Citrus Sinensis ID: 042109

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-
Protein Sequence
SATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL
Secondary Structure (PSIPRED)
ccccccEEEccccccHHHHHHHHcccccccccccccccEEEEEEEccccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccHHHHHHHHccccHHEEEEcccccEEEEEEEccccEEEcccEEEEEc
Coil and Loop (DISEMBL)
SATGFLVCDVAEAVSTSRRALRaskipesefttlpnglkyydvkvgggpvakkgsrvavrl
Flexible Loop (DISEMBL)
satgflvcdvaeavstsrralraskipesefttlpnglkyydvkvgggpvakkgsrvavrl
Low Complexity Region (SEG)
SATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDvkvgggpvakkgSRVAVRL
Disordered region (IsUnstruct)
****FLVCDVAEAV****************FTTLPNGLKYYDVKVGG**************
Disordered Region (DISOPRED)
***G**************************FTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL
Disordered Region (DISEMBL)
SATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVA**********
Disordered Region (DISPRO)
*ATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
SATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	61	2.2.26 [Sep-21-2011]
Q9SR70	230	Peptidyl-prolyl cis-trans	yes	no	0.983	0.260	0.75	1e-17
Q9LM71	232	Peptidyl-prolyl cis-trans	no	no	0.934	0.245	0.389	9e-05

>sp|Q9SR70|FK164_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-4 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 50/60 (83%)

Query: 1   SATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
           +A+G L    AEAVSTSRRALRASK+PES+FTTLPNGLKYYD+KVG G  A KGSRVAV 
Sbjct: 70  TASGILSTGSAEAVSTSRRALRASKLPESDFTTLPNGLKYYDIKVGNGAEAVKGSRVAVH 129

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9LM71|FKB18_ARATH Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic OS=Arabidopsis thaliana GN=FKBP18 PE=1 SV=2

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 3   TGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL 61
           T F V   + + +  RR+ +   IP  E++T P GLK+YD++ G GPVA +GS   V  
Sbjct: 59  TSFFVLTPSSSEARERRSRKV--IPLEEYSTGPEGLKFYDIEEGKGPVATEGSTAQVHF 115

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
224138798	237	predicted protein [Populus trichocarpa]	0.983	0.253	0.816	4e-19
449440175	231	PREDICTED: peptidyl-prolyl cis-trans iso	0.983	0.259	0.816	7e-19
297829538	230	hypothetical protein ARALYDRAFT_897182 [	0.983	0.260	0.8	5e-18
225441076	233	PREDICTED: probable FKBP-type peptidyl-p	0.983	0.257	0.766	2e-17
351722879	237	uncharacterized protein LOC100305843 [Gl	0.983	0.253	0.716	1e-16
357440275	237	FK506-binding protein [Medicago truncatu	0.934	0.240	0.754	3e-16
388491196	229	unknown [Lotus japonicus]	0.983	0.262	0.733	3e-16
15232828	230	FKBP-like peptidyl-prolyl cis-trans isom	0.983	0.260	0.75	5e-16
356548345	233	PREDICTED: LOW QUALITY PROTEIN: probable	0.983	0.257	0.7	6e-16
147828025	1303	hypothetical protein VITISV_022322 [Viti	0.967	0.045	0.696	2e-15

>gi|224138798|ref|XP_002322904.1| predicted protein [Populus trichocarpa] gi|222867534|gb|EEF04665.1| predicted protein [Populus trichocarpa]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 52/60 (86%)

Query: 1   SATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
           +A G  VCDVAEA STSRRALRASKIPES+FTTL NGLKYYD+KVGGGP A KGSRVAV 
Sbjct: 77  TAVGIYVCDVAEAASTSRRALRASKIPESDFTTLSNGLKYYDLKVGGGPKAVKGSRVAVH 136

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440175|ref|XP_004137860.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic-like [Cucumis sativus] gi|449501004|ref|XP_004161251.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic-like [Cucumis sativus]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 52/60 (86%)

Query: 1   SATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
           +ATG   C+VAEAVSTSRRALRASKIPESEFTTLPNGLKYYD+KVGGG  A  GSRVAV 
Sbjct: 71  TATGIYFCNVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDLKVGGGTKAVNGSRVAVH 130

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829538|ref|XP_002882651.1| hypothetical protein ARALYDRAFT_897182 [Arabidopsis lyrata subsp. lyrata] gi|297328491|gb|EFH58910.1| hypothetical protein ARALYDRAFT_897182 [Arabidopsis lyrata subsp. lyrata]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 52/60 (86%)

Query: 1   SATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
           +A+G L  D AEAVSTSRRALRASK+PESEFTTLPNGLKYYD+KVG G  A KGSRVAVR
Sbjct: 70  TASGILSTDSAEAVSTSRRALRASKLPESEFTTLPNGLKYYDIKVGNGAEAVKGSRVAVR 129

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441076|ref|XP_002264435.1| PREDICTED: probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplastic isoform 1 [Vitis vinifera] gi|297740022|emb|CBI30204.3| unnamed protein product [Vitis vinifera]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 51/60 (85%)

Query: 1   SATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
           +A G  VCDVA AVSTSRRALR +KIPES++TTLPNGLKYYD+KVGGG  A KGSRVAV 
Sbjct: 73  AAAGIYVCDVAGAVSTSRRALRGAKIPESDYTTLPNGLKYYDLKVGGGLKAVKGSRVAVH 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722879|ref|NP_001237515.1| uncharacterized protein LOC100305843 [Glycine max] gi|255626751|gb|ACU13720.1| unknown [Glycine max]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 49/60 (81%)

Query: 1   SATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
           +  G   CDVA AVSTSRRALR +KIPES++TTLPNGLKYYD+KVG G  AKKGSRVA+ 
Sbjct: 73  TVVGVYACDVAGAVSTSRRALRGAKIPESDYTTLPNGLKYYDLKVGNGAEAKKGSRVAIH 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440275|ref|XP_003590415.1| FK506-binding protein [Medicago truncatula] gi|355479463|gb|AES60666.1| FK506-binding protein [Medicago truncatula] gi|388512787|gb|AFK44455.1| unknown [Medicago truncatula]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/57 (75%), Positives = 47/57 (82%)

Query: 4   GFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
           G   CDVAEAVSTSRRALR +KIPES+F TLPNGLKYYD+KVG G  A KGSRVA+ 
Sbjct: 80  GVYACDVAEAVSTSRRALRGAKIPESDFKTLPNGLKYYDLKVGDGAEAVKGSRVAIH 136

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491196|gb|AFK33664.1| unknown [Lotus japonicus]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/60 (73%), Positives = 48/60 (80%)

Query: 1   SATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
           +  G   CDVA AVSTSRRALR +KIPES+FTTLPNGLKYYD+KVG G  A KGSRVAV 
Sbjct: 69  TVAGVFACDVAGAVSTSRRALRGAKIPESDFTTLPNGLKYYDLKVGNGAEAVKGSRVAVH 128

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232828|ref|NP_187617.1| FKBP-like peptidyl-prolyl cis-trans isomerase-like protein [Arabidopsis thaliana] gi|75207316|sp|Q9SR70.1|FK164_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic; Short=PPIase FKBP16-4; AltName: Full=FK506-binding protein 16-4; Short=AtFKBP16-4; AltName: Full=Immunophilin FKBP16-4; AltName: Full=Rotamase; Flags: Precursor gi|6143884|gb|AAF04431.1|AC010927_24 unknown protein [Arabidopsis thaliana] gi|20453145|gb|AAM19814.1| AT3g10060/T22K18_11 [Arabidopsis thaliana] gi|21689613|gb|AAM67428.1| AT3g10060/T22K18_11 [Arabidopsis thaliana] gi|332641334|gb|AEE74855.1| FKBP-like peptidyl-prolyl cis-trans isomerase-like protein [Arabidopsis thaliana]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 50/60 (83%)

Query: 1   SATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
           +A+G L    AEAVSTSRRALRASK+PES+FTTLPNGLKYYD+KVG G  A KGSRVAV 
Sbjct: 70  TASGILSTGSAEAVSTSRRALRASKLPESDFTTLPNGLKYYDIKVGNGAEAVKGSRVAVH 129

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548345|ref|XP_003542563.1| PREDICTED: LOW QUALITY PROTEIN: probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplastic-like [Glycine max]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 48/60 (80%)

Query: 1   SATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
           +  G   CDVA AVSTSRRALR +KIPES++TTLPNGLKYYD+KVG G  AK GSRVA+ 
Sbjct: 73  TVAGVYACDVAGAVSTSRRALRGAKIPESDYTTLPNGLKYYDLKVGNGAEAKMGSRVAIH 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147828025|emb|CAN72920.1| hypothetical protein VITISV_022322 [Vitis vinifera]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/66 (69%), Positives = 51/66 (77%), Gaps = 7/66 (10%)

Query: 1   SATGFLVCDVAEAVSTSRRA-------LRASKIPESEFTTLPNGLKYYDVKVGGGPVAKK 53
           +A G  VCDVA AVSTSRRA       LR +KIPES++TTLPNGLKYYD+KVGGG  A K
Sbjct: 495 AAAGXYVCDVAGAVSTSRRAVGFSCFKLRGAKIPESDYTTLPNGLKYYDLKVGGGLKAVK 554

Query: 54  GSRVAV 59
           GSRVAV
Sbjct: 555 GSRVAV 560

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
TAIR|locus:2100063	230	AT3G10060 "AT3G10060" [Arabido	0.967	0.256	0.644	2.1e-13

TAIR|locus:2100063 AT3G10060 "AT3G10060" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/59 (64%), Positives = 42/59 (71%)

Query:     1 SATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDXXXXXXXXXXXXSRVAV 59
             +A+G L    AEAVSTSRRALRASK+PES+FTTLPNGLKYYD            SRVAV
Sbjct:    70 TASGILSTGSAEAVSTSRRALRASKLPESDFTTLPNGLKYYDIKVGNGAEAVKGSRVAV 128


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.129   0.355    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       61        49   0.00091  102 3  10 22  0.48    26
                                                     29  0.38    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  477 (51 KB)
  Total size of DFA:  83 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.10u 0.08s 8.18t   Elapsed:  00:00:01
  Total cpu time:  8.10u 0.08s 8.18t   Elapsed:  00:00:01
  Start:  Thu May  9 16:26:14 2013   End:  Thu May  9 16:26:15 2013

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0042631 "cellular response to water deprivation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SR70	FK164_ARATH	5, ., 2, ., 1, ., 8	0.75	0.9836	0.2608	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVI0861 hypothetical protein (237 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	61
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	2e-05

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 38.9 bits (91), Expect = 2e-05
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 32  TTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
            TLP+GL+Y  +K G G   KKG  V V 
Sbjct: 97  KTLPSGLQYKVLKAGDGAAPKKGDTVTVH 125

Length = 205

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	61
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.12
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.06
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	98.95
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.48
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	98.05
PF01346	124	FKBP_N: Domain amino terminal to FKBP-type peptidy	97.54
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.72

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=8.8e-11  Score=82.64  Aligned_cols=50  Identities=34%  Similarity=0.527  Sum_probs=45.4

Q ss_pred             hhhcccHHHHhhCCCCCCCcccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           12 EAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        12 ~~~~~~~~a~~~~~~~~~~~v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      ++...-..+|+++|.++.++.++||||||++++.|+|+.|++|++|.|||
T Consensus        77 ~~~~~~~~~f~~~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY  126 (205)
T COG0545          77 AANAAEGKAFLEKNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHY  126 (205)
T ss_pred             HHhHHhHHHHHhhhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEE
Confidence            33444566899999999999999999999999999999999999999999

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.06  E-value=1.7e-10  Score=79.56  Aligned_cols=44  Identities=16%  Similarity=0.305  Sum_probs=42.2

Q ss_pred             HHHHhhCCCCCCCcccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           18 RRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        18 ~~a~~~~~~~~~~~v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      -.+|+++|.+++++.++||||+|++++.|+|+.|+++++|.|||
T Consensus        84 ~~~fl~~~~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y  127 (206)
T PRK11570         84 GVKFLEENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHY  127 (206)
T ss_pred             HHHHHHHhhhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEE
Confidence            35799999999999999999999999999999999999999998

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=98.95  E-value=9e-10  Score=78.91  Aligned_cols=44  Identities=27%  Similarity=0.311  Sum_probs=42.2

Q ss_pred             HHHHhhCCCCCCCcccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           18 RRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        18 ~~a~~~~~~~~~~~v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      -.+|+.+|..+++++++||||+|++|++|+|+.|+.||+|.|||
T Consensus       128 ~~~fl~~~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y  171 (269)
T PRK10902        128 GKKYREKFAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNY  171 (269)
T ss_pred             HHHHHHHhccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEE
Confidence            35799999999999999999999999999999999999999998

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=1.4e-07  Score=67.05  Aligned_cols=30  Identities=63%  Similarity=1.091  Sum_probs=29.3

Q ss_pred             ccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           32 TTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        32 v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      .++++||+|+||++|+|+.|.+|++|.+||
T Consensus       116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y  145 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRY  145 (226)
T ss_pred             eecCCCcEEEEEEecCCCCCCCCCEEEEEE
Confidence            689999999999999999999999999999

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=98.05  E-value=8.9e-06  Score=55.10  Aligned_cols=42  Identities=21%  Similarity=0.380  Sum_probs=34.0

Q ss_pred             HHHhhCCCCCCCcccCCCCCeEEEeEc--ccCCCcCCCCeEEEeC
Q 042109           19 RALRASKIPESEFTTLPNGLKYYDVKV--GGGPVAKKGSRVAVRL   61 (61)
Q Consensus        19 ~a~~~~~~~~~~~v~~pSGLqy~dl~~--G~G~~p~~G~tV~VhY   61 (61)
                      .+++++| +...+.+++|||+|+.+++  |+|..|+.||+|.+||
T Consensus        53 ~~~i~~~-~~~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y   96 (177)
T TIGR03516        53 KRIISAD-SIVKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEY   96 (177)
T ss_pred             HHHHHhC-CCCCceECCCccEEEEEEecCCCCCcCCCCCEEEEEE
Confidence            3455554 3356788999999999976  7788999999999998

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]

Probab=97.54  E-value=2.8e-05  Score=48.34  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=21.6

Q ss_pred             cHHHHhhCCCCCCCcccCCCCCeEEE
Q 042109           17 SRRALRASKIPESEFTTLPNGLKYYD   42 (61)
Q Consensus        17 ~~~a~~~~~~~~~~~v~~pSGLqy~d   42 (61)
                      .-.+|+.+|..+++++++||||||++
T Consensus        99 ~~~~fla~n~k~~GV~~t~SGLqY~V  124 (124)
T PF01346_consen   99 EGEAFLAENAKKEGVKTTESGLQYKV  124 (124)
T ss_dssp             HHHHHHHHHHTSTTEEE-TTS-EEEE
T ss_pred             HHHHHHHHHcCCCCCEECCCCCeeeC
Confidence            44689999999999999999999985

This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.0017  Score=42.23  Aligned_cols=25  Identities=32%  Similarity=0.522  Sum_probs=23.5

Q ss_pred             CCeEEEeEcccC-CCcCCCCeEEEeC
Q 042109           37 GLKYYDVKVGGG-PVAKKGSRVAVRL   61 (61)
Q Consensus        37 GLqy~dl~~G~G-~~p~~G~tV~VhY   61 (61)
                      |++.+.|..|+| .-|++||+|.|||
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hY   27 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHY   27 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEE
Confidence            688999999999 7999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	61
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	1e-06
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	9e-06
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	5e-05
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	1e-04
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	1e-04
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	8e-04

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 41.2 bits (97), Expect = 1e-06
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 29 SEFTTLPNGLKYYDVKVGGGPVAKKGSRVAV 59
           EF+  P+GL + D  VG GP A KG  +  
Sbjct: 5  CEFSVSPSGLAFCDKVVGYGPEAVKGQLIKA 35

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 39.4 bits (92), Expect = 9e-06
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 23  ASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAV 59
             +I  S   T  +GLKY D+  G G  A+ G  V+V
Sbjct: 91  REQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSV 127

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 36.8 bits (86), Expect = 5e-05
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 28 ESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAV 59
               T  +GLKY D+  G G  A+ G  V+V
Sbjct: 20 HMTVVTTESGLKYEDLTEGSGAEARAGQTVSV 51

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 28 ESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAV 59
          +SE   L   +    +K G G    K S   +
Sbjct: 41 DSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFL 72

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 36.1 bits (84), Expect = 1e-04
 Identities = 7/49 (14%), Positives = 15/49 (30%)

Query: 11 AEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAV 59
           E      ++L           +   G+    ++ G G +    + V V
Sbjct: 1  GEGDDAPGQSLYERLSQRMLDISGDRGVLKDVIREGAGDLVAPDASVLV 49

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 34.3 bits (79), Expect = 8e-04
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 31  FTTLPNGLKYYDVKVGGGPVAKKGSRVAV 59
              L +G+   ++  G GP      RV V
Sbjct: 112 VKELADGILMTELTPGTGPKPDANGRVEV 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	61
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	98.95
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	98.93
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	98.92
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	98.82
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	98.76
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	98.64
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	98.51
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	98.34
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	98.32
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	98.32
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	98.31
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	98.28
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	98.28
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	98.27
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	98.26
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	98.18
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	98.16
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	98.08
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	97.96
2ppn_A	107	FK506-binding protein 1A; high resolution protein	97.95
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.94
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	97.75
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	97.62
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	97.61
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	97.6
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.47
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.31
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	96.24
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	96.14
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	90.04

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=98.95  E-value=2.3e-10  Score=78.73  Aligned_cols=44  Identities=25%  Similarity=0.448  Sum_probs=42.5

Q ss_pred             HHHHhhCCCCCCCcccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           18 RRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        18 ~~a~~~~~~~~~~~v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      -.+|+++|..+++++++||||+|++|++|+|+.|..||+|.|||
T Consensus        99 ~~~fl~~n~~~~gv~~~~sGl~y~vl~~G~G~~p~~gd~V~V~Y  142 (219)
T 3oe2_A           99 ERTFMAGEKAKPGVKELADGILMTELTPGTGPKPDANGRVEVRY  142 (219)
T ss_dssp             HHHHHHHHHTSTTCEECGGGCEEEEEECCCSCCCCTTSEEEEEE
T ss_pred             HHHHHHHhccCCCcEECCCCeEEEEEecCCCccCCCCCEEEEEE
Confidence            47899999999999999999999999999999999999999998

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=98.93  E-value=2.9e-10  Score=74.78  Aligned_cols=46  Identities=20%  Similarity=0.352  Sum_probs=42.9

Q ss_pred             ccHHHHhhCCCCCCCcccCCCCCeEEEeEcccCCC-cCCCCeEEEeC
Q 042109           16 TSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPV-AKKGSRVAVRL   61 (61)
Q Consensus        16 ~~~~a~~~~~~~~~~~v~~pSGLqy~dl~~G~G~~-p~~G~tV~VhY   61 (61)
                      ....+|+++|..+++++++||||+|++|+.|+|+. |+.||.|.|||
T Consensus        17 ~~~~~~l~~~~~~~~~~~~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y   63 (167)
T 1jvw_A           17 RVGRLFMEQKAAQPDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHY   63 (167)
T ss_dssp             HHHHHHHHHHHHSTTEEECTTSCEEEEEECCCCSBCCCTTCCEEEEE
T ss_pred             HHHHHHHHhcccCCCcEECCCCEEEEEEEcCCCCcCCCCCCEEEEEE
Confidence            44578999999999999999999999999999999 99999999998

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=98.92  E-value=3.8e-10  Score=76.86  Aligned_cols=44  Identities=25%  Similarity=0.398  Sum_probs=41.8

Q ss_pred             HHHHhhCCCCCCCcccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           18 RRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        18 ~~a~~~~~~~~~~~v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      ..+|+.+|..+++++++||||+|++|++|+|+.|+.||+|.|||
T Consensus        88 ~~~~l~~~~~~~~v~~~~sGl~y~vl~~G~G~~p~~gD~V~V~Y  131 (213)
T 1fd9_A           88 GEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEY  131 (213)
T ss_dssp             HHHHHHHHHHSTTEEECTTSCEEEEEECCCSCCCCTTCEEEEEE
T ss_pred             HHHHHHHhcccCCcEECCCccEEEEEecCCCccCCCCCEEEEEE
Confidence            46799999999999999999999999999999999999999998

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=98.82  E-value=2.1e-09  Score=70.18  Aligned_cols=44  Identities=32%  Similarity=0.328  Sum_probs=41.3

Q ss_pred             HHHHhhCCCCCCCcc--------cCCCCC-eEEEeEcccCC--CcCCCCeEEEeC
Q 042109           18 RRALRASKIPESEFT--------TLPNGL-KYYDVKVGGGP--VAKKGSRVAVRL   61 (61)
Q Consensus        18 ~~a~~~~~~~~~~~v--------~~pSGL-qy~dl~~G~G~--~p~~G~tV~VhY   61 (61)
                      -.+|+++|..++++.        +++||+ +|++|++|+|+  .|+.||+|.|||
T Consensus        16 ~~~fl~~~~~~~gv~~~~~~~~~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y   70 (157)
T 2jwx_A           16 AREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHL   70 (157)
T ss_dssp             SCSSCSCCSSCCCCCCCCCSCEESSSSSSEEEEEEECCSTTSCCCCTTEEEEEEE
T ss_pred             HHHHHHHhccCCCccccccccceECCCCCEEEEEEEccCCCccCCCCCCEEEEEE
Confidence            367999999999999        999998 89999999998  999999999998

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=98.76  E-value=2.7e-09  Score=73.20  Aligned_cols=44  Identities=27%  Similarity=0.354  Sum_probs=41.5

Q ss_pred             HHHHhhCCCCCCCcccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           18 RRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        18 ~~a~~~~~~~~~~~v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      ..+|++++..++++.+++|||+|++|++|+|..|+.||+|.|||
T Consensus       103 ~~~fl~~~~~~~~v~~~~sGl~y~vl~~G~G~~p~~gD~V~V~Y  146 (224)
T 1q6h_A          103 GKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNY  146 (224)
T ss_dssp             HHHHHHHHHHSTTEEECTTSCEEEEEECCSSCCCCTTCEEEEEE
T ss_pred             HHHHHHHhCcCCCeEECCCceEEEEEecccCccccCCCEEEEEE
Confidence            46788898899999999999999999999999999999999998

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=98.64  E-value=2.7e-08  Score=61.69  Aligned_cols=34  Identities=38%  Similarity=0.639  Sum_probs=31.6

Q ss_pred             CCCcccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           28 ESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        28 ~~~~v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      ..+++++||||+|++|++|+|..|+.||.|.|||
T Consensus         4 ~~~~~~~~~Gl~~~~l~~G~G~~~~~gd~V~v~Y   37 (129)
T 1u79_A            4 SCEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHY   37 (129)
T ss_dssp             -CCCEECTTSCEEEEEECCSSCBCCTTCEEEEEE
T ss_pred             CCccEECCCCeEEEEEEcCCCCCCCCCCEEEEEE
Confidence            4678899999999999999999999999999998

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=98.51  E-value=9.5e-08  Score=60.08  Aligned_cols=37  Identities=32%  Similarity=0.493  Sum_probs=34.0

Q ss_pred             CCCCCCcccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           25 KIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        25 ~~~~~~~v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      +..++++.++|+||+|++|++|+|..|+.||.|.|||
T Consensus        17 ~~~~~~~~~~~~gl~~~~l~~G~G~~~~~gd~V~v~Y   53 (133)
T 2y78_A           17 RGSHMTVVTTESGLKYEDLTEGSGAEARAGQTVSVHY   53 (133)
T ss_dssp             GTTTTCCEECTTSCEEEEEECCSSCBCCTTSEEEEEE
T ss_pred             cccCCCcEECCCCEEEEEEEcCCCCCCCCCCEEEEEE
Confidence            3456778999999999999999999999999999998

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=98.34  E-value=2.7e-07  Score=55.49  Aligned_cols=29  Identities=21%  Similarity=0.409  Sum_probs=27.8

Q ss_pred             cCCCCCeEEEeEcccCCC-cCCCCeEEEeC
Q 042109           33 TLPNGLKYYDVKVGGGPV-AKKGSRVAVRL   61 (61)
Q Consensus        33 ~~pSGLqy~dl~~G~G~~-p~~G~tV~VhY   61 (61)
                      +++|||+|+++++|+|+. |+.||.|.+||
T Consensus         3 ~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y   32 (113)
T 1yat_A            3 VIEGNVKIDRISPGDGATFPKTGDLVTIHY   32 (113)
T ss_dssp             ECGGGCEEEEEECCCSSCCCCTTCEEEEEE
T ss_pred             CCCCCeEEEEEECCCCcccCCCCCEEEEEE
Confidence            579999999999999999 99999999998

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=98.32  E-value=2.9e-07  Score=60.60  Aligned_cols=35  Identities=23%  Similarity=0.176  Sum_probs=32.5

Q ss_pred             CCCCcccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           27 PESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        27 ~~~~~v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      ..+++.++++||+|++|+.|+|..|+.||.|.|||
T Consensus        40 ~~~~~~~~~~gl~~~vl~~G~G~~~~~Gd~V~v~Y   74 (180)
T 2f4e_A           40 VDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHY   74 (180)
T ss_dssp             CCSCCEEEETTEEEEEEECCBSCCBCTTCEEEEEE
T ss_pred             cCCCcEECCCceEEEEEeCCCCCCCCCCCEEEEEE
Confidence            44678899999999999999999999999999998

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=98.32  E-value=4.5e-07  Score=54.82  Aligned_cols=29  Identities=24%  Similarity=0.178  Sum_probs=27.0

Q ss_pred             cCCCCCeEEEeEcccCC-CcCCCCeEEEeC
Q 042109           33 TLPNGLKYYDVKVGGGP-VAKKGSRVAVRL   61 (61)
Q Consensus        33 ~~pSGLqy~dl~~G~G~-~p~~G~tV~VhY   61 (61)
                      ++||||+|++|++|+|. .|+.||.|.|||
T Consensus         1 ~~p~g~~~~il~~G~g~~~p~~gd~V~v~Y   30 (119)
T 3kz7_A            1 EGPPKYTKSILKKGDKTNFPKKGDVVHCWY   30 (119)
T ss_dssp             CCSCSEEEEEEECCCSSCCCCTTCEEEEEE
T ss_pred             CCCCccEEEEEEcCCCCCcCCCCCEEEEEE
Confidence            47999999999999996 599999999998

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=98.31  E-value=3.9e-07  Score=56.17  Aligned_cols=40  Identities=20%  Similarity=0.199  Sum_probs=30.4

Q ss_pred             hhCCCCCCCcccCCCCCeEE-EeEcc---cCCCcCCCCeEEEeC
Q 042109           22 RASKIPESEFTTLPNGLKYY-DVKVG---GGPVAKKGSRVAVRL   61 (61)
Q Consensus        22 ~~~~~~~~~~v~~pSGLqy~-dl~~G---~G~~p~~G~tV~VhY   61 (61)
                      |++|.+++++.+++||++|+ +|+.|   +|..|+.||.|.|||
T Consensus         1 ~~~~~~~~~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y   44 (129)
T 2vn1_A            1 MTTEQEFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHY   44 (129)
T ss_dssp             ------CEEEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEE
T ss_pred             CCcccccCCcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEE
Confidence            45677889999999999986 77854   679999999999998

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=98.28  E-value=8.6e-07  Score=54.21  Aligned_cols=34  Identities=12%  Similarity=-0.087  Sum_probs=31.2

Q ss_pred             CCCcccCCCCCeEEEeEccc--CCCcCCCCeEEEeC
Q 042109           28 ESEFTTLPNGLKYYDVKVGG--GPVAKKGSRVAVRL   61 (61)
Q Consensus        28 ~~~~v~~pSGLqy~dl~~G~--G~~p~~G~tV~VhY   61 (61)
                      +.++.++++||+|++|++|+  |..++.||.|.|||
T Consensus         4 ~~~~~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y   39 (125)
T 4dip_A            4 SMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHY   39 (125)
T ss_dssp             -CGGGCCCCCCEEEEEECCSCCSCCCCTTCEEEEEE
T ss_pred             cCceEECCCCeEEEEEEcCCCCCCcCCCCCEEEEEE
Confidence            46778899999999999999  89999999999998

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=1.1e-06  Score=54.96  Aligned_cols=35  Identities=31%  Similarity=0.300  Sum_probs=32.4

Q ss_pred             CCCCcccCCCC-CeEEEeEcccCC--CcCCCCeEEEeC
Q 042109           27 PESEFTTLPNG-LKYYDVKVGGGP--VAKKGSRVAVRL   61 (61)
Q Consensus        27 ~~~~~v~~pSG-Lqy~dl~~G~G~--~p~~G~tV~VhY   61 (61)
                      ..+.+..++|| |+|++|++|+|+  .|+.||+|.|||
T Consensus         7 ~~~~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y   44 (135)
T 2d9f_A            7 GEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHL   44 (135)
T ss_dssp             CSSCEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEE
T ss_pred             cccCcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEE
Confidence            56778889999 999999999998  899999999998

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=98.27  E-value=6.1e-07  Score=56.05  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=32.9

Q ss_pred             CCCCCcccCCCCCeEE--EeEcccCCC-cCCCCeEEEeC
Q 042109           26 IPESEFTTLPNGLKYY--DVKVGGGPV-AKKGSRVAVRL   61 (61)
Q Consensus        26 ~~~~~~v~~pSGLqy~--dl~~G~G~~-p~~G~tV~VhY   61 (61)
                      .....+.+++|||+|+  +|++|+|+. |+.||.|.|||
T Consensus        12 ~~~~~~~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y   50 (130)
T 2lgo_A           12 LEAQTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHY   50 (130)
T ss_dssp             SCCSSCSSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEE
T ss_pred             cccccceeCCCceEEEEEEEeccCCCccCCCCCEEEEEE
Confidence            3566778899999999  999999999 99999999998

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=98.26  E-value=7.4e-07  Score=54.18  Aligned_cols=34  Identities=32%  Similarity=0.324  Sum_probs=31.0

Q ss_pred             CCCcccCCCC-CeEEEeEcccCC--CcCCCCeEEEeC
Q 042109           28 ESEFTTLPNG-LKYYDVKVGGGP--VAKKGSRVAVRL   61 (61)
Q Consensus        28 ~~~~v~~pSG-Lqy~dl~~G~G~--~p~~G~tV~VhY   61 (61)
                      .+.+..++|| |+|++|++|+|+  .|+.||.|.+||
T Consensus         4 ~~~~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y   40 (118)
T 2awg_A            4 EEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHL   40 (118)
T ss_dssp             TCEEESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEE
T ss_pred             ccceEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEE
Confidence            4567788999 999999999998  899999999998

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=98.18  E-value=1.3e-06  Score=58.71  Aligned_cols=32  Identities=38%  Similarity=0.594  Sum_probs=30.5

Q ss_pred             CcccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           30 EFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        30 ~~v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      .++++||||+|+++++|+|..|+.||.|.|||
T Consensus        98 t~~~~~sGl~~~vl~~G~G~~~~~gd~V~v~Y  129 (209)
T 3uf8_A           98 TVVTTESGLKYEDLTEGSGAEARAGQTVSVHY  129 (209)
T ss_dssp             CCEECTTSCEEEEEECCCSCBCCTTCEEEEEE
T ss_pred             cccCCCCceEEEEEEcCCCCcCCCCCEEEEEE
Confidence            37889999999999999999999999999998

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=98.16  E-value=9.7e-07  Score=55.14  Aligned_cols=34  Identities=15%  Similarity=0.133  Sum_probs=30.6

Q ss_pred             CCCcccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           28 ESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        28 ~~~~v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      +...+++++||+|++|++|+|..+..||.|.|||
T Consensus        18 ~~~~v~~~~gl~~~vl~~G~g~~~~~gd~V~v~Y   51 (134)
T 3b7x_A           18 RMLDISGDRGVLKDVIREGAGDLVAPDASVLVKY   51 (134)
T ss_dssp             TCEESSSSSSEEEEEEECCEEEECCTTCEEEEEE
T ss_pred             ccceeeCCCCEEEEEEEcCCCCCCCCCCEEEEEE
Confidence            3445678999999999999999999999999998

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=98.08  E-value=1.2e-06  Score=57.91  Aligned_cols=30  Identities=13%  Similarity=0.366  Sum_probs=26.6

Q ss_pred             ccCCCCCeEEEeEcccCCCc--CCCCeEEEeC
Q 042109           32 TTLPNGLKYYDVKVGGGPVA--KKGSRVAVRL   61 (61)
Q Consensus        32 v~~pSGLqy~dl~~G~G~~p--~~G~tV~VhY   61 (61)
                      .+++|||+|++|++|+|+.|  .+|++|.|||
T Consensus         6 ~~~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY   37 (165)
T 2lkn_A            6 RLREDGIQKRVIQEGRGELPDFQDGTKATFHY   37 (165)
T ss_dssp             HHHTTSCCCCEEECCSSCCCCCCTTCEEEEEC
T ss_pred             cccCCCeEEEEEECCcCCCCCCCCCCEEEEEE
Confidence            35689999999999999865  5899999999

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=97.96  E-value=6.6e-06  Score=51.38  Aligned_cols=28  Identities=25%  Similarity=0.260  Sum_probs=26.7

Q ss_pred             CCCCCeEEEeEcccCC-CcCCCCeEEEeC
Q 042109           34 LPNGLKYYDVKVGGGP-VAKKGSRVAVRL   61 (61)
Q Consensus        34 ~pSGLqy~dl~~G~G~-~p~~G~tV~VhY   61 (61)
                      +++||+|+++++|+|. .|+.||.|.|||
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y   40 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHY   40 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEE
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEE
Confidence            7999999999999997 699999999998

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=97.95  E-value=6.2e-06  Score=48.82  Aligned_cols=25  Identities=24%  Similarity=0.492  Sum_probs=24.1

Q ss_pred             CCeEEEeEcccCCC-cCCCCeEEEeC
Q 042109           37 GLKYYDVKVGGGPV-AKKGSRVAVRL   61 (61)
Q Consensus        37 GLqy~dl~~G~G~~-p~~G~tV~VhY   61 (61)
                      ||+|+++++|+|+. |+.||.|.+||
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y   26 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHY   26 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEE
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEE
Confidence            79999999999998 99999999998

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.94  E-value=5.2e-06  Score=56.38  Aligned_cols=33  Identities=24%  Similarity=0.178  Sum_probs=30.6

Q ss_pred             CCcccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           29 SEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        29 ~~~v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      .++.++++||+|++|++|+|..|..||+|.|||
T Consensus        42 ~~~~~~~~~~~~~~~~~g~g~~~~~gd~v~v~y   74 (338)
T 2if4_A           42 SEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHY   74 (338)
T ss_dssp             SCCEEEETTEEEEEEECCBSCCCCTTCEEEEEE
T ss_pred             cCceeCCCCeEEEEEeCCCCCCCCCCCEEEEEE
Confidence            456788999999999999999999999999998

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=97.75  E-value=2.5e-05  Score=48.11  Aligned_cols=29  Identities=24%  Similarity=0.318  Sum_probs=26.7

Q ss_pred             cCCCCCeEEEeEcccCC-CcCCCCeEEEeC
Q 042109           33 TLPNGLKYYDVKVGGGP-VAKKGSRVAVRL   61 (61)
Q Consensus        33 ~~pSGLqy~dl~~G~G~-~p~~G~tV~VhY   61 (61)
                      ..++||+|+++++|+|. .|+.||.|.|||
T Consensus        16 ~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y   45 (128)
T 3o5q_A           16 KKDRGVLKIVKRVGNGEETPMIGDKVYVHY   45 (128)
T ss_dssp             SCSSSEEEEEEECCSSSCCCCTTCEEEEEE
T ss_pred             cCCCCEEEEEEECCCCCccCCCCCEEEEEE
Confidence            35899999999999998 699999999998

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=97.62  E-value=4.1e-05  Score=53.14  Aligned_cols=28  Identities=25%  Similarity=0.252  Sum_probs=27.0

Q ss_pred             CCCCCeEEEeEcccCCC-cCCCCeEEEeC
Q 042109           34 LPNGLKYYDVKVGGGPV-AKKGSRVAVRL   61 (61)
Q Consensus        34 ~pSGLqy~dl~~G~G~~-p~~G~tV~VhY   61 (61)
                      +++||+|++|++|+|.. |+.||.|.|||
T Consensus        49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y   77 (280)
T 1q1c_A           49 QDEGVLKVIKREGTGTEMPMIGDRVFVHY   77 (280)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEE
T ss_pred             CCCceEEEEEeCCCCCcCCCCCCEEEEEE
Confidence            68999999999999998 99999999998

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=97.61  E-value=8.2e-06  Score=57.57  Aligned_cols=33  Identities=30%  Similarity=0.313  Sum_probs=0.0

Q ss_pred             CCcccCCCCCeEEEeEcccC-CCcCCCCeEEEeC
Q 042109           29 SEFTTLPNGLKYYDVKVGGG-PVAKKGSRVAVRL   61 (61)
Q Consensus        29 ~~~v~~pSGLqy~dl~~G~G-~~p~~G~tV~VhY   61 (61)
                      ++...++|||+|+++++|+| +.|+.||.|.+||
T Consensus         4 ~~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y   37 (356)
T 3jxv_A            4 EENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHY   37 (356)
T ss_dssp             ----------------------------------
T ss_pred             ccceECCCCeEEEEEEeecCCccCCCCCEEEEEE
Confidence            44567899999999999999 6899999999999

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=97.60  E-value=5.4e-05  Score=47.72  Aligned_cols=28  Identities=25%  Similarity=0.328  Sum_probs=26.5

Q ss_pred             CCCCCeEEEeEcccCC-CcCCCCeEEEeC
Q 042109           34 LPNGLKYYDVKVGGGP-VAKKGSRVAVRL   61 (61)
Q Consensus        34 ~pSGLqy~dl~~G~G~-~p~~G~tV~VhY   61 (61)
                      .++||.|+++++|+|. .|..||.|.|||
T Consensus        33 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y   61 (144)
T 3o5e_A           33 KDRGVLKIVKRVGNGEETPMIGDKVYVHY   61 (144)
T ss_dssp             CSSSEEEEEEECCBSSCCCCTTCEEEEEE
T ss_pred             CCCeEEEEEEECCCCCccCCCCCEEEEEE
Confidence            5899999999999998 799999999998

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.47  E-value=3.6e-05  Score=54.35  Aligned_cols=28  Identities=25%  Similarity=0.305  Sum_probs=15.8

Q ss_pred             CCCCCeEEEeEcccCCC-cCCCCeEEEeC
Q 042109           34 LPNGLKYYDVKVGGGPV-AKKGSRVAVRL   61 (61)
Q Consensus        34 ~pSGLqy~dl~~G~G~~-p~~G~tV~VhY   61 (61)
                      +++||+|++|++|+|.. |..||.|.|||
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y   57 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHY   57 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEE
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEE
Confidence            68999999999999998 99999999998

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.31  E-value=0.00019  Score=48.54  Aligned_cols=32  Identities=22%  Similarity=0.191  Sum_probs=27.4

Q ss_pred             CcccCCCCCeEEEeEcccCC-CcCCCCeEEEeC
Q 042109           30 EFTTLPNGLKYYDVKVGGGP-VAKKGSRVAVRL   61 (61)
Q Consensus        30 ~~v~~pSGLqy~dl~~G~G~-~p~~G~tV~VhY   61 (61)
                      ..++.++||++++|+.|+|. .|..|++|.|||
T Consensus        19 ~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y   51 (336)
T 1p5q_A           19 SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVAL   51 (336)
T ss_dssp             ---CCTTSEEEEEEECCCCSCCCCTTCEEEEEE
T ss_pred             eeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEE
Confidence            34567899999999999998 799999999998

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=96.24  E-value=0.0034  Score=43.39  Aligned_cols=28  Identities=25%  Similarity=0.226  Sum_probs=25.9

Q ss_pred             CCCCCeEEEeEcccCC-CcCCCCeEEEeC
Q 042109           34 LPNGLKYYDVKVGGGP-VAKKGSRVAVRL   61 (61)
Q Consensus        34 ~pSGLqy~dl~~G~G~-~p~~G~tV~VhY   61 (61)
                      ..+||+|++++.|+|. .|+.||+|.+||
T Consensus       166 ~d~gl~~~il~~G~G~~~~~~gd~V~i~y  194 (280)
T 1q1c_A          166 EDGGIIRRIQTRGEGYAKPNEGAIVEVAL  194 (280)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEE
T ss_pred             cccceeEEeeecccccccccCCceEEEEE
Confidence            5689999999999998 589999999998

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=96.14  E-value=0.0046  Score=43.47  Aligned_cols=28  Identities=18%  Similarity=0.182  Sum_probs=26.1

Q ss_pred             CCCCCeEEEeEcccC-CCcCCCCeEEEeC
Q 042109           34 LPNGLKYYDVKVGGG-PVAKKGSRVAVRL   61 (61)
Q Consensus        34 ~pSGLqy~dl~~G~G-~~p~~G~tV~VhY   61 (61)
                      ..+|++|+.++.|+| ..|+.||+|.|||
T Consensus       242 ~d~~~~~~i~~~g~g~~~~~~gd~V~v~y  270 (356)
T 3jxv_A          242 DDKKILKKVLKEXEGYERPNEGAVVTVKI  270 (356)
T ss_dssp             TTCCEEEEEEECCBSSCCCCTTCEEEEEE
T ss_pred             cccceeEEeeecccccCCCCCCCEEEEEE
Confidence            467999999999999 7999999999998

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=90.04  E-value=0.29  Score=34.26  Aligned_cols=28  Identities=21%  Similarity=0.334  Sum_probs=24.0

Q ss_pred             CCCCCeEEEeEcccCC-CcCCCCeEEEeC
Q 042109           34 LPNGLKYYDVKVGGGP-VAKKGSRVAVRL   61 (61)
Q Consensus        34 ~pSGLqy~dl~~G~G~-~p~~G~tV~VhY   61 (61)
                      ...++..+.++.|.|. .|..|++|.|||
T Consensus       144 ~dg~~~k~i~~~g~~~~~p~~g~~V~v~y  172 (457)
T 1kt0_A          144 EDGGIIRRTKRKGEGYSNPNEGATVEIHL  172 (457)
T ss_dssp             SSSSEEEEEEECCBCSCCCCTTCEEEEEE
T ss_pred             CCcceEEEEEecCCCCCCCCCCCEEEEEE
Confidence            3457888889999885 799999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	61
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	9e-07
d1ppja1	232	d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1	4e-04
d1hr6b1	222	d.185.1.1 (B:24-245) Mitochondrial processing pept	4e-04
d3cx5a1	213	d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1	7e-04
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	0.003

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.2 bits (93), Expect = 9e-07
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 30 EFTTLPNGLKYYDVKVGGGPVAKKGS 55
          EF+  P+GL + D  VG GP A KG 
Sbjct: 2  EFSVSPSGLAFCDKVVGYGPEAVKGQ 27

>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.9 bits (76), Expect = 4e-04
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 15 STSRRALRASKIPESEFTTLPNGLKYY 41
          +T  +AL++  +PE++ + L NGL+  
Sbjct: 1  ATYAQALQS--VPETQVSQLDNGLRVA 25

>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Mitochondrial processing peptidase (MPP) beta chain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.9 bits (76), Expect = 4e-04
 Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 6/36 (16%)

Query: 27 PESEFTTLPNGLKYYDVKVGGGPVA------KKGSR 56
          P +  + LPNGL      +     A        GSR
Sbjct: 1  PGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSR 36

>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.1 bits (74), Expect = 7e-04
 Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 6/34 (17%)

Query: 29 SEFTTLPNGLKYYDVKVGGGPVA------KKGSR 56
          +E T L NG+            A        G+ 
Sbjct: 1  AEVTQLSNGIVVATEHNPSAHTASVGVVFGSGAA 34

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 30.9 bits (69), Expect = 0.003
 Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 1/28 (3%)

Query: 33 TLPNGLKYYDVKVGGGP-VAKKGSRVAV 59
           +   +K   +  G G    K G  V +
Sbjct: 3  VIEGNVKIDRISPGDGATFPKTGDLVTI 30

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	61
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.1
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.06
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.03
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	98.94
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	98.22
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	98.0
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	97.92
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	97.85
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	97.85
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	97.82
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	97.76
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	97.06

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.10  E-value=1.4e-11  Score=80.67  Aligned_cols=44  Identities=25%  Similarity=0.398  Sum_probs=41.6

Q ss_pred             HHHHhhCCCCCCCcccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           18 RRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        18 ~~a~~~~~~~~~~~v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      ..+|++++...++++++||||+|++++.|+|+.|.+||+|.|||
T Consensus        80 ~~~fl~~~~~~~~v~~~~sGl~y~v~~~G~G~~p~~~d~v~v~y  123 (204)
T d1fd9a_          80 GEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEY  123 (204)
T ss_dssp             HHHHHHHHHHSTTEEECTTSCEEEEEECCCSCCCCTTCEEEEEE
T ss_pred             HHHHHHhcccCCceEEecCccEEEEeecCCCcccCCCCEEEEEE
Confidence            45799999989999999999999999999999999999999998

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=2.5e-11  Score=79.90  Aligned_cols=43  Identities=28%  Similarity=0.370  Sum_probs=41.0

Q ss_pred             HHHhhCCCCCCCcccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           19 RALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        19 ~a~~~~~~~~~~~v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      .+|++++..++++.++||||+|+++++|+|+.|..||+|.|||
T Consensus        90 ~~~l~~~~~~~~v~~~~sGl~y~v~~~G~G~~p~~gd~v~v~y  132 (210)
T d1q6ha_          90 KEYREKFAKEKGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNY  132 (210)
T ss_dssp             HHHHHHHHHSTTEEECTTSCEEEEEECCSSCCCCTTCEEEEEE
T ss_pred             HHHHHhhcccCceEEccCceEEEEeeCCCCCCCCCCceEEEEE
Confidence            4688888899999999999999999999999999999999998

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.03  E-value=8.1e-11  Score=71.39  Aligned_cols=32  Identities=41%  Similarity=0.675  Sum_probs=31.0

Q ss_pred             CcccCCCCCeEEEeEcccCCCcCCCCeEEEeC
Q 042109           30 EFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL   61 (61)
Q Consensus        30 ~~v~~pSGLqy~dl~~G~G~~p~~G~tV~VhY   61 (61)
                      +++++||||+|+++++|+|+.|+.||+|.|||
T Consensus         2 ~~~~~psGl~y~~~~~G~G~~p~~gd~V~v~y   33 (125)
T d1u79a_           2 EFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHY   33 (125)
T ss_dssp             CCEECTTSCEEEEEECCSSCBCCTTCEEEEEE
T ss_pred             CcEECCCCCEEEEEEeccCCCCCCCCEEEEEE
Confidence            67899999999999999999999999999998

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.94  E-value=1.3e-10  Score=74.10  Aligned_cols=43  Identities=21%  Similarity=0.393  Sum_probs=40.0

Q ss_pred             HHHhhCCCCCCCcccCCCCCeEEEeEcccCCC-cCCCCeEEEeC
Q 042109           19 RALRASKIPESEFTTLPNGLKYYDVKVGGGPV-AKKGSRVAVRL   61 (61)
Q Consensus        19 ~a~~~~~~~~~~~v~~pSGLqy~dl~~G~G~~-p~~G~tV~VhY   61 (61)
                      .+|+.+|...++++++||||+|++++.|+|.. |..||+|.|||
T Consensus        17 ~~f~~~~~~~~~~~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y   60 (160)
T d1jvwa_          17 RLFMEQKAAQPDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHY   60 (160)
T ss_dssp             HHHHHHHHHSTTEEECTTSCEEEEEECCCCSBCCCTTCCEEEEE
T ss_pred             HHHHHHhccCCCCEECCCCCEEEEEECcccccCCCCCcceEEEE
Confidence            57888888999999999999999999999974 89999999998

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=3.4e-07  Score=54.34  Aligned_cols=29  Identities=21%  Similarity=0.409  Sum_probs=26.9

Q ss_pred             cCCCCCeEEEeEcccCCC-cCCCCeEEEeC
Q 042109           33 TLPNGLKYYDVKVGGGPV-AKKGSRVAVRL   61 (61)
Q Consensus        33 ~~pSGLqy~dl~~G~G~~-p~~G~tV~VhY   61 (61)
                      .+++||+|++|+.|+|.. |+.||+|.+||
T Consensus         3 ~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y   32 (113)
T d1yata_           3 VIEGNVKIDRISPGDGATFPKTGDLVTIHY   32 (113)
T ss_dssp             ECGGGCEEEEEECCCSSCCCCTTCEEEEEE
T ss_pred             CccCCcEEEEEECccCCcCCCCCCEEEEEE
Confidence            468999999999999986 89999999998

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2e-06  Score=50.56  Aligned_cols=25  Identities=24%  Similarity=0.492  Sum_probs=23.7

Q ss_pred             CCeEEEeEcccCCC-cCCCCeEEEeC
Q 042109           37 GLKYYDVKVGGGPV-AKKGSRVAVRL   61 (61)
Q Consensus        37 GLqy~dl~~G~G~~-p~~G~tV~VhY   61 (61)
                      ||+|+++++|+|+. |+.||+|.+||
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y   26 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHY   26 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEE
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEE
Confidence            89999999999986 89999999998

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.92  E-value=4.1e-06  Score=49.03  Aligned_cols=30  Identities=23%  Similarity=0.370  Sum_probs=27.5

Q ss_pred             ccCCCCCeEEEeEcccC-CCcCCCCeEEEeC
Q 042109           32 TTLPNGLKYYDVKVGGG-PVAKKGSRVAVRL   61 (61)
Q Consensus        32 v~~pSGLqy~dl~~G~G-~~p~~G~tV~VhY   61 (61)
                      ++..+||.|+++++|+| +.|+.||+|.|||
T Consensus         4 ~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y   34 (115)
T d1kt1a3           4 LLEDGGIIRRTKRRGEGYSNPNEGARVQIHL   34 (115)
T ss_dssp             TTSSSSEEEEEEECCCCSSCCCTTCEEEEEE
T ss_pred             cccCCCEEEEEEEeecCCCCCCCCCEEEEEE
Confidence            45689999999999999 5899999999998

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.85  E-value=5.3e-06  Score=49.04  Aligned_cols=28  Identities=29%  Similarity=0.330  Sum_probs=21.9

Q ss_pred             CCCCCeEEEeEcccCC-CcCCCCeEEEeC
Q 042109           34 LPNGLKYYDVKVGGGP-VAKKGSRVAVRL   61 (61)
Q Consensus        34 ~pSGLqy~dl~~G~G~-~p~~G~tV~VhY   61 (61)
                      +++||+|+++++|+|. .|..||+|.|||
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y   30 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHY   30 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEEC
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEE
Confidence            4689999999999996 589999999999

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=6.4e-06  Score=48.42  Aligned_cols=27  Identities=26%  Similarity=0.310  Sum_probs=25.1

Q ss_pred             CCCCeEEEeEcccC-CCcCCCCeEEEeC
Q 042109           35 PNGLKYYDVKVGGG-PVAKKGSRVAVRL   61 (61)
Q Consensus        35 pSGLqy~dl~~G~G-~~p~~G~tV~VhY   61 (61)
                      .+||.|++|++|+| ..|..||+|.|||
T Consensus         7 D~gi~~~il~~G~G~~~p~~gd~V~v~y   34 (117)
T d1q1ca2           7 DGGIIRRIQTRGEGYAKPNEGAIVEVAL   34 (117)
T ss_dssp             SSSEEEEEEECCSCSCCCCTTCEEEEEE
T ss_pred             CCCEEEEEEeeecCCCCCCCCCEEEEEE
Confidence            48999999999999 5789999999998

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.82  E-value=7.5e-06  Score=49.02  Aligned_cols=28  Identities=25%  Similarity=0.260  Sum_probs=25.6

Q ss_pred             CCCCCeEEEeEcccCC-CcCCCCeEEEeC
Q 042109           34 LPNGLKYYDVKVGGGP-VAKKGSRVAVRL   61 (61)
Q Consensus        34 ~pSGLqy~dl~~G~G~-~p~~G~tV~VhY   61 (61)
                      ..+||+|+++++|+|. .|..||+|.+||
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y   36 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHY   36 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEE
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEE
Confidence            3589999999999996 599999999998

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.2e-05  Score=48.34  Aligned_cols=27  Identities=26%  Similarity=0.324  Sum_probs=25.0

Q ss_pred             CCCCeEEEeEcccCC-CcCCCCeEEEeC
Q 042109           35 PNGLKYYDVKVGGGP-VAKKGSRVAVRL   61 (61)
Q Consensus        35 pSGLqy~dl~~G~G~-~p~~G~tV~VhY   61 (61)
                      .+||+|+++++|+|. .|..||+|.+||
T Consensus        10 d~gv~~~i~~~G~G~~~P~~gd~V~v~y   37 (120)
T d1q1ca1          10 DEGVLKVIKREGTGTEMPMIGDRVFVHY   37 (120)
T ss_dssp             SSSEEEEEEECCSSSCCCCTTCEEEEEE
T ss_pred             CCCEEEEEEEcccCCcCCCCCCEEEEEE
Confidence            499999999999996 489999999998

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00021  Score=41.97  Aligned_cols=25  Identities=24%  Similarity=0.189  Sum_probs=22.2

Q ss_pred             CCeEEEeEcccCC-CcCCCCeEEEeC
Q 042109           37 GLKYYDVKVGGGP-VAKKGSRVAVRL   61 (61)
Q Consensus        37 GLqy~dl~~G~G~-~p~~G~tV~VhY   61 (61)
                      .+.+++|++|+|. .|+.||+|.|||
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y   27 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWY   27 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEE
Confidence            4678899999996 599999999998