Citrus Sinensis ID: 042110

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
MVGMAASEKSGVALVAQEKFSEPREVEKLVIAPVKKELALEAMNEKEALGMKATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDGQRTWEDVWANSPFPIPNPPNLLRNEMSNGGENFNLWGTVWAASPHSHPYILSLRM
cccccccccccccEEEEEEccccEEEEEEEEEEcHHHHHHHcccHHHHHHHHHHHHccccEEEEEEEcccEEEEccccEEEEEEEEccccEEEEEEEEEccccHHHHHHHHHHHHcEEEcccccccEEEEEEcccccccEEEEEEEEEccccHHHHHHHHHHHHHHccccEEEEcccccccHHHHccccccccEEEEEccccEEEEEEccccccEEEEHHHHHHHHHHHHcccccHHHHHHccccccccccccccccccccccccEEEEEEEEccccccccEEEccc
cccccHHHHccccEEEEEEccccEEEEEEEEEccHHHHcHHHHHHHHHHHHHHHHcccccEEEEEEEcccEEEEcccEEEEEEEEEEEEEEEEcccEEcccccHHHHHHHHHHHHcccccccccccccEEEEccccEccEEEEEEEccccHcHHHHHHHHHHHHHHcccEEEEccccccccHEccccccccccEEEEEEcccEEEEEccccccEEEccHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHcccccccccccHEEEccccccccEEEEEcc
MVGMAASEKSGVALVAQEkfsepreveKLVIAPVKKELALEAMNEKEALGMKATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFqrvftpsviepssgiDRIIYCLcehcfyrrpskagdeqlnvfrfpplvapikCTVFTLVQNQQYEEVAKVISESLSvagishkiditgasigkryartdelgvpcaitvdstssvtirerdskdqmrVHVDDVASIVKALTDgqrtwedvwanspfpipnppnllrnemsnggenfNLWGTvwaasphshpyilslrm
mvgmaaseksgvalvaqekfsepreveklviaPVKKELALEAMNEKEALgmkatleskgevefyvrklgknvcikkNMLLIskekkkefqrvftpsviepssgidRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRyartdelgvpcaitvdstssvtirerdskdqmrvhvDDVASIVKALTDGQRTWEDVWANSPFPIPNPPNLLRNEMSNGGENFNLWGTVWAASPHSHPYILSLRM
MVGMAASEKSGVALVAQEKFSEPREVEKLVIAPVKKELALEAMNEKEALGMKATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDGQRTWEDVWANSPFPIPNPPNLLRNEMSNGGENFNLWGTVWAASPHSHPYILSLRM
****************************LVIAPVKKELAL*************TLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTS*V***********RVHVDDVASIVKALTDGQRTWEDVWANSPFPI**************GENFNLWGTVWAASPHSHPYI*****
**GMA*SEKSGVALVAQEKFSEPREVEKLVIAPVKKELALEAMNEKEALGM**********EFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDGQRTWEDVWANSPFPI*****************FNLWGTVWAASPHSHPYILSLRM
***********VALVAQEKFSEPREVEKLVIAPVKKELALEAMNEKEALGMKATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDGQRTWEDVWANSPFPIPNPPNLLRNEMSNGGENFNLWGTVWAASPHSHPYILSLRM
**********GVALVAQEKFSEPREVEKLVIAPVKKELALEAMNEKEALGMKATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDGQRTWEDVWANSPFPIPNPPNLLRNEMSNGGENFNLWGTVWAASPHSHPYILSLR*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVGMAASEKSGVALVAQEKFSEPREVEKLVIAPVKKELALEAMNEKEALGMKATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDGQRTWEDVWANSPFPIPNPPNLLRNEMSNGGENFNLWGTVWAASPHSHPYILSLRM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query287 2.2.26 [Sep-21-2011]
O23627729 Glycine--tRNA ligase 1, m yes no 0.836 0.329 0.715 3e-95
Q5I0G4637 Glycine--tRNA ligase (Fra no no 0.797 0.359 0.391 8e-40
Q9CZD3729 Glycine--tRNA ligase OS=M yes no 0.797 0.314 0.379 2e-39
P41250739 Glycine--tRNA ligase OS=H yes no 0.797 0.309 0.375 2e-39
Q5RBL1739 Glycine--tRNA ligase OS=P yes no 0.797 0.309 0.379 2e-39
Q04451680 Glycine--tRNA ligase OS=B N/A no 0.811 0.342 0.343 6e-35
Q10039742 Glycine--tRNA ligase OS=C yes no 0.797 0.308 0.368 1e-33
P38088690 Glycine--tRNA ligase 1, m yes no 0.797 0.331 0.361 2e-31
Q10179652 Putative glycine--tRNA li yes no 0.696 0.306 0.373 2e-31
Q8TYY9571 Glycine--tRNA ligase OS=M yes no 0.759 0.381 0.396 8e-31
>sp|O23627|SYGM1_ARATH Glycine--tRNA ligase 1, mitochondrial OS=Arabidopsis thaliana GN=GLYRS-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  348 bits (892), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 181/253 (71%), Positives = 204/253 (80%), Gaps = 13/253 (5%)

Query: 5   AASEKSGVALVAQEKFSEPREVEKLVIAPVKKELALEAM-NEKEAL------------GM 51
           A S+KSG  LVA+EKF+EP+EVEKLVI PVKKEL L    N+K  +             M
Sbjct: 468 AHSDKSGTPLVAEEKFAEPKEVEKLVITPVKKELGLAFKGNQKNVVESLEAMNEEEAMEM 527

Query: 52  KATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCL 111
           KATLESKGEVEFYV  L K+V IKKNM+ ISKEKKKE QRVFTPSVIEPS GI RIIYCL
Sbjct: 528 KATLESKGEVEFYVCTLKKSVNIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCL 587

Query: 112 CEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISH 171
            EHCF  RPSKAGDEQLN+FRFPPLVAPIKCTVF LVQNQQ+EEVAKVIS+ L+  GISH
Sbjct: 588 YEHCFSTRPSKAGDEQLNLFRFPPLVAPIKCTVFPLVQNQQFEEVAKVISKELASVGISH 647

Query: 172 KIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231
           KIDITG SIGKRYARTDELGVP AITVDS +SVTIRERDSKDQ+RV + + AS+V ++++
Sbjct: 648 KIDITGTSIGKRYARTDELGVPFAITVDSDTSVTIRERDSKDQVRVTLKEAASVVSSVSE 707

Query: 232 GQRTWEDVWANSP 244
           G+ TW+DVWA  P
Sbjct: 708 GKMTWQDVWATFP 720
Catalyzes the attachment of glycine to tRNA(Gly). Is also able produce diadenosine tetraphosphate (Ap4A), a universal pleiotropic signaling molecule needed for cell regulation pathways, by direct condensation of 2 ATPs.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4
>sp|Q5I0G4|SYG_RAT Glycine--tRNA ligase (Fragment) OS=Rattus norvegicus GN=Gars PE=1 SV=1 Back     alignment and function description
>sp|Q9CZD3|SYG_MOUSE Glycine--tRNA ligase OS=Mus musculus GN=Gars PE=1 SV=1 Back     alignment and function description
>sp|P41250|SYG_HUMAN Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3 Back     alignment and function description
>sp|Q5RBL1|SYG_PONAB Glycine--tRNA ligase OS=Pongo abelii GN=GARS PE=2 SV=1 Back     alignment and function description
>sp|Q04451|SYG_BOMMO Glycine--tRNA ligase OS=Bombyx mori PE=1 SV=2 Back     alignment and function description
>sp|Q10039|SYG_CAEEL Glycine--tRNA ligase OS=Caenorhabditis elegans GN=grs-1 PE=2 SV=2 Back     alignment and function description
>sp|P38088|SYG_YEAST Glycine--tRNA ligase 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GRS1 PE=1 SV=3 Back     alignment and function description
>sp|Q10179|SYG_SCHPO Putative glycine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=grs1 PE=3 SV=1 Back     alignment and function description
>sp|Q8TYY9|SYG_METKA Glycine--tRNA ligase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=glyS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
224075451 691 predicted protein [Populus trichocarpa] 0.836 0.347 0.774 1e-105
449470277 729 PREDICTED: glycine--tRNA ligase 1, mitoc 0.836 0.329 0.774 1e-104
224053571 690 predicted protein [Populus trichocarpa] 0.836 0.347 0.762 1e-103
449526656 729 PREDICTED: LOW QUALITY PROTEIN: glycine- 0.836 0.329 0.770 1e-103
356527475 725 PREDICTED: glycyl-tRNA synthetase 1, mit 0.836 0.331 0.762 1e-101
225456501 710 PREDICTED: glycyl-tRNA synthetase 1, mit 0.836 0.338 0.758 8e-96
297734516 687 unnamed protein product [Vitis vinifera] 0.836 0.349 0.758 9e-96
313760928 688 glycyl-tRNA synthetase-like protein [Lir 0.836 0.348 0.719 2e-95
313760923 688 glycyl-tRNA synthetase-like protein [Lir 0.836 0.348 0.719 2e-95
317106616 699 JHL07K02.13 [Jatropha curcas] 0.850 0.349 0.700 9e-95
>gi|224075451|ref|XP_002304639.1| predicted protein [Populus trichocarpa] gi|222842071|gb|EEE79618.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/253 (77%), Positives = 213/253 (84%), Gaps = 13/253 (5%)

Query: 5   AASEKSGVALVAQEKFSEPREVEKLVIAPVKKEL-------------ALEAMNEKEALGM 51
           A SEKSGV LVA EKFSEP+EVEKLVIAPVKKEL             ALEAMNEKEAL M
Sbjct: 430 AHSEKSGVPLVAHEKFSEPKEVEKLVIAPVKKELGLAFKGNQKKVVEALEAMNEKEALDM 489

Query: 52  KATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCL 111
           KA+LE+KGEVEFYV  LG+ V IKKNM+ ISKEKKKE QR FTPSVIEPS GI RIIYCL
Sbjct: 490 KASLETKGEVEFYVCTLGEKVTIKKNMVSISKEKKKEHQRTFTPSVIEPSFGIGRIIYCL 549

Query: 112 CEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISH 171
            EH FY RPSKAGDEQLNVFRFPPLVAPIKCTVF LVQNQQYE+VAK+IS++L+ AGISH
Sbjct: 550 YEHSFYMRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEDVAKIISKTLTAAGISH 609

Query: 172 KIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231
           KIDITG SIGKRYARTDELGVP AITVDS SSVTIRERDSKDQ+RV V++ A +VK++TD
Sbjct: 610 KIDITGTSIGKRYARTDELGVPFAITVDSISSVTIRERDSKDQIRVDVEEAAPVVKSVTD 669

Query: 232 GQRTWEDVWANSP 244
           G +TW DVWAN P
Sbjct: 670 GHKTWADVWANFP 682

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449470277|ref|XP_004152844.1| PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224053571|ref|XP_002297878.1| predicted protein [Populus trichocarpa] gi|222845136|gb|EEE82683.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449526656|ref|XP_004170329.1| PREDICTED: LOW QUALITY PROTEIN: glycine--tRNA ligase 1, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356527475|ref|XP_003532335.1| PREDICTED: glycyl-tRNA synthetase 1, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|225456501|ref|XP_002280957.1| PREDICTED: glycyl-tRNA synthetase 1, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734516|emb|CBI15763.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|313760928|gb|ADR79441.1| glycyl-tRNA synthetase-like protein [Liriodendron tulipifera] Back     alignment and taxonomy information
>gi|313760923|gb|ADR79437.1| glycyl-tRNA synthetase-like protein [Liriodendron tulipifera] Back     alignment and taxonomy information
>gi|317106616|dbj|BAJ53123.1| JHL07K02.13 [Jatropha curcas] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
TAIR|locus:2019327729 AT1G29880 [Arabidopsis thalian 0.836 0.329 0.735 3.8e-93
RGD|1307856637 Gars "glycyl-tRNA synthetase" 0.794 0.357 0.396 5.1e-37
UNIPROTKB|Q5I0G4637 Gars "Glycine--tRNA ligase" [R 0.794 0.357 0.396 5.1e-37
MGI|MGI:2449057729 Gars "glycyl-tRNA synthetase" 0.794 0.312 0.392 2.8e-36
UNIPROTKB|Q5RBL1739 GARS "Glycine--tRNA ligase" [P 0.794 0.308 0.384 6.2e-36
UNIPROTKB|F1SII4742 GARS "Uncharacterized protein" 0.794 0.307 0.392 6.3e-36
UNIPROTKB|P41250739 GARS "Glycine--tRNA ligase" [H 0.794 0.308 0.380 8e-36
UNIPROTKB|F1Q332797 GARS "Uncharacterized protein" 0.794 0.286 0.392 2.8e-35
UNIPROTKB|A5D7A2739 GARS "GARS protein" [Bos tauru 0.794 0.308 0.392 5.9e-35
FB|FBgn0027088765 Aats-gly "Glycyl-tRNA syntheta 0.804 0.301 0.387 6.7e-35
TAIR|locus:2019327 AT1G29880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 905 (323.6 bits), Expect = 3.8e-93, Sum P(2) = 3.8e-93
 Identities = 186/253 (73%), Positives = 210/253 (83%)

Query:     5 AASEKSGVALVAQEKFSEPREVEKLVIAPVKKEL-------------ALEAMNEKEALGM 51
             A S+KSG  LVA+EKF+EP+EVEKLVI PVKKEL             +LEAMNE+EA+ M
Sbjct:   468 AHSDKSGTPLVAEEKFAEPKEVEKLVITPVKKELGLAFKGNQKNVVESLEAMNEEEAMEM 527

Query:    52 KATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCL 111
             KATLESKGEVEFYV  L K+V IKKNM+ ISKEKKKE QRVFTPSVIEPS GI RIIYCL
Sbjct:   528 KATLESKGEVEFYVCTLKKSVNIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCL 587

Query:   112 CEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISH 171
              EHCF  RPSKAGDEQLN+FRFPPLVAPIKCTVF LVQNQQ+EEVAKVIS+ L+  GISH
Sbjct:   588 YEHCFSTRPSKAGDEQLNLFRFPPLVAPIKCTVFPLVQNQQFEEVAKVISKELASVGISH 647

Query:   172 KIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231
             KIDITG SIGKRYARTDELGVP AITVDS +SVTIRERDSKDQ+RV + + AS+V ++++
Sbjct:   648 KIDITGTSIGKRYARTDELGVPFAITVDSDTSVTIRERDSKDQVRVTLKEAASVVSSVSE 707

Query:   232 GQRTWEDVWANSP 244
             G+ TW+DVWA  P
Sbjct:   708 GKMTWQDVWATFP 720
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004820 "glycine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006426 "glycyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
RGD|1307856 Gars "glycyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5I0G4 Gars "Glycine--tRNA ligase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2449057 Gars "glycyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RBL1 GARS "Glycine--tRNA ligase" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|F1SII4 GARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P41250 GARS "Glycine--tRNA ligase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q332 GARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7A2 GARS "GARS protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0027088 Aats-gly "Glycyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O23627SYGM1_ARATH6, ., 1, ., 1, ., 1, 40.71540.83620.3292yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_III0547
glycyl-tRNA synthetase (EC-6.1.1.14) (691 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.64.262.1
aminoacyl-tRNA ligase (EC-6.1.1.5) (1028 aa)
  ••• • 0.682
gw1.VII.873.1
aminoacyl-tRNA ligase (EC-6.1.1.5) (1117 aa)
  ••• • 0.666
gw1.VIII.2106.1
threonine-tRNA ligase (EC-6.1.1.3) (669 aa)
   •  • 0.603
gw1.X.6174.1
annotation not avaliable (674 aa)
   •  • 0.592
gw1.28.724.1
histidine-tRNA ligase (EC-6.1.1.21) (441 aa)
      • 0.583
gw1.XIX.1762.1
histidine-tRNA ligase (475 aa)
   •  • 0.580
estExt_Genewise1_v1.C_LG_V3371
serine-tRNA ligase (EC-6.1.1.11) (447 aa)
   •  • 0.574
eugene3.00050325
alanyl-tRNA synthetase (EC-6.1.1.7) (973 aa)
   •  • 0.522
gw1.XI.1444.1
aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)
      • 0.467
grail3.0023017401
aspartate-tRNA ligase (EC-6.1.1.12) (530 aa)
•  •  • 0.457

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
PLN02734684 PLN02734, PLN02734, glycyl-tRNA synthetase 1e-138
COG0423558 COG0423, GRS1, Glycyl-tRNA synthetase (class II) [ 8e-55
TIGR00389551 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, d 6e-50
cd00858121 cd00858, GlyRS_anticodon, GlyRS Glycyl-anticodon b 3e-48
PRK04173456 PRK04173, PRK04173, glycyl-tRNA synthetase; Provis 2e-35
pfam0312993 pfam03129, HGTP_anticodon, Anticodon binding domai 1e-17
PRK14894539 PRK14894, PRK14894, glycyl-tRNA synthetase; Provis 3e-11
cd0073894 cd00738, HGTP_anticodon, HGTP anticodon binding do 7e-09
PRK00037412 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed 5e-05
COG0441589 COG0441, ThrS, Threonyl-tRNA synthetase [Translati 7e-05
cd0085991 cd00859, HisRS_anticodon, HisRS Histidyl-anticodon 1e-04
TIGR00418563 TIGR00418, thrS, threonyl-tRNA synthetase 8e-04
COG0124429 COG0124, HisS, Histidyl-tRNA synthetase [Translati 9e-04
PRK08661477 PRK08661, PRK08661, prolyl-tRNA synthetase; Provis 0.004
>gnl|CDD|178335 PLN02734, PLN02734, glycyl-tRNA synthetase Back     alignment and domain information 
 Score =  406 bits (1045), Expect = e-138
 Identities = 188/253 (74%), Positives = 200/253 (79%), Gaps = 16/253 (6%)

Query: 5   AASEKSGVALVAQEKFSEPREVEKLVIAPVKKEL-------------ALEAMNEKEALGM 51
           A S+KS V LVA EKF+EPREVE LVI P KKEL             ALEAMNEKEA+ M
Sbjct: 426 AHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQKVVVEALEAMNEKEAMEM 485

Query: 52  KATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCL 111
           KA LESKGE EFYV  LGK V IKKNM+ ISKEKKKE QRVFTPSVIEPS GI RIIYCL
Sbjct: 486 KAKLESKGEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCL 545

Query: 112 CEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISH 171
            EH FY RP   GDEQLNVFRFPPLVAPIKCTVF LVQNQQ   VAKVIS+ L+ AGISH
Sbjct: 546 FEHSFYTRP---GDEQLNVFRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISH 602

Query: 172 KIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231
           KIDITG SIGKRYARTDELGVP A+TVDS  SVTIRERDSKDQ+RV V++VAS+VK LTD
Sbjct: 603 KIDITGTSIGKRYARTDELGVPFAVTVDSDGSVTIRERDSKDQVRVPVEEVASVVKDLTD 662

Query: 232 GQRTWEDVWANSP 244
           G+ TWEDV A  P
Sbjct: 663 GRMTWEDVTAKYP 675

Length = 684
>gnl|CDD|223500 COG0423, GRS1, Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232951 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>gnl|CDD|238435 cd00858, GlyRS_anticodon, GlyRS Glycyl-anticodon binding domain Back     alignment and domain information
>gnl|CDD|235240 PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|202547 pfam03129, HGTP_anticodon, Anticodon binding domain Back     alignment and domain information
>gnl|CDD|237851 PRK14894, PRK14894, glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238379 cd00738, HGTP_anticodon, HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>gnl|CDD|234586 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238436 cd00859, HisRS_anticodon, HisRS Histidyl-anticodon binding domain Back     alignment and domain information
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223202 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236327 PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 287
PLN02734684 glycyl-tRNA synthetase 100.0
KOG2298599 consensus Glycyl-tRNA synthetase and related class 100.0
COG0423558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 100.0
TIGR00389551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 100.0
PRK14894539 glycyl-tRNA synthetase; Provisional 100.0
PRK04173456 glycyl-tRNA synthetase; Provisional 99.94
PRK03991613 threonyl-tRNA synthetase; Validated 99.94
cd00858121 GlyRS_anticodon GlyRS Glycyl-anticodon binding dom 99.9
TIGR00408472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 99.89
PLN02837614 threonine-tRNA ligase 99.89
TIGR00409568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 99.89
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 99.89
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 99.89
PRK09194565 prolyl-tRNA synthetase; Provisional 99.89
PRK12444639 threonyl-tRNA synthetase; Reviewed 99.89
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 99.89
cd02426128 Pol_gamma_b_Cterm C-terminal domain of mitochondri 99.88
PRK12325439 prolyl-tRNA synthetase; Provisional 99.87
PRK08661477 prolyl-tRNA synthetase; Provisional 99.87
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 99.87
PLN02908686 threonyl-tRNA synthetase 99.85
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 99.83
PRK14938387 Ser-tRNA(Thr) hydrolase; Provisional 99.83
cd00862202 ProRS_anticodon_zinc ProRS Prolyl-anticodon bindin 99.83
PF0312994 HGTP_anticodon: Anticodon binding domain; InterPro 99.78
cd0086194 ProRS_anticodon_short ProRS Prolyl-anticodon bindi 99.74
COG0124429 HisS Histidyl-tRNA synthetase [Translation, riboso 99.72
cd0086091 ThrRS_anticodon ThrRS Threonyl-anticodon binding d 99.69
CHL00201430 syh histidine-tRNA synthetase; Provisional 99.64
cd0073894 HGTP_anticodon HGTP anticodon binding domain, as f 99.62
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 99.61
KOG1637560 consensus Threonyl-tRNA synthetase [Translation, r 99.59
PLN02530487 histidine-tRNA ligase 99.55
PLN02972763 Histidyl-tRNA synthetase 99.44
cd0085991 HisRS_anticodon HisRS Histidyl-anticodon binding d 99.4
PRK12420423 histidyl-tRNA synthetase; Provisional 99.36
TIGR00442397 hisS histidyl-tRNA synthetase. This model finds a 99.35
KOG4163551 consensus Prolyl-tRNA synthetase [Translation, rib 99.27
KOG2324457 consensus Prolyl-tRNA synthetase [Translation, rib 99.11
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 99.01
KOG1936518 consensus Histidyl-tRNA synthetase [Translation, r 99.01
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 98.22
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 97.94
PF12745 273 HGTP_anticodon2: Anticodon binding domain of tRNAs 97.76
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 97.52
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 94.11
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 92.02
TIGR00414418 serS seryl-tRNA synthetase. This model represents 91.28
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 90.06
PRK05431425 seryl-tRNA synthetase; Provisional 88.02
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information 
Probab=100.00  E-value=5e-56  Score=450.63  Aligned_cols=248  Identities=75%  Similarity=1.040  Sum_probs=237.7

Q ss_pred             cccchhhccCCCeEEEEecCCCeEEEEEEEeeechhh-------------hhhccCHHHHHhHHHhhccCCeEEEEEeeC
Q 042110            2 VGMAASEKSGVALVAQEKFSEPREVEKLVIAPVKKEL-------------ALEAMNEKEALGMKATLESKGEVEFYVRKL   68 (287)
Q Consensus         2 ~~~~Hs~~s~~~l~~~~~~~eP~~~~~~~~~~~~~~~-------------~l~~l~~~~~~~~~~~l~~~~~~~~~v~~~   68 (287)
                      .|++||++||++|+++++|++|++++++++.|||+.|             +|++|+++++++++++|+++|++.+.++..
T Consensus       423 DL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~~~~~g~~fk~~~~~v~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~  502 (684)
T PLN02734        423 DLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQKVVVEALEAMNEKEAMEMKAKLESKGEAEFYVCTL  502 (684)
T ss_pred             chHHHHHhhCCCeEEEeccCCcceeeeEEEecchhhhhHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhcCceeeeeccc
Confidence            4899999999999999999999999999999999999             999999999999999999999999988544


Q ss_pred             CeeEEeecceeeEeeeeecccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEec
Q 042110           69 GKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLV  148 (287)
Q Consensus        69 g~~~~i~~~~v~~~~~~~~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~  148 (287)
                      |++|+|+++|++|+..+++++|++++||||||||||+||+||++||+|+.|   ++|++|.+|+||+|+||+||+|+|+.
T Consensus       503 ~~~~~i~~~~~~~~~~~~~~~~~~~iP~VIEPS~GIgRIl~AilE~s~~~~---~~De~R~~L~~Pp~IAP~qVaIlPL~  579 (684)
T PLN02734        503 GKEVEIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEHSFYTR---PGDEQLNVFRFPPLVAPIKCTVFPLV  579 (684)
T ss_pred             CcceeechhheeeeeeeeeecCceecCceEecCccHHHHHHHHHHHHhccc---cCCCcceEEecCcccCCcEEEEEEec
Confidence            899999999999999999999999999999999999999999999999876   57788999999999999999999998


Q ss_pred             CChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHH
Q 042110          149 QNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKA  228 (287)
Q Consensus       149 ~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~  228 (287)
                      .++++.++|.+|++.||++|++|.+|+++.++|+||++||++|+||+||||++|+||||+|++++|.+++++++++.|.+
T Consensus       580 ~~ee~~~~A~eLa~~LR~~GIrVelDd~~~SIGKRyrrADeiGIPf~ItIG~dgtVTIRdRdsgeQ~rV~ldeLv~~I~~  659 (684)
T PLN02734        580 QNQQLNAVAKVISKELTAAGISHKIDITGTSIGKRYARTDELGVPFAVTVDSDGSVTIRERDSKDQVRVPVEEVASVVKD  659 (684)
T ss_pred             CChHHHHHHHHHHHHHHhCCCEEEEECCCCCHhHHHHHHHHcCCCEEEEECCCCeEEEEECCCCceEEeeHHHHHHHHHH
Confidence            77678899999999999999999999998999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCChHHHhccCCCCCCCCcc
Q 042110          229 LTDGQRTWEDVWANSPFPIPNPPN  252 (287)
Q Consensus       229 l~~~~~~w~~~~~~~p~~~~~~~~  252 (287)
                      ++++..+|+++.++||.|++|++.
T Consensus       660 li~~~~~w~~~~~~~~~~~~~~~~  683 (684)
T PLN02734        660 LTDGRMTWEDVTAKYPAHSSAADD  683 (684)
T ss_pred             HHcCCCCHHHHHhhCccccccccC
Confidence            999999999999999999997653

>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional Back     alignment and domain information
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea Back     alignment and domain information
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis Back     alignment and domain information
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [] Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
2q5h_A691 Crystal Structure Of Apo-Wildtype Glycyl-Trna Synth 2e-40
2pme_A693 The Apo Crystal Structure Of The Glycyl-Trna Synthe 2e-40
2q5i_A691 Crystal Structure Of Apo S581l Glycyl-Trna Syntheta 1e-39
2pmf_A693 The Crystal Structure Of A Human Glycyl-trna Synthe 2e-39
1ati_A505 Crystal Structure Of Glycyl-Trna Synthetase From Th 3e-20
1ggm_A442 Glycyl-Trna Synthetase From Thermus Thermophilus Co 5e-20
>pdb|2Q5H|A Chain A, Crystal Structure Of Apo-Wildtype Glycyl-Trna Synthetase Length = 691 Back     alignment and structure 
Iteration: 1

 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/253 (37%), Positives = 141/253 (55%), Gaps = 24/253 (9%)
Query: 12  VALVAQEKFSEPREVEKLVIAPVK----------KELALEAM---NEKEALGMKATLESK 58
           V LVA++   EP+ V  +   P K           +L +E +   +E     M+  L  K
Sbjct: 424 VPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEK 483
Query: 59  GEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYR 118
           GE  F +   GK   + K+M+ + + +K  +     P+VIEPS G+ RI+Y + EH F+ 
Sbjct: 484 GE--FTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHV 541
Query: 119 RPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGA 178
           R    GDEQ   F FP +VAP KC+V  L QNQ++    K +SE+L+  G+SHK+D +  
Sbjct: 542 R---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSG 598
Query: 179 SIGKRYARTDELGVPCAITVD------STSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232
           SIG+RYARTDE+GV   +T+D      +  + T+R+RDS  Q+R  + ++ SIV+ L +G
Sbjct: 599 SIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANG 658
Query: 233 QRTWEDVWANSPF 245
             TW DV A  P 
Sbjct: 659 NITWADVEARYPL 671
>pdb|2PME|A Chain A, The Apo Crystal Structure Of The Glycyl-Trna Synthetase Length = 693 Back     alignment and structure
>pdb|2Q5I|A Chain A, Crystal Structure Of Apo S581l Glycyl-Trna Synthetase Mutant Length = 691 Back     alignment and structure
>pdb|2PMF|A Chain A, The Crystal Structure Of A Human Glycyl-trna Synthetase Mutant Length = 693 Back     alignment and structure
>pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase From Thermus Thermophilus Length = 505 Back     alignment and structure
>pdb|1GGM|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed With Glycyl-Adenylate Length = 442 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
2zt5_A693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 5e-60
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 2e-42
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 1e-31
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 2e-31
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 7e-07
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 2e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 9e-05
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 1e-04
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 2e-04
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Length = 693 Back     alignment and structure
 Score =  201 bits (512), Expect = 5e-60
 Identities = 93/257 (36%), Positives = 139/257 (54%), Gaps = 24/257 (9%)

Query: 7   SEKSGVALVAQEKFSEPREVEKLVIAPVKKEL-------------ALEAMNEKEALGMKA 53
           +  + V LVA++   EP+ V  +   P K  +              L   +E     M+ 
Sbjct: 419 ARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEM 478

Query: 54  TLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCE 113
            L  KGE    +   GK   + K+M+ + + +K  +     P+VIEPS G+ RI+Y + E
Sbjct: 479 LLNEKGEFT--IETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFE 536

Query: 114 HCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKI 173
           H F+ R    GDEQ   F FP +VAP KC+V  L QNQ++    K +SE+L+  G+SHK+
Sbjct: 537 HTFHVRE---GDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKV 593

Query: 174 DITGASIGKRYARTDELGVPCAITVDSTS------SVTIRERDSKDQMRVHVDDVASIVK 227
           D +  SIG+RYARTDE+GV   +T+D  +      + T+R+RDS  Q+R  + ++ SIV+
Sbjct: 594 DDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQ 653

Query: 228 ALTDGQRTWEDVWANSP 244
            L +G  TW DV A  P
Sbjct: 654 DLANGNITWADVEARYP 670
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Length = 505 Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Length = 454 Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Length = 459 Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Length = 501 Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Length = 459 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Length = 434 Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Length = 401 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
2zt5_A693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 100.0
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 99.97
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 99.96
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 99.94
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 99.93
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 99.92
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 99.91
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 99.91
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 99.9
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 99.89
3ial_A518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.89
4hvc_A519 Bifunctional glutamate/proline--tRNA ligase; ligas 99.89
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 99.89
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.88
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 99.87
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 99.83
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 99.81
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 99.81
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 99.8
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 99.8
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 99.79
4g85_A517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 99.78
4g84_A464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 99.77
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 99.76
1v95_A130 Nuclear receptor coactivator 5; coactivator indepe 99.64
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 99.62
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 97.03
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 94.99
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 94.25
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 90.62
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 90.02
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 87.89
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 87.53
3err_A536 Fusion protein of microtubule binding domain from 85.12
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
Probab=100.00  E-value=1.1e-41  Score=349.08  Aligned_cols=246  Identities=38%  Similarity=0.603  Sum_probs=163.2

Q ss_pred             cccchhhccCCCeEEEEecCCCeEEEEEEEeeechhh-------------hhhccCHHHHHhHHHhhccCCeEEEEEeeC
Q 042110            2 VGMAASEKSGVALVAQEKFSEPREVEKLVIAPVKKEL-------------ALEAMNEKEALGMKATLESKGEVEFYVRKL   68 (287)
Q Consensus         2 ~~~~Hs~~s~~~l~~~~~~~eP~~~~~~~~~~~~~~~-------------~l~~l~~~~~~~~~~~l~~~~~~~~~v~~~   68 (287)
                      .|++|+++||.+|.++.+|++|+.++.+.+.+|++++             +|...++++.+++.+.|...|.+++++  +
T Consensus       414 dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~i~~~Ap~i~d~L~~~~~~~~~~l~~~L~~~g~i~i~v--d  491 (693)
T 2zt5_A          414 DLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEFTIET--E  491 (693)
T ss_dssp             HHHHHHHHHTCCCCEEEC--------------------------------------------------------------
T ss_pred             HHHHHHHHhccchhhhcccCcccceeeeeecCChHHHHHHHHhcccHHHHHhhhhhHHHHHHHHHHHHhcCCEEEEE--C
Confidence            3679999999999999999999999999999998877             466666777888888898888888887  5


Q ss_pred             CeeEEeecceeeEeeeeecccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEec
Q 042110           69 GKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLV  148 (287)
Q Consensus        69 g~~~~i~~~~v~~~~~~~~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~  148 (287)
                      |..|++..+++.+..+...+.|.+++|+||++||||||++++|+|++++.+   ++++.|.++.||+|+||+||+|+|++
T Consensus       492 Gt~Fei~~~~~~~~~y~~~~~Ggry~P~Vi~~s~GigRli~aLie~~~~~~---~~~~~r~g~~~P~~lAP~qV~Vipl~  568 (693)
T 2zt5_A          492 GKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVR---EGDEQRTFFSFPAVVAPFKCSVLPLS  568 (693)
T ss_dssp             --------------------CCEEECCEEEEEEEEHHHHHHHHHHHHEEEC---SSTTCCEEECCCTTTSSCSEEEEESC
T ss_pred             CEEEEecccccceeeEEeccCCcEecCcceeCeehHHHHHHHHHHHhcccc---ccccccccccCCCCCCCCeEEEEEec
Confidence            789999988777665555678999999999999999999999999988754   44556778999999999999999998


Q ss_pred             CChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC------CCcEEEEECCCCCeeeEeHHHH
Q 042110          149 QNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS------TSSVTIRERDSKDQMRVHVDDV  222 (287)
Q Consensus       149 ~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~------~gtVTLRdrdt~~Q~~V~leel  222 (287)
                      +++++..+|.+|++.||++||+|++|++++|+|+||++||++|+||+||||+      +|+|+||+|+|++|.+++++++
T Consensus       569 ~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~~sigkk~k~Ad~~G~p~~IiIG~~El~~~~g~Vtvr~r~t~eq~~v~l~el  648 (693)
T 2zt5_A          569 QNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISEL  648 (693)
T ss_dssp             CSTTTHHHHHHHHHHHHHTTCCEEECCCCSCHHHHHHHHHHTTCCEEEEECHHHHTSSSCEEEEEETTTCCEEEEETTTH
T ss_pred             CcHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhhccCCEEEEEECCCCceEEEeHHHH
Confidence            6556889999999999999999999999999999999999999999999996      6899999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHhccCCCCCCCCcc
Q 042110          223 ASIVKALTDGQRTWEDVWANSPFPIPNPPN  252 (287)
Q Consensus       223 ~~~l~~l~~~~~~w~~~~~~~p~~~~~~~~  252 (287)
                      ++.|.+++.+..+|+++.++||.|++|+..
T Consensus       649 ~~~l~~~l~~~~~w~~~~~~~~~~~~~~~~  678 (693)
T 2zt5_A          649 PSIVQDLANGNITWADVEARYPLFEGQETG  678 (693)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHSCBCC-----
T ss_pred             HHHHHHHHhCcccHHHHHHhccchhccccc
Confidence            999999999999999999999999998544
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1 Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 287
d1g5ha1127 c.51.1.1 (A:343-469) The aaRS-like accessory subun 3e-14
d1atia2394 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) 2e-10
d1b76a2331 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) 2e-10
d1nj1a1127 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS 7e-10
d1qe0a195 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (His 3e-09
d1qf6a1110 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (Thr 2e-08
d1atia1111 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS 3e-08
d1h4vb196 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (His 3e-08
d1kmma199 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (His 8e-08
d1nyra1113 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (Thr 1e-07
d1nj8a1126 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS 2e-07
d1hc7a1127 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS 2e-04
d1g5ha2290 d.104.1.1 (A:41-330) The aaRS-like accessory subun 5e-04
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 127 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.8 bits (160), Expect = 3e-14
 Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 130 VFRFPPLVAPIKCTVFTLVQN----QQYEEVAKVISESLSVAGISHKIDITGASIGKRYA 185
           V +  P +APIK  +          +Q  +          ++      +   +S+ + ++
Sbjct: 3   VLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHS 62

Query: 186 RTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVKALTDGQRTWE 237
           + DE+ V  ++ V  T+     + +R RD+  +  +H+  +   +           
Sbjct: 63  KYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASASNVA 118
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Length = 394 Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Length = 331 Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 127 Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 95 Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 110 Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 111 Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 96 Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 99 Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 113 Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 126 Back     information, alignment and structure
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Length = 127 Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 290 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
d1g5ha1127 The aaRS-like accessory subunit of mitochondrial p 99.92
d1qf6a1110 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.92
d1nj1a1127 Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Me 99.91
d1nyra1113 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.91
d1nj8a1126 Prolyl-tRNA synthetase (ProRS) domain {Archaeon (M 99.89
d1atia1111 Glycyl-tRNA synthetase (GlyRS), C-terminal domain 99.85
d1hc7a1127 Prolyl-tRNA synthetase (ProRS) domain {Thermus the 99.84
d1kmma199 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.79
d1wu7a197 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.78
d1qe0a195 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.78
d1h4vb196 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.77
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.07
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 98.68
d1v95a_130 Nuclear receptor coactivator 5 (KIAA1637) {Human ( 97.95
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 97.13
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 96.41
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 94.58
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 86.34
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.6e-25  Score=181.22  Aligned_cols=115  Identities=17%  Similarity=0.240  Sum_probs=103.4

Q ss_pred             cccccCCCCCCCceEEEEEecCC-hhHHHHHHHHHHHHHHCCCeEEE---eCCCCCHHHHHHHhHHcCCCEEEEEcC---
Q 042110          128 LNVFRFPPLVAPIKCTVFTLVQN-QQYEEVAKVISESLSVAGISHKI---DITGASIGKRYARTDELGVPCAITVDS---  200 (287)
Q Consensus       128 r~~l~lP~~iAP~kV~Ilpl~~~-~e~~~~A~~Ia~~LR~~Gi~v~v---D~s~~SIGKr~k~AdeiGiPy~IiIG~---  200 (287)
                      |.||+|||++||+||+|+|+..+ +++.++|.+|++.|+++|++|.+   |+++.++|+||++|+++|+||+|+||+   
T Consensus         1 r~vL~lpp~lAP~qV~Ii~~~~~~~e~~~~a~~l~~~L~~~gi~v~~~~~D~~~~~lg~k~~~a~~~giP~~iiiG~~e~   80 (127)
T d1g5ha1           1 RKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTL   80 (127)
T ss_dssp             CCEECCCTTTCSCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred             CcEEEcCcccCCceEEEEecCCCCHHHHHHHHHHHHHHHHhcCceeeeeecCCCcCHHHHHHHHHHhCCcEEEEEcCCcc
Confidence            57999999999999999999754 57888999999999999999975   666789999999999999999999998   


Q ss_pred             -CCcEEEEECCCCCeeeEeHHHHHHHHHHHhcCCCChHHHhcc
Q 042110          201 -TSSVTIRERDSKDQMRVHVDDVASIVKALTDGQRTWEDVWAN  242 (287)
Q Consensus       201 -~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~~~~w~~~~~~  242 (287)
                       +|+|+||+|+|++|+.++++++.++|.+.+.+...|+.....
T Consensus        81 ~~~~V~ir~r~t~~q~~i~i~~l~~~l~~~l~~~~~~~~ald~  123 (127)
T d1g5ha1          81 ENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASASNVAAALDH  123 (127)
T ss_dssp             HHCEEEEEETTTCCEEEEETTSHHHHHHHHHHHHHHHHGGGTT
T ss_pred             ccCEEEEEECCCCceEEEEHHHHHHHHHHHHHccccHHHHhhc
Confidence             899999999999999999999999999988876666654443
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure