|...|.. ..+.+
T Consensus 8 d~~~A~~~~~kaa~~g--~-~~a--~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~ 76 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--E-MFG--CLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLR 76 (133)
T ss_dssp HHHHHHHHHHHHHHTT--C-TTH--HHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CHHHHHHHHHHHHHCC--C-hhh--hhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhH
Confidence 6788889998888877 2 322 22222 23456788899998887764 4 44555666666654 45789
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 042098 467 EAWDFVERMPEKVDEIVLGALLGACQK----QKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 467 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 512 (566)
+|.++|++..+..++.....|...|.. ..|.++|.++++++.+.+.
T Consensus 77 ~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 77 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 999999988776677777777777665 4689999999999988754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.26 E-value=0.04 Score=40.09 Aligned_cols=74 Identities=12% Similarity=0.029 Sum_probs=47.0
Q ss_pred CChhHHHHHHHHHHhcC---CHHHHHHHHHhCCCC-CC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 447 PKSEHYSCMVDLYARAG---HLSEAWDFVERMPEK-VD-E-IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 447 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~-~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
|...+--....++++.. +.++++.+++++... |. . ..+-.|.-+|.+.|++++|.+.++++++.+|.+..+...
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 34445555666666554 455777777776532 32 2 344556667778888888888888888888887655443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=1.4 Score=40.61 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=42.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
+..+...|....|...+..+.+.. ++.-...++....+.|.++.|+....+..
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 466778899999999998887543 46677788999999999999998776553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.05 E-value=0.52 Score=33.98 Aligned_cols=66 Identities=6% Similarity=-0.072 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCc-hhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 479 VDEIVLGALLGACQKQK---NTDVSQRVMQLLLEIESSNS-GNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
+...+--....++.++. +.++++.+++++.+.+|.+. ..+..|+.+|.+.|++++|++.++.+.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 33334333444444332 33455556665555555443 35555556666666666666666555543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.83 E-value=2.3 Score=28.68 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 042098 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457 (566)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 457 (566)
+.-++.+-++.+.... .-|++......+++|.+.+++..|.++|+..+.+. .++...|..++.
T Consensus 21 D~we~rrgmN~l~~~D--lVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYD--LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSS--BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccc--cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence 4556777788888777 89999999999999999999999999999888763 334567766654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=85.70 E-value=4.6 Score=28.78 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=54.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCC
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (566)
+....+..++.+.++|+-++-.++++.+.+.+ +|++.....+..+|.+.|...++.+++.+.-+. |+.
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~---~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN---EVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hHH
Confidence 34456777788889999999999999887764 788888888899999999999999999888776 653
|